####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS275_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS275_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 56 - 66 4.99 59.63 LCS_AVERAGE: 24.81 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 65 - 71 1.72 43.71 LCS_AVERAGE: 13.19 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 59 - 63 0.93 57.55 LONGEST_CONTINUOUS_SEGMENT: 5 65 - 69 0.46 50.04 LONGEST_CONTINUOUS_SEGMENT: 5 72 - 76 0.89 35.96 LCS_AVERAGE: 9.75 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 5 11 3 3 4 4 4 5 6 6 7 7 9 9 10 10 10 10 11 11 11 11 LCS_GDT S 57 S 57 4 5 11 3 3 4 4 4 5 6 6 7 7 9 9 10 10 10 10 11 11 11 11 LCS_GDT C 58 C 58 4 5 11 3 3 4 4 4 5 6 6 7 8 9 9 10 10 10 10 11 11 11 11 LCS_GDT K 59 K 59 5 5 11 3 3 5 5 5 5 6 7 8 8 9 9 10 10 11 11 12 12 13 13 LCS_GDT G 60 G 60 5 5 11 3 4 5 5 5 5 6 7 8 8 9 9 10 10 11 11 12 12 13 13 LCS_GDT R 61 R 61 5 5 11 3 4 5 5 5 5 6 7 8 8 9 9 10 10 11 11 12 12 13 13 LCS_GDT C 62 C 62 5 5 11 3 4 5 5 5 5 6 7 8 8 9 9 10 10 11 11 12 12 13 13 LCS_GDT F 63 F 63 5 5 11 3 4 5 5 5 5 6 7 8 8 9 9 10 10 11 11 12 12 13 13 LCS_GDT E 64 E 64 4 6 11 3 4 4 5 5 6 7 7 8 8 9 9 10 10 11 11 12 12 13 13 LCS_GDT L 65 L 65 5 7 11 3 5 5 5 7 7 7 7 8 8 9 9 10 10 11 11 12 12 13 13 LCS_GDT Q 66 Q 66 5 7 11 4 5 5 5 7 7 7 7 8 8 9 9 9 10 11 11 12 12 13 13 LCS_GDT E 67 E 67 5 7 10 4 5 5 5 7 7 7 7 8 8 9 9 9 10 11 11 12 12 13 13 LCS_GDT V 68 V 68 5 7 10 4 5 5 5 7 7 7 7 8 8 9 9 9 10 11 11 12 12 13 13 LCS_GDT G 69 G 69 5 7 10 4 5 5 5 7 7 7 7 8 8 9 9 9 10 11 11 12 12 13 13 LCS_GDT P 70 P 70 4 7 10 3 3 5 5 7 7 7 7 8 8 9 9 9 10 10 11 12 12 13 13 LCS_GDT P 71 P 71 4 7 10 3 3 5 5 7 7 7 7 8 8 9 9 9 10 10 10 11 12 13 13 LCS_GDT D 72 D 72 5 6 10 3 4 5 6 6 6 7 7 8 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT C 73 C 73 5 6 10 3 4 5 6 6 6 7 7 7 8 8 8 8 9 9 10 10 10 11 11 LCS_GDT R 74 R 74 5 6 9 3 4 5 6 6 6 7 7 7 8 8 8 8 9 9 10 10 10 11 11 LCS_GDT C 75 C 75 5 6 9 3 4 5 6 6 6 7 7 7 8 8 8 8 9 9 10 10 10 11 11 LCS_GDT D 76 D 76 5 6 9 3 4 5 6 6 6 7 7 7 8 8 8 8 9 9 10 10 10 11 11 LCS_GDT N 77 N 77 3 6 9 3 4 4 6 6 6 7 7 7 8 8 8 8 9 9 10 10 10 11 11 LCS_GDT L 78 L 78 3 4 9 3 3 3 4 4 6 6 6 7 7 7 8 8 8 9 10 10 10 11 11 LCS_GDT C 79 C 79 3 4 9 3 3 3 4 4 4 6 6 6 7 7 8 8 8 9 10 10 10 11 11 LCS_GDT K 80 K 80 3 4 9 1 3 3 4 4 4 6 6 6 7 7 8 8 8 9 10 10 10 11 11 LCS_GDT S 81 S 81 3 4 9 1 3 3 4 4 5 7 7 7 8 8 8 8 8 8 10 10 10 11 11 LCS_GDT Y 82 Y 82 3 6 10 0 3 3 5 5 7 7 7 7 8 8 8 9 10 10 11 11 11 11 11 LCS_GDT S 83 S 83 3 6 10 0 3 4 5 5 7 7 7 7 8 8 8 9 10 10 11 11 11 11 11 LCS_GDT S 84 S 84 3 6 10 3 3 4 5 5 7 7 7 7 8 8 9 9 10 10 11 11 11 12 12 LCS_GDT C 85 C 85 3 6 10 3 3 4 5 5 7 7 7 7 8 8 9 9 10 10 11 11 11 12 12 LCS_GDT C 86 C 86 3 6 10 3 3 4 5 5 7 7 7 7 8 8 9 9 10 10 11 11 11 12 12 LCS_GDT H 87 H 87 3 6 10 3 3 4 4 5 7 7 7 7 8 8 9 9 10 10 11 11 11 12 12 LCS_GDT D 88 D 88 3 5 10 3 3 3 4 5 7 7 7 7 8 8 9 9 10 10 11 11 11 12 12 LCS_GDT F 89 F 89 3 4 10 3 3 3 4 4 4 5 6 6 7 8 9 9 10 10 11 11 11 12 12 LCS_GDT D 90 D 90 3 4 10 3 3 3 4 4 4 5 6 6 7 8 9 9 10 10 11 11 11 12 12 LCS_GDT E 91 E 91 3 3 10 3 3 3 3 3 4 4 6 6 7 8 9 9 10 10 11 11 11 12 12 LCS_GDT L 92 L 92 3 3 10 3 3 3 3 3 4 4 6 6 7 7 9 9 9 10 11 11 11 12 12 LCS_GDT C 93 C 93 3 3 8 3 3 3 3 3 4 4 5 5 7 7 8 9 9 10 10 10 10 12 12 LCS_GDT L 94 L 94 3 3 8 3 3 3 3 3 4 4 5 5 5 6 8 