####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS218_1_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS218_1_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 2.27 2.27 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 43 97 - 139 1.82 2.31 LONGEST_CONTINUOUS_SEGMENT: 43 98 - 140 1.89 2.31 LCS_AVERAGE: 93.68 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 114 - 139 0.99 2.39 LCS_AVERAGE: 42.52 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 5 45 3 3 9 12 22 31 35 38 42 42 43 44 45 45 45 45 45 45 45 45 LCS_GDT A 97 A 97 3 43 45 3 3 4 6 7 15 30 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT R 98 R 98 3 43 45 3 3 4 4 5 12 21 38 39 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT G 99 G 99 12 43 45 11 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT W 100 W 100 12 43 45 15 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT E 101 E 101 12 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 102 C 102 12 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT T 103 T 103 12 43 45 9 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT K 104 K 104 12 43 45 9 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT D 105 D 105 12 43 45 5 22 32 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT R 106 R 106 12 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 107 C 107 12 43 45 12 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT G 108 G 108 12 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT E 109 E 109 12 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT V 110 V 110 12 43 45 9 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT R 111 R 111 11 43 45 3 4 11 13 27 37 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT N 112 N 112 9 43 45 7 23 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT E 113 E 113 9 43 45 3 10 19 28 36 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT E 114 E 114 26 43 45 4 16 32 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT N 115 N 115 26 43 45 4 21 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT A 116 A 116 26 43 45 8 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 117 C 117 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT H 118 H 118 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 119 C 119 26 43 45 7 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT S 120 S 120 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT E 121 E 121 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT D 122 D 122 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 123 C 123 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT L 124 L 124 26 43 45 5 24 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT S 125 S 125 26 43 45 9 25 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT R 126 R 126 26 43 45 3 22 33 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT G 127 G 127 26 43 45 3 22 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT