####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS242_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS242_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.03 2.03 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 39 56 - 94 1.93 2.05 LCS_AVERAGE: 96.88 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 71 - 94 0.96 2.11 LCS_AVERAGE: 41.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 39 40 5 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 39 40 6 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 39 40 6 22 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 39 40 5 17 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 39 40 6 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 39 40 3 4 7 20 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 39 40 3 19 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 39 40 3 4 5 5 16 34 36 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 39 40 3 4 5 7 14 29 35 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 39 40 3 4 19 31 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 39 40 3 4 7 29 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 39 40 0 4 5 11 18 34 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 39 40 1 3 4 7 7 12 15 36 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 24 39 40 4 11 27 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 24 39 40 4 21 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 24 39 40 5 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 24 39 40 5 15 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 24 39 40 7 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 24 39 40 7 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 24 39 40 9 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 24 39 40 7 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 24 39 40 6 22 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 24 39 40 6 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 24 39 40 3 19 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 24 39 40 8 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 24 39 40 8 22 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 24 39 40 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 29 40 3 3 12 16 31 34 37 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 79.38 ( 41.25 96.88 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 23 29 32 34 35 37 37 39 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 30.00 57.50 72.50 80.00 85.00 87.50 92.50 92.50 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.31 0.68 0.85 1.01 1.17 1.26 1.59 1.55 1.93 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 GDT RMS_ALL_AT 2.23 2.16 2.16 2.10 2.08 2.08 2.05 2.07 2.05 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 2.03 # Checking swapping # possible swapping detected: E 67 E 67 # possible swapping detected: D 88 D 88 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.643 0 0.186 0.186 1.976 75.000 75.000 LGA S 57 S 57 0.876 0 0.142 0.731 3.609 83.810 76.667 LGA C 58 C 58 0.920 0 0.173 0.220 2.042 81.786 80.238 LGA K 59 K 59 1.025 0 0.434 0.913 4.967 68.452 59.365 LGA G 60 G 60 1.523 0 0.130 0.130 1.523 81.548 