####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS278_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS278_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 96 - 115 4.73 16.78 LCS_AVERAGE: 40.74 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 105 - 111 1.71 21.35 LONGEST_CONTINUOUS_SEGMENT: 7 107 - 113 1.95 17.85 LONGEST_CONTINUOUS_SEGMENT: 7 124 - 130 1.98 15.43 LCS_AVERAGE: 12.69 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 98 - 102 0.53 19.99 LONGEST_CONTINUOUS_SEGMENT: 5 105 - 109 0.85 21.98 LONGEST_CONTINUOUS_SEGMENT: 5 114 - 118 0.89 19.19 LCS_AVERAGE: 8.84 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 4 20 3 4 5 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT A 97 A 97 3 4 20 3 4 5 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT R 98 R 98 5 5 20 4 5 5 6 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT G 99 G 99 5 5 20 4 5 5 6 6 7 8 10 13 15 19 20 22 23 24 26 27 29 31 33 LCS_GDT W 100 W 100 5 5 20 4 5 5 6 7 7 9 10 11 13 15 17 18 20 20 20 23 29 31 32 LCS_GDT E 101 E 101 5 5 20 4 5 5 6 7 8 9 11 11 13 15 16 17 20 20 20 23 29 31 32 LCS_GDT C 102 C 102 5 5 20 3 5 5 5 7 8 9 11 11 13 15 17 18 20 20 24 27 29 31 33 LCS_GDT T 103 T 103 3 5 20 3 3 3 5 7 8 9 11 12 13 15 17 18 22 23 26 27 29 31 33 LCS_GDT K 104 K 104 3 5 20 3 3 3 4 5 7 9 11 12 13 15 17 18 20 20 21 24 27 29 33 LCS_GDT D 105 D 105 5 7 20 3 4 6 7 8 8 9 11 12 13 15 16 18 22 23 25 27 29 31 33 LCS_GDT R 106 R 106 5 7 20 3 4 6 7 8 8 9 11 12 13 15 17 18 22 23 26 27 29 31 33 LCS_GDT C 107 C 107 5 7 20 3 4 6 7 8 8 9 11 12 13 15 17 18 20 20 21 22 25 28 33 LCS_GDT G 108 G 108 5 7 20 3 4 6 7 8 8 9 11 12 13 15 17 18 20 20 21 22 25 28 33 LCS_GDT E 109 E 109 5 7 20 3 3 5 7 8 8 9 11 12 13 15 18 20 22 23 26 27 29 31 33 LCS_GDT V 110 V 110 3 7 20 4 4 5 6 7 9 10 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT R 111 R 111 3 7 20 3 3 5 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT N 112 N 112 4 7 20 3 4 6 7 8 8 9 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT E 113 E 113 4 7 20 3 4 5 6 7 7 9 11 14 17 18 20 22 23 24 25 26 28 31 33 LCS_GDT E 114 E 114 5 6 20 3 4 6 7 8 8 9 11 12 13 15 17 19 21 24 24 26 28 31 32 LCS_GDT N 115 N 115 5 6 20 3 4 5 5 5 7 8 9 11 13 15 17 19 21 24 24 26 28 31 33 LCS_GDT A 116 A 116 5 6 18 3 4 5 5 6 7 8 9 9 11 13 14 15 16 20 20 22 24 27 29 LCS_GDT C 117 C 117 5 6 18 3 4 5 5 5 7 8 9 11 12 14 17 19 19 21 24 25 25 27 30 LCS_GDT H 118 H 118 5 6 18 2 4 5 5 5 6 9 11 12 13 15 18 21 22 24 25 26 28 31 33 LCS_GDT C 119 C 119 4 6 18 3 4 4 5 7 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT S 120 S 120 4 6 18 3 4 4 5 5 8 10 12 14 16 18 20 22 23 24 25 27 29 31 33 LCS_GDT E 121 E 121 4 6 18 3 4 4 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT D 122 D 122 4 6 18 3 4 5 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT C 123 C 123 3 6 18 3 4 4 4 4 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT L 124 L 124 4 7 18 1 3 4 5 7 9 10 11 14 16 19 20 22 23 24 26 27 29 31 33 LCS_GDT S 125 S 125 4 7 18 3 3 4 5 7 9 10 11 12 14 15 20 21 23 24 26 27 29 31 32 LCS_GDT R 126 R 126 4 7 18 4 4 4 5 7 9 10 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT G 127 G 127 4 7 18 4 4 4 5 7 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT D 128 D 128 3 7 18 3 4 4 5 7 9 10 11 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT C 129 C 129 3 7 18 3 3 4 5 6 8 10 11 11 12 15 20 22 23 24 26 27 29 31 33 LCS_GDT C 130 C 130 3 7 18 3 3 4 5 7 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT T 131 T 131 4 5 16 3 4 5 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT N 132 N 132 4 5 16 3 4 5 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 LCS_GDT Y 133 Y 133 4 4 16 3 4 4 4 5 7 10 11 11 15 19 20 22 