####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS236_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS236_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 68 - 89 4.81 10.64 LCS_AVERAGE: 51.25 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 74 - 87 1.90 10.45 LONGEST_CONTINUOUS_SEGMENT: 14 75 - 88 1.67 10.02 LCS_AVERAGE: 23.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 77 - 87 0.97 10.44 LCS_AVERAGE: 16.69 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 6 19 1 3 5 5 5 14 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT S 57 S 57 3 6 19 3 3 5 6 6 7 12 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT C 58 C 58 5 6 19 3 5 9 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT K 59 K 59 5 6 19 3 5 6 6 6 7 9 11 19 21 22 24 25 27 28 29 31 33 33 35 LCS_GDT G 60 G 60 5 6 19 5 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT R 61 R 61 5 6 19 3 5 6 6 13 14 17 17 18 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT C 62 C 62 5 6 19 3 5 6 6 7 11 13 14 15 21 21 25 26 27 28 30 31 33 33 35 LCS_GDT F 63 F 63 3 6 19 3 3 3 6 7 9 10 11 14 21 21 22 25 27 28 30 31 33 33 35 LCS_GDT E 64 E 64 4 6 19 3 4 5 5 7 9 10 11 17 21 21 22 25 27 28 30 31 33 33 35 LCS_GDT L 65 L 65 4 6 19 4 4 5 9 12 13 15 17 18 21 21 22 25 27 28 29 31 33 33 35 LCS_GDT Q 66 Q 66 4 6 19 4 10 12 14 15 16 17 18 18 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT E 67 E 67 4 6 19 4 4 5 6 7 9 10 11 13 20 22 25 26 27 28 30 31 33 33 35 LCS_GDT V 68 V 68 4 6 22 4 4 5 5 6 9 10 11 13 21 21 25 26 27 28 30 31 33 33 35 LCS_GDT G 69 G 69 4 5 22 0 3 4 4 8 10 12 15 17 21 22 24 26 27 28 30 31 33 33 35 LCS_GDT P 70 P 70 4 5 22 3 3 4 4 5 6 11 12 14 17 19 21 24 26 26 28 31 32 33 35 LCS_GDT P 71 P 71 4 5 22 3 3 4 4 5 6 7 9 12 17 19 20 24 26 26 28 31 31 31 33 LCS_GDT D 72 D 72 3 4 22 3 3 4 8 10 11 11 12 14 17 19 21 24 26 26 28 31 31 31 33 LCS_GDT C 73 C 73 3 4 22 3 3 4 6 7 9 10 11 14 17 19 21 24 26 26 28 31 31 32 35 LCS_GDT R 74 R 74 3 14 22 3 3 4 6 9 12 14 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT C 75 C 75 3 14 22 3 3 11 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT D 76 D 76 4 14 22 4 4 5 10 13 13 16 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT N 77 N 77 11 14 22 4 4 11 13 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT L 78 L 78 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT C 79 C 79 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT K 80 K 80 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT S 81 S 81 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT Y 82 Y 82 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT S 83 S 83 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT S 84 S 84 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT C 85 C 85 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT C 86 C 86 11 14 22 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 LCS_GDT H 87 H 87 11 14 22 3 10 12 14 15 16 17 18 19 21 22 23 25 27 28 30 31 33 33 35 LCS_GDT D 88 D 88 8 14 22 3 8 8 12 15 16 17 18 19 21 22 25 25 27 28 30 31 33 33 35 LCS_GDT F 89 F 89 8 9 22 4 8 8 9 10 11 11 13 16 20 22 25 26 27 28 30 31 33 33 35 LCS_GDT D 90 D 90 8 9 19 4 8 8 9 10 11 11 12 14 17 19 21 24 26 28 30 31 33 33 35 LCS_GDT E 91 E 91 8 9 19 4 8 8 9 10 11 11 14 16 19 22 25 26 27 28 30 31 33 33 35 LCS_GDT L 92 L 92 8 9 19 4 8 8 9 10 11 11 12 14 