####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS291_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS291_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 76 - 95 4.56 11.70 LCS_AVERAGE: 44.62 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 86 - 95 2.00 12.92 LCS_AVERAGE: 18.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 78 - 83 0.95 15.51 LONGEST_CONTINUOUS_SEGMENT: 6 88 - 93 0.92 14.46 LCS_AVERAGE: 11.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 3 13 0 3 3 3 4 4 6 9 10 13 13 15 20 22 22 24 25 31 33 36 LCS_GDT S 57 S 57 3 4 13 3 3 3 4 4 6 8 10 11 13 13 19 20 22 22 27 28 31 33 36 LCS_GDT C 58 C 58 3 4 13 3 3 4 4 4 4 5 6 6 8 8 11 15 15 16 18 18 19 27 27 LCS_GDT K 59 K 59 3 4 15 3 3 4 4 5 6 8 10 11 13 19 22 25 27 30 31 31 32 34 36 LCS_GDT G 60 G 60 4 4 15 2 3 5 5 7 9 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT R 61 R 61 4 4 15 3 4 5 5 7 9 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT C 62 C 62 4 4 15 3 3 4 4 5 8 9 13 18 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT F 63 F 63 4 4 15 3 3 4 4 4 9 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT E 64 E 64 3 4 15 3 3 4 4 5 9 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT L 65 L 65 3 4 15 3 3 4 4 9 9 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT Q 66 Q 66 3 4 15 3 4 5 8 10 10 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT E 67 E 67 4 5 17 3 6 7 8 10 10 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT V 68 V 68 4 5 17 3 4 5 5 6 9 10 13 16 19 23 25 26 28 30 31 31 32 34 36 LCS_GDT G 69 G 69 4 5 17 3 4 5 5 6 8 10 11 12 13 14 16 21 24 27 31 31 32 34 36 LCS_GDT P 70 P 70 4 7 17 2 4 5 6 7 8 10 11 12 13 14 16 17 20 23 27 30 32 34 36 LCS_GDT P 71 P 71 4 7 17 0 3 5 6 7 8 10 11 12 13 14 16 16 16 18 20 22 28 29 33 LCS_GDT D 72 D 72 3 7 17 3 3 5 6 7 8 10 11 12 13 14 16 16 16 18 20 21 23 27 29 LCS_GDT C 73 C 73 3 7 17 3 3 4 5 7 8 10 11 12 13 14 16 16 16 18 20 21 22 27 29 LCS_GDT R 74 R 74 3 7 17 3 3 4 6 7 9 10 11 12 13 14 16 16 20 26 28 31 32 34 36 LCS_GDT C 75 C 75 3 9 19 3 4 7 8 8 10 11 11 13 13 14 16 16 16 22 28 30 32 34 36 LCS_GDT D 76 D 76 4 9 20 3 4 4 7 10 10 11 13 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT N 77 N 77 4 9 20 3 4 5 7 10 10 11 13 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT L 78 L 78 6 9 20 3 4 7 8 10 10 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT C 79 C 79 6 9 20 4 6 7 8 10 10 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT K 80 K 80 6 9 20 4 6 7 8 10 10 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT S 81 S 81 6 9 20 4 6 7 8 10 10 11 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT Y 82 Y 82 6 9 20 4 6 7 8 10 10 11 12 15 20 24 25 26 28 30 31 31 32 34 36 LCS_GDT S 83 S 83 6 9 20 4 6 7 8 10 10 11 13 16 20 24 25 26 28 30 31 31 32 34 36 LCS_GDT S 84 S 84 4 8 20 3 4 4 5 5 8 12 15 16 18 21 23 26 28 30 31 31 32 34 36 LCS_GDT C 85 C 85 5 9 20 4 5 6 7 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT C 86 C 86 5 10 20 4 5 6 7 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT H 87 H 87 5 10 20 4 5 6 7 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT D 88 D 88 6 10 20 4 5 7 8 9 10 12 15 18 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT F 89 F 89 6 10 20 4 5 7 8 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT D 90 D 90 6 10 20 4 5 7 8 