81.548 LGA R 61 R 61 0.801 0 0.098 1.014 3.317 92.857 82.771 LGA C 62 C 62 0.265 0 0.501 0.530 1.985 93.214 90.794 LGA F 63 F 63 3.020 0 0.210 0.171 7.874 63.214 33.896 LGA E 64 E 64 1.300 0 0.645 0.911 3.504 75.119 63.915 LGA L 65 L 65 3.866 0 0.575 0.533 5.710 37.976 39.107 LGA Q 66 Q 66 4.733 0 0.049 0.978 10.794 55.952 28.095 LGA E 67 E 67 2.504 0 0.229 1.280 11.102 61.429 32.169 LGA V 68 V 68 2.410 0 0.603 1.380 7.162 57.500 41.088 LGA G 69 G 69 4.732 0 0.501 0.501 5.409 33.452 33.452 LGA P 70 P 70 6.039 0 0.101 0.122 10.069 25.714 15.510 LGA P 71 P 71 2.420 0 0.173 0.478 3.331 67.262 60.884 LGA D 72 D 72 1.556 3 0.314 0.378 3.011 79.286 45.893 LGA C 73 C 73 0.844 0 0.109 0.562 3.168 88.214 79.286 LGA R 74 R 74 0.700 0 0.059 0.162 1.018 90.476 89.654 LGA C 75 C 75 0.515 0 0.145 0.128 1.379 88.214 87.460 LGA D 76 D 76 0.848 0 0.107 0.335 1.720 88.214 81.607 LGA N 77 N 77 2.011 0 0.159 0.410 4.640 70.952 61.905 LGA L 78 L 78 1.451 0 0.049 0.917 4.124 83.810 73.869 LGA C 79 C 79 0.532 0 0.054 0.080 0.951 95.238 93.651 LGA K 80 K 80 0.375 0 0.060 0.737 2.103 95.238 85.820 LGA S 81 S 81 0.847 0 0.090 0.084 1.339 88.214 85.952 LGA Y 82 Y 82 0.479 0 0.133 0.169 1.615 97.619 88.373 LGA S 83 S 83 0.802 0 0.286 0.255 1.221 88.214 85.952 LGA S 84 S 84 1.130 0 0.197 0.183 1.174 85.952 85.952 LGA C 85 C 85 0.890 0 0.048 0.799 2.407 85.952 81.667 LGA C 86 C 86 1.237 0 0.221 0.744 3.393 81.548 76.270 LGA H 87 H 87 0.656 0 0.149 1.064 7.133 90.595 61.048 LGA D 88 D 88 0.600 0 0.095 0.878 3.280 92.857 78.333 LGA F 89 F 89 0.668 0 0.050 0.104 1.163 88.214 90.563 LGA D 90 D 90 1.031 0 0.017 0.218 1.544 83.690 81.488 LGA E 91 E 91 0.785 0 0.071 0.621 2.039 88.214 80.741 LGA L 92 L 92 0.287 0 0.491 0.893 2.047 88.810 83.095 LGA C 93 C 93 0.700 0 0.614 1.038 2.663 82.143 81.905 LGA L 94 L 94 0.644 0 0.402 1.365 6.331 73.690 56.190 LGA K 95 K 95 4.134 0 0.640 1.057 11.463 39.881 27.619 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.031 2.014 3.168 77.238 68.470 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 37 1.55 82.500 89.712 2.236 LGA_LOCAL RMSD: 1.555 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.066 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.031 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.989914 * X + -0.136649 * Y + 0.037382 * Z + 41.459641 Y_new = -0.140974 * X + 0.976264 * Y + -0.164422 * Z + 54.106903 Z_new = -0.014027 * X + -0.168034 * Y + -0.985681 * Z + 34.885319 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.000134 0.014027 -2.972741 [DEG: -171.8950 0.8037 -170.3255 ] ZXZ: 0.223554 2.972165 -3.058310 [DEG: 12.8087 170.2925 -175.2283 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS242_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS242_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 37 1.55 89.712 2.03 REMARK ---------------------------------------------------------- MOLECULE T0543TS242_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2cqw_A ATOM 422 N GLY 56 34.060 70.613 17.747 1.00 99.90 N ATOM 423 CA GLY 56 34.041 71.234 19.036 1.00 99.90 C ATOM 424 C GLY 56 33.146 72.423 18.942 1.00 99.90 C ATOM 425 O GLY 56 32.806 73.038 19.951 1.00 99.90 O ATOM 426 N SER 57 