17 19 21 26 27 28 30 31 33 33 35 LCS_GDT C 93 C 93 8 9 17 4 8 8 9 10 11 11 12 14 17 19 21 24 26 26 30 31 32 33 35 LCS_GDT L 94 L 94 8 9 17 4 8 8 9 10 11 11 12 14 15 17 20 24 26 26 28 29 29 33 35 LCS_GDT K 95 K 95 8 9 17 4 8 8 9 10 11 11 12 14 15 17 20 24 26 26 28 31 31 33 35 LCS_AVERAGE LCS_A: 30.44 ( 16.69 23.38 51.25 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 10 12 14 15 16 17 18 19 21 22 25 26 27 28 30 31 33 33 35 GDT PERCENT_AT 22.50 25.00 30.00 35.00 37.50 40.00 42.50 45.00 47.50 52.50 55.00 62.50 65.00 67.50 70.00 75.00 77.50 82.50 82.50 87.50 GDT RMS_LOCAL 0.30 0.64 0.76 1.04 1.32 1.53 1.84 2.10 2.52 3.25 3.02 4.26 4.65 4.22 4.40 5.20 5.40 5.64 5.64 6.33 GDT RMS_ALL_AT 10.39 10.41 10.33 10.31 10.19 9.96 9.85 9.79 9.65 8.97 9.66 8.38 7.94 9.52 9.52 8.15 7.99 8.19 8.19 7.72 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # possible swapping detected: F 89 F 89 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 4.157 0 0.370 0.370 6.089 30.714 30.714 LGA S 57 S 57 6.374 0 0.317 0.776 10.447 24.048 16.270 LGA C 58 C 58 1.820 0 0.608 0.699 3.652 57.500 56.349 LGA K 59 K 59 5.404 0 0.614 0.971 10.541 35.952 17.989 LGA G 60 G 60 0.537 0 0.047 0.047 3.841 65.833 65.833 LGA R 61 R 61 5.225 0 0.340 1.611 10.381 23.571 17.576 LGA C 62 C 62 9.139 0 0.312 0.339 10.393 3.929 2.619 LGA F 63 F 63 10.477 0 0.375 1.125 19.769 0.476 0.173 LGA E 64 E 64 9.308 0 0.262 0.541 13.161 0.595 0.317 LGA L 65 L 65 8.586 0 0.340 0.540 13.875 7.738 4.048 LGA Q 66 Q 66 2.502 0 0.023 1.103 7.225 45.357 38.042 LGA E 67 E 67 6.632 0 0.578 1.528 10.713 15.595 8.148 LGA V 68 V 68 10.148 0 0.573 0.621 13.897 1.190 0.680 LGA G 69 G 69 11.744 0 0.335 0.335 12.534 0.000 0.000 LGA P 70 P 70 16.609 0 0.073 0.235 18.640 0.000 0.000 LGA P 71 P 71 17.081 0 0.304 0.484 21.157 0.000 0.000 LGA D 72 D 72 15.742 3 0.618 0.613 16.937 0.000 0.000 LGA C 73 C 73 13.068 0 0.615 1.036 16.507 0.000 0.000 LGA R 74 R 74 5.862 0 0.585 1.270 12.818 24.643 13.463 LGA C 75 C 75 1.579 0 0.309 0.819 3.292 59.405 58.730 LGA D 76 D 76 4.453 0 0.462 0.789 9.233 48.571 27.857 LGA N 77 N 77 2.022 0 0.133 0.919 4.339 69.048 64.524 LGA L 78 L 78 1.716 0 0.268 1.292 7.526 79.405 56.190 LGA C 79 C 79 0.880 0 0.029 0.764 2.922 88.214 83.413 LGA K 80 K 80 0.849 0 0.051 0.915 6.783 85.952 64.550 LGA S 81 S 81 1.576 0 0.036 0.052 1.801 75.000 74.286 LGA Y 82 Y 82 1.353 0 0.166 0.614 2.475 79.286 76.508 LGA S 83 S 83 0.972 0 0.183 0.687 3.812 90.595 81.190 LGA S 84 S 84 0.606 0 0.256 0.628 2.878 92.857 86.508 LGA C 85 C 85 1.021 0 0.061 0.724 3.110 83.690 79.206 LGA C 86 C 86 1.256 0 0.120 0.152 2.304 79.286 77.222 LGA H 87 H 87 2.361 0 0.118 1.154 5.743 66.905 46.048 LGA D 88 D 88 2.817 0 0.550 0.906 6.733 42.381 36.786 LGA F 89 F 89 8.146 0 0.065 1.447 14.329 5.476 2.121 LGA D 90 D 90 14.283 0 0.047 1.108 16.517 0.000 0.000 LGA E 91 E 91 12.836 0 0.213 1.143 16.031 0.000 1.905 LGA L 92 L 92 13.598 0 0.198 1.455 17.570 0.000 0.000 LGA C 93 C 93 17.018 0 0.000 0.100 21.724 0.000 0.000 LGA L 94 L 94 22.175 0 0.041 0.630 25.022 0.000 0.000 LGA K 95 K 95 24.366 0 0.130 1.250 28.399 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 7.476 7.376 8.828 34.580 29.732 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 18 2.10 45.000 39.912 0.816 LGA_LOCAL RMSD: 2.105 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.786 