23 24 26 27 29 31 33 LCS_GDT Q 134 Q 134 4 4 16 3 4 4 4 7 9 10 11 11 14 18 20 21 23 24 26 27 29 31 33 LCS_GDT V 135 V 135 3 4 16 3 3 3 5 5 5 5 6 10 12 12 15 17 21 23 26 27 29 31 32 LCS_GDT V 136 V 136 3 4 16 3 3 3 4 4 5 5 7 8 11 13 14 15 16 20 23 25 28 31 32 LCS_GDT C 137 C 137 3 4 16 3 3 3 4 4 5 7 8 10 12 13 14 15 16 20 23 24 28 31 32 LCS_GDT K 138 K 138 3 4 16 3 3 3 4 5 5 8 8 9 11 13 14 15 16 18 19 23 28 29 32 LCS_GDT G 139 G 139 3 4 16 3 3 3 4 5 5 8 8 9 11 13 14 15 16 18 19 23 28 29 32 LCS_GDT E 140 E 140 3 4 11 3 3 3 3 4 4 8 8 9 11 13 14 15 16 20 23 24 28 31 32 LCS_AVERAGE LCS_A: 20.76 ( 8.84 12.69 40.74 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 7 8 9 11 14 16 17 19 20 22 23 24 26 27 29 31 33 GDT PERCENT_AT 8.89 11.11 13.33 15.56 17.78 20.00 24.44 31.11 35.56 37.78 42.22 44.44 48.89 51.11 53.33 57.78 60.00 64.44 68.89 73.33 GDT RMS_LOCAL 0.19 0.53 0.74 1.19 1.46 1.78 2.22 2.90 3.19 3.45 3.87 3.99 4.28 4.49 4.69 5.74 5.85 6.27 6.61 7.34 GDT RMS_ALL_AT 19.74 19.99 19.33 19.20 19.09 11.55 11.58 11.35 11.35 11.53 10.90 10.98 11.12 11.15 10.93 10.17 10.16 10.05 9.97 10.53 # Checking swapping # possible swapping detected: E 114 E 114 # possible swapping detected: D 122 D 122 # possible swapping detected: D 128 D 128 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 1.676 0 0.666 0.687 4.292 73.333 62.517 LGA A 97 A 97 1.202 0 0.669 0.599 3.681 71.905 70.476 LGA R 98 R 98 2.462 0 0.423 1.377 6.956 53.452 40.649 LGA G 99 G 99 7.213 0 0.326 0.326 11.092 9.167 9.167 LGA W 100 W 100 14.019 0 0.328 1.022 18.056 0.000 0.000 LGA E 101 E 101 16.793 0 0.537 1.337 18.742 0.000 0.000 LGA C 102 C 102 15.316 0 0.601 0.567 15.792 0.000 0.000 LGA T 103 T 103 15.383 0 0.603 1.219 16.769 0.000 0.000 LGA K 104 K 104 20.777 0 0.592 0.951 28.741 0.000 0.000 LGA D 105 D 105 17.088 0 0.650 1.249 18.266 0.000 0.000 LGA R 106 R 106 13.721 0 0.343 1.218 15.254 0.000 1.948 LGA C 107 C 107 19.185 0 0.581 1.025 24.275 0.000 0.000 LGA G 108 G 108 17.692 0 0.240 0.240 18.211 0.000 0.000 LGA E 109 E 109 10.935 0 0.109 1.190 13.290 1.429 0.688 LGA V 110 V 110 4.207 0 0.465 1.445 6.738 41.190 49.116 LGA R 111 R 111 1.198 0 0.136 1.011 9.573 58.333 37.229 LGA N 112 N 112 4.951 0 0.556 1.111 7.901 34.762 23.095 LGA E 113 E 113 6.735 0 0.051 1.051 9.279 12.381 8.042 LGA E 114 E 114 10.128 0 0.546 1.060 13.277 1.190 0.529 LGA N 115 N 115 9.554 0 0.477 1.310 11.470 0.238 0.476 LGA A 116 A 116 12.469 0 0.108 0.104 13.655 0.000 0.000 LGA C 117 C 117 11.359 0 0.621 0.895 12.718 0.000 0.000 LGA H 118 H 118 8.353 0 0.688 1.219 14.729 7.738 3.238 LGA C 119 C 119 3.687 0 0.571 0.742 4.998 37.262 40.873 LGA S 120 S 120 5.500 0 0.197 0.246 7.873 31.786 24.048 LGA E 121 E 121 3.082 0 0.197 1.118 4.696 56.190 52.275 LGA D 122 D 122 2.780 0 0.645 1.195 3.801 53.690 51.071 LGA C 123 C 123 3.039 0 0.612 0.817 6.853 45.833 36.349 LGA L 124 L 124 5.390 0 0.542 0.533 7.705 28.690 19.940 LGA S 125 S 125 7.777 0 0.285 0.359 9.321 13.929 10.000 LGA R 126 R 126 4.168 0 0.370 1.477 6.460 47.143 33.074 LGA G 127 G 127 2.961 0 0.472 0.472 4.085 48.690 48.690 LGA D 128 D 128 5.327 0 0.683 0.970 10.822 25.000 14.226 LGA C 129 C 129 6.944 0 0.042 0.803 9.518 27.024 18.889 LGA C 130 C 130 3.594 0 0.568 0.830 7.525 46.071 37.143 LGA T 131 T 131 2.258 0 0.633 0.508 3.942 62.976 64.354 LGA N 132 N 132 2.097 0 0.158 0.835 6.098 54.048 42.917 LGA Y 133 Y 133 7.309 0 0.269 1.120 19.692 11.548 3.968 LGA Q 134 Q 134 8.990 0 0.329 0.771 15.329 2.500 1.111 LGA V 135 V 135 12.026 0 0.605 1.373 13.894 0.000 0.000 LGA V 136 V 136 13.144 0 0.608 1.370 16.172 0.000 0.000 LGA C 137 C 137 15.805 0 0.564 0.605 19.918 0.000 0.000 LGA K 138 K 138 20.838 0 0.285 0.981 23.350 0.000 0.000 LGA G 139 G 139 22.671 0 