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT E 91 E 91 6 10 20 4 5 7 8 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT L 92 L 92 6 10 20 3 5 7 8 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT C 93 C 93 6 10 20 3 5 7 8 9 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 LCS_GDT L 94 L 94 5 10 20 3 4 7 8 9 10 12 15 15 17 20 23 26 28 30 31 31 32 34 36 LCS_GDT K 95 K 95 5 10 20 3 4 7 8 9 10 12 15 15 17 21 23 26 28 30 31 31 32 34 36 LCS_AVERAGE LCS_A: 24.65 ( 11.12 18.19 44.62 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 6 7 8 10 10 12 15 19 22 24 25 26 28 30 31 31 32 34 36 GDT PERCENT_AT 10.00 15.00 17.50 20.00 25.00 25.00 30.00 37.50 47.50 55.00 60.00 62.50 65.00 70.00 75.00 77.50 77.50 80.00 85.00 90.00 GDT RMS_LOCAL 0.31 0.52 0.77 1.04 1.79 1.79 2.48 2.86 3.54 3.74 3.93 4.03 4.20 4.55 4.87 5.24 5.24 5.53 6.14 6.61 GDT RMS_ALL_AT 11.32 16.01 16.19 15.87 13.91 13.91 11.40 11.47 9.61 9.69 9.61 9.56 9.29 9.28 9.12 8.76 8.76 8.59 8.25 8.00 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 67 E 67 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 22.744 0 0.293 0.293 23.748 0.000 0.000 LGA S 57 S 57 18.841 0 0.563 0.764 20.406 0.000 0.000 LGA C 58 C 58 17.902 0 0.249 0.250 22.167 0.000 0.000 LGA K 59 K 59 14.090 0 0.089 0.678 21.736 0.000 0.000 LGA G 60 G 60 9.333 0 0.683 0.683 10.616 1.786 1.786 LGA R 61 R 61 7.977 0 0.695 1.068 18.593 8.333 3.030 LGA C 62 C 62 5.191 0 0.000 0.075 6.758 40.119 33.333 LGA F 63 F 63 4.345 0 0.584 0.441 8.118 35.952 22.165 LGA E 64 E 64 3.203 0 0.592 1.465 6.318 45.357 41.481 LGA L 65 L 65 2.743 0 0.119 1.396 5.331 47.262 43.333 LGA Q 66 Q 66 6.739 0 0.594 0.695 12.550 13.690 7.037 LGA E 67 E 67 8.787 0 0.593 1.270 9.906 2.976 1.852 LGA V 68 V 68 10.488 0 0.045 0.984 12.492 0.357 1.293 LGA G 69 G 69 15.281 0 0.150 0.150 16.355 0.000 0.000 LGA P 70 P 70 20.789 0 0.067 0.243 22.049 0.000 0.000 LGA P 71 P 71 25.235 0 0.307 0.617 28.526 0.000 0.000 LGA D 72 D 72 24.331 3 0.682 0.632 24.818 0.000 0.000 LGA C 73 C 73 20.361 0 0.057 0.632 21.893 0.000 0.000 LGA R 74 R 74 13.993 0 0.571 1.143 17.903 0.000 0.000 LGA C 75 C 75 11.957 0 0.591 0.542 16.890 0.714 0.476 LGA D 76 D 76 5.499 0 0.644 1.193 7.636 14.167 29.167 LGA N 77 N 77 9.386 0 0.090 0.347 11.578 2.143 1.071 LGA L 78 L 78 10.932 0 0.148 1.249 15.223 0.119 0.060 LGA C 79 C 79 7.861 0 0.270 0.693 9.292 6.190 6.032 LGA K 80 K 80 9.890 0 0.032 0.940 17.228 0.952 0.423 LGA S 81 S 81 11.901 0 0.184 0.727 15.059 0.000 0.000 LGA Y 82 Y 82 10.079 0 0.116 1.387 16.134 0.595 0.238 LGA S 83 S 83 7.009 0 0.295 0.645 7.926 16.190 13.651 LGA S 84 S 84 3.862 0 0.097 0.607 4.441 48.690 44.841 LGA C 85 C 85 3.602 0 0.581 0.740 6.713 48.452 38.095 LGA C 86 C 86 1.692 0 0.029 0.738 5.331 79.405 68.095 LGA H 87 H 87 0.882 0 0.051 1.173 7.086 77.738 53.762 LGA D 88 D 88 3.281 0 0.418 1.114 8.866 57.262 35.417 LGA F 89 F 89 2.251 0 0.127 0.116 2.697 66.905 73.896 LGA D 90 D 90 1.557 0 0.041 0.671 4.643 81.667 70.119 LGA E 91 E 91 0.662 0 0.172 0.786 2.939 88.214 78.095 LGA L 92 L 92 2.584 0 0.194 0.302 6.116 64.881 47.202 LGA C 93 C 93 3.201 0 0.051 0.747 7.719 55.357 43.333 LGA L 94 L 94 3.604 0 0.458 1.366 9.940 46.905 28.036 LGA K 95 K 95 2.514 0 0.608 1.279 9.907 41.667 36.243 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 7.741 7.584 8.502 24.851 20.589 