32.748 72.783 17.710 1.00 99.90 N ATOM 427 CA SER 57 31.993 73.983 17.527 1.00 99.90 C ATOM 428 C SER 57 30.548 73.634 17.660 1.00 99.90 C ATOM 429 O SER 57 30.167 72.466 17.609 1.00 99.90 O ATOM 430 CB SER 57 32.193 74.619 16.143 1.00 99.90 C ATOM 431 OG SER 57 32.839 73.696 15.278 1.00 99.90 O ATOM 432 N CYS 58 29.705 74.665 17.853 1.00 99.90 N ATOM 433 CA CYS 58 28.289 74.459 17.881 1.00 99.90 C ATOM 434 C CYS 58 27.731 75.186 16.705 1.00 99.90 C ATOM 435 O CYS 58 26.622 75.716 16.756 1.00 99.90 O ATOM 436 CB CYS 58 27.618 75.052 19.134 1.00 99.90 C ATOM 437 SG CYS 58 28.261 74.336 20.676 1.00 99.90 S ATOM 438 N LYS 59 28.503 75.233 15.603 1.00 99.90 N ATOM 439 CA LYS 59 28.155 76.106 14.524 1.00 99.90 C ATOM 440 C LYS 59 26.911 75.567 13.902 1.00 99.90 C ATOM 441 O LYS 59 25.804 75.857 14.354 1.00 99.90 O ATOM 442 CB LYS 59 29.239 76.182 13.437 1.00 99.90 C ATOM 443 CG LYS 59 30.451 77.020 13.851 1.00 99.90 C ATOM 444 CD LYS 59 31.797 76.354 13.556 1.00 99.90 C ATOM 445 CE LYS 59 32.978 77.327 13.593 1.00 99.90 C ATOM 446 NZ LYS 59 33.788 77.194 12.361 1.00 99.90 N ATOM 447 N GLY 60 27.069 74.759 12.838 1.00 99.90 N ATOM 448 CA GLY 60 25.922 74.227 12.169 1.00 99.90 C ATOM 449 C GLY 60 25.696 72.860 12.713 1.00 99.90 C ATOM 450 O GLY 60 25.109 72.003 12.055 1.00 99.90 O ATOM 451 N ARG 61 26.171 72.622 13.948 1.00 99.90 N ATOM 452 CA ARG 61 25.952 71.353 14.568 1.00 99.90 C ATOM 453 C ARG 61 24.642 71.435 15.280 1.00 99.90 C ATOM 454 O ARG 61 24.330 70.601 16.128 1.00 99.90 O ATOM 455 CB ARG 61 27.032 70.995 15.602 1.00 99.90 C ATOM 456 CG ARG 61 28.340 70.508 14.974 1.00 99.90 C ATOM 457 CD ARG 61 29.404 70.105 15.998 1.00 99.90 C ATOM 458 NE ARG 61 28.924 68.878 16.691 1.00 99.90 N ATOM 459 CZ ARG 61 29.446 68.525 17.902 1.00 99.90 C ATOM 460 NH1 ARG 61 30.415 69.291 18.484 1.00 99.90 H ATOM 461 NH2 ARG 61 28.992 67.405 18.541 1.00 99.90 H ATOM 462 N CYS 62 23.833 72.455 14.937 1.00 99.90 N ATOM 463 CA CYS 62 22.574 72.631 15.594 1.00 99.90 C ATOM 464 C CYS 62 21.795 71.374 15.407 1.00 99.90 C ATOM 465 O CYS 62 21.612 70.595 16.342 1.00 99.90 O ATOM 466 CB CYS 62 21.745 73.786 15.005 1.00 99.90 C ATOM 467 SG CYS 62 22.693 75.333 14.906 1.00 99.90 S ATOM 468 N PHE 63 21.327 71.143 14.168 1.00 99.90 N ATOM 469 CA PHE 63 20.482 70.019 13.889 1.00 99.90 C ATOM 470 C PHE 63 21.262 68.778 14.172 1.00 99.90 C ATOM 471 O PHE 63 20.689 67.695 14.294 1.00 99.90 O ATOM 472 CB PHE 63 20.041 69.957 12.418 1.00 99.90 C ATOM 473 CG PHE 63 19.429 71.273 12.080 1.00 99.90 C ATOM 474 CD1 PHE 63 18.303 71.710 12.738 1.00 99.90 C ATOM 475 CD2 PHE 63 19.983 72.068 11.102 1.00 99.90 C ATOM 476 CE1 PHE 63 17.739 72.924 12.427 1.00 99.90 C ATOM 477 CE2 PHE 63 19.421 73.283 10.787 1.00 99.90 C ATOM 478 CZ PHE 63 18.298 73.714 11.451 1.00 99.90 C ATOM 479 N GLU 64 22.598 68.915 14.284 1.00 99.90 N ATOM 480 CA GLU 64 23.470 67.786 14.410 1.00 99.90 C ATOM 481 C GLU 64 23.004 66.962 15.563 1.00 99.90 C ATOM 482 O GLU 64 23.234 65.755 15.608 1.00 99.90 O ATOM 483 CB GLU 64 24.929 68.190 14.681 1.00 99.90 C ATOM 484 CG GLU 64 25.669 68.654 13.425 1.00 99.90 C ATOM 485 CD GLU 64 27.101 68.144 13.497 1.00 99.90 C ATOM 486 OE1 GLU 64 27.896 68.489 12.583 1.00 