D 128 D 128 26 43 45 12 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 129 C 129 26 43 45 11 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 130 C 130 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT T 131 T 131 26 43 45 15 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT N 132 N 132 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT Y 133 Y 133 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT Q 134 Q 134 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT V 135 V 135 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT V 136 V 136 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT C 137 C 137 26 43 45 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT K 138 K 138 26 43 45 15 30 34 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT G 139 G 139 26 43 45 3 24 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT E 140 E 140 3 43 45 0 3 3 4 5 5 7 35 39 41 43 44 45 45 45 45 45 45 45 45 LCS_AVERAGE LCS_A: 78.73 ( 42.52 93.68 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 30 35 38 39 40 41 41 42 43 43 44 45 45 45 45 45 45 45 45 GDT PERCENT_AT 35.56 66.67 77.78 84.44 86.67 88.89 91.11 91.11 93.33 95.56 95.56 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.61 0.87 0.96 1.06 1.22 1.35 1.35 1.65 1.82 1.82 2.06 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 GDT RMS_ALL_AT 2.53 2.47 2.40 2.42 2.37 2.34 2.33 2.33 2.35 2.31 2.31 2.30 2.27 2.27 2.27 2.27 2.27 2.27 2.27 2.27 # Checking swapping # possible swapping detected: D 105 D 105 # possible swapping detected: E 121 E 121 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 6.585 0 0.683 1.413 7.362 20.238 18.367 LGA A 97 A 97 6.108 0 0.183 0.216 8.632 22.738 18.762 LGA R 98 R 98 6.228 0 0.592 1.063 19.592 26.786 10.000 LGA G 99 G 99 0.407 0 0.449 0.449 2.161 88.810 88.810 LGA W 100 W 100 0.528 0 0.171 0.970 5.415 95.238 67.245 LGA E 101 E 101 0.675 0 0.096 0.151 1.681 86.071 84.550 LGA C 102 C 102 0.766 0 0.045 0.147 1.011 90.476 88.968 LGA T 103 T 103 1.273 0 0.044 0.950 3.732 81.429 77.415 LGA K 104 K 104 1.165 0 0.062 0.721 2.024 77.143 79.683 LGA D 105 D 105 2.085 0 0.170 1.003 5.609 66.905 53.512 LGA R 106 R 106 0.690 0 0.174 1.099 4.821 90.476 74.675 LGA C 107 C 107 1.277 0 0.040 0.786 3.635 83.690 76.587 LGA G 108 G 108 0.887 0 0.174 0.174 1.060 88.214 88.214 LGA E 109 E 109 1.195 0 0.013 0.606 1.829 81.429 83.492 LGA V 110 V 110 1.085 0 0.498 1.388 4.925 69.762 62.857 LGA R 111 R 111 3.751 0 0.095 1.386 14.654 50.595 20.260 LGA N 112 N 112 1.019 0 0.041 1.309 6.419 77.262 55.119 LGA E 113 E 113 3.587 0 0.117 1.264 8.905 51.905 29.048 LGA E 114 E 114 2.379 0 0.436 0.797 7.701 60.952 41.958 LGA N 115 N 115 1.436 0 0.093 0.395 1.875 81.548 79.345 LGA A 116 A 116 1.113 0 0.014 0.040 1.584 85.952 83.333 LGA C 117 C 117 0.440 0 0.012 0.152 1.341 90.595 89.048 LGA H 118 H 118 0.743 0 0.126 0.526 1.797 88.214 82.476 LGA C 119 C 119 0.684 0 0.082 0.153 1.021 