9 9 10 10 10 10 12 12 LCS_GDT K 95 K 95 3 3 8 0 3 3 3 3 4 4 5 5 5 6 7 9 9 10 10 10 10 12 12 LCS_AVERAGE LCS_A: 15.92 ( 9.75 13.19 24.81 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 7 7 7 8 8 9 9 10 10 11 11 12 12 13 13 GDT PERCENT_AT 10.00 12.50 12.50 15.00 17.50 17.50 17.50 17.50 20.00 20.00 22.50 22.50 25.00 25.00 27.50 27.50 30.00 30.00 32.50 32.50 GDT RMS_LOCAL 0.39 0.46 0.46 1.35 1.72 1.72 1.72 1.72 2.29 2.29 3.18 3.18 4.41 4.35 5.56 5.18 5.92 5.67 6.30 6.30 GDT RMS_ALL_AT 49.70 50.04 50.04 36.45 43.71 43.71 43.71 43.71 45.41 45.41 47.81 47.81 59.83 58.45 51.81 51.58 51.20 50.34 50.14 50.14 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 38.012 0 0.642 0.642 38.578 0.000 0.000 LGA S 57 S 57 32.566 0 0.124 0.132 34.303 0.000 0.000 LGA C 58 C 58 25.850 0 0.716 0.677 28.342 0.000 0.000 LGA K 59 K 59 22.917 0 0.133 1.243 23.991 0.000 0.000 LGA G 60 G 60 18.303 0 0.727 0.727 20.007 0.000 0.000 LGA R 61 R 61 17.868 0 0.132 1.113 26.094 0.000 0.000 LGA C 62 C 62 14.549 0 0.119 0.846 15.373 0.000 0.000 LGA F 63 F 63 10.275 0 0.561 0.431 16.733 3.690 1.342 LGA E 64 E 64 5.464 0 0.000 0.198 9.407 24.881 14.868 LGA L 65 L 65 1.684 0 0.686 0.663 4.655 65.357 54.762 LGA Q 66 Q 66 2.252 0 0.036 1.126 10.282 75.357 39.259 LGA E 67 E 67 2.275 0 0.148 1.299 11.191 67.262 34.392 LGA V 68 V 68 1.703 0 0.071 1.116 6.559 75.119 53.197 LGA G 69 G 69 0.942 0 0.222 0.222 3.737 74.167 74.167 LGA P 70 P 70 0.867 0 0.089 0.142 1.852 81.548 81.565 LGA P 71 P 71 1.750 0 0.609 0.528 5.022 53.810 54.490 LGA D 72 D 72 7.602 3 0.262 0.349 10.027 8.690 4.940 LGA C 73 C 73 12.473 0 0.142 0.134 15.928 0.000 0.000 LGA R 74 R 74 19.298 0 0.063 1.328 25.693 0.000 0.000 LGA C 75 C 75 25.098 0 0.539 0.974 29.229 0.000 0.000 LGA D 76 D 76 30.988 0 0.145 0.983 32.341 0.000 0.000 LGA N 77 N 77 35.872 0 0.677 0.727 37.237 0.000 0.000 LGA L 78 L 78 37.149 0 0.608 1.440 40.088 0.000 0.000 LGA C 79 C 79 36.303 0 0.651 0.843 37.212 0.000 0.000 LGA K 80 K 80 40.288 0 0.629 1.265 44.730 0.000 0.000 LGA S 81 S 81 42.773 0 0.631 0.782 46.059 0.000 0.000 LGA Y 82 Y 82 42.871 0 0.650 1.487 52.179 0.000 0.000 LGA S 83 S 83 43.956 0 0.366 0.655 44.586 0.000 0.000 LGA S 84 S 84 47.124 0 0.644 0.836 48.651 0.000 0.000 LGA C 85 C 85 52.179 0 0.153 0.913 55.746 0.000 0.000 LGA C 86 C 86 53.977 0 0.155 0.871 56.462 0.000 0.000 LGA H 87 H 87 55.399 0 0.601 1.049 58.888 0.000 0.000 LGA D 88 D 88 61.722 0 0.441 1.244 64.511 0.000 0.000 LGA F 89 F 89 66.256 0 0.560 0.574 71.667 0.000 0.000 LGA D 90 D 90 70.172 0 0.618 1.038 71.977 0.000 0.000 LGA E 91 E 91 72.852 0 0.550 1.433 77.194 0.000 0.000 LGA L 92 L 92 78.281 0 0.701 1.036 80.942 0.000 0.000 LGA C 93 C 93 83.498 0 0.660 0.616 87.070 0.000 0.000 LGA L 94 L 94 86.911 0 0.436 1.015 88.186 0.000 0.000 LGA K 95 K 95 91.241 0 0.043 0.908 94.818 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 32.366 32.257 32.749 13.247 10.325 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 7 1.72 18.125 17.244 0.385 LGA_LOCAL RMSD: 1.719 Number of atoms: 7 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 43.715 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 32.366 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.095378 * X + 0.952318 * Y + -0.289815 * Z + 271.469116 Y_new = -0.612058 * X + 0.173501 * Y + 0.771545 * Z + 130.254639 