99.90 O ATOM 487 OE2 GLU 64 27.420 67.403 14.464 1.00 99.90 O ATOM 488 N LEU 65 22.310 67.601 16.521 1.00 99.90 N ATOM 489 CA LEU 65 21.874 66.885 17.678 1.00 99.90 C ATOM 490 C LEU 65 23.091 66.450 18.414 1.00 99.90 C ATOM 491 O LEU 65 24.108 67.143 18.429 1.00 99.90 O ATOM 492 CB LEU 65 21.049 65.631 17.341 1.00 99.90 C ATOM 493 CG LEU 65 19.588 65.937 16.966 1.00 99.90 C ATOM 494 CD1 LEU 65 19.006 64.860 16.037 1.00 99.90 C ATOM 495 CD2 LEU 65 18.733 66.175 18.221 1.00 99.90 C ATOM 496 N GLN 66 23.004 65.278 19.067 1.00 99.90 N ATOM 497 CA GLN 66 24.058 64.862 19.936 1.00 99.90 C ATOM 498 C GLN 66 25.108 64.251 19.079 1.00 99.90 C ATOM 499 O GLN 66 24.809 63.638 18.056 1.00 99.90 O ATOM 500 CB GLN 66 23.613 63.805 20.963 1.00 99.90 C ATOM 501 CG GLN 66 24.740 63.308 21.869 1.00 99.90 C ATOM 502 CD GLN 66 24.270 62.021 22.531 1.00 99.90 C ATOM 503 OE1 GLN 66 24.972 61.443 23.359 1.00 99.90 O ATOM 504 NE2 GLN 66 23.046 61.556 22.159 1.00 99.90 N ATOM 505 N GLU 67 26.383 64.417 19.474 1.00 99.90 N ATOM 506 CA GLU 67 27.411 63.645 18.852 1.00 99.90 C ATOM 507 C GLU 67 28.134 62.935 19.947 1.00 99.90 C ATOM 508 O GLU 67 28.007 63.286 21.119 1.00 99.90 O ATOM 509 CB GLU 67 28.435 64.488 18.075 1.00 99.90 C ATOM 510 CG GLU 67 27.845 65.153 16.829 1.00 99.90 C ATOM 511 CD GLU 67 28.919 65.179 15.751 1.00 99.90 C ATOM 512 OE1 GLU 67 29.916 65.930 15.925 1.00 99.90 O ATOM 513 OE2 GLU 67 28.753 64.451 14.736 1.00 99.90 O ATOM 514 N VAL 68 28.903 61.894 19.584 1.00 99.90 N ATOM 515 CA VAL 68 29.661 61.178 20.566 1.00 99.90 C ATOM 516 C VAL 68 31.103 61.401 20.256 1.00 99.90 C ATOM 517 O VAL 68 31.935 61.460 21.161 1.00 99.90 O ATOM 518 CB VAL 68 29.438 59.697 20.524 1.00 99.90 C ATOM 519 CG1 VAL 68 29.812 59.190 19.124 1.00 99.90 C ATOM 520 CG2 VAL 68 30.255 59.048 21.656 1.00 99.90 C ATOM 521 N GLY 69 31.430 61.526 18.953 1.00 99.90 N ATOM 522 CA GLY 69 32.799 61.487 18.529 1.00 99.90 C ATOM 523 C GLY 69 33.529 62.580 19.233 1.00 99.90 C ATOM 524 O GLY 69 34.676 62.425 19.645 1.00 99.90 O ATOM 525 N PRO 70 32.866 63.686 19.385 1.00 99.90 N ATOM 526 CA PRO 70 33.287 64.613 20.388 1.00 99.90 C ATOM 527 C PRO 70 32.747 64.148 21.698 1.00 99.90 C ATOM 528 O PRO 70 31.530 64.026 21.822 1.00 99.90 O ATOM 529 CB PRO 70 32.753 65.993 19.998 1.00 99.90 C ATOM 530 CG PRO 70 32.109 65.825 18.606 1.00 99.90 C ATOM 531 CD PRO 70 32.281 64.342 18.230 1.00 99.90 C ATOM 532 N PRO 71 33.588 63.901 22.660 1.00 99.90 N ATOM 533 CA PRO 71 33.118 63.938 24.010 1.00 99.90 C ATOM 534 C PRO 71 32.989 65.376 24.370 1.00 99.90 C ATOM 535 O PRO 71 32.437 65.685 25.425 1.00 99.90 O ATOM 536 CB PRO 71 34.156 63.206 24.862 1.00 99.90 C ATOM 537 CG PRO 71 35.082 62.471 23.871 1.00 99.90 C ATOM 538 CD PRO 71 34.648 62.930 22.467 1.00 99.90 C ATOM 539 N ASP 72 33.501 66.265 23.500 1.00 99.90 N ATOM 540 CA ASP 72 33.513 67.664 23.789 1.00 99.90 C ATOM 541 C ASP 72 32.104 68.145 23.717 1.00 99.90 C ATOM 542 O ASP 72 31.250 67.732 24.500 1.00 99.90 O ATOM 543 CB ASP 72 34.333 68.480 22.775 1.00 99.90 C ATOM 544 CG ASP 72 35.761 67.951 22.783 1.00 99.90 C ATOM 545 OD1 ASP 72 36.055 67.055 23.618 1.00 99.90 O ATOM 546 OD2 ASP 72 36.577 68.438 21.955 1.00 99.90 O ATOM 547 N CYS 73 