####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS299_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS299_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.27 2.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 71 - 95 1.64 2.35 LCS_AVERAGE: 50.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 72 - 95 0.89 2.48 LCS_AVERAGE: 43.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 9 13 40 11 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 9 13 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 9 13 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 9 13 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 9 13 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 9 13 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 9 13 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 9 13 40 3 4 6 18 30 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 9 13 40 3 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 5 13 40 3 5 19 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 5 13 40 3 5 6 11 29 34 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 5 13 40 3 5 15 31 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 5 13 40 3 5 6 6 31 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 5 8 40 3 5 6 16 22 34 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 5 8 40 3 4 6 7 7 8 13 26 35 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 3 25 40 3 4 4 5 6 12 17 30 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 24 25 40 9 25 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 24 25 40 15 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 24 25 40 12 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 24 25 40 4 7 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 24 25 40 15 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 24 25 40 15 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 24 25 40 15 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 24 25 40 12 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 24 25 40 13 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 24 25 40 13 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 24 25 40 15 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 24 25 40 15 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 24 25 40 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 24 25 40 11 26 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 24 25 40 4 17 27 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 64.58 ( 43.12 50.62 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 28 31 33 34 35 36 37 38 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 40.00 70.00 77.50 82.50 85.00 87.50 90.00 92.50 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.39 0.56 0.75 0.90 1.02 1.11 1.23 1.39 1.60 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 GDT RMS_ALL_AT 2.42 2.44 2.44 2.46 2.42 2.41 2.41 2.45 2.36 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.020 0 0.174 0.174 1.020 88.214 88.214 LGA S 57 S 57 0.259 0 0.076 0.068 0.408 100.000 100.000 LGA C 58 C 58 0.223 0 0.121 0.141 1.012 95.357 95.317 LGA K 59 K 59 0.891 0 0.558 1.223 7.895 75.119 58.624 LGA G 60 G 60 1.033 0 0.167 