0.321 0.321 22.671 0.000 0.000 LGA E 140 E 140 22.388 0 0.358 0.784 27.628 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 9.506 9.386 10.219 21.278 17.913 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 14 2.90 28.889 24.849 0.466 LGA_LOCAL RMSD: 2.904 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.351 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 9.506 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.566695 * X + 0.811359 * Y + -0.143362 * Z + 27.459553 Y_new = -0.512528 * X + 0.483374 * Y + 0.709694 * Z + 43.472507 Z_new = 0.645114 * X + -0.328703 * Y + 0.689770 * Z + 50.105217 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.735249 -0.701173 -0.444705 [DEG: -42.1267 -40.1742 -25.4797 ] ZXZ: -2.942270 0.809626 2.042037 [DEG: -168.5797 46.3881 117.0001 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS278_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS278_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 14 2.90 24.849 9.51 REMARK ---------------------------------------------------------- MOLECULE T0543TS278_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 1ulk_A 2gso_A 3ism_A ATOM 728 N THR 96 17.533 83.875 18.742 1.00 0.00 N ATOM 729 CA THR 96 16.516 84.436 17.780 1.00 0.00 C ATOM 730 C THR 96 16.730 85.975 17.519 1.00 0.00 C ATOM 731 O THR 96 17.035 86.743 18.439 1.00 0.00 O ATOM 732 CB THR 96 15.037 84.126 18.215 1.00 0.00 C ATOM 733 OG1 THR 96 14.858 82.747 18.511 1.00 0.00 O ATOM 734 CG2 THR 96 13.977 84.402 17.134 1.00 0.00 C ATOM 735 N ALA 97 16.512 86.437 16.271 1.00 0.00 N ATOM 736 CA ALA 97 16.612 87.882 15.895 1.00 0.00 C ATOM 737 C ALA 97 15.571 88.908 16.470 1.00 0.00 C ATOM 738 O ALA 97 15.814 90.118 16.392 1.00 0.00 O ATOM 739 CB ALA 97 16.682 87.934 14.357 1.00 0.00 C ATOM 740 N ARG 98 14.443 88.471 17.050 1.00 0.00 N ATOM 741 CA ARG 98 13.477 89.369 17.748 1.00 0.00 C ATOM 742 C ARG 98 13.754 89.304 19.289 1.00 0.00 C ATOM 743 O ARG 98 13.172 88.493 20.019 1.00 0.00 O ATOM 744 CB ARG 98 12.028 88.989 17.327 1.00 0.00 C ATOM 745 CG ARG 98 11.617 89.561 15.948 1.00 0.00 C ATOM 746 CD ARG 98 10.157 89.262 15.554 1.00 0.00 C ATOM 747 NE ARG 98 9.926 89.856 14.205 1.00 0.00 N ATOM 748 CZ ARG 98 9.862 89.168 13.069 1.00 0.00 C ATOM 749 NH1 ARG 98 9.528 87.913 12.984 1.00 0.00 H ATOM 750 NH2 ARG 98 10.145 89.796 11.982 1.00 0.00 H ATOM 751 N GLY 99 14.674 90.151 19.779 1.00 0.00 N ATOM 752 CA GLY 99 15.058 90.180 21.214 1.00 0.00 C ATOM 753 C GLY 99 16.326 91.007 21.513 1.00 0.00 C ATOM 754 O GLY 99 16.234 92.182 21.877 1.00 0.00 O ATOM 755 N TRP 100 17.496 90.369 21.431 1.00 0.00 N ATOM 756 CA TRP 100 18.821 91.020 21.699 1.00 0.00 C ATOM 757 C TRP 100 20.001 90.316 20.931 1.00 0.00 C ATOM 758 O TRP 100 20.743 90.960 20.187 1.00 0.00 O ATOM 759 CB TRP 100 19.070 91.099 23.243 1.00 0.00 C ATOM 760 CG TRP 100 19.608 92.438 23.750 1.00 0.00 C ATOM 761 CD1 TRP 100 18.854 93.395 24.459 1.00 0.00 C ATOM 762 CD2 TRP 100 20.904 92.927 23.731 1.00 0.00 C ATOM 763 NE1 TRP 100 19.643 94.486 24.874 1.00 0.00 N ATOM 764 CE2 TRP 100 20.911 94.163 24.426 1.00 0.00 C ATOM 765 CE3 TRP 100 22.111 92.387 23.212 1.00 0.00 C ATOM 766 CZ2 TRP 100 22.120 94.865 24.613 1.00 0.00 C ATOM 767 CZ3 TRP 100 23.291 93.112 23.390 1.00 0.00 C ATOM 768 CH2 TRP 100 23.293 94.334 24.076 1.00 0.00 H ATOM 769 N GLU 101 20.122 88.988 21.111 1.00 0.00 N ATOM 770 CA GLU 101 21.175 88.091 20.557 1.00 0.00 C ATOM 771 C GLU 101 21.514 88.256 19.035 1.00 0.00 C ATOM 772 O GLU 101 22.599 88.739 18.699 1.00 0.00 O ATOM 773 CB GLU 101 20.754 86.634 20.948 1.00 0.00 C ATOM 774 CG GLU 101 20.473 86.302 22.446 1.00 0.00 C ATOM 775 CD GLU 101 19.133 86.751 23.016 1.00 0.00 C ATOM 776 OE1 GLU 101 19.093 87.765 23.735 1.00 0.00 