Z_new = 0.785040 * X + 0.250972 * Y + 0.566326 * Z + 118.962563 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.725385 -0.902761 0.417150 [DEG: -98.8573 -51.7244 23.9009 ] ZXZ: -2.782270 0.968755 1.261372 [DEG: -159.4124 55.5056 72.2713 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS275_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS275_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 7 1.72 17.244 32.37 REMARK ---------------------------------------------------------- MOLECULE T0543TS275_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gsoA ATOM 422 N GLY 56 4.307 73.861 -5.208 1.00 11.09 N ATOM 423 CA GLY 56 5.490 73.056 -5.223 1.00 11.09 C ATOM 424 C GLY 56 5.603 72.413 -3.883 1.00 11.09 C ATOM 425 O GLY 56 5.013 72.875 -2.909 1.00 11.09 O ATOM 426 N SER 57 6.376 71.315 -3.804 1.00 10.20 N ATOM 427 CA SER 57 6.547 70.647 -2.553 1.00 10.20 C ATOM 428 CB SER 57 5.855 69.274 -2.483 1.00 10.20 C ATOM 429 OG SER 57 6.073 68.682 -1.211 1.00 10.20 O ATOM 430 C SER 57 8.007 70.412 -2.372 1.00 10.20 C ATOM 431 O SER 57 8.762 70.351 -3.341 1.00 10.20 O ATOM 432 N CYS 58 8.447 70.296 -1.106 1.00 10.77 N ATOM 433 CA CYS 58 9.835 70.064 -0.843 1.00 10.77 C ATOM 434 CB CYS 58 10.516 71.210 -0.074 1.00 10.77 C ATOM 435 SG CYS 58 10.569 72.757 -1.029 1.00 10.77 S ATOM 436 C CYS 58 9.926 68.847 0.013 1.00 10.77 C ATOM 437 O CYS 58 8.925 68.366 0.542 1.00 10.77 O ATOM 438 N LYS 59 11.149 68.302 0.145 1.00 10.95 N ATOM 439 CA LYS 59 11.353 67.145 0.964 1.00 10.95 C ATOM 440 CB LYS 59 12.712 66.456 0.727 1.00 10.95 C ATOM 441 CG LYS 59 13.927 67.382 0.852 1.00 10.95 C ATOM 442 CD LYS 59 14.213 67.867 2.275 1.00 10.95 C ATOM 443 CE LYS 59 14.732 66.769 3.205 1.00 10.95 C ATOM 444 NZ LYS 59 14.978 67.325 4.554 1.00 10.95 N ATOM 445 C LYS 59 11.286 67.594 2.383 1.00 10.95 C ATOM 446 O LYS 59 11.525 68.762 2.686 1.00 10.95 O ATOM 447 N GLY 60 10.939 66.670 3.298 1.00 10.06 N ATOM 448 CA GLY 60 10.848 67.056 4.673 1.00 10.06 C ATOM 449 C GLY 60 10.689 65.820 5.493 1.00 10.06 C ATOM 450 O GLY 60 10.908 64.706 5.018 1.00 10.06 O ATOM 451 N ARG 61 10.296 66.009 6.767 1.00 11.79 N ATOM 452 CA ARG 61 10.110 64.920 7.677 1.00 11.79 C ATOM 453 CB ARG 61 9.077 63.893 7.177 1.00 11.79 C ATOM 454 CG ARG 61 8.763 62.784 8.184 1.00 11.79 C ATOM 455 CD ARG 61 7.737 61.768 7.683 1.00 11.79 C ATOM 456 NE ARG 61 7.540 60.761 8.766 1.00 11.79 N ATOM 457 CZ ARG 61 8.348 59.665 8.834 1.00 11.79 C ATOM 458 NH1 ARG 61 9.334 59.487 7.906 1.00 11.79 H ATOM 459 NH2 ARG 61 8.175 58.749 9.833 1.00 11.79 H ATOM 460 C ARG 61 11.426 64.236 7.853 1.00 11.79 C ATOM 461 O ARG 61 11.491 63.047 8.159 1.00 11.79 O ATOM 462 N CYS 62 12.529 64.985 7.669 1.00 13.11 N ATOM 463 CA CYS 62 13.820 64.400 7.869 1.00 13.11 C ATOM 464 CB CYS 62 14.973 65.210 7.248 1.00 13.11 C ATOM 465 SG CYS 62 15.147 66.860 7.993 1.00 13.11 S ATOM 466 C CYS 62 14.044 64.347 9.344 1.00 13.11 C ATOM 467 O CYS 62 13.498 65.154 10.094 1.00 13.11 O ATOM 468 N PHE 63 14.843 63.367 9.806 1.00 15.00 N ATOM 469 CA PHE 63 15.098 63.276 11.212 1.00 15.00 C ATOM 470 CB PHE 63 14.919 61.862 11.788 1.00 15.00 C ATOM 471 CG PHE 63 13.465 61.539 11.741 1.00 15.00 C ATOM 472 CD1 PHE 63 12.891 61.055 10.588 1.00 15.00 C ATOM 473 CD2 PHE 63 12.675 61.717 12.854 1.00 15.00 C ATOM 474 CE1 PHE 63 11.549 60.758 10.545 1.00 