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.476 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.351584 * X + -0.935239 * Y + -0.041427 * Z + -94.709877 Y_new = -0.624452 * X + 0.267259 * Y + -0.733916 * Z + -33.037231 Z_new = 0.697459 * X + -0.232163 * Y + -0.677976 * Z + -12.555120 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.083586 -0.771845 -2.811672 [DEG: -119.3807 -44.2235 -161.0969 ] ZXZ: -0.056387 2.315802 1.892130 [DEG: -3.2307 132.6857 108.4111 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS236_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS236_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 18 2.10 39.912 7.48 REMARK ---------------------------------------------------------- MOLECULE T0543TS236_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 31.041 69.912 21.855 1.00 30.00 N ATOM 423 CA GLY 56 31.692 70.050 20.575 1.00 30.00 C ATOM 424 C GLY 56 30.731 70.225 19.491 1.00 30.00 C ATOM 425 O GLY 56 30.882 71.126 18.674 1.00 30.00 O ATOM 426 N SER 57 29.718 69.344 19.445 1.00 30.00 N ATOM 427 CA SER 57 28.862 69.169 18.297 1.00 30.00 C ATOM 428 C SER 57 27.918 70.309 18.013 1.00 30.00 C ATOM 429 O SER 57 26.701 70.201 18.164 1.00 30.00 O ATOM 430 CB SER 57 28.054 67.849 18.424 1.00 30.00 C ATOM 431 OG SER 57 27.378 67.758 19.677 1.00 30.00 O ATOM 432 N CYS 58 28.491 71.420 17.510 1.00 30.00 N ATOM 433 CA CYS 58 27.760 72.471 16.865 1.00 30.00 C ATOM 434 C CYS 58 27.322 71.974 15.491 1.00 30.00 C ATOM 435 O CYS 58 28.114 71.427 14.719 1.00 30.00 O ATOM 436 CB CYS 58 28.591 73.770 16.770 1.00 30.00 C ATOM 437 SG CYS 58 27.583 75.221 16.310 1.00 30.00 S ATOM 438 N LYS 59 26.009 72.128 15.192 1.00 30.00 N ATOM 439 CA LYS 59 25.288 71.507 14.090 1.00 30.00 C ATOM 440 C LYS 59 25.908 71.672 12.730 1.00 30.00 C ATOM 441 O LYS 59 25.949 70.731 11.937 1.00 30.00 O ATOM 442 CB LYS 59 23.825 72.030 14.096 1.00 30.00 C ATOM 443 CG LYS 59 23.634 73.555 13.972 1.00 30.00 C ATOM 444 CD LYS 59 22.187 73.990 14.253 1.00 30.00 C ATOM 445 CE LYS 59 21.952 75.502 14.191 1.00 30.00 C ATOM 446 NZ LYS 59 22.042 75.982 12.797 1.00 30.00 N ATOM 447 N GLY 60 26.432 72.882 12.453 1.00 30.00 N ATOM 448 CA GLY 60 27.013 73.203 11.173 1.00 30.00 C ATOM 449 C GLY 60 28.492 72.997 11.097 1.00 30.00 C ATOM 450 O GLY 60 29.104 73.266 10.065 1.00 30.00 O ATOM 451 N ARG 61 29.096 72.528 12.204 1.00 30.00 N ATOM 452 CA ARG 61 30.520 72.315 12.320 1.00 30.00 C ATOM 453 C ARG 61 30.788 70.833 12.223 1.00 30.00 C ATOM 454 O ARG 61 31.514 70.366 11.346 1.00 30.00 O ATOM 455 CB ARG 61 31.082 72.837 13.674 1.00 30.00 C ATOM 456 CG ARG 61 31.337 74.356 13.808 1.00 30.00 C ATOM 457 CD ARG 61 30.163 75.298 13.520 1.00 30.00 C ATOM 458 NE ARG 61 30.587 76.680 13.923 1.00 30.00 N ATOM 459 CZ ARG 61 29.752 77.759 13.853 1.00 30.00 C ATOM 460 NH1 ARG 61 28.469 77.606 13.422 1.00 30.00 H ATOM 461 NH2 ARG 61 30.220 78.992 14.202 1.00 30.00 H ATOM 462 N CYS 62 30.199 70.060 13.152 1.00 30.00 N ATOM 463 CA CYS 62 30.512 68.666 13.356 1.00 30.00 C ATOM 464 C CYS 62 29.448 67.833 12.679 1.00 30.00 C ATOM 465 O CYS 62 28.740 67.059 13.322 1.00 30.00 O ATOM 466 CB CYS 62 30.522 68.358 14.865 1.00 30.00 C ATOM 467 SG CYS 62 31.554 69.548 15.779 1.00 30.00 S ATOM 468 N PHE 63 29.315 68.000 11.349 1.00 30.00 N ATOM 469 CA PHE 63 28.248 67.430 10.556 1.00 30.00 C ATOM 470 C PHE 63 28.261 65.914 10.554 1.00 30.00 C