0.167 2.506 77.619 77.619 LGA R 61 R 61 0.334 0 0.130 0.558 1.292 97.619 92.294 LGA C 62 C 62 0.487 0 0.604 0.567 1.771 93.214 90.794 LGA F 63 F 63 3.350 0 0.412 1.402 10.147 50.357 26.061 LGA E 64 E 64 1.027 0 0.259 0.703 2.751 79.405 70.741 LGA L 65 L 65 2.003 0 0.634 1.292 4.225 60.119 56.964 LGA Q 66 Q 66 4.001 0 0.056 0.177 11.026 56.548 28.730 LGA E 67 E 67 2.770 0 0.129 1.186 8.755 60.952 32.487 LGA V 68 V 68 2.879 0 0.106 1.070 6.652 42.143 32.177 LGA G 69 G 69 5.331 0 0.064 0.064 6.115 27.024 27.024 LGA P 70 P 70 9.119 0 0.660 0.573 12.960 4.524 2.585 LGA P 71 P 71 7.525 0 0.452 0.557 10.563 19.286 11.497 LGA D 72 D 72 1.238 3 0.631 0.611 3.534 74.167 43.333 LGA C 73 C 73 0.485 0 0.200 0.258 1.079 90.595 90.556 LGA R 74 R 74 0.434 0 0.054 0.570 2.461 95.238 86.710 LGA C 75 C 75 0.287 0 0.169 0.170 1.174 92.976 90.635 LGA D 76 D 76 0.819 0 0.042 0.461 1.542 90.595 86.071 LGA N 77 N 77 2.149 0 0.081 0.903 5.793 70.833 51.548 LGA L 78 L 78 0.740 0 0.160 1.393 3.639 88.214 82.321 LGA C 79 C 79 0.604 0 0.027 0.055 0.742 90.476 90.476 LGA K 80 K 80 0.750 0 0.026 1.164 4.060 90.476 78.730 LGA S 81 S 81 0.875 0 0.048 0.690 3.408 90.476 82.222 LGA Y 82 Y 82 0.829 0 0.126 0.323 1.027 90.476 89.722 LGA S 83 S 83 1.007 0 0.247 0.228 1.866 83.690 80.079 LGA S 84 S 84 0.989 0 0.083 0.074 1.236 92.976 89.127 LGA C 85 C 85 0.559 0 0.056 0.080 0.966 90.476 90.476 LGA C 86 C 86 0.634 0 0.045 0.080 0.915 90.476 90.476 LGA H 87 H 87 0.741 0 0.094 1.035 7.069 92.857 61.952 LGA D 88 D 88 0.532 0 0.208 1.154 3.405 97.619 83.452 LGA F 89 F 89 0.478 0 0.067 0.127 0.632 92.857 97.403 LGA D 90 D 90 0.522 0 0.055 1.155 4.634 92.857 75.060 LGA E 91 E 91 0.281 0 0.083 0.402 1.656 100.000 94.868 LGA L 92 L 92 0.367 0 0.172 0.248 1.024 97.619 92.917 LGA C 93 C 93 0.306 0 0.029 0.080 1.293 100.000 95.317 LGA L 94 L 94 1.022 0 0.414 0.447 4.450 77.619 64.048 LGA K 95 K 95 1.950 0 0.326 1.236 5.197 70.952 57.619 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.269 2.185 3.354 79.301 70.906 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 37 1.39 86.250 79.422 2.490 LGA_LOCAL RMSD: 1.386 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.446 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.269 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.517616 * X + 0.119040 * Y + 0.847292 * Z + -18.885592 Y_new = -0.425547 * X + 0.823290 * Y + -0.375637 * Z + 137.255142 Z_new = -0.742283 * X + -0.554998 * Y + -0.375491 * Z + 29.953405 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.453503 0.836470 -2.165618 [DEG: -140.5754 47.9262 -124.0808 ] ZXZ: 1.153496 1.955723 -2.212818 [DEG: 66.0904 112.0547 -126.7851 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS299_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS299_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 37 1.39 79.422 2.27 REMARK ---------------------------------------------------------- MOLECULE T0543TS299_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 34.711 72.014 18.419 1.00 99.99 N ATOM 423 CA GLY 56 33.742 72.179 19.457 1.00 99.99 C ATOM 424 C GLY 56 32.947 73.419 19.227 1.00 99.99 C ATOM 425 O GLY 56 32.831 74.278 20.101 1.00 99.99 O ATOM 426 N SER 57 32.431 