15.00 C ATOM 475 CE2 PHE 63 11.334 61.420 12.818 1.00 15.00 C ATOM 476 CZ PHE 63 10.768 60.939 11.662 1.00 15.00 C ATOM 477 C PHE 63 16.519 63.669 11.432 1.00 15.00 C ATOM 478 O PHE 63 17.411 63.269 10.685 1.00 15.00 O ATOM 479 N GLU 64 16.756 64.495 12.467 1.00 14.92 N ATOM 480 CA GLU 64 18.084 64.935 12.764 1.00 14.92 C ATOM 481 CB GLU 64 18.124 66.237 13.581 1.00 14.92 C ATOM 482 CG GLU 64 17.455 66.109 14.950 1.00 14.92 C ATOM 483 CD GLU 64 17.556 67.452 15.660 1.00 14.92 C ATOM 484 OE1 GLU 64 18.080 68.416 15.039 1.00 14.92 O ATOM 485 OE2 GLU 64 17.105 67.532 16.834 1.00 14.92 O ATOM 486 C GLU 64 18.746 63.878 13.582 1.00 14.92 C ATOM 487 O GLU 64 18.102 63.197 14.379 1.00 14.92 O ATOM 488 N LEU 65 20.065 63.702 13.381 1.00 15.00 N ATOM 489 CA LEU 65 20.800 62.754 14.164 1.00 15.00 C ATOM 490 CB LEU 65 21.485 61.656 13.334 1.00 15.00 C ATOM 491 CG LEU 65 20.494 60.736 12.599 1.00 15.00 C ATOM 492 CD1 LEU 65 21.227 59.626 11.829 1.00 15.00 C ATOM 493 CD2 LEU 65 19.423 60.193 13.559 1.00 15.00 C ATOM 494 C LEU 65 21.868 63.528 14.859 1.00 15.00 C ATOM 495 O LEU 65 22.423 64.473 14.300 1.00 15.00 O ATOM 496 N GLN 66 22.173 63.162 16.117 1.00 15.00 N ATOM 497 CA GLN 66 23.181 63.888 16.829 1.00 15.00 C ATOM 498 CB GLN 66 22.664 64.560 18.111 1.00 15.00 C ATOM 499 CG GLN 66 21.634 65.661 17.858 1.00 15.00 C ATOM 500 CD GLN 66 21.221 66.226 19.209 1.00 15.00 C ATOM 501 OE1 GLN 66 20.928 65.484 20.144 1.00 15.00 O ATOM 502 NE2 GLN 66 21.200 67.582 19.320 1.00 15.00 N ATOM 503 C GLN 66 24.242 62.924 17.241 1.00 15.00 C ATOM 504 O GLN 66 23.977 61.743 17.456 1.00 15.00 O ATOM 505 N GLU 67 25.489 63.420 17.336 1.00 15.00 N ATOM 506 CA GLU 67 26.577 62.596 17.767 1.00 15.00 C ATOM 507 CB GLU 67 27.749 62.545 16.771 1.00 15.00 C ATOM 508 CG GLU 67 28.377 63.913 16.492 1.00 15.00 C ATOM 509 CD GLU 67 29.517 63.717 15.503 1.00 15.00 C ATOM 510 OE1 GLU 67 29.796 62.542 15.144 1.00 15.00 O ATOM 511 OE2 GLU 67 30.126 64.742 15.095 1.00 15.00 O ATOM 512 C GLU 67 27.088 63.203 19.031 1.00 15.00 C ATOM 513 O GLU 67 27.159 64.424 19.157 1.00 15.00 O ATOM 514 N VAL 68 27.435 62.358 20.021 1.00 15.00 N ATOM 515 CA VAL 68 27.920 62.886 21.258 1.00 15.00 C ATOM 516 CB VAL 68 26.927 62.798 22.380 1.00 15.00 C ATOM 517 CG1 VAL 68 26.632 61.313 22.655 1.00 15.00 C ATOM 518 CG2 VAL 68 27.495 63.552 23.595 1.00 15.00 C ATOM 519 C VAL 68 29.112 62.087 21.665 1.00 15.00 C ATOM 520 O VAL 68 29.302 60.957 21.218 1.00 15.00 O ATOM 521 N GLY 69 29.967 62.682 22.519 1.00 15.00 N ATOM 522 CA GLY 69 31.123 61.988 22.997 1.00 15.00 C ATOM 523 C GLY 69 31.564 62.686 24.240 1.00 15.00 C ATOM 524 O GLY 69 31.416 63.900 24.379 1.00 15.00 O ATOM 525 N PRO 70 32.092 61.927 25.155 1.00 15.00 N ATOM 526 CA PRO 70 32.581 62.500 26.377 1.00 15.00 C ATOM 527 CD PRO 70 31.642 60.558 25.343 1.00 15.00 C ATOM 528 CB PRO 70 32.600 61.368 27.409 1.00 15.00 C ATOM 529 CG PRO 70 32.412 60.083 26.584 1.00 15.00 C ATOM 530 C PRO 70 33.915 63.119 26.137 1.00 15.00 C ATOM 531 O PRO 70 34.595 62.725 25.191 1.00 15.00 O ATOM 532 N PRO 71 34.283 64.081 26.934 1.00 12.75 N ATOM 533 CA PRO 71 35.576 64.683 26.787 1.00 12.75 C ATOM 534 CD PRO 71 33.313 65.006 27.495 1.00 12.75 C ATOM 535 CB PRO 71 35.488 66.062 27.446 1.00 12.75 C ATOM 536 CG PRO 71 34.175 66.030 28.250 1.00 12.75 C ATOM 537 C PRO 71 36.602 63.788 