31.832 69.053 22.763 1.00 99.90 N ATOM 548 CA CYS 73 30.569 69.722 22.755 1.00 99.90 C ATOM 549 C CYS 73 29.542 68.735 22.318 1.00 99.90 C ATOM 550 O CYS 73 29.754 67.978 21.372 1.00 99.90 O ATOM 551 CB CYS 73 30.512 70.909 21.779 1.00 99.90 C ATOM 552 SG CYS 73 28.831 71.227 21.167 1.00 99.90 S ATOM 553 N ARG 74 28.389 68.722 23.013 1.00 99.90 N ATOM 554 CA ARG 74 27.222 68.126 22.439 1.00 99.90 C ATOM 555 C ARG 74 26.351 69.250 21.995 1.00 99.90 C ATOM 556 O ARG 74 26.446 70.363 22.508 1.00 99.90 O ATOM 557 CB ARG 74 26.414 67.272 23.429 1.00 99.90 C ATOM 558 CG ARG 74 27.165 66.031 23.912 1.00 99.90 C ATOM 559 CD ARG 74 26.345 65.146 24.853 1.00 99.90 C ATOM 560 NE ARG 74 24.934 65.174 24.376 1.00 99.90 N ATOM 561 CZ ARG 74 23.997 64.379 24.973 1.00 99.90 C ATOM 562 NH1 ARG 74 24.352 63.558 26.004 1.00 99.90 H ATOM 563 NH2 ARG 74 22.705 64.408 24.536 1.00 99.90 H ATOM 564 N CYS 75 25.489 68.990 20.995 1.00 99.90 N ATOM 565 CA CYS 75 24.887 70.086 20.302 1.00 99.90 C ATOM 566 C CYS 75 23.409 69.925 20.385 1.00 99.90 C ATOM 567 O CYS 75 22.657 70.815 19.989 1.00 99.90 O ATOM 568 CB CYS 75 25.271 70.122 18.816 1.00 99.90 C ATOM 569 SG CYS 75 27.063 70.334 18.600 1.00 99.90 S ATOM 570 N ASP 76 22.946 68.779 20.917 1.00 99.90 N ATOM 571 CA ASP 76 21.545 68.491 20.867 1.00 99.90 C ATOM 572 C ASP 76 20.841 69.462 21.758 1.00 99.90 C ATOM 573 O ASP 76 21.403 70.474 22.173 1.00 99.90 O ATOM 574 CB ASP 76 21.189 67.072 21.342 1.00 99.90 C ATOM 575 CG ASP 76 21.690 66.913 22.770 1.00 99.90 C ATOM 576 OD1 ASP 76 22.924 67.047 22.983 1.00 99.90 O ATOM 577 OD2 ASP 76 20.846 66.652 23.667 1.00 99.90 O ATOM 578 N ASN 77 19.563 69.174 22.061 1.00 99.90 N ATOM 579 CA ASN 77 18.769 70.104 22.806 1.00 99.90 C ATOM 580 C ASN 77 19.112 69.917 24.245 1.00 99.90 C ATOM 581 O ASN 77 19.453 70.870 24.943 1.00 99.90 O ATOM 582 CB ASN 77 17.258 69.862 22.650 1.00 99.90 C ATOM 583 CG ASN 77 16.859 70.282 21.242 1.00 99.90 C ATOM 584 OD1 ASN 77 17.298 69.696 20.254 1.00 99.90 O ATOM 585 ND2 ASN 77 15.997 71.330 21.146 1.00 99.90 N ATOM 586 N LEU 78 19.037 68.661 24.722 1.00 99.90 N ATOM 587 CA LEU 78 19.185 68.393 26.122 1.00 99.90 C ATOM 588 C LEU 78 20.636 68.495 26.465 1.00 99.90 C ATOM 589 O LEU 78 21.045 68.145 27.570 1.00 99.90 O ATOM 590 CB LEU 78 18.723 66.979 26.515 1.00 99.90 C ATOM 591 CG LEU 78 17.214 66.740 26.313 1.00 99.90 C ATOM 592 CD1 LEU 78 16.378 67.612 27.262 1.00 99.90 C ATOM 593 CD2 LEU 78 16.812 66.901 24.838 1.00 99.90 C ATOM 594 N CYS 79 21.452 68.992 25.515 1.00 99.90 N ATOM 595 CA CYS 79 22.852 69.168 25.756 1.00 99.90 C ATOM 596 C CYS 79 22.992 69.987 26.993 1.00 99.90 C ATOM 597 O CYS 79 23.885 69.753 27.805 1.00 99.90 O ATOM 598 CB CYS 79 23.557 69.928 24.621 1.00 99.90 C ATOM 599 SG CYS 79 22.863 71.591 24.377 1.00 99.90 S ATOM 600 N LYS 80 22.094 70.974 27.162 1.00 99.90 N ATOM 601 CA LYS 80 22.219 71.901 28.246 1.00 99.90 C ATOM 602 C LYS 80 22.232 71.118 29.517 1.00 99.90 C ATOM 603 O LYS 80 23.080 71.336 30.382 1.00 99.90 O ATOM 604 CB LYS 80 21.050 72.898 28.317 1.00 99.90 C ATOM 605 CG LYS 80 21.003 73.867 27.134 1.00 99.90 C ATOM 606 CD LYS 80 19.767 74.768 27.129 1.00 99.90 C ATOM 607 CE LYS 80 19.927 76.027 26.275 1.00 