73.551 17.987 1.00 99.99 N ATOM 427 CA SER 57 31.568 74.632 17.616 1.00 99.99 C ATOM 428 C SER 57 30.318 74.029 17.039 1.00 99.99 C ATOM 429 O SER 57 30.354 73.009 16.356 1.00 99.99 O ATOM 430 CB SER 57 32.189 75.533 16.537 1.00 99.99 C ATOM 431 OG SER 57 31.300 76.585 16.201 1.00 99.99 O ATOM 432 N CYS 58 29.166 74.609 17.412 1.00 99.99 N ATOM 433 CA CYS 58 27.827 74.291 16.993 1.00 99.99 C ATOM 434 C CYS 58 27.364 75.031 15.771 1.00 99.99 C ATOM 435 O CYS 58 26.159 75.237 15.646 1.00 99.99 O ATOM 436 CB CYS 58 26.763 74.406 18.097 1.00 99.99 C ATOM 437 SG CYS 58 26.855 72.995 19.244 1.00 99.99 S ATOM 438 N LYS 59 28.255 75.580 14.919 1.00 99.99 N ATOM 439 CA LYS 59 27.764 76.447 13.872 1.00 99.99 C ATOM 440 C LYS 59 26.657 75.854 13.035 1.00 99.99 C ATOM 441 O LYS 59 25.568 76.422 12.986 1.00 99.99 O ATOM 442 CB LYS 59 28.890 76.938 12.942 1.00 99.99 C ATOM 443 CG LYS 59 30.065 75.961 12.796 1.00 99.99 C ATOM 444 CD LYS 59 29.718 74.605 12.180 1.00 99.99 C ATOM 445 CE LYS 59 30.924 73.680 11.991 1.00 99.99 C ATOM 446 NZ LYS 59 31.347 73.109 13.288 1.00 99.99 N ATOM 447 N GLY 60 26.901 74.753 12.307 1.00 99.99 N ATOM 448 CA GLY 60 25.918 74.061 11.507 1.00 99.99 C ATOM 449 C GLY 60 25.115 73.054 12.272 1.00 99.99 C ATOM 450 O GLY 60 23.996 72.705 11.896 1.00 99.99 O ATOM 451 N ARG 61 25.741 72.530 13.336 1.00 99.99 N ATOM 452 CA ARG 61 25.413 71.351 14.084 1.00 99.99 C ATOM 453 C ARG 61 24.109 71.361 14.826 1.00 99.99 C ATOM 454 O ARG 61 23.627 70.283 15.170 1.00 99.99 O ATOM 455 CB ARG 61 26.547 70.953 15.037 1.00 99.99 C ATOM 456 CG ARG 61 27.869 70.757 14.287 1.00 99.99 C ATOM 457 CD ARG 61 28.878 69.867 15.011 1.00 99.99 C ATOM 458 NE ARG 61 29.113 70.446 16.361 1.00 99.99 N ATOM 459 CZ ARG 61 29.409 69.626 17.412 1.00 99.99 C ATOM 460 NH1 ARG 61 29.466 68.274 17.230 1.00 99.99 H ATOM 461 NH2 ARG 61 29.645 70.161 18.644 1.00 99.99 H ATOM 462 N CYS 62 23.505 72.533 15.113 1.00 99.99 N ATOM 463 CA CYS 62 22.326 72.584 15.940 1.00 99.99 C ATOM 464 C CYS 62 21.282 71.658 15.393 1.00 99.99 C ATOM 465 O CYS 62 20.605 70.986 16.170 1.00 99.99 O ATOM 466 CB CYS 62 21.715 73.997 16.054 1.00 99.99 C ATOM 467 SG CYS 62 22.835 75.173 16.873 1.00 99.99 S ATOM 468 N PHE 63 21.094 71.588 14.063 1.00 99.99 N ATOM 469 CA PHE 63 20.189 70.577 13.602 1.00 99.99 C ATOM 470 C PHE 63 21.043 69.389 13.312 1.00 99.99 C ATOM 471 O PHE 63 21.671 69.299 12.257 1.00 99.99 O ATOM 472 CB PHE 63 19.434 70.928 12.310 1.00 99.99 C ATOM 473 CG PHE 63 18.555 69.762 12.006 1.00 99.99 C ATOM 474 CD1 PHE 63 17.349 69.610 12.651 1.00 99.99 C ATOM 475 CD2 PHE 63 18.936 68.819 11.079 1.00 99.99 C ATOM 476 CE1 PHE 63 16.536 68.537 12.377 1.00 99.99 C ATOM 477 CE2 PHE 63 18.125 67.743 10.800 1.00 99.99 C ATOM 478 CZ PHE 63 16.922 67.601 11.449 1.00 99.99 C ATOM 479 N GLU 64 21.081 68.438 14.262 1.00 99.99 N ATOM 480 CA GLU 64 21.920 67.290 14.132 1.00 99.99 C ATOM 481 C GLU 64 21.489 66.377 15.225 1.00 99.99 C ATOM 482 O GLU 64 20.301 66.281 15.527 1.00 99.99 O ATOM 483 CB GLU 64 23.416 67.610 14.315 1.00 99.99 C ATOM 484 CG GLU 64 24.357 66.473 13.912 1.00 99.99 C ATOM 485 CD GLU 64 25.775 67.030 13.879 1.00 99.99 C ATOM 486 OE1 GLU 64 26.369 67.212 14.974 1.00 99.99 O