27.395 1.00 12.75 C ATOM 538 O PRO 71 36.270 63.045 28.316 1.00 12.75 O ATOM 539 N ASP 72 37.849 63.829 26.888 1.00 15.00 N ATOM 540 CA ASP 72 38.882 63.022 27.462 1.00 15.00 C ATOM 541 CB ASP 72 39.403 61.931 26.510 1.00 15.00 C ATOM 542 CG ASP 72 40.375 61.041 27.274 1.00 15.00 C ATOM 543 OD1 ASP 72 40.663 61.358 28.460 1.00 15.00 O ATOM 544 OD2 ASP 72 40.844 60.034 26.681 1.00 15.00 O ATOM 545 C ASP 72 40.022 63.936 27.759 1.00 15.00 C ATOM 546 O ASP 72 40.802 64.272 26.870 1.00 15.00 O ATOM 547 N CYS 73 40.141 64.384 29.023 1.00 12.89 N ATOM 548 CA CYS 73 41.226 65.262 29.340 1.00 12.89 C ATOM 549 CB CYS 73 40.811 66.739 29.435 1.00 12.89 C ATOM 550 SG CYS 73 39.609 67.039 30.765 1.00 12.89 S ATOM 551 C CYS 73 41.771 64.870 30.674 1.00 12.89 C ATOM 552 O CYS 73 41.045 64.382 31.539 1.00 12.89 O ATOM 553 N ARG 74 43.092 65.057 30.857 1.00 14.01 N ATOM 554 CA ARG 74 43.706 64.770 32.117 1.00 14.01 C ATOM 555 CB ARG 74 44.502 63.454 32.132 1.00 14.01 C ATOM 556 CG ARG 74 45.030 63.077 33.517 1.00 14.01 C ATOM 557 CD ARG 74 43.929 62.645 34.489 1.00 14.01 C ATOM 558 NE ARG 74 44.576 62.310 35.786 1.00 14.01 N ATOM 559 CZ ARG 74 44.792 63.289 36.712 1.00 14.01 C ATOM 560 NH1 ARG 74 44.407 64.571 36.451 1.00 14.01 H ATOM 561 NH2 ARG 74 45.392 62.985 37.900 1.00 14.01 H ATOM 562 C ARG 74 44.681 65.873 32.363 1.00 14.01 C ATOM 563 O ARG 74 45.258 66.417 31.423 1.00 14.01 O ATOM 564 N CYS 75 44.879 66.255 33.639 1.00 12.36 N ATOM 565 CA CYS 75 45.813 67.309 33.900 1.00 12.36 C ATOM 566 CB CYS 75 45.163 68.572 34.490 1.00 12.36 C ATOM 567 SG CYS 75 44.425 68.273 36.124 1.00 12.36 S ATOM 568 C CYS 75 46.799 66.815 34.905 1.00 12.36 C ATOM 569 O CYS 75 46.428 66.225 35.918 1.00 12.36 O ATOM 570 N ASP 76 48.100 67.029 34.631 1.00 12.12 N ATOM 571 CA ASP 76 49.109 66.626 35.565 1.00 12.12 C ATOM 572 CB ASP 76 50.007 65.482 35.061 1.00 12.12 C ATOM 573 CG ASP 76 50.769 65.970 33.837 1.00 12.12 C ATOM 574 OD1 ASP 76 50.159 66.702 33.013 1.00 12.12 O ATOM 575 OD2 ASP 76 51.971 65.614 33.710 1.00 12.12 O ATOM 576 C ASP 76 49.981 67.813 35.814 1.00 12.12 C ATOM 577 O ASP 76 50.414 68.485 34.878 1.00 12.12 O ATOM 578 N ASN 77 50.241 68.123 37.098 1.00 11.46 N ATOM 579 CA ASN 77 51.090 69.239 37.394 1.00 11.46 C ATOM 580 CB ASN 77 50.426 70.307 38.282 1.00 11.46 C ATOM 581 CG ASN 77 49.342 70.997 37.467 1.00 11.46 C ATOM 582 OD1 ASN 77 49.542 71.334 36.301 1.00 11.46 O ATOM 583 ND2 ASN 77 48.156 71.214 38.096 1.00 11.46 N ATOM 584 C ASN 77 52.265 68.714 38.150 1.00 11.46 C ATOM 585 O ASN 77 52.128 67.840 39.004 1.00 11.46 O ATOM 586 N LEU 78 53.468 69.226 37.830 1.00 10.96 N ATOM 587 CA LEU 78 54.636 68.787 38.529 1.00 10.96 C ATOM 588 CB LEU 78 55.754 68.275 37.604 1.00 10.96 C ATOM 589 CG LEU 78 55.368 67.009 36.816 1.00 10.96 C ATOM 590 CD1 LEU 78 56.521 66.542 35.915 1.00 10.96 C ATOM 591 CD2 LEU 78 54.864 65.899 37.753 1.00 10.96 C ATOM 592 C LEU 78 55.180 69.966 39.264 1.00 10.96 C ATOM 593 O LEU 78 55.308 71.054 38.704 1.00 10.96 O ATOM 594 N CYS 79 55.496 69.783 40.560 1.00 10.46 N ATOM 595 CA CYS 79 56.043 70.865 41.316 1.00 10.46 C ATOM 596 CB CYS 79 55.073 71.448 42.357 1.00 10.46 C ATOM 597 SG CYS 79 53.622 72.231 41.587 1.00 10.46 S ATOM 598 C CYS 79 57.221 70.332 42.063 1.00 10.46 C ATOM 599 O CYS 79 57.266 69.153 42.411 1.00 10.46 O ATOM 600 N LYS 80 