99.90 C ATOM 608 NZ LYS 80 20.827 76.987 26.949 1.00 99.90 N ATOM 609 N SER 81 21.286 70.171 29.653 1.00 99.90 N ATOM 610 CA SER 81 21.133 69.459 30.886 1.00 99.90 C ATOM 611 C SER 81 22.433 68.796 31.193 1.00 99.90 C ATOM 612 O SER 81 23.002 68.995 32.265 1.00 99.90 O ATOM 613 CB SER 81 20.056 68.365 30.815 1.00 99.90 C ATOM 614 OG SER 81 18.786 68.950 30.563 1.00 99.90 O ATOM 615 N TYR 82 22.937 67.988 30.242 1.00 99.90 N ATOM 616 CA TYR 82 24.172 67.295 30.454 1.00 99.90 C ATOM 617 C TYR 82 25.200 68.326 30.770 1.00 99.90 C ATOM 618 O TYR 82 26.169 68.059 31.480 1.00 99.90 O ATOM 619 CB TYR 82 24.654 66.530 29.209 1.00 99.90 C ATOM 620 CG TYR 82 23.689 65.425 28.945 1.00 99.90 C ATOM 621 CD1 TYR 82 22.513 65.672 28.276 1.00 99.90 C ATOM 622 CD2 TYR 82 23.959 64.142 29.362 1.00 99.90 C ATOM 623 CE1 TYR 82 21.618 64.657 28.028 1.00 99.90 C ATOM 624 CE2 TYR 82 23.069 63.123 29.117 1.00 99.90 C ATOM 625 CZ TYR 82 21.895 63.379 28.448 1.00 99.90 C ATOM 626 OH TYR 82 20.979 62.335 28.194 1.00 99.90 H ATOM 627 N SER 83 24.999 69.550 30.250 1.00 99.90 N ATOM 628 CA SER 83 25.981 70.576 30.420 1.00 99.90 C ATOM 629 C SER 83 27.190 70.174 29.646 1.00 99.90 C ATOM 630 O SER 83 28.257 70.773 29.780 1.00 99.90 O ATOM 631 CB SER 83 26.391 70.778 31.889 1.00 99.90 C ATOM 632 OG SER 83 25.266 71.179 32.658 1.00 99.90 O ATOM 633 N SER 84 27.045 69.143 28.794 1.00 99.90 N ATOM 634 CA SER 84 28.143 68.707 27.989 1.00 99.90 C ATOM 635 C SER 84 28.294 69.700 26.889 1.00 99.90 C ATOM 636 O SER 84 29.372 69.841 26.312 1.00 99.90 O ATOM 637 CB SER 84 27.901 67.336 27.337 1.00 99.90 C ATOM 638 OG SER 84 26.785 67.402 26.462 1.00 99.90 O ATOM 639 N CYS 85 27.198 70.419 26.579 1.00 99.90 N ATOM 640 CA CYS 85 27.157 71.238 25.404 1.00 99.90 C ATOM 641 C CYS 85 28.283 72.215 25.484 1.00 99.90 C ATOM 642 O CYS 85 28.928 72.356 26.522 1.00 99.90 O ATOM 643 CB CYS 85 25.845 72.029 25.261 1.00 99.90 C ATOM 644 SG CYS 85 25.698 72.881 23.662 1.00 99.90 S ATOM 645 N CYS 86 28.563 72.898 24.357 1.00 99.90 N ATOM 646 CA CYS 86 29.752 73.690 24.273 1.00 99.90 C ATOM 647 C CYS 86 29.382 75.102 24.581 1.00 99.90 C ATOM 648 O CYS 86 28.516 75.365 25.414 1.00 99.90 O ATOM 649 CB CYS 86 30.398 73.670 22.877 1.00 99.90 C ATOM 650 SG CYS 86 32.186 73.994 22.933 1.00 99.90 S ATOM 651 N HIS 87 30.056 76.056 23.911 1.00 99.90 N ATOM 652 CA HIS 87 29.896 77.438 24.251 1.00 99.90 C ATOM 653 C HIS 87 29.095 78.074 23.165 1.00 99.90 C ATOM 654 O HIS 87 28.059 78.687 23.417 1.00 99.90 O ATOM 655 CB HIS 87 31.235 78.190 24.335 1.00 99.90 C ATOM 656 CG HIS 87 32.099 77.716 25.467 1.00 99.90 C ATOM 657 ND1 HIS 87 33.084 76.761 25.340 1.00 99.90 N ATOM 658 CD2 HIS 87 32.107 78.085 26.777 1.00 99.90 C ATOM 659 CE1 HIS 87 33.636 76.603 26.570 1.00 99.90 C ATOM 660 NE2 HIS 87 33.075 77.383 27.475 1.00 99.90 N ATOM 661 N ASP 88 29.562 77.929 21.910 1.00 99.90 N ATOM 662 CA ASP 88 29.017 78.684 20.820 1.00 99.90 C ATOM 663 C ASP 88 27.663 78.136 20.499 1.00 99.90 C ATOM 664 O ASP 88 27.007 78.590 19.562 1.00 99.90 O ATOM 665 CB ASP 88 29.870 78.585 19.545 1.00 99.90 C ATOM 666 CG ASP 88 31.308 78.924 19.918 1.00 99.90 C ATOM 667 OD1 ASP 88 31.552 80.086 20.336 1.00 99.90 O ATOM 668 OD2 ASP 