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 15 2.86 37.500 33.505 0.506 LGA_LOCAL RMSD: 2.865 Number of atoms: 15 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.470 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.741 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.284607 * X + -0.423793 * Y + -0.859883 * Z + -159.415558 Y_new = -0.723299 * X + -0.493755 * Y + 0.482747 * Z + -247.056305 Z_new = -0.629156 * X + 0.759346 * Y + -0.166003 * Z + 178.630829 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.945674 0.680467 1.786023 [DEG: -111.4789 38.9879 102.3316 ] ZXZ: -2.082358 1.737571 -0.691909 [DEG: -119.3103 99.5555 -39.6435 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS291_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS291_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 15 2.86 33.505 7.74 REMARK ---------------------------------------------------------- MOLECULE T0543TS291_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 17.079 75.700 2.894 1.00 1.00 N ATOM 423 CA GLY 56 17.845 75.394 4.068 1.00 1.00 C ATOM 424 C GLY 56 18.564 76.654 4.426 1.00 1.00 C ATOM 425 O GLY 56 18.798 76.926 5.603 1.00 1.00 O ATOM 426 N SER 57 18.942 77.468 3.418 1.00 1.00 N ATOM 427 CA SER 57 19.643 78.678 3.738 1.00 1.00 C ATOM 428 C SER 57 18.748 79.539 4.568 1.00 1.00 C ATOM 429 O SER 57 19.143 80.036 5.620 1.00 1.00 O ATOM 430 CB SER 57 20.029 79.427 2.461 1.00 1.00 C ATOM 431 OG SER 57 20.985 78.698 1.711 1.00 1.00 O ATOM 432 N CYS 58 17.506 79.753 4.084 1.00 1.00 N ATOM 433 CA CYS 58 16.549 80.534 4.811 1.00 1.00 C ATOM 434 C CYS 58 16.272 79.806 6.088 1.00 1.00 C ATOM 435 O CYS 58 16.104 80.422 7.139 1.00 1.00 O ATOM 436 CB CYS 58 15.260 80.692 4.002 1.00 1.00 C ATOM 437 SG CYS 58 15.424 81.732 2.531 1.00 1.00 S ATOM 438 N LYS 59 16.192 78.462 6.022 1.00 1.00 N ATOM 439 CA LYS 59 15.933 77.701 7.211 1.00 1.00 C ATOM 440 C LYS 59 16.636 76.388 7.080 1.00 1.00 C ATOM 441 O LYS 59 16.686 75.803 5.999 1.00 1.00 O ATOM 442 CB LYS 59 14.430 77.468 7.381 1.00 1.00 C ATOM 443 CG LYS 59 13.821 76.555 6.329 1.00 1.00 C ATOM 444 CD LYS 59 12.331 76.366 6.559 1.00 1.00 C ATOM 445 CE LYS 59 11.724 75.440 5.517 1.00 1.00 C ATOM 446 NZ LYS 59 10.262 75.250 5.726 1.00 1.00 N ATOM 447 N GLY 60 17.225 75.903 8.194 1.00 1.00 N ATOM 448 CA GLY 60 17.881 74.628 8.170 1.00 1.00 C ATOM 449 C GLY 60 17.990 74.148 9.582 1.00 1.00 C ATOM 450 O GLY 60 17.997 74.945 10.519 1.00 1.00 O ATOM 451 N ARG 61 18.078 72.816 9.767 1.00 1.00 N ATOM 452 CA ARG 61 18.208 72.273 11.088 1.00 1.00 C ATOM 453 C ARG 61 19.154 71.119 11.011 1.00 1.00 C ATOM 454 O ARG 61 19.362 70.547 9.942 1.00 1.00 O ATOM 455 CB ARG 61 16.849 71.799 11.608 1.00 1.00 C ATOM 456 CG ARG 61 15.810 72.903 11.725 1.00 1.00 C ATOM 457 CD ARG 61 14.501 72.372 12.286 1.00 1.00 C ATOM 458 NE ARG 61 13.799 71.523 11.326 1.00 1.00 N ATOM 459 CZ ARG 61 12.755 70.759 11.629 1.00 1.00 C ATOM 460 NH1 ARG 61 12.180 70.020 10.690 1.00 1.00 H ATOM 461 NH2 ARG 61 12.288 70.736 12.870 1.00 1.00 H ATOM 462 N CYS 62 19.776 70.762 12.153 1.00 1.00 N ATOM 463 CA CYS 62 20.673 69.644 12.163 1.00 1.00 C ATOM 464 C CYS 62 20.343 68.811 13.360 1.00 1.00 C ATOM 465 O CYS 62 20.277 69.318 14.480 1.00 1.00 O ATOM 466 CB CYS 62 22.125 70.121 12.245 1.00 1.00 C ATOM 467 SG CYS 62 22.663 71.116 10.834 1.00 1.00 S ATOM 468 N PHE 63 20.103 