58.226 71.195 42.304 1.00 10.32 N ATOM 601 CA LYS 80 59.374 70.764 43.044 1.00 10.32 C ATOM 602 CB LYS 80 60.681 70.795 42.232 1.00 10.32 C ATOM 603 CG LYS 80 61.900 70.324 43.029 1.00 10.32 C ATOM 604 CD LYS 80 63.140 70.072 42.167 1.00 10.32 C ATOM 605 CE LYS 80 63.048 68.811 41.308 1.00 10.32 C ATOM 606 NZ LYS 80 64.289 68.646 40.517 1.00 10.32 N ATOM 607 C LYS 80 59.552 71.718 44.177 1.00 10.32 C ATOM 608 O LYS 80 59.389 72.925 44.017 1.00 10.32 O ATOM 609 N SER 81 59.874 71.188 45.373 1.00 10.92 N ATOM 610 CA SER 81 60.099 72.056 46.488 1.00 10.92 C ATOM 611 CB SER 81 59.764 71.421 47.848 1.00 10.92 C ATOM 612 OG SER 81 60.019 72.347 48.894 1.00 10.92 O ATOM 613 C SER 81 61.552 72.386 46.494 1.00 10.92 C ATOM 614 O SER 81 62.384 71.547 46.159 1.00 10.92 O ATOM 615 N TYR 82 61.888 73.638 46.859 1.00 9.84 N ATOM 616 CA TYR 82 63.268 74.013 46.911 1.00 9.84 C ATOM 617 CB TYR 82 63.652 75.093 45.888 1.00 9.84 C ATOM 618 CG TYR 82 65.104 75.382 46.058 1.00 9.84 C ATOM 619 CD1 TYR 82 66.055 74.587 45.461 1.00 9.84 C ATOM 620 CD2 TYR 82 65.513 76.454 46.816 1.00 9.84 C ATOM 621 CE1 TYR 82 67.393 74.860 45.621 1.00 9.84 C ATOM 622 CE2 TYR 82 66.850 76.731 46.979 1.00 9.84 C ATOM 623 CZ TYR 82 67.794 75.932 46.381 1.00 9.84 C ATOM 624 OH TYR 82 69.168 76.209 46.541 1.00 9.84 H ATOM 625 C TYR 82 63.522 74.586 48.264 1.00 9.84 C ATOM 626 O TYR 82 62.783 75.457 48.725 1.00 9.84 O ATOM 627 N SER 83 64.569 74.093 48.950 1.00 9.72 N ATOM 628 CA SER 83 64.877 74.646 50.235 1.00 9.72 C ATOM 629 CB SER 83 64.230 73.884 51.405 1.00 9.72 C ATOM 630 OG SER 83 64.585 74.492 52.638 1.00 9.72 O ATOM 631 C SER 83 66.354 74.553 50.418 1.00 9.72 C ATOM 632 O SER 83 66.996 73.614 49.943 1.00 9.72 O ATOM 633 N SER 84 66.941 75.555 51.099 1.00 9.70 N ATOM 634 CA SER 84 68.343 75.511 51.374 1.00 9.70 C ATOM 635 CB SER 84 69.206 76.199 50.303 1.00 9.70 C ATOM 636 OG SER 84 69.092 75.511 49.066 1.00 9.70 O ATOM 637 C SER 84 68.548 76.260 52.647 1.00 9.70 C ATOM 638 O SER 84 67.829 77.216 52.937 1.00 9.70 O ATOM 639 N CYS 85 69.532 75.827 53.458 1.00 9.41 N ATOM 640 CA CYS 85 69.783 76.537 54.677 1.00 9.41 C ATOM 641 CB CYS 85 69.398 75.746 55.938 1.00 9.41 C ATOM 642 SG CYS 85 69.730 76.674 57.465 1.00 9.41 S ATOM 643 C CYS 85 71.253 76.775 54.743 1.00 9.41 C ATOM 644 O CYS 85 72.047 75.833 54.735 1.00 9.41 O ATOM 645 N CYS 86 71.662 78.053 54.788 1.00 10.02 N ATOM 646 CA CYS 86 73.059 78.332 54.899 1.00 10.02 C ATOM 647 CB CYS 86 73.670 78.933 53.622 1.00 10.02 C ATOM 648 SG CYS 86 75.448 79.273 53.786 1.00 10.02 S ATOM 649 C CYS 86 73.222 79.343 55.982 1.00 10.02 C ATOM 650 O CYS 86 72.761 80.478 55.858 1.00 10.02 O ATOM 651 N HIS 87 73.871 78.950 57.093 1.00 8.79 N ATOM 652 CA HIS 87 74.089 79.894 58.145 1.00 8.79 C ATOM 653 ND1 HIS 87 72.766 81.796 60.577 1.00 8.79 N ATOM 654 CG HIS 87 73.456 80.607 60.503 1.00 8.79 C ATOM 655 CB HIS 87 73.269 79.591 59.414 1.00 8.79 C ATOM 656 NE2 HIS 87 74.127 81.741 62.335 1.00 8.79 N ATOM 657 CD2 HIS 87 74.283 80.590 61.584 1.00 8.79 C ATOM 658 CE1 HIS 87 73.205 82.435 61.691 1.00 8.79 C ATOM 659 C HIS 87 75.529 79.801 58.515 1.00 8.79 C ATOM 660 O HIS 87 75.928 78.915 59.269 1.00 8.79 O ATOM 661 N ASP 88 76.359 80.712 57.974 1.00 10.52 N ATOM 662 CA ASP 88 77.748 80.672 58.314 1.00 10.52 C ATOM 663 CB ASP 88 78.639 80.109 57.191 1.00 