ATOM 487 OE2 GLU 64 26.281 67.289 12.754 1.00 99.99 O ATOM 488 N LEU 65 22.442 65.632 15.812 1.00 99.99 N ATOM 489 CA LEU 65 22.085 64.758 16.885 1.00 99.99 C ATOM 490 C LEU 65 23.213 64.770 17.855 1.00 99.99 C ATOM 491 O LEU 65 24.114 65.606 17.781 1.00 99.99 O ATOM 492 CB LEU 65 21.919 63.289 16.454 1.00 99.99 C ATOM 493 CG LEU 65 20.888 63.065 15.333 1.00 99.99 C ATOM 494 CD1 LEU 65 19.488 63.542 15.748 1.00 99.99 C ATOM 495 CD2 LEU 65 21.367 63.656 13.997 1.00 99.99 C ATOM 496 N GLN 66 23.157 63.848 18.834 1.00 99.99 N ATOM 497 CA GLN 66 24.263 63.719 19.721 1.00 99.99 C ATOM 498 C GLN 66 25.344 63.131 18.883 1.00 99.99 C ATOM 499 O GLN 66 25.094 62.238 18.076 1.00 99.99 O ATOM 500 CB GLN 66 24.000 62.783 20.914 1.00 99.99 C ATOM 501 CG GLN 66 23.727 61.333 20.508 1.00 99.99 C ATOM 502 CD GLN 66 23.482 60.530 21.777 1.00 99.99 C ATOM 503 OE1 GLN 66 22.961 61.041 22.766 1.00 99.99 O ATOM 504 NE2 GLN 66 23.874 59.227 21.751 1.00 99.99 N ATOM 505 N GLU 67 26.575 63.651 19.016 1.00 99.99 N ATOM 506 CA GLU 67 27.623 63.125 18.200 1.00 99.99 C ATOM 507 C GLU 67 28.729 62.678 19.087 1.00 99.99 C ATOM 508 O GLU 67 29.075 63.339 20.064 1.00 99.99 O ATOM 509 CB GLU 67 28.191 64.146 17.197 1.00 99.99 C ATOM 510 CG GLU 67 28.680 65.446 17.840 1.00 99.99 C ATOM 511 CD GLU 67 27.458 66.286 18.182 1.00 99.99 C ATOM 512 OE1 GLU 67 26.513 66.323 17.349 1.00 99.99 O ATOM 513 OE2 GLU 67 27.449 66.900 19.282 1.00 99.99 O ATOM 514 N VAL 68 29.305 61.508 18.762 1.00 99.99 N ATOM 515 CA VAL 68 30.398 60.998 19.524 1.00 99.99 C ATOM 516 C VAL 68 31.579 61.055 18.618 1.00 99.99 C ATOM 517 O VAL 68 31.446 60.916 17.404 1.00 99.99 O ATOM 518 CB VAL 68 30.217 59.570 19.950 1.00 99.99 C ATOM 519 CG1 VAL 68 29.027 59.499 20.922 1.00 99.99 C ATOM 520 CG2 VAL 68 30.039 58.705 18.690 1.00 99.99 C ATOM 521 N GLY 69 32.774 61.302 19.180 1.00 99.99 N ATOM 522 CA GLY 69 33.913 61.365 18.322 1.00 99.99 C ATOM 523 C GLY 69 34.648 62.608 18.668 1.00 99.99 C ATOM 524 O GLY 69 34.844 62.953 19.833 1.00 99.99 O ATOM 525 N PRO 70 35.064 63.278 17.639 1.00 99.99 N ATOM 526 CA PRO 70 35.784 64.504 17.770 1.00 99.99 C ATOM 527 C PRO 70 34.958 65.541 18.454 1.00 99.99 C ATOM 528 O PRO 70 35.561 66.421 19.065 1.00 99.99 O ATOM 529 CB PRO 70 36.243 64.876 16.358 1.00 99.99 C ATOM 530 CG PRO 70 35.490 63.905 15.427 1.00 99.99 C ATOM 531 CD PRO 70 35.203 62.692 16.322 1.00 99.99 C ATOM 532 N PRO 71 33.655 65.518 18.395 1.00 99.99 N ATOM 533 CA PRO 71 32.965 66.545 19.106 1.00 99.99 C ATOM 534 C PRO 71 33.180 66.432 20.573 1.00 99.99 C ATOM 535 O PRO 71 32.729 65.460 21.180 1.00 99.99 O ATOM 536 CB PRO 71 31.516 66.488 18.637 1.00 99.99 C ATOM 537 CG PRO 71 31.648 65.980 17.187 1.00 99.99 C ATOM 538 CD PRO 71 32.938 65.137 17.187 1.00 99.99 C ATOM 539 N ASP 72 33.871 67.429 21.150 1.00 99.99 N ATOM 540 CA ASP 72 34.098 67.488 22.559 1.00 99.99 C ATOM 541 C ASP 72 32.803 67.840 23.211 1.00 99.99 C ATOM 542 O ASP 72 32.488 67.357 24.298 1.00 99.99 O ATOM 543 CB ASP 72 35.154 68.536 22.957 1.00 99.99 C ATOM 544 CG ASP 72 34.687 69.922 22.529 1.00 99.99 C ATOM 545 OD1 ASP 72 34.003 70.028 21.476 1.00 99.99 O ATOM 546 OD2 ASP 72 35.017 70.898 23.254 1.00 99.99 O ATOM 547 N CYS 73 32.011 