ATOM 471 O PHE 63 27.246 65.273 10.837 1.00 30.00 O ATOM 472 CB PHE 63 28.291 68.008 9.094 1.00 30.00 C ATOM 473 CG PHE 63 29.586 67.785 8.324 1.00 30.00 C ATOM 474 CD1 PHE 63 29.687 66.745 7.379 1.00 30.00 C ATOM 475 CD2 PHE 63 30.705 68.616 8.519 1.00 30.00 C ATOM 476 CE1 PHE 63 30.889 66.498 6.703 1.00 30.00 C ATOM 477 CE2 PHE 63 31.909 68.375 7.845 1.00 30.00 C ATOM 478 CZ PHE 63 32.003 67.310 6.942 1.00 30.00 C ATOM 479 N GLU 64 29.432 65.305 10.267 1.00 30.00 N ATOM 480 CA GLU 64 29.564 63.876 10.265 1.00 30.00 C ATOM 481 C GLU 64 30.039 63.398 11.610 1.00 30.00 C ATOM 482 O GLU 64 31.237 63.271 11.855 1.00 30.00 O ATOM 483 CB GLU 64 30.494 63.372 9.140 1.00 30.00 C ATOM 484 CG GLU 64 30.424 61.834 9.000 1.00 30.00 C ATOM 485 CD GLU 64 31.026 61.339 7.690 1.00 30.00 C ATOM 486 OE1 GLU 64 32.261 61.502 7.511 1.00 30.00 O ATOM 487 OE2 GLU 64 30.250 60.770 6.878 1.00 30.00 O ATOM 488 N LEU 65 29.082 63.138 12.530 1.00 30.00 N ATOM 489 CA LEU 65 29.452 62.693 13.852 1.00 30.00 C ATOM 490 C LEU 65 28.530 61.651 14.421 1.00 30.00 C ATOM 491 O LEU 65 28.691 60.459 14.153 1.00 30.00 O ATOM 492 CB LEU 65 29.648 63.917 14.804 1.00 30.00 C ATOM 493 CG LEU 65 30.350 63.623 16.155 1.00 30.00 C ATOM 494 CD1 LEU 65 30.261 64.850 17.073 1.00 30.00 C ATOM 495 CD2 LEU 65 31.814 63.177 15.989 1.00 30.00 C ATOM 496 N GLN 66 27.552 62.058 15.256 1.00 30.00 N ATOM 497 CA GLN 66 26.740 61.122 15.988 1.00 30.00 C ATOM 498 C GLN 66 25.659 60.563 15.089 1.00 30.00 C ATOM 499 O GLN 66 25.177 61.244 14.182 1.00 30.00 O ATOM 500 CB GLN 66 26.047 61.775 17.215 1.00 30.00 C ATOM 501 CG GLN 66 27.015 62.371 18.263 1.00 30.00 C ATOM 502 CD GLN 66 26.222 63.040 19.395 1.00 30.00 C ATOM 503 OE1 GLN 66 25.101 62.643 19.721 1.00 30.00 O ATOM 504 NE2 GLN 66 26.823 64.088 20.018 1.00 30.00 N ATOM 505 N GLU 67 25.262 59.284 15.310 1.00 30.00 N ATOM 506 CA GLU 67 24.398 58.617 14.360 1.00 30.00 C ATOM 507 C GLU 67 22.932 58.959 14.509 1.00 30.00 C ATOM 508 O GLU 67 22.284 59.355 13.543 1.00 30.00 O ATOM 509 CB GLU 67 24.598 57.079 14.374 1.00 30.00 C ATOM 510 CG GLU 67 24.097 56.382 13.077 1.00 30.00 C ATOM 511 CD GLU 67 24.818 56.882 11.817 1.00 30.00 C ATOM 512 OE1 GLU 67 26.079 56.854 11.814 1.00 30.00 O ATOM 513 OE2 GLU 67 24.118 57.331 10.873 1.00 30.00 O ATOM 514 N VAL 68 22.371 58.794 15.728 1.00 30.00 N ATOM 515 CA VAL 68 20.953 59.001 15.974 1.00 30.00 C ATOM 516 C VAL 68 20.635 60.440 16.169 1.00 30.00 C ATOM 517 O VAL 68 19.655 60.930 15.613 1.00 30.00 O ATOM 518 CB VAL 68 20.466 58.170 17.165 1.00 30.00 C ATOM 519 CG1 VAL 68 18.944 58.336 17.367 1.00 30.00 C ATOM 520 CG2 VAL 68 20.795 56.680 16.920 1.00 30.00 C ATOM 521 N GLY 69 21.469 61.129 16.979 1.00 30.00 N ATOM 522 CA GLY 69 21.272 62.497 17.399 1.00 30.00 C ATOM 523 C GLY 69 21.112 63.471 16.279 1.00 30.00 C ATOM 524 O GLY 69 22.083 63.657 15.543 1.00 30.00 O ATOM 525 N PRO 70 19.953 64.124 16.099 1.00 30.00 N ATOM 526 CA PRO 70 19.781 65.049 14.997 1.00 30.00 C ATOM 527 C PRO 70 20.640 66.261 15.191 1.00 30.00 C ATOM 528 O PRO 70 20.894 66.565 16.359 1.00 30.00 O ATOM 529 CB PRO 70 18.283 65.412 15.026 1.00 30.00 C ATOM 530 CG PRO 70 17.623 64.190 15.666 1.00 30.00 C ATOM 531 CD PRO 70 18.665 63.745 16.692 1.00 30.00 C ATOM 532 N PRO 71 21.097 66.965 14.154 1.00 30.00 N ATOM 533 CA PRO 71 22.246 67.849 14.290 1.00 30.00 C ATOM 534 C PRO 71 21.941 69.021 