67.502 13.148 1.00 1.00 N ATOM 469 CA PHE 63 19.811 66.637 14.255 1.00 1.00 C ATOM 470 C PHE 63 20.899 65.610 14.294 1.00 1.00 C ATOM 471 O PHE 63 21.361 65.150 13.251 1.00 1.00 O ATOM 472 CB PHE 63 18.449 65.966 14.066 1.00 1.00 C ATOM 473 CG PHE 63 17.295 66.927 14.058 1.00 1.00 C ATOM 474 CD1 PHE 63 16.829 67.462 12.870 1.00 1.00 C ATOM 475 CD2 PHE 63 16.675 67.296 15.239 1.00 1.00 C ATOM 476 CE1 PHE 63 15.767 68.347 12.863 1.00 1.00 C ATOM 477 CE2 PHE 63 15.614 68.181 15.232 1.00 1.00 C ATOM 478 CZ PHE 63 15.159 68.705 14.051 1.00 1.00 C ATOM 479 N GLU 64 21.356 65.234 15.506 1.00 1.00 N ATOM 480 CA GLU 64 22.402 64.254 15.590 1.00 1.00 C ATOM 481 C GLU 64 21.908 62.985 14.974 1.00 1.00 C ATOM 482 O GLU 64 22.608 62.350 14.187 1.00 1.00 O ATOM 483 CB GLU 64 22.781 64.000 17.051 1.00 1.00 C ATOM 484 CG GLU 64 23.439 65.187 17.737 1.00 1.00 C ATOM 485 CD GLU 64 22.433 66.224 18.198 1.00 1.00 C ATOM 486 OE1 GLU 64 21.218 65.986 18.034 1.00 1.00 O ATOM 487 OE2 GLU 64 22.861 67.274 18.722 1.00 1.00 O ATOM 488 N LEU 65 20.678 62.574 15.337 1.00 1.00 N ATOM 489 CA LEU 65 20.106 61.378 14.785 1.00 1.00 C ATOM 490 C LEU 65 20.113 61.512 13.298 1.00 1.00 C ATOM 491 O LEU 65 20.502 60.591 12.584 1.00 1.00 O ATOM 492 CB LEU 65 18.672 61.191 15.282 1.00 1.00 C ATOM 493 CG LEU 65 17.928 59.961 14.758 1.00 1.00 C ATOM 494 CD1 LEU 65 18.633 58.683 15.188 1.00 1.00 C ATOM 495 CD2 LEU 65 16.506 59.923 15.298 1.00 1.00 C ATOM 496 N GLN 66 19.655 62.672 12.791 1.00 1.00 N ATOM 497 CA GLN 66 19.658 62.901 11.375 1.00 1.00 C ATOM 498 C GLN 66 21.051 62.670 10.889 1.00 1.00 C ATOM 499 O GLN 66 21.261 62.008 9.875 1.00 1.00 O ATOM 500 CB GLN 66 19.224 64.334 11.063 1.00 1.00 C ATOM 501 CG GLN 66 19.155 64.652 9.578 1.00 1.00 C ATOM 502 CD GLN 66 18.702 66.074 9.307 1.00 1.00 C ATOM 503 OE1 GLN 66 18.513 66.863 10.233 1.00 1.00 O ATOM 504 NE2 GLN 66 18.525 66.405 8.034 1.00 1.00 N ATOM 505 N GLU 67 22.052 63.234 11.597 1.00 1.00 N ATOM 506 CA GLU 67 23.412 63.025 11.191 1.00 1.00 C ATOM 507 C GLU 67 23.694 61.558 11.272 1.00 1.00 C ATOM 508 O GLU 67 24.485 61.024 10.494 1.00 1.00 O ATOM 509 CB GLU 67 24.369 63.788 12.110 1.00 1.00 C ATOM 510 CG GLU 67 25.828 63.706 11.693 1.00 1.00 C ATOM 511 CD GLU 67 26.732 64.553 12.566 1.00 1.00 C ATOM 512 OE1 GLU 67 26.214 65.221 13.486 1.00 1.00 O ATOM 513 OE2 GLU 67 27.959 64.549 12.332 1.00 1.00 O ATOM 514 N VAL 68 23.064 60.869 12.244 1.00 1.00 N ATOM 515 CA VAL 68 23.257 59.456 12.373 1.00 1.00 C ATOM 516 C VAL 68 22.019 58.883 12.987 1.00 1.00 C ATOM 517 O VAL 68 21.069 59.607 13.281 1.00 1.00 O ATOM 518 CB VAL 68 24.468 59.131 13.267 1.00 1.00 C ATOM 519 CG1 VAL 68 25.752 59.642 12.632 1.00 1.00 C ATOM 520 CG2 VAL 68 24.314 59.786 14.632 1.00 1.00 C ATOM 521 N GLY 69 21.992 57.547 13.176 1.00 1.00 N ATOM 522 CA GLY 69 20.859 56.930 13.802 1.00 1.00 C ATOM 523 C GLY 69 19.856 56.631 12.734 1.00 1.00 C ATOM 524 O GLY 69 19.987 57.063 11.591 1.00 1.00 O ATOM 525 N PRO 70 18.855 55.876 13.097 1.00 1.00 N ATOM 526 CA PRO 70 17.815 55.551 12.158 1.00 1.00 C ATOM 527 C PRO 70 17.018 56.761 11.795 1.00 1.00 C ATOM 528 O PRO 70 17.049 57.745 12.531 1.00 1.00 O ATOM 529 CB PRO 70 16.959 54.520 12.896 1.00 1.00 C ATOM 530 CG PRO 70 17.849 53.998 13.974 1.00 1.00 C ATOM 531 CD PRO 70 18.739 55.142 14.369 1.00 1.00 C ATOM 532 N PRO 71 16.339 56.709 10.681 