68.700 22.540 1.00 99.99 N ATOM 548 CA CYS 73 30.782 69.170 23.111 1.00 99.99 C ATOM 549 C CYS 73 29.632 68.709 22.268 1.00 99.99 C ATOM 550 O CYS 73 29.820 68.169 21.179 1.00 99.99 O ATOM 551 CB CYS 73 30.723 70.704 23.222 1.00 99.99 C ATOM 552 SG CYS 73 31.079 71.514 21.637 1.00 99.99 S ATOM 553 N ARG 74 28.393 68.895 22.777 1.00 99.99 N ATOM 554 CA ARG 74 27.246 68.431 22.049 1.00 99.99 C ATOM 555 C ARG 74 26.334 69.575 21.722 1.00 99.99 C ATOM 556 O ARG 74 26.160 70.515 22.497 1.00 99.99 O ATOM 557 CB ARG 74 26.424 67.361 22.791 1.00 99.99 C ATOM 558 CG ARG 74 27.267 66.134 23.144 1.00 99.99 C ATOM 559 CD ARG 74 26.496 64.814 23.188 1.00 99.99 C ATOM 560 NE ARG 74 25.464 64.880 24.256 1.00 99.99 N ATOM 561 CZ ARG 74 25.067 63.718 24.854 1.00 99.99 C ATOM 562 NH1 ARG 74 25.708 62.550 24.555 1.00 99.99 H ATOM 563 NH2 ARG 74 24.030 63.717 25.740 1.00 99.99 H ATOM 564 N CYS 75 25.825 69.550 20.476 1.00 99.99 N ATOM 565 CA CYS 75 24.888 70.474 19.896 1.00 99.99 C ATOM 566 C CYS 75 23.440 70.181 20.211 1.00 99.99 C ATOM 567 O CYS 75 22.580 71.024 19.957 1.00 99.99 O ATOM 568 CB CYS 75 25.083 70.648 18.383 1.00 99.99 C ATOM 569 SG CYS 75 26.722 71.362 18.031 1.00 99.99 S ATOM 570 N ASP 76 23.099 68.970 20.704 1.00 99.99 N ATOM 571 CA ASP 76 21.708 68.617 20.871 1.00 99.99 C ATOM 572 C ASP 76 21.045 69.442 21.939 1.00 99.99 C ATOM 573 O ASP 76 21.696 70.045 22.787 1.00 99.99 O ATOM 574 CB ASP 76 21.482 67.130 21.202 1.00 99.99 C ATOM 575 CG ASP 76 22.131 66.820 22.543 1.00 99.99 C ATOM 576 OD1 ASP 76 23.273 67.297 22.780 1.00 99.99 O ATOM 577 OD2 ASP 76 21.486 66.103 23.354 1.00 99.99 O ATOM 578 N ASN 77 19.695 69.484 21.895 1.00 99.99 N ATOM 579 CA ASN 77 18.858 70.253 22.780 1.00 99.99 C ATOM 580 C ASN 77 19.000 69.745 24.184 1.00 99.99 C ATOM 581 O ASN 77 18.981 70.509 25.147 1.00 99.99 O ATOM 582 CB ASN 77 17.372 70.146 22.414 1.00 99.99 C ATOM 583 CG ASN 77 16.620 71.143 23.274 1.00 99.99 C ATOM 584 OD1 ASN 77 17.220 71.931 24.002 1.00 99.99 O ATOM 585 ND2 ASN 77 15.264 71.108 23.192 1.00 99.99 N ATOM 586 N LEU 78 19.140 68.419 24.309 1.00 99.99 N ATOM 587 CA LEU 78 19.246 67.664 25.524 1.00 99.99 C ATOM 588 C LEU 78 20.523 67.993 26.244 1.00 99.99 C ATOM 589 O LEU 78 20.618 67.811 27.458 1.00 99.99 O ATOM 590 CB LEU 78 19.166 66.151 25.229 1.00 99.99 C ATOM 591 CG LEU 78 19.365 65.208 26.430 1.00 99.99 C ATOM 592 CD1 LEU 78 20.844 65.120 26.809 1.00 99.99 C ATOM 593 CD2 LEU 78 18.468 65.589 27.618 1.00 99.99 C ATOM 594 N CYS 79 21.532 68.519 25.525 1.00 99.99 N ATOM 595 CA CYS 79 22.857 68.691 26.054 1.00 99.99 C ATOM 596 C CYS 79 22.842 69.476 27.326 1.00 99.99 C ATOM 597 O CYS 79 23.675 69.233 28.193 1.00 99.99 O ATOM 598 CB CYS 79 23.832 69.398 25.082 1.00 99.99 C ATOM 599 SG CYS 79 23.419 71.138 24.743 1.00 99.99 S ATOM 600 N LYS 80 21.907 70.426 27.498 1.00 99.99 N ATOM 601 CA LYS 80 21.924 71.239 28.682 1.00 99.99 C ATOM 602 C LYS 80 21.837 70.368 29.900 1.00 99.99 C ATOM 603 O LYS 80 22.501 70.635 30.901 1.00 99.99 O ATOM 604 CB LYS 80 20.758 72.240 28.733 1.00 99.99 C ATOM 605 CG LYS 80 20.870 73.361 27.696 1.00 99.99 C ATOM 606 CD LYS 80 19.594 74.195 27.557 1.00 99.99 C ATOM 607 CE LYS 80 19.761 75.441 26.685 1.00 99.99 