15.190 1.00 30.00 C ATOM 535 O PRO 71 22.811 69.449 15.947 1.00 30.00 O ATOM 536 CB PRO 71 22.575 68.272 12.842 1.00 30.00 C ATOM 537 CG PRO 71 21.331 67.910 12.021 1.00 30.00 C ATOM 538 CD PRO 71 20.787 66.686 12.754 1.00 30.00 C ATOM 539 N ASP 72 20.691 69.516 15.159 1.00 30.00 N ATOM 540 CA ASP 72 20.232 70.539 16.059 1.00 30.00 C ATOM 541 C ASP 72 19.997 70.015 17.457 1.00 30.00 C ATOM 542 O ASP 72 20.389 70.631 18.447 1.00 30.00 O ATOM 543 CB ASP 72 18.903 71.188 15.568 1.00 30.00 C ATOM 544 CG ASP 72 18.992 71.746 14.150 1.00 30.00 C ATOM 545 OD1 ASP 72 19.084 70.924 13.200 1.00 30.00 O ATOM 546 OD2 ASP 72 18.929 72.992 14.004 1.00 30.00 O ATOM 547 N CYS 73 19.333 68.845 17.556 1.00 30.00 N ATOM 548 CA CYS 73 18.925 68.272 18.816 1.00 30.00 C ATOM 549 C CYS 73 20.078 67.811 19.673 1.00 30.00 C ATOM 550 O CYS 73 20.006 67.888 20.900 1.00 30.00 O ATOM 551 CB CYS 73 17.947 67.094 18.635 1.00 30.00 C ATOM 552 SG CYS 73 16.361 67.645 17.933 1.00 30.00 S ATOM 553 N ARG 74 21.197 67.358 19.061 1.00 30.00 N ATOM 554 CA ARG 74 22.402 67.134 19.831 1.00 30.00 C ATOM 555 C ARG 74 23.035 68.409 20.303 1.00 30.00 C ATOM 556 O ARG 74 23.416 68.504 21.468 1.00 30.00 O ATOM 557 CB ARG 74 23.421 66.229 19.077 1.00 30.00 C ATOM 558 CG ARG 74 24.031 66.724 17.752 1.00 30.00 C ATOM 559 CD ARG 74 24.866 65.613 17.097 1.00 30.00 C ATOM 560 NE ARG 74 25.468 66.103 15.809 1.00 30.00 N ATOM 561 CZ ARG 74 25.393 65.419 14.626 1.00 30.00 C ATOM 562 NH1 ARG 74 26.162 65.827 13.573 1.00 30.00 H ATOM 563 NH2 ARG 74 24.568 64.345 14.471 1.00 30.00 H ATOM 564 N CYS 75 23.072 69.432 19.428 1.00 30.00 N ATOM 565 CA CYS 75 23.623 70.721 19.733 1.00 30.00 C ATOM 566 C CYS 75 22.955 71.451 20.862 1.00 30.00 C ATOM 567 O CYS 75 23.640 72.052 21.690 1.00 30.00 O ATOM 568 CB CYS 75 23.621 71.627 18.468 1.00 30.00 C ATOM 569 SG CYS 75 24.502 73.224 18.648 1.00 30.00 S ATOM 570 N ASP 76 21.604 71.440 20.900 1.00 30.00 N ATOM 571 CA ASP 76 20.901 72.076 21.988 1.00 30.00 C ATOM 572 C ASP 76 20.386 71.115 23.025 1.00 30.00 C ATOM 573 O ASP 76 20.899 71.102 24.144 1.00 30.00 O ATOM 574 CB ASP 76 19.795 73.071 21.482 1.00 30.00 C ATOM 575 CG ASP 76 18.949 72.610 20.297 1.00 30.00 C ATOM 576 OD1 ASP 76 18.990 73.297 19.244 1.00 30.00 O ATOM 577 OD2 ASP 76 18.230 71.589 20.452 1.00 30.00 O ATOM 578 N ASN 77 19.354 70.309 22.696 1.00 30.00 N ATOM 579 CA ASN 77 18.630 69.510 23.658 1.00 30.00 C ATOM 580 C ASN 77 19.492 68.564 24.456 1.00 30.00 C ATOM 581 O ASN 77 19.505 68.595 25.688 1.00 30.00 O ATOM 582 CB ASN 77 17.491 68.658 23.014 1.00 30.00 C ATOM 583 CG ASN 77 16.506 69.462 22.159 1.00 30.00 C ATOM 584 OD1 ASN 77 16.295 69.139 20.986 1.00 30.00 O ATOM 585 ND2 ASN 77 15.867 70.500 22.756 1.00 30.00 N ATOM 586 N LEU 78 20.251 67.713 23.741 1.00 30.00 N ATOM 587 CA LEU 78 21.067 66.712 24.374 1.00 30.00 C ATOM 588 C LEU 78 22.226 67.303 25.149 1.00 30.00 C ATOM 589 O LEU 78 22.489 66.918 26.291 1.00 30.00 O ATOM 590 CB LEU 78 21.624 65.710 23.335 1.00 30.00 C ATOM 591 CG LEU 78 22.262 64.423 23.905 1.00 30.00 C ATOM 592 CD1 LEU 78 23.110 63.721 22.831 1.00 30.00 C ATOM 593 CD2 LEU 78 21.202 63.462 24.468 1.00 30.00 C ATOM 594 N CYS 79 22.929 68.287 24.538 1.00 30.00 N ATOM 595 CA CYS 79 23.995 69.020 25.179 1.00 30.00 C ATOM 596 C CYS 79 23.619 69.680 26.482 1.00 30.00 C ATOM 597 O CYS 79 24.410 69.677 27.427 1.00 30.00 O ATOM 598 