1.00 1.00 N ATOM 533 CA PRO 71 15.507 57.822 10.305 1.00 1.00 C ATOM 534 C PRO 71 14.605 58.202 11.436 1.00 1.00 C ATOM 535 O PRO 71 14.367 59.392 11.632 1.00 1.00 O ATOM 536 CB PRO 71 14.718 57.304 9.101 1.00 1.00 C ATOM 537 CG PRO 71 15.620 56.297 8.469 1.00 1.00 C ATOM 538 CD PRO 71 16.283 55.563 9.601 1.00 1.00 C ATOM 539 N ASP 72 14.080 57.208 12.182 1.00 1.00 N ATOM 540 CA ASP 72 13.250 57.500 13.316 1.00 1.00 C ATOM 541 C ASP 72 14.161 57.684 14.488 1.00 1.00 C ATOM 542 O ASP 72 13.705 57.959 15.596 1.00 1.00 O ATOM 543 CB ASP 72 12.278 56.348 13.578 1.00 1.00 C ATOM 544 CG ASP 72 12.986 55.060 13.948 1.00 1.00 C ATOM 545 OD1 ASP 72 14.235 55.053 13.966 1.00 1.00 O ATOM 546 OD2 ASP 72 12.292 54.057 14.218 1.00 1.00 O ATOM 547 N CYS 73 15.484 57.517 14.282 1.00 1.00 N ATOM 548 CA CYS 73 16.386 57.692 15.384 1.00 1.00 C ATOM 549 C CYS 73 16.823 59.122 15.422 1.00 1.00 C ATOM 550 O CYS 73 17.377 59.639 14.452 1.00 1.00 O ATOM 551 CB CYS 73 17.611 56.791 15.223 1.00 1.00 C ATOM 552 SG CYS 73 18.820 56.926 16.559 1.00 1.00 S ATOM 553 N ARG 74 16.556 59.804 16.554 1.00 1.00 N ATOM 554 CA ARG 74 16.972 61.169 16.716 1.00 1.00 C ATOM 555 C ARG 74 17.751 61.235 17.990 1.00 1.00 C ATOM 556 O ARG 74 17.848 62.296 18.608 1.00 1.00 O ATOM 557 CB ARG 74 15.755 62.094 16.788 1.00 1.00 C ATOM 558 CG ARG 74 14.878 61.871 18.009 1.00 1.00 C ATOM 559 CD ARG 74 13.597 62.685 17.925 1.00 1.00 C ATOM 560 NE ARG 74 12.739 62.241 16.828 1.00 1.00 N ATOM 561 CZ ARG 74 11.698 62.930 16.370 1.00 1.00 C ATOM 562 NH1 ARG 74 10.974 62.447 15.368 1.00 1.00 H ATOM 563 NH2 ARG 74 11.383 64.097 16.914 1.00 1.00 H ATOM 564 N CYS 75 18.313 60.093 18.439 1.00 1.00 N ATOM 565 CA CYS 75 19.074 60.117 19.656 1.00 1.00 C ATOM 566 C CYS 75 20.220 61.065 19.483 1.00 1.00 C ATOM 567 O CYS 75 20.731 61.244 18.379 1.00 1.00 O ATOM 568 CB CYS 75 19.612 58.721 19.978 1.00 1.00 C ATOM 569 SG CYS 75 18.336 57.495 20.345 1.00 1.00 S ATOM 570 N ASP 76 20.635 61.716 20.588 1.00 1.00 N ATOM 571 CA ASP 76 21.747 62.622 20.551 1.00 1.00 C ATOM 572 C ASP 76 22.799 62.072 21.462 1.00 1.00 C ATOM 573 O ASP 76 23.800 62.733 21.734 1.00 1.00 O ATOM 574 CB ASP 76 21.321 64.014 21.020 1.00 1.00 C ATOM 575 CG ASP 76 20.442 64.726 20.011 1.00 1.00 C ATOM 576 OD1 ASP 76 20.414 64.294 18.839 1.00 1.00 O ATOM 577 OD2 ASP 76 19.782 65.716 20.391 1.00 1.00 O ATOM 578 N ASN 77 22.590 60.844 21.983 1.00 1.00 N ATOM 579 CA ASN 77 23.576 60.268 22.851 1.00 1.00 C ATOM 580 C ASN 77 24.897 60.309 22.149 1.00 1.00 C ATOM 581 O ASN 77 25.935 60.527 22.770 1.00 1.00 O ATOM 582 CB ASN 77 23.216 58.818 23.183 1.00 1.00 C ATOM 583 CG ASN 77 22.050 58.714 24.147 1.00 1.00 C ATOM 584 OD1 ASN 77 21.682 59.690 24.799 1.00 1.00 O ATOM 585 ND2 ASN 77 21.464 57.525 24.238 1.00 1.00 N ATOM 586 N LEU 78 24.887 60.073 20.819 1.00 1.00 N ATOM 587 CA LEU 78 26.101 60.121 20.054 1.00 1.00 C ATOM 588 C LEU 78 26.577 61.541 20.044 1.00 1.00 C ATOM 589 O LEU 78 27.748 61.805 19.776 1.00 1.00 O ATOM 590 CB LEU 78 25.850 59.646 18.622 1.00 1.00 C ATOM 591 CG LEU 78 25.471 58.174 18.452 1.00 1.00 C ATOM 592 CD1 LEU 78 25.135 57.869 17.001 1.00 1.00 C ATOM 593 CD2 LEU 78 26.621 57.272 18.873 1.00 1.00 C ATOM 594 N CYS 79 25.668 62.500 20.316 1.00 1.00 N ATOM 595 CA CYS 79 26.070 63.878 20.351 1.00 1.00 C ATOM 596 C CYS 79 26.119 64.306 21.785 1.00 1.00 C ATOM 597 O