90.476 88.968 LGA S 120 S 120 0.427 0 0.012 0.112 0.682 95.238 95.238 LGA E 121 E 121 0.935 0 0.174 0.998 4.411 86.071 68.095 LGA D 122 D 122 0.419 0 0.253 1.204 3.810 90.595 81.310 LGA C 123 C 123 0.532 0 0.035 0.111 1.165 90.595 90.556 LGA L 124 L 124 1.505 0 0.041 1.415 5.132 75.238 68.393 LGA S 125 S 125 1.812 0 0.202 0.695 4.056 72.976 66.984 LGA R 126 R 126 1.866 0 0.267 1.028 4.857 68.929 60.649 LGA G 127 G 127 1.188 0 0.050 0.050 1.391 81.429 81.429 LGA D 128 D 128 0.862 0 0.123 1.241 3.986 88.214 76.071 LGA C 129 C 129 1.049 0 0.062 0.183 1.103 85.952 85.952 LGA C 130 C 130 0.376 0 0.041 0.126 0.848 95.238 93.651 LGA T 131 T 131 1.127 0 0.130 1.127 3.100 88.214 78.367 LGA N 132 N 132 0.577 0 0.186 1.287 4.769 88.214 72.738 LGA Y 133 Y 133 0.484 0 0.065 0.384 1.391 100.000 91.389 LGA Q 134 Q 134 0.709 0 0.047 0.321 2.549 90.476 80.847 LGA V 135 V 135 0.927 0 0.048 0.069 1.141 88.214 85.306 LGA V 136 V 136 0.398 0 0.083 0.093 0.633 97.619 97.279 LGA C 137 C 137 0.459 0 0.217 0.752 3.428 92.976 85.397 LGA K 138 K 138 1.154 0 0.168 0.856 7.618 79.524 59.048 LGA G 139 G 139 1.822 0 0.678 0.678 2.791 67.143 67.143 LGA E 140 E 140 7.016 0 0.366 1.128 12.652 10.476 5.503 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 2.275 2.249 3.992 77.339 69.645 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 41 1.35 85.556 89.736 2.829 LGA_LOCAL RMSD: 1.349 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.325 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.275 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.917482 * X + 0.389649 * Y + 0.080003 * Z + 24.610727 Y_new = 0.377316 * X + -0.916179 * Y + 0.135089 * Z + 93.893631 Z_new = 0.125935 * X + -0.093755 * Y + -0.987598 * Z + 22.652010 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.390168 -0.126270 -3.046944 [DEG: 22.3550 -7.2347 -174.5770 ] ZXZ: 2.606909 2.983938 2.210753 [DEG: 149.3649 170.9671 126.6668 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS218_1_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS218_1_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 41 1.35 89.736 2.27 REMARK ---------------------------------------------------------- MOLECULE T0543TS218_1_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT N/A ATOM 120 N THR 96 17.037 90.952 21.426 1.00 0.00 N ATOM 121 CA THR 96 15.621 90.941 21.108 1.00 0.00 C ATOM 122 C THR 96 14.918 89.703 21.633 1.00 0.00 C ATOM 123 O THR 96 15.564 88.770 22.102 1.00 0.00 O ATOM 124 CB THR 96 15.384 90.977 19.587 1.00 0.00 C ATOM 125 OG1 THR 96 15.972 89.820 18.980 1.00 0.00 O ATOM 126 CG2 THR 96 16.011 92.224 18.980 1.00 0.00 C ATOM 127 N ALA 97 13.593 89.699 21.552 1.00 0.00 N ATOM 128 CA ALA 97 12.801 88.569 22.026 1.00 0.00 C ATOM 129 C ALA 97 12.599 87.543 20.916 1.00 0.00 C ATOM 130 O ALA 97 12.978 87.772 19.769 1.00 0.00 O ATOM 131 CB ALA 97 11.432 89.041 22.494 1.00 0.00 C ATOM 132 N ARG 98 12.000 86.410 21.269 1.00 0.00 N ATOM 133 