CB CYS 79 24.579 70.126 24.252 1.00 30.00 C ATOM 599 SG CYS 79 25.901 69.541 23.139 1.00 30.00 S ATOM 600 N LYS 80 22.401 70.255 26.563 1.00 30.00 N ATOM 601 CA LYS 80 21.907 70.881 27.766 1.00 30.00 C ATOM 602 C LYS 80 21.736 69.916 28.904 1.00 30.00 C ATOM 603 O LYS 80 22.218 70.157 30.013 1.00 30.00 O ATOM 604 CB LYS 80 20.585 71.627 27.447 1.00 30.00 C ATOM 605 CG LYS 80 20.141 72.698 28.463 1.00 30.00 C ATOM 606 CD LYS 80 19.352 72.173 29.675 1.00 30.00 C ATOM 607 CE LYS 80 18.791 73.300 30.543 1.00 30.00 C ATOM 608 NZ LYS 80 18.040 72.728 31.677 1.00 30.00 N ATOM 609 N SER 81 21.090 68.763 28.629 1.00 30.00 N ATOM 610 CA SER 81 20.878 67.712 29.602 1.00 30.00 C ATOM 611 C SER 81 22.131 67.197 30.260 1.00 30.00 C ATOM 612 O SER 81 22.137 66.930 31.461 1.00 30.00 O ATOM 613 CB SER 81 20.150 66.489 28.989 1.00 30.00 C ATOM 614 OG SER 81 18.854 66.864 28.529 1.00 30.00 O ATOM 615 N TYR 82 23.226 67.064 29.483 1.00 30.00 N ATOM 616 CA TYR 82 24.496 66.606 30.002 1.00 30.00 C ATOM 617 C TYR 82 25.470 67.728 30.311 1.00 30.00 C ATOM 618 O TYR 82 26.684 67.519 30.302 1.00 30.00 O ATOM 619 CB TYR 82 25.206 65.651 28.996 1.00 30.00 C ATOM 620 CG TYR 82 24.409 64.423 28.625 1.00 30.00 C ATOM 621 CD1 TYR 82 23.710 63.662 29.581 1.00 30.00 C ATOM 622 CD2 TYR 82 24.431 63.975 27.293 1.00 30.00 C ATOM 623 CE1 TYR 82 23.032 62.490 29.206 1.00 30.00 C ATOM 624 CE2 TYR 82 23.767 62.799 26.920 1.00 30.00 C ATOM 625 CZ TYR 82 23.063 62.061 27.874 1.00 30.00 C ATOM 626 OH TYR 82 22.391 60.882 27.487 1.00 30.00 H ATOM 627 N SER 83 24.947 68.943 30.582 1.00 30.00 N ATOM 628 CA SER 83 25.690 70.138 30.936 1.00 30.00 C ATOM 629 C SER 83 26.902 70.492 30.103 1.00 30.00 C ATOM 630 O SER 83 27.945 70.879 30.629 1.00 30.00 O ATOM 631 CB SER 83 26.066 70.189 32.455 1.00 30.00 C ATOM 632 OG SER 83 27.004 69.190 32.851 1.00 30.00 O ATOM 633 N SER 84 26.775 70.377 28.762 1.00 30.00 N ATOM 634 CA SER 84 27.945 70.364 27.902 1.00 30.00 C ATOM 635 C SER 84 27.634 70.990 26.578 1.00 30.00 C ATOM 636 O SER 84 27.729 70.335 25.538 1.00 30.00 O ATOM 637 CB SER 84 28.418 68.905 27.644 1.00 30.00 C ATOM 638 OG SER 84 28.916 68.282 28.828 1.00 30.00 O ATOM 639 N CYS 85 27.264 72.287 26.587 1.00 30.00 N ATOM 640 CA CYS 85 27.025 73.042 25.376 1.00 30.00 C ATOM 641 C CYS 85 28.191 73.966 25.107 1.00 30.00 C ATOM 642 O CYS 85 28.811 74.498 26.029 1.00 30.00 O ATOM 643 CB CYS 85 25.693 73.848 25.422 1.00 30.00 C ATOM 644 SG CYS 85 25.488 74.926 26.880 1.00 30.00 S ATOM 645 N CYS 86 28.514 74.163 23.809 1.00 30.00 N ATOM 646 CA CYS 86 29.543 75.090 23.401 1.00 30.00 C ATOM 647 C CYS 86 28.887 76.390 23.000 1.00 30.00 C ATOM 648 O CYS 86 28.023 76.406 22.125 1.00 30.00 O ATOM 649 CB CYS 86 30.362 74.591 22.185 1.00 30.00 C ATOM 650 SG CYS 86 31.340 73.122 22.598 1.00 30.00 S ATOM 651 N HIS 87 29.294 77.516 23.634 1.00 30.00 N ATOM 652 CA HIS 87 28.715 78.815 23.348 1.00 30.00 C ATOM 653 C HIS 87 29.202 79.366 22.040 1.00 30.00 C ATOM 654 O HIS 87 28.406 79.735 21.177 1.00 30.00 O ATOM 655 CB HIS 87 28.966 79.809 24.513 1.00 30.00 C ATOM 656 CG HIS 87 30.401 80.031 24.908 1.00 30.00 C ATOM 657 ND1 HIS 87 31.157 81.108 24.498 1.00 30.00 N ATOM 658 CD2 HIS 87 31.204 79.311 25.738 1.00 30.00 C ATOM 659 CE1 HIS 87 32.366 80.991 25.099 1.00 30.00 C ATOM 660 NE2 HIS 87 32.444 79.913 25.854 1.00 30.00 N ATOM 661 N ASP 88 30.536 79.414 21.858 