CYS 79 26.118 65.500 22.085 1.00 1.00 O ATOM 598 CB CYS 79 25.071 64.747 19.585 1.00 1.00 C ATOM 599 SG CYS 79 24.948 64.368 17.822 1.00 1.00 S ATOM 600 N LYS 80 26.141 63.329 22.717 1.00 1.00 N ATOM 601 CA LYS 80 26.220 63.656 24.114 1.00 1.00 C ATOM 602 C LYS 80 27.370 64.596 24.301 1.00 1.00 C ATOM 603 O LYS 80 27.250 65.601 25.001 1.00 1.00 O ATOM 604 CB LYS 80 26.443 62.393 24.948 1.00 1.00 C ATOM 605 CG LYS 80 26.500 62.642 26.447 1.00 1.00 C ATOM 606 CD LYS 80 26.659 61.341 27.217 1.00 1.00 C ATOM 607 CE LYS 80 26.763 61.593 28.711 1.00 1.00 C ATOM 608 NZ LYS 80 26.898 60.326 29.481 1.00 1.00 N ATOM 609 N SER 81 28.533 64.277 23.693 1.00 1.00 N ATOM 610 CA SER 81 29.668 65.154 23.800 1.00 1.00 C ATOM 611 C SER 81 29.375 66.379 22.988 1.00 1.00 C ATOM 612 O SER 81 30.154 67.331 22.982 1.00 1.00 O ATOM 613 CB SER 81 30.928 64.468 23.269 1.00 1.00 C ATOM 614 OG SER 81 30.835 64.241 21.872 1.00 1.00 O ATOM 615 N TYR 82 28.239 66.374 22.258 1.00 1.00 N ATOM 616 CA TYR 82 27.874 67.518 21.470 1.00 1.00 C ATOM 617 C TYR 82 27.080 68.435 22.347 1.00 1.00 C ATOM 618 O TYR 82 27.024 69.640 22.103 1.00 1.00 O ATOM 619 CB TYR 82 27.034 67.091 20.264 1.00 1.00 C ATOM 620 CG TYR 82 26.715 68.219 19.310 1.00 1.00 C ATOM 621 CD1 TYR 82 27.691 68.737 18.469 1.00 1.00 C ATOM 622 CD2 TYR 82 25.437 68.763 19.254 1.00 1.00 C ATOM 623 CE1 TYR 82 27.408 69.769 17.594 1.00 1.00 C ATOM 624 CE2 TYR 82 25.136 69.794 18.384 1.00 1.00 C ATOM 625 CZ TYR 82 26.135 70.296 17.550 1.00 1.00 C ATOM 626 OH TYR 82 25.851 71.322 16.680 1.00 1.00 H ATOM 627 N SER 83 26.416 67.888 23.390 1.00 1.00 N ATOM 628 CA SER 83 25.663 68.733 24.275 1.00 1.00 C ATOM 629 C SER 83 26.563 69.819 24.779 1.00 1.00 C ATOM 630 O SER 83 27.665 69.554 25.257 1.00 1.00 O ATOM 631 CB SER 83 25.128 67.926 25.460 1.00 1.00 C ATOM 632 OG SER 83 24.426 68.757 26.367 1.00 1.00 O ATOM 633 N SER 84 26.116 71.090 24.659 1.00 1.00 N ATOM 634 CA SER 84 26.892 72.195 25.152 1.00 1.00 C ATOM 635 C SER 84 28.259 72.109 24.543 1.00 1.00 C ATOM 636 O SER 84 29.236 72.588 25.119 1.00 1.00 O ATOM 637 CB SER 84 27.002 72.135 26.677 1.00 1.00 C ATOM 638 OG SER 84 25.722 72.206 27.284 1.00 1.00 O ATOM 639 N CYS 85 28.366 71.464 23.361 1.00 1.00 N ATOM 640 CA CYS 85 29.633 71.369 22.690 1.00 1.00 C ATOM 641 C CYS 85 30.151 72.760 22.485 1.00 1.00 C ATOM 642 O CYS 85 31.324 73.036 22.735 1.00 1.00 O ATOM 643 CB CYS 85 29.472 70.672 21.338 1.00 1.00 C ATOM 644 SG CYS 85 28.264 71.446 20.237 1.00 1.00 S ATOM 645 N CYS 86 29.285 73.676 21.997 1.00 1.00 N ATOM 646 CA CYS 86 29.703 75.040 21.810 1.00 1.00 C ATOM 647 C CYS 86 30.011 75.623 23.156 1.00 1.00 C ATOM 648 O CYS 86 29.454 75.197 24.167 1.00 1.00 O ATOM 649 CB CYS 86 28.594 75.852 21.138 1.00 1.00 C ATOM 650 SG CYS 86 29.077 77.530 20.671 1.00 1.00 S ATOM 651 N HIS 87 30.938 76.606 23.204 1.00 1.00 N ATOM 652 CA HIS 87 31.259 77.243 24.451 1.00 1.00 C ATOM 653 C HIS 87 30.047 77.991 24.916 1.00 1.00 C ATOM 654 O HIS 87 29.790 78.082 26.116 1.00 1.00 O ATOM 655 CB HIS 87 32.426 78.216 24.270 1.00 1.00 C ATOM 656 CG HIS 87 32.846 78.899 25.536 1.00 1.00 C ATOM 657 ND1 HIS 87 33.469 78.233 26.569 1.00 1.00 N ATOM 658 CD2 HIS 87 32.772 80.255 26.057 1.00 1.00 C ATOM 659 CE1 HIS 87 33.721 79.104 27.562 1.00 1.00 C ATOM 660 NE2 HIS 87 33.305 80.319 27.261 1.00 1.00 N ATOM 661 N ASP 88 29.276 78.570 