O ATOM 777 OE2 GLU 101 18.117 86.064 22.813 1.00 0.00 O ATOM 778 N CYS 102 20.599 87.879 18.120 1.00 0.00 N ATOM 779 CA CYS 102 20.766 88.150 16.659 1.00 0.00 C ATOM 780 C CYS 102 20.062 89.492 16.179 1.00 0.00 C ATOM 781 O CYS 102 19.719 89.651 15.005 1.00 0.00 O ATOM 782 CB CYS 102 20.286 86.880 15.905 1.00 0.00 C ATOM 783 SG CYS 102 20.551 85.325 16.791 1.00 0.00 S ATOM 784 N THR 103 19.855 90.462 17.092 1.00 0.00 N ATOM 785 CA THR 103 19.145 91.752 16.841 1.00 0.00 C ATOM 786 C THR 103 20.120 92.957 16.630 1.00 0.00 C ATOM 787 O THR 103 19.963 93.697 15.657 1.00 0.00 O ATOM 788 CB THR 103 18.155 92.012 18.029 1.00 0.00 C ATOM 789 OG1 THR 103 17.348 90.875 18.315 1.00 0.00 O ATOM 790 CG2 THR 103 17.158 93.152 17.807 1.00 0.00 C ATOM 791 N LYS 104 21.089 93.178 17.541 1.00 0.00 N ATOM 792 CA LYS 104 22.078 94.295 17.486 1.00 0.00 C ATOM 793 C LYS 104 22.877 94.419 16.138 1.00 0.00 C ATOM 794 O LYS 104 23.661 93.532 15.785 1.00 0.00 O ATOM 795 CB LYS 104 22.958 94.080 18.755 1.00 0.00 C ATOM 796 CG LYS 104 24.178 95.018 18.987 1.00 0.00 C ATOM 797 CD LYS 104 25.494 94.678 18.246 1.00 0.00 C ATOM 798 CE LYS 104 26.053 93.283 18.569 1.00 0.00 C ATOM 799 NZ LYS 104 27.268 93.017 17.761 1.00 0.00 N ATOM 800 N ASP 105 22.665 95.538 15.411 1.00 0.00 N ATOM 801 CA ASP 105 23.328 95.831 14.101 1.00 0.00 C ATOM 802 C ASP 105 23.068 94.779 12.948 1.00 0.00 C ATOM 803 O ASP 105 22.407 93.752 13.140 1.00 0.00 O ATOM 804 CB ASP 105 24.820 96.234 14.345 1.00 0.00 C ATOM 805 CG ASP 105 25.045 97.639 14.904 1.00 0.00 C ATOM 806 OD1 ASP 105 25.691 97.778 15.958 1.00 0.00 O ATOM 807 OD2 ASP 105 24.637 98.622 14.257 1.00 0.00 O ATOM 808 N ARG 106 23.516 95.058 11.707 1.00 0.00 N ATOM 809 CA ARG 106 23.359 94.108 10.561 1.00 0.00 C ATOM 810 C ARG 106 24.598 94.077 9.596 1.00 0.00 C ATOM 811 O ARG 106 24.510 94.407 8.410 1.00 0.00 O ATOM 812 CB ARG 106 21.970 94.318 9.866 1.00 0.00 C ATOM 813 CG ARG 106 21.305 93.004 9.373 1.00 0.00 C ATOM 814 CD ARG 106 20.658 92.191 10.521 1.00 0.00 C ATOM 815 NE ARG 106 20.475 90.766 10.114 1.00 0.00 N ATOM 816 CZ ARG 106 20.736 89.706 10.877 1.00 0.00 C ATOM 817 NH1 ARG 106 20.920 89.774 12.161 1.00 0.00 H ATOM 818 NH2 ARG 106 20.811 88.541 10.312 1.00 0.00 H ATOM 819 N CYS 107 25.756 93.628 10.115 1.00 0.00 N ATOM 820 CA CYS 107 27.011 93.462 9.328 1.00 0.00 C ATOM 821 C CYS 107 27.271 91.977 8.894 1.00 0.00 C ATOM 822 O CYS 107 27.301 91.696 7.692 1.00 0.00 O ATOM 823 CB CYS 107 28.158 94.102 10.150 1.00 0.00 C ATOM 824 SG CYS 107 29.766 93.686 9.430 1.00 0.00 S ATOM 825 N GLY 108 27.414 91.028 9.837 1.00 0.00 N ATOM 826 CA GLY 108 27.765 89.616 9.516 1.00 0.00 C ATOM 827 C GLY 108 26.856 88.670 8.687 1.00 0.00 C ATOM 828 O GLY 108 27.405 87.938 7.861 1.00 0.00 O ATOM 829 N GLU 109 25.523 88.613 8.894 1.00 0.00 N ATOM 830 CA GLU 109 24.646 87.605 8.197 1.00 0.00 C ATOM 831 C GLU 109 23.377 88.136 7.436 1.00 0.00 C ATOM 832 O GLU 109 22.753 89.142 7.795 1.00 0.00 O ATOM 833 CB GLU 109 24.258 86.531 9.255 1.00 0.00 C ATOM 834 CG GLU 109 23.626 85.220 8.692 1.00 0.00 C ATOM 835 CD GLU 109 23.642 84.087 9.678 1.00 0.00 C ATOM 836 OE1 GLU 109 22.737 84.022 10.535 1.00 0.00 O ATOM 837 OE2 GLU 109 24.656 83.369 9.729 1.00 0.00 O ATOM 838 N VAL 110 22.994 87.384 6.388 1.00 0.00 N ATOM 839 CA VAL 110 21.762 87.614 5.575 1.00 0.00 C ATOM 840 C VAL 110 20.655 86.559 5.958 1.00 0.00 C ATOM 841 O VAL 110 19.850 86.843 6.849 1.00 0.00 O ATOM 842 CB VAL 110 22.076 87.812 4.041 1.00 0.00 C ATOM 843 CG1 VAL 110 22.838 89.128 3.755 1.00 0.00 C ATOM 844 CG2 VAL 110 22.843 86.678 3.314 1.00 0.00 C ATOM 845 N ARG 111 20.629 85.346 5.370 1.00 0.00 N ATOM 846 CA ARG 111 19.554 84.333 5.607 1.00 0.00 C ATOM 847 C ARG 111 19.792 83.339 6.804 1.00 