1.00 30.00 N ATOM 662 CA ASP 88 31.133 79.797 20.612 1.00 30.00 C ATOM 663 C ASP 88 32.250 78.822 20.314 1.00 30.00 C ATOM 664 O ASP 88 33.064 78.496 21.180 1.00 30.00 O ATOM 665 CB ASP 88 31.711 81.241 20.656 1.00 30.00 C ATOM 666 CG ASP 88 30.640 82.280 20.986 1.00 30.00 C ATOM 667 OD1 ASP 88 30.043 82.826 20.024 1.00 30.00 O ATOM 668 OD2 ASP 88 30.443 82.555 22.202 1.00 30.00 O ATOM 669 N PHE 89 32.291 78.326 19.060 1.00 30.00 N ATOM 670 CA PHE 89 33.053 77.154 18.699 1.00 30.00 C ATOM 671 C PHE 89 34.544 77.316 18.762 1.00 30.00 C ATOM 672 O PHE 89 35.222 76.579 19.481 1.00 30.00 O ATOM 673 CB PHE 89 32.606 76.666 17.291 1.00 30.00 C ATOM 674 CG PHE 89 33.193 75.323 16.928 1.00 30.00 C ATOM 675 CD1 PHE 89 32.657 74.136 17.458 1.00 30.00 C ATOM 676 CD2 PHE 89 34.277 75.242 16.037 1.00 30.00 C ATOM 677 CE1 PHE 89 33.196 72.896 17.098 1.00 30.00 C ATOM 678 CE2 PHE 89 34.820 74.000 15.685 1.00 30.00 C ATOM 679 CZ PHE 89 34.279 72.829 16.221 1.00 30.00 C ATOM 680 N ASP 90 35.080 78.295 17.995 1.00 30.00 N ATOM 681 CA ASP 90 36.502 78.501 17.827 1.00 30.00 C ATOM 682 C ASP 90 37.200 78.695 19.157 1.00 30.00 C ATOM 683 O ASP 90 38.233 78.085 19.398 1.00 30.00 O ATOM 684 CB ASP 90 36.797 79.709 16.892 1.00 30.00 C ATOM 685 CG ASP 90 36.188 79.502 15.507 1.00 30.00 C ATOM 686 OD1 ASP 90 34.933 79.560 15.410 1.00 30.00 O ATOM 687 OD2 ASP 90 36.966 79.295 14.539 1.00 30.00 O ATOM 688 N GLU 91 36.625 79.499 20.080 1.00 30.00 N ATOM 689 CA GLU 91 37.280 79.727 21.350 1.00 30.00 C ATOM 690 C GLU 91 37.234 78.572 22.324 1.00 30.00 C ATOM 691 O GLU 91 38.129 78.437 23.154 1.00 30.00 O ATOM 692 CB GLU 91 36.772 81.020 22.039 1.00 30.00 C ATOM 693 CG GLU 91 35.363 80.970 22.669 1.00 30.00 C ATOM 694 CD GLU 91 34.970 82.338 23.230 1.00 30.00 C ATOM 695 OE1 GLU 91 33.986 82.914 22.699 1.00 30.00 O ATOM 696 OE2 GLU 91 35.636 82.803 24.188 1.00 30.00 O ATOM 697 N LEU 92 36.216 77.686 22.238 1.00 30.00 N ATOM 698 CA LEU 92 36.188 76.484 23.052 1.00 30.00 C ATOM 699 C LEU 92 37.173 75.479 22.515 1.00 30.00 C ATOM 700 O LEU 92 38.023 74.967 23.243 1.00 30.00 O ATOM 701 CB LEU 92 34.756 75.880 23.085 1.00 30.00 C ATOM 702 CG LEU 92 34.509 74.637 23.989 1.00 30.00 C ATOM 703 CD1 LEU 92 35.092 74.792 25.404 1.00 30.00 C ATOM 704 CD2 LEU 92 34.924 73.289 23.361 1.00 30.00 C ATOM 705 N CYS 93 37.076 75.176 21.201 1.00 30.00 N ATOM 706 CA CYS 93 37.894 74.155 20.595 1.00 30.00 C ATOM 707 C CYS 93 39.342 74.569 20.447 1.00 30.00 C ATOM 708 O CYS 93 40.224 73.734 20.636 1.00 30.00 O ATOM 709 CB CYS 93 37.335 73.736 19.214 1.00 30.00 C ATOM 710 SG CYS 93 35.751 72.858 19.408 1.00 30.00 S ATOM 711 N LEU 94 39.641 75.865 20.147 1.00 30.00 N ATOM 712 CA LEU 94 41.009 76.354 20.087 1.00 30.00 C ATOM 713 C LEU 94 41.458 76.956 21.408 1.00 30.00 C ATOM 714 O LEU 94 42.049 78.034 21.474 1.00 30.00 O ATOM 715 CB LEU 94 41.190 77.346 18.905 1.00 30.00 C ATOM 716 CG LEU 94 42.639 77.528 18.389 1.00 30.00 C ATOM 717 CD1 LEU 94 42.682 78.627 17.316 1.00 30.00 C ATOM 718 CD2 LEU 94 43.254 76.232 17.828 1.00 30.00 C ATOM 719 N LYS 95 41.212 76.216 22.513 1.00 30.00 N ATOM 720 CA LYS 95 41.691 76.576 23.822 1.00 30.00 C ATOM 721 C LYS 95 43.005 75.861 24.099 1.00 30.00 C ATOM 722 O LYS 95 43.058 74.646 24.317 1.00 30.00 O ATOM 723 CB LYS 95 40.656 76.241 24.922 1.00 30.00 C ATOM 724 CG LYS 95 40.996 76.814 26.309 1.00 30.00 C ATOM 725 CD LYS 95 39.876 76.565 27.333 1.00 30.00 C ATOM 726 CE LYS 95 40.076 77.264 28.681 1.00 30.00 C ATOM 727 NZ LYS 95 41.240 76.699 29.393 1.00 30.