23.971 1.00 1.00 N ATOM 662 CA ASP 88 28.084 79.282 24.342 1.00 1.00 C ATOM 663 C ASP 88 26.923 78.658 23.624 1.00 1.00 C ATOM 664 O ASP 88 26.718 78.910 22.437 1.00 1.00 O ATOM 665 CB ASP 88 28.197 80.757 23.951 1.00 1.00 C ATOM 666 CG ASP 88 27.034 81.586 24.458 1.00 1.00 C ATOM 667 OD1 ASP 88 25.885 81.101 24.390 1.00 1.00 O ATOM 668 OD2 ASP 88 27.272 82.720 24.925 1.00 1.00 O ATOM 669 N PHE 89 26.138 77.805 24.318 1.00 1.00 N ATOM 670 CA PHE 89 24.991 77.215 23.683 1.00 1.00 C ATOM 671 C PHE 89 23.960 78.290 23.502 1.00 1.00 C ATOM 672 O PHE 89 23.273 78.334 22.484 1.00 1.00 O ATOM 673 CB PHE 89 24.418 76.091 24.549 1.00 1.00 C ATOM 674 CG PHE 89 23.223 75.410 23.946 1.00 1.00 C ATOM 675 CD1 PHE 89 23.377 74.481 22.932 1.00 1.00 C ATOM 676 CD2 PHE 89 21.946 75.697 24.395 1.00 1.00 C ATOM 677 CE1 PHE 89 22.276 73.855 22.377 1.00 1.00 C ATOM 678 CE2 PHE 89 20.846 75.069 23.840 1.00 1.00 C ATOM 679 CZ PHE 89 21.008 74.152 22.835 1.00 1.00 C ATOM 680 N ASP 90 23.812 79.180 24.509 1.00 1.00 N ATOM 681 CA ASP 90 22.855 80.248 24.411 1.00 1.00 C ATOM 682 C ASP 90 23.042 80.920 23.081 1.00 1.00 C ATOM 683 O ASP 90 22.067 81.230 22.397 1.00 1.00 O ATOM 684 CB ASP 90 23.068 81.262 25.536 1.00 1.00 C ATOM 685 CG ASP 90 22.627 80.736 26.887 1.00 1.00 C ATOM 686 OD1 ASP 90 21.954 79.684 26.924 1.00 1.00 O ATOM 687 OD2 ASP 90 22.954 81.374 27.910 1.00 1.00 O ATOM 688 N GLU 91 24.307 81.186 22.685 1.00 1.00 N ATOM 689 CA GLU 91 24.549 81.802 21.409 1.00 1.00 C ATOM 690 C GLU 91 24.041 80.884 20.340 1.00 1.00 C ATOM 691 O GLU 91 23.553 81.336 19.304 1.00 1.00 O ATOM 692 CB GLU 91 26.045 82.045 21.206 1.00 1.00 C ATOM 693 CG GLU 91 26.621 83.143 22.086 1.00 1.00 C ATOM 694 CD GLU 91 28.125 83.271 21.949 1.00 1.00 C ATOM 695 OE1 GLU 91 28.727 82.454 21.221 1.00 1.00 O ATOM 696 OE2 GLU 91 28.702 84.189 22.567 1.00 1.00 O ATOM 697 N LEU 92 24.165 79.555 20.556 1.00 1.00 N ATOM 698 CA LEU 92 23.673 78.605 19.594 1.00 1.00 C ATOM 699 C LEU 92 22.182 78.753 19.506 1.00 1.00 C ATOM 700 O LEU 92 21.625 78.841 18.413 1.00 1.00 O ATOM 701 CB LEU 92 24.024 77.179 20.022 1.00 1.00 C ATOM 702 CG LEU 92 25.501 76.792 19.947 1.00 1.00 C ATOM 703 CD1 LEU 92 25.732 75.427 20.576 1.00 1.00 C ATOM 704 CD2 LEU 92 25.970 76.734 18.501 1.00 1.00 C ATOM 705 N CYS 93 21.488 78.758 20.667 1.00 1.00 N ATOM 706 CA CYS 93 20.062 78.936 20.659 1.00 1.00 C ATOM 707 C CYS 93 19.757 80.259 20.020 1.00 1.00 C ATOM 708 O CYS 93 18.804 80.383 19.257 1.00 1.00 O ATOM 709 CB CYS 93 19.510 78.916 22.085 1.00 1.00 C ATOM 710 SG CYS 93 20.210 80.179 23.174 1.00 1.00 S ATOM 711 N LEU 94 20.561 81.300 20.346 1.00 1.00 N ATOM 712 CA LEU 94 20.357 82.597 19.760 1.00 1.00 C ATOM 713 C LEU 94 20.590 82.486 18.279 1.00 1.00 C ATOM 714 O LEU 94 21.581 81.905 17.845 1.00 1.00 O ATOM 715 CB LEU 94 21.332 83.615 20.357 1.00 1.00 C ATOM 716 CG LEU 94 21.172 85.062 19.887 1.00 1.00 C ATOM 717 CD1 LEU 94 19.838 85.633 20.346 1.00 1.00 C ATOM 718 CD2 LEU 94 22.282 85.935 20.452 1.00 1.00 C ATOM 719 N LYS 95 19.657 83.027 17.463 1.00 1.00 N ATOM 720 CA LYS 95 19.832 82.991 16.035 1.00 1.00 C ATOM 721 C LYS 95 21.000 83.865 15.678 1.00 1.00 C ATOM 722 O LYS 95 21.842 83.485 14.867 1.00 1.00 O ATOM 723 CB LYS 95 18.576 83.505 15.328 1.00 1.00 C ATOM 724 CG LYS 95 18.655 83.457 13.810 1.00 1.00 C ATOM 725 CD LYS 95 17.347 83.899 13.175 1.00 1.00 C ATOM 726 CE LYS 95 17.436 83.884 11.658 1.00 1.00 C ATOM 727 NZ LYS 95 16.179 84.367 11.023 1.00 1.