0.00 C ATOM 848 O ARG 111 20.700 82.503 6.782 1.00 0.00 O ATOM 849 CB ARG 111 19.311 83.541 4.276 1.00 0.00 C ATOM 850 CG ARG 111 18.238 84.126 3.323 1.00 0.00 C ATOM 851 CD ARG 111 18.697 85.315 2.454 1.00 0.00 C ATOM 852 NE ARG 111 17.511 86.161 2.158 1.00 0.00 N ATOM 853 CZ ARG 111 16.864 86.243 1.001 1.00 0.00 C ATOM 854 NH1 ARG 111 17.276 85.721 -0.115 1.00 0.00 H ATOM 855 NH2 ARG 111 15.740 86.881 0.976 1.00 0.00 H ATOM 856 N ASN 112 18.919 83.418 7.821 1.00 0.00 N ATOM 857 CA ASN 112 18.861 82.462 8.971 1.00 0.00 C ATOM 858 C ASN 112 17.411 82.471 9.563 1.00 0.00 C ATOM 859 O ASN 112 16.704 81.468 9.441 1.00 0.00 O ATOM 860 CB ASN 112 19.993 82.696 10.004 1.00 0.00 C ATOM 861 CG ASN 112 20.019 81.682 11.149 1.00 0.00 C ATOM 862 OD1 ASN 112 20.242 80.491 10.960 1.00 0.00 O ATOM 863 ND2 ASN 112 19.783 82.091 12.367 1.00 0.00 N ATOM 864 N GLU 113 16.962 83.582 10.180 1.00 0.00 N ATOM 865 CA GLU 113 15.565 83.713 10.697 1.00 0.00 C ATOM 866 C GLU 113 14.413 83.870 9.624 1.00 0.00 C ATOM 867 O GLU 113 13.245 83.673 9.975 1.00 0.00 O ATOM 868 CB GLU 113 15.552 84.834 11.780 1.00 0.00 C ATOM 869 CG GLU 113 16.036 84.425 13.207 1.00 0.00 C ATOM 870 CD GLU 113 17.519 84.429 13.552 1.00 0.00 C ATOM 871 OE1 GLU 113 17.820 84.176 14.732 1.00 0.00 O ATOM 872 OE2 GLU 113 18.398 84.655 12.689 1.00 0.00 O ATOM 873 N GLU 114 14.701 84.186 8.341 1.00 0.00 N ATOM 874 CA GLU 114 13.684 84.224 7.244 1.00 0.00 C ATOM 875 C GLU 114 13.159 82.773 6.926 1.00 0.00 C ATOM 876 O GLU 114 13.861 81.952 6.325 1.00 0.00 O ATOM 877 CB GLU 114 14.333 84.869 5.985 1.00 0.00 C ATOM 878 CG GLU 114 14.466 86.415 5.970 1.00 0.00 C ATOM 879 CD GLU 114 15.255 86.939 4.788 1.00 0.00 C ATOM 880 OE1 GLU 114 16.499 86.855 4.820 1.00 0.00 O ATOM 881 OE2 GLU 114 14.675 87.458 3.816 1.00 0.00 O ATOM 882 N ASN 115 11.915 82.458 7.325 1.00 0.00 N ATOM 883 CA ASN 115 11.355 81.073 7.247 1.00 0.00 C ATOM 884 C ASN 115 10.860 80.505 5.857 1.00 0.00 C ATOM 885 O ASN 115 9.727 80.037 5.723 1.00 0.00 O ATOM 886 CB ASN 115 10.382 80.917 8.459 1.00 0.00 C ATOM 887 CG ASN 115 9.018 81.618 8.388 1.00 0.00 C ATOM 888 OD1 ASN 115 8.792 82.561 7.641 1.00 0.00 O ATOM 889 ND2 ASN 115 8.059 81.199 9.172 1.00 0.00 N ATOM 890 N ALA 116 11.766 80.464 4.859 1.00 0.00 N ATOM 891 CA ALA 116 11.547 79.883 3.495 1.00 0.00 C ATOM 892 C ALA 116 10.410 80.438 2.561 1.00 0.00 C ATOM 893 O ALA 116 10.704 80.980 1.492 1.00 0.00 O ATOM 894 CB ALA 116 11.586 78.338 3.583 1.00 0.00 C ATOM 895 N CYS 117 9.128 80.236 2.896 1.00 0.00 N ATOM 896 CA CYS 117 7.979 80.721 2.072 1.00 0.00 C ATOM 897 C CYS 117 7.526 82.204 2.303 1.00 0.00 C ATOM 898 O CYS 117 7.189 82.891 1.338 1.00 0.00 O ATOM 899 CB CYS 117 6.833 79.710 2.287 1.00 0.00 C ATOM 900 SG CYS 117 5.410 80.098 1.211 1.00 0.00 S ATOM 901 N HIS 118 7.526 82.704 3.550 1.00 0.00 N ATOM 902 CA HIS 118 7.073 84.095 3.881 1.00 0.00 C ATOM 903 C HIS 118 7.989 85.276 3.393 1.00 0.00 C ATOM 904 O HIS 118 7.486 86.383 3.181 1.00 0.00 O ATOM 905 CB HIS 118 6.733 84.164 5.401 1.00 0.00 C ATOM 906 CG HIS 118 5.602 83.232 5.867 1.00 0.00 C ATOM 907 ND1 HIS 118 4.263 83.527 5.677 1.00 0.00 N ATOM 908 CD2 HIS 118 5.758 81.888 6.261 1.00 0.00 C ATOM 909 CE1 HIS 118 3.716 82.290 5.932 1.00 0.00 C ATOM 910 NE2 HIS 118 4.527 81.258 6.310 1.00 0.00 N ATOM 911 N CYS 119 9.309 85.070 3.214 1.00 0.00 N ATOM 912 CA CYS 119 10.223 86.085 2.631 1.00 0.00 C ATOM 913 C CYS 119 10.155 86.066 1.059 1.00 0.00 C ATOM 914 O CYS 119 9.209 86.618 0.484 1.00 0.00 O ATOM 915 CB CYS 119 11.601 85.872 3.305 1.00 0.00 C ATOM 916 SG CYS 119 12.292 84.216 2.939 1.00 0.00 S ATOM 917 N SER 120 11.112 85.426 0.369 1.00 0.00 N ATOM 918 CA SER 120 11.150 85.337 -1.115 1.00 0.00 C ATOM 919 C SER 120 12.120 84.205 -1.590 1.00 0.00 C ATOM 920 O SER 120 13.334 84.328 -1.418 1.00 0.00 O ATOM 921 CB SER 120 11.524 86.710 -1.742 1.00 0.00 C ATOM 922 OG SER 120 12.833 87.153 -1.359 1.00 0.00 O ATOM 923 N GLU 121 11.579 83.111 -2.157 1.00 0.00 N ATOM 924 CA GLU 121 12.347 82.009 -2.825 1.00 0.00 C ATOM 925 C GLU 121 13.569 81.222 -2.182 1.00 0.00 C ATOM 926 O GLU 121 13.586 79.985 -2.252 1.00 0.00 O ATOM 927 CB GLU 121 12.513 82.286 -4.363 1.00 0.00 C ATOM 928 CG GLU 121 12.809 83.713 -4.923 1.00 0.00 C ATOM 929 CD GLU 121 11.653 84.547 -5.467 1.00 0.00 C ATOM 930 OE1 GLU 121 11.811 85.171 -6.537 1.00 0.00 O ATOM 931 OE2 GLU 121 10.572 84.615 -4.847 1.00 0.00 O ATOM 932 N ASP 122 14.590 81.886 -1.621 1.00 0.00 N ATOM 933 CA ASP 122 15.818 81.246 -1.047 1.00 0.00 C ATOM 934 C ASP 122 15.593 80.171 0.095 1.00 0.00 C ATOM 935 O ASP 122 14.536 80.060 0.728 1.00 0.00 O ATOM 936 CB ASP 122 16.744 82.433 -0.637 1.00 0.00 C ATOM 937 CG ASP 122 18.252 82.210 -0.486 1.00 0.00 C ATOM 938 OD1 ASP 122 18.994 83.217 -0.421 1.00 0.00 O ATOM 939 OD2 ASP 122 18.711 81.064 -0.309 1.00 0.00 O ATOM 940 N CYS 123 16.608 79.323 0.320 1.00 0.00 N ATOM 941 CA CYS 123 16.564 78.235 1.329 1.00 0.00 C ATOM 942 C CYS 123 17.174 78.596 2.730 1.00 0.00 C ATOM 943 O CYS 123 18.201 79.276 2.846 1.00 0.00 O ATOM 944 CB CYS 123 17.283 77.041 0.653 1.00 0.00 C ATOM 945 SG CYS 123 17.112 75.519 1.651 1.00 0.00 S ATOM 946 N LEU 124 16.548 78.065 3.795 1.00 0.00 N ATOM 947 CA LEU 124 17.004 78.228 5.211 1.00 0.00 C ATOM 948 C LEU 124 18.439 77.674 5.551 1.00 0.00 C ATOM 949 O LEU 124 19.050 76.917 4.789 1.00 0.00 O ATOM 950 CB LEU 124 15.921 77.508 6.092 1.00 0.00 C ATOM 951 CG LEU 124 14.726 78.374 6.564 1.00 0.00 C ATOM 952 CD1 LEU 124 13.592 77.482 7.098 1.00 0.00 C ATOM 953 CD2 LEU 124 15.157 79.342 7.679 1.00 0.00 C ATOM 954 N SER 125 18.959 78.040 6.740 1.00 0.00 N ATOM 955 CA SER 125 20.258 77.518 7.263 1.00 0.00 C ATOM 956 C SER 125 20.239 75.966 7.517 1.00 0.00 C ATOM 957 O SER 125 20.895 75.227 6.777 1.00 0.00 O ATOM 958 CB SER 125 20.677 78.393 8.473 1.00 0.00 C ATOM 959 OG SER 125 19.751 78.305 9.562 1.00 0.00 O ATOM 960 N ARG 126 19.494 75.472 8.524 1.00 0.00 N ATOM 961 CA ARG 126 19.272 74.011 8.750 1.00 0.00 C ATOM 962 C ARG 126 17.809 73.636 8.304 1.00 0.00 C ATOM 963 O ARG 126 17.656 73.131 7.188 1.00 0.00 O ATOM 964 CB ARG 126 19.709 73.589 10.186 1.00 0.00 C ATOM 965 CG ARG 126 21.173 73.087 10.365 1.00 0.00 C ATOM 966 CD ARG 126 22.284 74.161 10.398 1.00 0.00 C ATOM 967 NE ARG 126 22.999 74.316 9.090 1.00 0.00 N ATOM 968 CZ ARG 126 23.725 75.363 8.755 1.00 0.00 C ATOM 969 NH1 ARG 126 24.071 76.299 9.585 1.00 0.00 H ATOM 970 NH2 ARG 126 24.120 75.451 7.531 1.00 0.00 H ATOM 971 N GLY 127 16.747 73.857 9.115 1.00 0.00 N ATOM 972 CA GLY 127 15.332 73.606 8.680 1.00 0.00 C ATOM 973 C GLY 127 14.412 72.710 9.556 1.00 0.00 C ATOM 974 O GLY 127 14.853 71.734 10.169 1.00 0.00 O ATOM 975 N ASP 128 13.113 73.066 9.575 1.00 0.00 N ATOM 976 CA ASP 128 12.012 72.306 10.252 1.00 0.00 C ATOM 977 C ASP 128 10.630 72.879 9.711 1.00 0.00 C ATOM 978 O ASP 128 10.464 73.116 8.506 1.00 0.00 O ATOM 979 CB ASP 128 12.215 72.304 11.802 1.00 0.00 C ATOM 980 CG ASP 128 11.420 71.254 12.582 1.00 0.00 C ATOM 981 OD1 ASP 128 11.945 70.146 12.804 1.00 0.00 O ATOM 982 OD2 ASP 128 10.343 71.613 13.104 1.00 0.00 O ATOM 983 N CYS 129 9.637 73.113 10.587 1.00 0.00 N ATOM 984 CA CYS 129 8.340 73.754 10.238 1.00 0.00 C ATOM 985 C CYS 129 8.401 75.315 10.284 1.00 0.00 C ATOM 986 O CYS 129 9.053 75.895 11.159 1.00 0.00 O ATOM 987 CB CYS 129 7.318 73.159 11.229 1.00 0.00 C ATOM 988 SG CYS 129 5.704 73.960 11.080 1.00 0.00 S ATOM 989 N CYS 130 7.687 75.999 9.369 1.00 0.00 N ATOM 990 CA CYS 130 7.685 77.483 9.287 1.00 