10.52 C ATOM 664 CG ASP 88 80.051 79.944 57.737 1.00 10.52 C ATOM 665 OD1 ASP 88 80.283 80.335 58.912 1.00 10.52 O ATOM 666 OD2 ASP 88 80.916 79.416 56.988 1.00 10.52 O ATOM 667 C ASP 88 78.187 82.074 58.567 1.00 10.52 C ATOM 668 O ASP 88 78.351 82.858 57.632 1.00 10.52 O ATOM 669 N PHE 89 78.377 82.437 59.849 1.00 10.47 N ATOM 670 CA PHE 89 78.833 83.765 60.128 1.00 10.47 C ATOM 671 CB PHE 89 77.916 84.542 61.089 1.00 10.47 C ATOM 672 CG PHE 89 78.474 85.916 61.231 1.00 10.47 C ATOM 673 CD1 PHE 89 78.178 86.886 60.301 1.00 10.47 C ATOM 674 CD2 PHE 89 79.290 86.238 62.291 1.00 10.47 C ATOM 675 CE1 PHE 89 78.687 88.157 60.425 1.00 10.47 C ATOM 676 CE2 PHE 89 79.802 87.508 62.420 1.00 10.47 C ATOM 677 CZ PHE 89 79.503 88.469 61.486 1.00 10.47 C ATOM 678 C PHE 89 80.162 83.625 60.792 1.00 10.47 C ATOM 679 O PHE 89 80.313 82.864 61.745 1.00 10.47 O ATOM 680 N ASP 90 81.175 84.350 60.283 1.00 11.15 N ATOM 681 CA ASP 90 82.476 84.259 60.872 1.00 11.15 C ATOM 682 CB ASP 90 83.549 83.726 59.905 1.00 11.15 C ATOM 683 CG ASP 90 84.820 83.423 60.689 1.00 11.15 C ATOM 684 OD1 ASP 90 84.956 83.925 61.837 1.00 11.15 O ATOM 685 OD2 ASP 90 85.674 82.673 60.146 1.00 11.15 O ATOM 686 C ASP 90 82.883 85.635 61.280 1.00 11.15 C ATOM 687 O ASP 90 82.846 86.568 60.480 1.00 11.15 O ATOM 688 N GLU 91 83.265 85.799 62.560 1.00 10.96 N ATOM 689 CA GLU 91 83.709 87.085 63.007 1.00 10.96 C ATOM 690 CB GLU 91 83.009 87.570 64.287 1.00 10.96 C ATOM 691 CG GLU 91 83.252 86.663 65.496 1.00 10.96 C ATOM 692 CD GLU 91 82.529 85.346 65.254 1.00 10.96 C ATOM 693 OE1 GLU 91 81.432 85.379 64.636 1.00 10.96 O ATOM 694 OE2 GLU 91 83.068 84.288 65.679 1.00 10.96 O ATOM 695 C GLU 91 85.159 86.945 63.322 1.00 10.96 C ATOM 696 O GLU 91 85.560 86.041 64.053 1.00 10.96 O ATOM 697 N LEU 92 85.994 87.834 62.754 1.00 10.93 N ATOM 698 CA LEU 92 87.397 87.750 63.026 1.00 10.93 C ATOM 699 CB LEU 92 88.249 87.480 61.774 1.00 10.93 C ATOM 700 CG LEU 92 87.963 86.117 61.119 1.00 10.93 C ATOM 701 CD1 LEU 92 86.514 86.033 60.615 1.00 10.93 C ATOM 702 CD2 LEU 92 88.994 85.794 60.025 1.00 10.93 C ATOM 703 C LEU 92 87.832 89.064 63.582 1.00 10.93 C ATOM 704 O LEU 92 87.440 90.121 63.088 1.00 10.93 O ATOM 705 N CYS 93 88.644 89.025 64.654 1.00 11.17 N ATOM 706 CA CYS 93 89.143 90.241 65.222 1.00 11.17 C ATOM 707 CB CYS 93 88.646 90.501 66.655 1.00 11.17 C ATOM 708 SG CYS 93 86.847 90.753 66.732 1.00 11.17 S ATOM 709 C CYS 93 90.628 90.102 65.292 1.00 11.17 C ATOM 710 O CYS 93 91.143 89.051 65.671 1.00 11.17 O ATOM 711 N LEU 94 91.361 91.162 64.905 1.00 10.92 N ATOM 712 CA LEU 94 92.789 91.077 64.967 1.00 10.92 C ATOM 713 CB LEU 94 93.474 91.275 63.603 1.00 10.92 C ATOM 714 CG LEU 94 93.120 90.183 62.575 1.00 10.92 C ATOM 715 CD1 LEU 94 93.641 88.807 63.020 1.00 10.92 C ATOM 716 CD2 LEU 94 91.616 90.180 62.255 1.00 10.92 C ATOM 717 C LEU 94 93.269 92.173 65.859 1.00 10.92 C ATOM 718 O LEU 94 92.949 93.343 65.649 1.00 10.92 O ATOM 719 N LYS 95 94.040 91.814 66.902 1.00 11.08 N ATOM 720 CA LYS 95 94.583 92.817 67.767 1.00 11.08 C ATOM 721 CB LYS 95 93.807 92.978 69.086 1.00 11.08 C ATOM 722 CG LYS 95 94.375 94.065 70.000 1.00 11.08 C ATOM 723 CD LYS 95 94.201 95.481 69.447 1.00 11.08 C ATOM 724 CE LYS 95 92.758 95.987 69.504 1.00 11.08 C ATOM 725 NZ LYS 95 92.394 96.320 70.899 1.00 11.08 N ATOM 726 C LYS 95 95.964 92.376 68.120 1.00 11.08 C ATOM 727 O LYS 95 96.176 91.221 68.486 1.00 11.08 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.63 28.2 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 98.21 28.