C ATOM 608 NZ LYS 80 19.792 75.064 25.254 1.00 99.99 N ATOM 609 N SER 81 21.027 69.295 29.859 1.00 99.99 N ATOM 610 CA SER 81 20.903 68.462 31.021 1.00 99.99 C ATOM 611 C SER 81 22.266 67.939 31.362 1.00 99.99 C ATOM 612 O SER 81 22.683 67.963 32.519 1.00 99.99 O ATOM 613 CB SER 81 19.987 67.251 30.774 1.00 99.99 C ATOM 614 OG SER 81 19.898 66.453 31.946 1.00 99.99 O ATOM 615 N TYR 82 22.992 67.458 30.338 1.00 99.99 N ATOM 616 CA TYR 82 24.312 66.901 30.448 1.00 99.99 C ATOM 617 C TYR 82 25.325 67.945 30.805 1.00 99.99 C ATOM 618 O TYR 82 26.316 67.642 31.464 1.00 99.99 O ATOM 619 CB TYR 82 24.738 66.128 29.194 1.00 99.99 C ATOM 620 CG TYR 82 23.944 64.873 29.295 1.00 99.99 C ATOM 621 CD1 TYR 82 22.577 64.913 29.172 1.00 99.99 C ATOM 622 CD2 TYR 82 24.555 63.660 29.519 1.00 99.99 C ATOM 623 CE1 TYR 82 21.823 63.770 29.265 1.00 99.99 C ATOM 624 CE2 TYR 82 23.807 62.509 29.614 1.00 99.99 C ATOM 625 CZ TYR 82 22.438 62.564 29.488 1.00 99.99 C ATOM 626 OH TYR 82 21.665 61.389 29.584 1.00 99.99 H ATOM 627 N SER 83 25.103 69.202 30.380 1.00 99.99 N ATOM 628 CA SER 83 26.051 70.260 30.589 1.00 99.99 C ATOM 629 C SER 83 27.208 70.041 29.660 1.00 99.99 C ATOM 630 O SER 83 28.296 70.572 29.875 1.00 99.99 O ATOM 631 CB SER 83 26.604 70.311 32.024 1.00 99.99 C ATOM 632 OG SER 83 25.555 70.561 32.946 1.00 99.99 O ATOM 633 N SER 84 26.984 69.216 28.616 1.00 99.99 N ATOM 634 CA SER 84 27.918 68.922 27.559 1.00 99.99 C ATOM 635 C SER 84 27.875 69.984 26.490 1.00 99.99 C ATOM 636 O SER 84 28.642 69.923 25.531 1.00 99.99 O ATOM 637 CB SER 84 27.634 67.575 26.867 1.00 99.99 C ATOM 638 OG SER 84 26.387 67.622 26.191 1.00 99.99 O ATOM 639 N CYS 85 26.982 70.984 26.614 1.00 99.99 N ATOM 640 CA CYS 85 26.757 71.938 25.557 1.00 99.99 C ATOM 641 C CYS 85 27.995 72.738 25.265 1.00 99.99 C ATOM 642 O CYS 85 28.807 73.020 26.146 1.00 99.99 O ATOM 643 CB CYS 85 25.628 72.932 25.880 1.00 99.99 C ATOM 644 SG CYS 85 24.067 72.139 26.389 1.00 99.99 S ATOM 645 N CYS 86 28.157 73.115 23.977 1.00 99.99 N ATOM 646 CA CYS 86 29.267 73.900 23.514 1.00 99.99 C ATOM 647 C CYS 86 29.023 75.298 23.985 1.00 99.99 C ATOM 648 O CYS 86 27.889 75.679 24.267 1.00 99.99 O ATOM 649 CB CYS 86 29.348 73.987 21.981 1.00 99.99 C ATOM 650 SG CYS 86 29.319 72.380 21.132 1.00 99.99 S ATOM 651 N HIS 87 30.098 76.104 24.091 1.00 99.99 N ATOM 652 CA HIS 87 29.969 77.465 24.530 1.00 99.99 C ATOM 653 C HIS 87 29.145 78.184 23.510 1.00 99.99 C ATOM 654 O HIS 87 28.273 78.984 23.840 1.00 99.99 O ATOM 655 CB HIS 87 31.319 78.200 24.589 1.00 99.99 C ATOM 656 CG HIS 87 32.306 77.579 25.531 1.00 99.99 C ATOM 657 ND1 HIS 87 33.161 76.556 25.187 1.00 99.99 N ATOM 658 CD2 HIS 87 32.574 77.865 26.835 1.00 99.99 C ATOM 659 CE1 HIS 87 33.899 76.275 26.290 1.00 99.99 C ATOM 660 NE2 HIS 87 33.579 77.044 27.316 1.00 99.99 N ATOM 661 N ASP 88 29.432 77.881 22.232 1.00 99.99 N ATOM 662 CA ASP 88 28.854 78.443 21.046 1.00 99.99 C ATOM 663 C ASP 88 27.423 78.016 20.924 1.00 99.99 C ATOM 664 O ASP 88 26.637 78.652 20.227 1.00 99.99 O ATOM 665 CB ASP 88 29.574 77.954 19.778 1.00 99.99 C ATOM 666 CG ASP 88 31.002 78.477 19.825 1.00 99.99 C ATOM 667 OD1 ASP 88 31.259 79.411 20.631 1.00 99.99 O ATOM 668 OD2 ASP 88 