0.00 C ATOM 991 C CYS 130 6.460 78.215 9.952 1.00 0.00 C ATOM 992 O CYS 130 6.671 78.945 10.922 1.00 0.00 O ATOM 993 CB CYS 130 8.007 77.841 7.816 1.00 0.00 C ATOM 994 SG CYS 130 6.562 77.912 6.751 1.00 0.00 S ATOM 995 N THR 131 5.204 78.019 9.502 1.00 0.00 N ATOM 996 CA THR 131 3.980 78.737 10.019 1.00 0.00 C ATOM 997 C THR 131 3.928 80.290 9.767 1.00 0.00 C ATOM 998 O THR 131 4.941 80.996 9.703 1.00 0.00 O ATOM 999 CB THR 131 3.478 78.339 11.452 1.00 0.00 C ATOM 1000 OG1 THR 131 4.514 78.440 12.421 1.00 0.00 O ATOM 1001 CG2 THR 131 2.833 76.945 11.529 1.00 0.00 C ATOM 1002 N ASN 132 2.699 80.828 9.660 1.00 0.00 N ATOM 1003 CA ASN 132 2.428 82.275 9.394 1.00 0.00 C ATOM 1004 C ASN 132 3.069 83.417 10.275 1.00 0.00 C ATOM 1005 O ASN 132 3.149 84.552 9.798 1.00 0.00 O ATOM 1006 CB ASN 132 0.905 82.422 9.134 1.00 0.00 C ATOM 1007 CG ASN 132 -0.034 82.152 10.311 1.00 0.00 C ATOM 1008 OD1 ASN 132 -0.182 82.964 11.217 1.00 0.00 O ATOM 1009 ND2 ASN 132 -0.699 81.026 10.327 1.00 0.00 N ATOM 1010 N TYR 133 3.574 83.148 11.491 1.00 0.00 N ATOM 1011 CA TYR 133 4.284 84.161 12.347 1.00 0.00 C ATOM 1012 C TYR 133 5.633 84.797 11.831 1.00 0.00 C ATOM 1013 O TYR 133 6.129 85.743 12.450 1.00 0.00 O ATOM 1014 CB TYR 133 4.625 83.462 13.702 1.00 0.00 C ATOM 1015 CG TYR 133 3.474 83.131 14.657 1.00 0.00 C ATOM 1016 CD1 TYR 133 2.849 84.153 15.379 1.00 0.00 C ATOM 1017 CD2 TYR 133 3.107 81.803 14.886 1.00 0.00 C ATOM 1018 CE1 TYR 133 1.863 83.848 16.313 1.00 0.00 C ATOM 1019 CE2 TYR 133 2.120 81.503 15.820 1.00 0.00 C ATOM 1020 CZ TYR 133 1.496 82.526 16.530 1.00 0.00 C ATOM 1021 OH TYR 133 0.510 82.248 17.436 1.00 0.00 H ATOM 1022 N GLN 134 6.249 84.281 10.750 1.00 0.00 N ATOM 1023 CA GLN 134 7.632 84.668 10.304 1.00 0.00 C ATOM 1024 C GLN 134 8.803 84.212 11.283 1.00 0.00 C ATOM 1025 O GLN 134 9.844 84.862 11.409 1.00 0.00 O ATOM 1026 CB GLN 134 7.680 86.145 9.812 1.00 0.00 C ATOM 1027 CG GLN 134 8.815 86.451 8.797 1.00 0.00 C ATOM 1028 CD GLN 134 9.193 87.925 8.723 1.00 0.00 C ATOM 1029 OE1 GLN 134 9.946 88.430 9.548 1.00 0.00 O ATOM 1030 NE2 GLN 134 8.694 88.673 7.778 1.00 0.00 N ATOM 1031 N VAL 135 8.605 83.059 11.944 1.00 0.00 N ATOM 1032 CA VAL 135 9.534 82.390 12.903 1.00 0.00 C ATOM 1033 C VAL 135 9.100 80.875 12.956 1.00 0.00 C ATOM 1034 O VAL 135 7.904 80.561 12.942 1.00 0.00 O ATOM 1035 CB VAL 135 9.588 83.000 14.356 1.00 0.00 C ATOM 1036 CG1 VAL 135 10.428 84.289 14.464 1.00 0.00 C ATOM 1037 CG2 VAL 135 8.221 83.251 15.035 1.00 0.00 C ATOM 1038 N VAL 136 10.049 79.925 13.052 1.00 0.00 N ATOM 1039 CA VAL 136 9.751 78.446 13.063 1.00 0.00 C ATOM 1040 C VAL 136 8.652 77.951 14.086 1.00 0.00 C ATOM 1041 O VAL 136 8.633 78.392 15.238 1.00 0.00 O ATOM 1042 CB VAL 136 11.070 77.597 13.163 1.00 0.00 C ATOM 1043 CG1 VAL 136 11.963 77.687 11.907 1.00 0.00 C ATOM 1044 CG2 VAL 136 11.945 77.858 14.413 1.00 0.00 C ATOM 1045 N CYS 137 7.772 77.009 13.683 1.00 0.00 N ATOM 1046 CA CYS 137 6.598 76.572 14.500 1.00 0.00 C ATOM 1047 C CYS 137 6.898 75.853 15.860 1.00 0.00 C ATOM 1048 O CYS 137 7.212 74.662 15.865 1.00 0.00 O ATOM 1049 CB CYS 137 5.674 75.647 13.655 1.00 0.00 C ATOM 1050 SG CYS 137 5.822 75.796 11.877 1.00 0.00 S ATOM 1051 N LYS 138 6.845 76.541 17.010 1.00 0.00 N ATOM 1052 CA LYS 138 7.009 75.911 18.358 1.00 0.00 C ATOM 1053 C LYS 138 6.609 76.895 19.513 1.00 0.00 C ATOM 1054 O LYS 138 7.455 77.423 20.241 1.00 0.00 O ATOM 1055 CB LYS 138 8.314 75.080 18.636 1.00 0.00 C ATOM 1056 CG LYS 138 9.720 75.575 18.200 1.00 0.00 C ATOM 1057 CD LYS 138 10.136 75.366 16.718 1.00 0.00 C ATOM 1058 CE LYS 138 10.068 73.919 16.169 1.00 0.00 C ATOM 1059 NZ LYS 138 10.388 73.914 14.714 1.00 0.00 N ATOM 1060 N GLY 139 5.292 77.103 19.689 1.00 0.00 N ATOM 1061 CA GLY 139 