88 32.179 78.023 19.789 1.00 99.90 O ATOM 669 N PHE 89 27.210 77.145 21.287 1.00 99.90 N ATOM 670 CA PHE 89 25.918 76.558 21.095 1.00 99.90 C ATOM 671 C PHE 89 24.912 77.661 21.067 1.00 99.90 C ATOM 672 O PHE 89 24.333 77.956 20.023 1.00 99.90 O ATOM 673 CB PHE 89 25.534 75.599 22.235 1.00 99.90 C ATOM 674 CG PHE 89 24.131 75.153 22.009 1.00 99.90 C ATOM 675 CD1 PHE 89 23.868 74.023 21.269 1.00 99.90 C ATOM 676 CD2 PHE 89 23.078 75.861 22.542 1.00 99.90 C ATOM 677 CE1 PHE 89 22.573 73.608 21.061 1.00 99.90 C ATOM 678 CE2 PHE 89 21.782 75.451 22.336 1.00 99.90 C ATOM 679 CZ PHE 89 21.527 74.322 21.593 1.00 99.90 C ATOM 680 N ASP 90 24.684 78.299 22.230 1.00 99.90 N ATOM 681 CA ASP 90 23.561 79.177 22.384 1.00 99.90 C ATOM 682 C ASP 90 23.671 80.256 21.360 1.00 99.90 C ATOM 683 O ASP 90 22.668 80.671 20.779 1.00 99.90 O ATOM 684 CB ASP 90 23.519 79.852 23.762 1.00 99.90 C ATOM 685 CG ASP 90 23.241 78.779 24.801 1.00 99.90 C ATOM 686 OD1 ASP 90 24.063 77.831 24.912 1.00 99.90 O ATOM 687 OD2 ASP 90 22.199 78.892 25.500 1.00 99.90 O ATOM 688 N GLU 91 24.905 80.731 21.113 1.00 99.90 N ATOM 689 CA GLU 91 25.109 81.811 20.194 1.00 99.90 C ATOM 690 C GLU 91 24.506 81.413 18.889 1.00 99.90 C ATOM 691 O GLU 91 23.660 82.122 18.347 1.00 99.90 O ATOM 692 CB GLU 91 26.595 82.121 19.947 1.00 99.90 C ATOM 693 CG GLU 91 27.319 82.676 21.176 1.00 99.90 C ATOM 694 CD GLU 91 28.586 83.373 20.700 1.00 99.90 C ATOM 695 OE1 GLU 91 28.675 84.618 20.868 1.00 99.90 O ATOM 696 OE2 GLU 91 29.481 82.668 20.162 1.00 99.90 O ATOM 697 N LEU 92 24.926 80.251 18.356 1.00 99.90 N ATOM 698 CA LEU 92 24.360 79.759 17.136 1.00 99.90 C ATOM 699 C LEU 92 22.945 79.385 17.422 1.00 99.90 C ATOM 700 O LEU 92 22.097 80.239 17.674 1.00 99.90 O ATOM 701 CB LEU 92 25.058 78.492 16.607 1.00 99.90 C ATOM 702 CG LEU 92 26.441 78.757 15.985 1.00 99.90 C ATOM 703 CD1 LEU 92 26.319 79.488 14.640 1.00 99.90 C ATOM 704 CD2 LEU 92 27.371 79.471 16.979 1.00 99.90 C ATOM 705 N CYS 93 22.656 78.072 17.379 1.00 99.90 N ATOM 706 CA CYS 93 21.301 77.632 17.488 1.00 99.90 C ATOM 707 C CYS 93 20.784 78.107 18.803 1.00 99.90 C ATOM 708 O CYS 93 21.134 77.569 19.853 1.00 99.90 O ATOM 709 CB CYS 93 21.155 76.103 17.451 1.00 99.90 C ATOM 710 SG CYS 93 22.400 75.268 18.477 1.00 99.90 S ATOM 711 N LEU 94 19.934 79.149 18.769 1.00 99.90 N ATOM 712 CA LEU 94 19.255 79.573 19.956 1.00 99.90 C ATOM 713 C LEU 94 17.815 79.268 19.739 1.00 99.90 C ATOM 714 O LEU 94 17.118 78.811 20.644 1.00 99.90 O ATOM 715 CB LEU 94 19.352 81.087 20.200 1.00 99.90 C ATOM 716 CG LEU 94 18.389 81.592 21.290 1.00 99.90 C ATOM 717 CD1 LEU 94 18.734 80.999 22.665 1.00 99.90 C ATOM 718 CD2 LEU 94 18.314 83.127 21.303 1.00 99.90 C ATOM 719 N LYS 95 17.339 79.516 18.505 1.00 99.90 N ATOM 720 CA LYS 95 15.972 79.258 18.173 1.00 99.90 C ATOM 721 C LYS 95 15.740 77.798 18.365 1.00 99.90 C ATOM 722 O LYS 95 14.609 77.354 18.553 1.00 99.90 O ATOM 723 CB LYS 95 15.651 79.601 16.709 1.00 99.90 C ATOM 724 CG LYS 95 16.104 81.005 16.303 1.00 99.90 C ATOM 725 CD LYS 95 14.969 82.030 16.284 1.00 99.90 C ATOM 726 CE LYS 95 13.791 81.616 15.400 1.00 99.90 C ATOM 727 NZ LYS 95 12.613 82.453 15.713 1.00 99.90 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 61.04 56.4 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 60.28 57.1 56 100.0 56 ARMSMC BURIED . . . . . . . . 