31.856 77.945 19.066 1.00 99.99 O ATOM 669 N PHE 89 27.049 76.921 21.605 1.00 99.99 N ATOM 670 CA PHE 89 25.758 76.315 21.448 1.00 99.99 C ATOM 671 C PHE 89 24.657 77.315 21.620 1.00 99.99 C ATOM 672 O PHE 89 23.780 77.413 20.763 1.00 99.99 O ATOM 673 CB PHE 89 25.542 75.199 22.488 1.00 99.99 C ATOM 674 CG PHE 89 24.135 74.711 22.421 1.00 99.99 C ATOM 675 CD1 PHE 89 23.758 73.743 21.519 1.00 99.99 C ATOM 676 CD2 PHE 89 23.189 75.224 23.278 1.00 99.99 C ATOM 677 CE1 PHE 89 22.456 73.303 21.476 1.00 99.99 C ATOM 678 CE2 PHE 89 21.886 74.786 23.237 1.00 99.99 C ATOM 679 CZ PHE 89 21.516 73.821 22.333 1.00 99.99 C ATOM 680 N ASP 90 24.676 78.102 22.707 1.00 99.99 N ATOM 681 CA ASP 90 23.585 78.999 22.960 1.00 99.99 C ATOM 682 C ASP 90 23.475 79.982 21.846 1.00 99.99 C ATOM 683 O ASP 90 22.400 80.194 21.290 1.00 99.99 O ATOM 684 CB ASP 90 23.788 79.813 24.250 1.00 99.99 C ATOM 685 CG ASP 90 22.462 80.463 24.608 1.00 99.99 C ATOM 686 OD1 ASP 90 21.418 79.797 24.390 1.00 99.99 O ATOM 687 OD2 ASP 90 22.470 81.626 25.094 1.00 99.99 O ATOM 688 N GLU 91 24.607 80.589 21.462 1.00 99.99 N ATOM 689 CA GLU 91 24.537 81.636 20.494 1.00 99.99 C ATOM 690 C GLU 91 24.034 81.097 19.191 1.00 99.99 C ATOM 691 O GLU 91 23.086 81.627 18.616 1.00 99.99 O ATOM 692 CB GLU 91 25.918 82.274 20.269 1.00 99.99 C ATOM 693 CG GLU 91 25.900 83.610 19.530 1.00 99.99 C ATOM 694 CD GLU 91 27.290 84.215 19.689 1.00 99.99 C ATOM 695 OE1 GLU 91 28.154 83.542 20.314 1.00 99.99 O ATOM 696 OE2 GLU 91 27.506 85.353 19.195 1.00 99.99 O ATOM 697 N LEU 92 24.650 80.008 18.698 1.00 99.99 N ATOM 698 CA LEU 92 24.304 79.467 17.415 1.00 99.99 C ATOM 699 C LEU 92 22.937 78.856 17.413 1.00 99.99 C ATOM 700 O LEU 92 22.132 79.132 16.526 1.00 99.99 O ATOM 701 CB LEU 92 25.311 78.394 16.986 1.00 99.99 C ATOM 702 CG LEU 92 26.728 78.976 16.842 1.00 99.99 C ATOM 703 CD1 LEU 92 27.741 77.904 16.433 1.00 99.99 C ATOM 704 CD2 LEU 92 26.731 80.187 15.893 1.00 99.99 C ATOM 705 N CYS 93 22.641 78.003 18.412 1.00 99.99 N ATOM 706 CA CYS 93 21.392 77.298 18.429 1.00 99.99 C ATOM 707 C CYS 93 20.247 78.215 18.725 1.00 99.99 C ATOM 708 O CYS 93 19.158 78.029 18.186 1.00 99.99 O ATOM 709 CB CYS 93 21.380 76.099 19.389 1.00 99.99 C ATOM 710 SG CYS 93 22.580 74.833 18.864 1.00 99.99 S ATOM 711 N LEU 94 20.447 79.240 19.578 1.00 99.99 N ATOM 712 CA LEU 94 19.333 80.089 19.897 1.00 99.99 C ATOM 713 C LEU 94 18.844 80.717 18.630 1.00 99.99 C ATOM 714 O LEU 94 17.637 80.797 18.403 1.00 99.99 O ATOM 715 CB LEU 94 19.662 81.236 20.869 1.00 99.99 C ATOM 716 CG LEU 94 19.925 80.776 22.313 1.00 99.99 C ATOM 717 CD1 LEU 94 20.192 81.974 23.239 1.00 99.99 C ATOM 718 CD2 LEU 94 18.801 79.858 22.824 1.00 99.99 C ATOM 719 N LYS 95 19.776 81.159 17.766 1.00 99.99 N ATOM 720 CA LYS 95 19.430 81.732 16.495 1.00 99.99 C ATOM 721 C LYS 95 18.361 82.768 16.642 1.00 99.99 C ATOM 722 O LYS 95 17.240 82.576 16.178 1.00 99.99 O ATOM 723 CB LYS 95 18.948 80.696 15.466 1.00 99.99 C ATOM 724 CG LYS 95 18.575 81.299 14.108 1.00 99.99 C ATOM 725 CD LYS 95 19.757 81.854 13.312 1.00 99.99 C ATOM 726 CE LYS 95 20.012 83.346 13.534 1.00 99.99 C ATOM 727 NZ LYS 95 21.152 83.788 12.703 1.00 99.99 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 60.31 60.3 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 67.15 58.9 56 100.0 56 ARMSMC BURIED . . . . . . . . 