4.726 77.927 20.797 1.00 0.00 C ATOM 1062 C GLY 139 3.397 77.365 21.355 1.00 0.00 C ATOM 1063 O GLY 139 2.349 78.007 21.253 1.00 0.00 O ATOM 1064 N GLU 140 3.464 76.165 21.951 1.00 0.00 N ATOM 1065 CA GLU 140 2.302 75.422 22.512 1.00 0.00 C ATOM 1066 C GLU 140 1.150 75.018 21.516 1.00 0.00 C ATOM 1067 O GLU 140 1.288 74.058 20.751 1.00 0.00 O ATOM 1068 CB GLU 140 1.826 76.001 23.880 1.00 0.00 C ATOM 1069 CG GLU 140 2.699 75.721 25.128 1.00 0.00 C ATOM 1070 CD GLU 140 1.896 75.624 26.406 1.00 0.00 C ATOM 1071 OE1 GLU 140 1.108 76.541 26.704 1.00 0.00 O ATOM 1072 OE2 GLU 140 2.019 74.609 27.117 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 99.54 23.9 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 105.39 22.6 62 100.0 62 ARMSMC BURIED . . . . . . . . 83.95 26.9 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.61 30.8 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 88.81 33.3 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 85.56 34.6 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 102.63 23.1 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.11 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 75.45 50.0 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 81.67 56.2 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 95.47 28.6 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 100.54 7.7 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 98.64 8.3 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 99.08 10.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 105.26 0.0 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.84 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 70.84 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 84.01 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 30.60 50.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.51 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.51 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.2112 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 9.72 32 100.0 32 CRMSCA BURIED . . . . . . . . 8.96 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.50 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 9.68 156 100.0 156 CRMSMC BURIED . . . . . . . . 9.08 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.19 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 11.19 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.57 112 100.0 112 CRMSSC BURIED . . . . . . . . 10.34 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.29 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 10.54 240 100.0 240 CRMSALL BURIED . . . . . . . . 9.71 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.824 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 9.023 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 8.334 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.801 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 8.958 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 8.426 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.383 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 10.390 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 10.733 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 9.642 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.500 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 9.719 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 8.999 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 6 31 45 45 DISTCA CA (P) 0.00 2.22 4.44 13.33 68.89 45 DISTCA CA (RMS) 0.00 1.45 2.16 3.41 7.30 DISTCA ALL (N) 1 3 16 45 206 345 345 DISTALL ALL (P) 0.29 0.87 4.64 13.04 59.71 345 DISTALL ALL (RMS) 0.99 1.45 2.35 3.57 7.17 DISTALL END of the results output