62.93 54.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.62 58.3 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 71.28 60.0 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 70.81 60.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 79.65 54.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.15 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 50.52 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 74.80 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 35.02 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.65 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 64.07 50.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 82.83 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 19.87 100.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.08 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 67.08 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 74.99 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 1.33 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.03 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.03 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0508 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.26 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.23 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.19 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.39 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.54 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.13 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 3.84 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.62 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.47 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.20 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.56 219 100.0 219 CRMSALL BURIED . . . . . . . . 1.98 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.310 0.969 0.970 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 98.124 0.965 0.966 29 100.0 29 ERRCA BURIED . . . . . . . . 98.801 0.978 0.979 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.193 0.967 0.968 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 98.030 0.964 0.965 142 100.0 142 ERRMC BURIED . . . . . . . . 98.612 0.975 0.975 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 96.722 0.940 0.942 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 97.003 0.945 0.947 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 96.239 0.931 0.934 103 100.0 103 ERRSC BURIED . . . . . . . . 97.966 0.962 0.964 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.549 0.955 0.957 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 97.244 0.949 0.951 219 100.0 219 ERRALL BURIED . . . . . . . . 98.344 0.970 0.970 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 18 31 34 39 40 40 40 DISTCA CA (P) 45.00 77.50 85.00 97.50 100.00 40 DISTCA CA (RMS) 0.75 1.09 1.25 1.86 2.03 DISTCA ALL (N) 84 193 228 268 299 303 303 DISTALL ALL (P) 27.72 63.70 75.25 88.45 98.68 303 DISTALL ALL (RMS) 0.75 1.20 1.46 2.03 2.96 DISTALL END of the results output