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 75.91 48.7 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 76.98 50.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 73.09 45.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.47 27.8 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 96.18 28.6 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 92.00 28.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 105.92 27.3 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.76 34.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 64.81 41.2 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 85.42 33.3 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 66.96 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 58.28 55.6 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 58.98 62.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 65.05 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 21.71 100.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 27.31 60.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 27.31 60.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 29.26 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 17.47 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.74 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.74 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1935 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 7.77 29 100.0 29 CRMSCA BURIED . . . . . . . . 7.65 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.82 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 7.91 142 100.0 142 CRMSMC BURIED . . . . . . . . 7.57 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.51 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 9.20 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 9.71 103 100.0 103 CRMSSC BURIED . . . . . . . . 8.95 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.55 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 8.70 219 100.0 219 CRMSALL BURIED . . . . . . . . 8.13 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.171 0.721 0.361 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 6.201 0.725 0.363 29 100.0 29 ERRCA BURIED . . . . . . . . 6.093 0.711 0.355 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.199 0.713 0.357 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 6.280 0.718 0.359 142 100.0 142 ERRMC BURIED . . . . . . . . 5.987 0.700 0.353 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.814 0.758 0.379 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 7.554 0.751 0.376 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 8.135 0.777 0.389 103 100.0 103 ERRSC BURIED . . . . . . . . 6.986 0.707 0.355 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.855 0.731 0.366 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 7.049 0.743 0.371 219 100.0 219 ERRALL BURIED . . . . . . . . 6.347 0.700 0.352 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 11 34 40 40 DISTCA CA (P) 0.00 0.00 2.50 27.50 85.00 40 DISTCA CA (RMS) 0.00 0.00 2.99 3.90 6.63 DISTCA ALL (N) 2 7 17 67 232 303 303 DISTALL ALL (P) 0.66 2.31 5.61 22.11 76.57 303 DISTALL ALL (RMS) 0.66 1.28 2.11 3.72 6.81 DISTALL END of the results output