37.66 63.6 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.76 63.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 68.49 65.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 73.18 60.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 61.27 72.7 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 78.95 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 72.81 35.3 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 87.47 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 33.56 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.03 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 79.09 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 67.52 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 96.83 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.00 0.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 67.00 0.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 73.24 0.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 31.45 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.27 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.27 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0567 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.55 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.24 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.42 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.68 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.56 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.34 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.03 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.91 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.28 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.38 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.80 219 100.0 219 CRMSALL BURIED . . . . . . . . 1.88 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.319 0.968 0.968 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 98.072 0.963 0.964 29 100.0 29 ERRCA BURIED . . . . . . . . 98.971 0.980 0.980 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.203 0.965 0.966 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 97.973 0.961 0.962 142 100.0 142 ERRMC BURIED . . . . . . . . 98.796 0.977 0.977 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 96.766 0.939 0.942 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 97.068 0.945 0.947 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 96.146 0.928 0.931 103 100.0 103 ERRSC BURIED . . . . . . . . 98.363 0.968 0.969 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.581 0.954 0.956 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 97.185 0.947 0.949 219 100.0 219 ERRALL BURIED . . . . . . . . 98.615 0.973 0.974 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 30 34 38 40 40 40 DISTCA CA (P) 42.50 75.00 85.00 95.00 100.00 40 DISTCA CA (RMS) 0.70 1.02 1.27 1.72 2.27 DISTCA ALL (N) 90 190 224 265 297 303 303 DISTALL ALL (P) 29.70 62.71 73.93 87.46 98.02 303 DISTALL ALL (RMS) 0.70 1.11 1.39 2.00 3.04 DISTALL END of the results output