CA ARG 98 11.749 85.346 20.303 1.00 0.00 C ATOM 134 C ARG 98 10.855 85.839 19.169 1.00 0.00 C ATOM 135 O ARG 98 9.811 86.444 19.407 1.00 0.00 O ATOM 136 CB ARG 98 11.055 84.162 20.979 1.00 0.00 C ATOM 137 CG ARG 98 11.954 83.366 21.912 1.00 0.00 C ATOM 138 CD ARG 98 11.202 82.207 22.547 1.00 0.00 C ATOM 139 NE ARG 98 12.038 81.460 23.483 1.00 0.00 N ATOM 140 CZ ARG 98 11.604 80.451 24.231 1.00 0.00 C ATOM 141 NH1 ARG 98 12.437 79.829 25.054 1.00 0.00 H ATOM 142 NH2 ARG 98 10.337 80.067 24.155 1.00 0.00 H ATOM 143 N GLY 99 11.274 85.576 17.937 1.00 0.00 N ATOM 144 CA GLY 99 10.502 85.999 16.784 1.00 0.00 C ATOM 145 C GLY 99 10.268 84.873 15.796 1.00 0.00 C ATOM 146 O GLY 99 10.914 84.815 14.748 1.00 0.00 O ATOM 147 N TRP 100 9.345 83.978 16.128 1.00 0.00 N ATOM 148 CA TRP 100 9.030 82.846 15.262 1.00 0.00 C ATOM 149 C TRP 100 8.047 83.254 14.171 1.00 0.00 C ATOM 150 O TRP 100 7.113 82.517 13.856 1.00 0.00 O ATOM 151 CB TRP 100 8.402 81.710 16.073 1.00 0.00 C ATOM 152 CG TRP 100 9.352 81.062 17.032 1.00 0.00 C ATOM 153 CD1 TRP 100 10.683 81.327 17.172 1.00 0.00 C ATOM 154 CD2 TRP 100 9.042 80.038 17.987 1.00 0.00 C ATOM 155 NE1 TRP 100 11.224 80.533 18.155 1.00 0.00 N ATOM 156 CE2 TRP 100 10.235 79.732 18.671 1.00 0.00 C ATOM 157 CE3 TRP 100 7.874 79.351 18.330 1.00 0.00 C ATOM 158 CZ2 TRP 100 10.294 78.769 19.677 1.00 0.00 C ATOM 159 CZ3 TRP 100 7.936 78.398 19.327 1.00 0.00 C ATOM 160 CH2 TRP 100 9.135 78.113 19.991 1.00 0.00 H ATOM 161 N GLU 101 8.262 84.433 13.596 1.00 0.00 N ATOM 162 CA GLU 101 7.394 84.940 12.540 1.00 0.00 C ATOM 163 C GLU 101 8.194 85.690 11.482 1.00 0.00 C ATOM 164 O GLU 101 9.332 86.090 11.719 1.00 0.00 O ATOM 165 CB GLU 101 6.353 85.901 13.116 1.00 0.00 C ATOM 166 CG GLU 101 5.395 85.258 14.106 1.00 0.00 C ATOM 167 CD GLU 101 4.388 86.242 14.666 1.00 0.00 C ATOM 168 OE1 GLU 101 4.446 87.431 14.288 1.00 0.00 O ATOM 169 OE2 GLU 101 3.541 85.824 15.485 1.00 0.00 O ATOM 170 N CYS 102 7.593 85.875 10.312 1.00 0.00 N ATOM 171 CA CYS 102 8.247 86.579 9.217 1.00 0.00 C ATOM 172 C CYS 102 7.406 87.763 8.749 1.00 0.00 C ATOM 173 O CYS 102 6.204 87.824 9.006 1.00 0.00 O ATOM 174 CB CYS 102 8.456 85.642 8.026 1.00 0.00 C ATOM 175 SG CYS 102 9.458 84.181 8.393 1.00 0.00 S ATOM 176 N THR 103 8.047 88.703 8.060 1.00 0.00 N ATOM 177 CA THR 103 7.358 89.884 7.557 1.00 0.00 C ATOM 178 C THR 103 7.389 89.924 6.032 1.00 0.00 C ATOM 179 O THR 103 8.334 89.444 5.406 1.00 0.00 O ATOM 180 CB THR 103 8.011 91.181 8.073 1.00 0.00 C ATOM 181 OG1 THR 103 8.016 91.179 9.506 1.00 0.00 O ATOM 182 CG2 THR 103 7.238 92.396 7.585 1.00 0.00 C ATOM 183 N LYS 104 6.346 90.496 5.438 1.00 0.00 N ATOM 184 CA LYS 104 6.252 90.599 3.987 1.00 0.00 C ATOM 185 C LYS 104 7.603 90.967 3.380 1.00 0.00 C ATOM 186 O LYS 104 8.089 90.297 2.467 1.00 0.00 O ATOM 187 CB LYS 104 5.240 91.676 3.590 1.00 0.00 C ATOM 188 CG LYS 104 5.021 91.799 2.092 1.00 0.00 C ATOM 189 CD LYS 104 3.968 92.849 1.772 1.00 