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 84.83 27.3 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.58 38.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 93.50 40.0 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 95.59 36.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 92.25 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.40 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 76.03 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 97.35 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 51.46 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.76 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 90.15 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 90.77 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 95.17 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.91 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 80.91 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 78.85 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 88.66 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 32.37 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 32.37 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.8092 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 32.99 29 100.0 29 CRMSCA BURIED . . . . . . . . 30.65 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 32.21 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 32.77 142 100.0 142 CRMSMC BURIED . . . . . . . . 30.70 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 33.46 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 33.54 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 34.69 103 100.0 103 CRMSSC BURIED . . . . . . . . 30.06 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 32.83 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 33.73 219 100.0 219 CRMSALL BURIED . . . . . . . . 30.36 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 18.253 0.385 0.219 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 18.432 0.374 0.195 29 100.0 29 ERRCA BURIED . . . . . . . . 17.783 0.414 0.281 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 18.204 0.387 0.222 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 18.363 0.377 0.200 142 100.0 142 ERRMC BURIED . . . . . . . . 17.794 0.413 0.281 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 19.589 0.415 0.234 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 19.784 0.422 0.242 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 20.180 0.400 0.203 103 100.0 103 ERRSC BURIED . . . . . . . . 18.069 0.455 0.315 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 18.896 0.401 0.229 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 19.272 0.388 0.202 219 100.0 219 ERRALL BURIED . . . . . . . . 17.914 0.433 0.298 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 9 40 40 DISTCA CA (P) 0.00 0.00 0.00 0.00 22.50 40 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.02 DISTCA ALL (N) 0 2 3 7 58 303 303 DISTALL ALL (P) 0.00 0.66 0.99 2.31 19.14 303 DISTALL ALL (RMS) 0.00 1.75 2.12 3.38 7.67 DISTALL END of the results output