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 66.01 48.7 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 64.46 51.8 56 100.0 56 ARMSMC BURIED . . . . . . . . 69.80 40.9 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.34 38.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 92.63 37.1 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 91.51 36.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 90.94 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.89 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 52.72 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 81.39 44.4 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 44.19 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.38 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 80.44 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 62.45 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 112.26 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.33 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 63.33 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 65.58 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 53.37 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.48 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.48 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1869 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 7.94 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.09 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.64 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.09 142 100.0 142 CRMSMC BURIED . . . . . . . . 6.35 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.36 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 10.09 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.16 103 100.0 103 CRMSSC BURIED . . . . . . . . 7.96 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.92 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.51 219 100.0 219 CRMSALL BURIED . . . . . . . . 7.15 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 23.097 0.636 0.696 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 22.661 0.617 0.684 29 100.0 29 ERRCA BURIED . . . . . . . . 24.247 0.683 0.729 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 22.967 0.630 0.692 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 22.530 0.612 0.679 142 100.0 142 ERRMC BURIED . . . . . . . . 24.095 0.678 0.726 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 20.327 0.526 0.612 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 20.620 0.537 0.621 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 19.440 0.491 0.585 103 100.0 103 ERRSC BURIED . . . . . . . . 22.612 0.615 0.682 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 21.835 0.586 0.658 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 21.234 0.562 0.640 219 100.0 219 ERRALL BURIED . . . . . . . . 23.401 0.648 0.705 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 12 33 40 40 DISTCA CA (P) 0.00 2.50 5.00 30.00 82.50 40 DISTCA CA (RMS) 0.00 1.98 2.43 3.76 6.30 DISTCA ALL (N) 0 1 11 63 211 303 303 DISTALL ALL (P) 0.00 0.33 3.63 20.79 69.64 303 DISTALL ALL (RMS) 0.00 1.98 2.58 3.83 6.55 DISTALL END of the results output