0.00 C ATOM 190 CE LYS 104 3.773 92.997 0.272 1.00 0.00 C ATOM 191 NZ LYS 104 2.738 94.015 -0.055 1.00 0.00 N ATOM 192 N ASP 105 8.204 92.036 3.891 1.00 0.00 N ATOM 193 CA ASP 105 9.500 92.493 3.399 1.00 0.00 C ATOM 194 C ASP 105 10.568 91.425 3.607 1.00 0.00 C ATOM 195 O ASP 105 11.324 91.103 2.691 1.00 0.00 O ATOM 196 CB ASP 105 9.938 93.759 4.140 1.00 0.00 C ATOM 197 CG ASP 105 9.136 94.979 3.733 1.00 0.00 C ATOM 198 OD1 ASP 105 8.411 94.903 2.718 1.00 0.00 O ATOM 199 OD2 ASP 105 9.233 96.012 4.429 1.00 0.00 O ATOM 200 N ARG 106 10.623 90.879 4.817 1.00 0.00 N ATOM 201 CA ARG 106 11.599 89.846 5.145 1.00 0.00 C ATOM 202 C ARG 106 11.672 88.797 4.041 1.00 0.00 C ATOM 203 O ARG 106 12.756 88.336 3.677 1.00 0.00 O ATOM 204 CB ARG 106 11.217 89.143 6.449 1.00 0.00 C ATOM 205 CG ARG 106 11.392 90.000 7.691 1.00 0.00 C ATOM 206 CD ARG 106 10.946 89.259 8.942 1.00 0.00 C ATOM 207 NE ARG 106 11.058 90.089 10.139 1.00 0.00 N ATOM 208 CZ ARG 106 10.625 89.726 11.342 1.00 0.00 C ATOM 209 NH1 ARG 106 10.770 90.547 12.373 1.00 0.00 H ATOM 210 NH2 ARG 106 10.048 88.545 11.510 1.00 0.00 H ATOM 211 N CYS 107 10.514 88.422 3.508 1.00 0.00 N ATOM 212 CA CYS 107 10.447 87.426 2.446 1.00 0.00 C ATOM 213 C CYS 107 11.421 87.764 1.319 1.00 0.00 C ATOM 214 O CYS 107 11.417 88.878 0.794 1.00 0.00 O ATOM 215 CB CYS 107 9.037 87.366 1.856 1.00 0.00 C ATOM 216 SG CYS 107 8.847 86.193 0.493 1.00 0.00 S ATOM 217 N GLY 108 12.254 86.792 0.955 1.00 0.00 N ATOM 218 CA GLY 108 13.222 87.006 -0.105 1.00 0.00 C ATOM 219 C GLY 108 14.401 87.843 0.347 1.00 0.00 C ATOM 220 O GLY 108 14.903 88.679 -0.404 1.00 0.00 O ATOM 221 N GLU 109 14.846 87.619 1.579 1.00 0.00 N ATOM 222 CA GLU 109 15.974 88.363 2.132 1.00 0.00 C ATOM 223 C GLU 109 17.244 87.518 2.107 1.00 0.00 C ATOM 224 O GLU 109 17.188 86.290 2.025 1.00 0.00 O ATOM 225 CB GLU 109 15.692 88.762 3.582 1.00 0.00 C ATOM 226 CG GLU 109 15.551 87.585 4.534 1.00 0.00 C ATOM 227 CD GLU 109 15.360 88.020 5.974 1.00 0.00 C ATOM 228 OE1 GLU 109 16.275 88.666 6.526 1.00 0.00 O ATOM 229 OE2 GLU 109 14.295 87.715 6.550 1.00 0.00 O ATOM 230 N VAL 110 18.392 88.185 2.177 1.00 0.00 N ATOM 231 CA VAL 110 19.677 87.499 2.165 1.00 0.00 C ATOM 232 C VAL 110 20.594 88.040 3.256 1.00 0.00 C ATOM 233 O VAL 110 21.808 88.131 3.076 1.00 0.00 O ATOM 234 CB VAL 110 20.399 87.678 0.817 1.00 0.00 C ATOM 235 CG1 VAL 110 19.644 86.960 -0.291 1.00 0.00 C ATOM 236 CG2 VAL 110 20.498 89.152 0.456 1.00 0.00 C ATOM 237 N ARG 111 20.005 88.402 4.392 1.00 0.00 N ATOM 238 CA ARG 111 20.769 88.934 5.513 1.00 0.00 C ATOM 239 C ARG 111 20.108 88.575 6.842 1.00 0.00 C ATOM 240 O ARG 111 19.057 89.111 7.192 1.00 0.00 O ATOM 241 CB ARG 111 20.863 90.459 5.423 1.00 0.00 C ATOM 242 CG ARG 111 21.699 91.096 6.521 1.00 0.00 C ATOM 243 CD ARG 111 21.702 92.611 6.403 1.00 0.00 C ATOM 244 NE ARG 111 22.522 93.238 7.437 1.00 0.00 N ATOM 245 CZ ARG 111 22.062 93.627 8.621 1.00 0.00 C ATOM 246 NH1 ARG 111 22.882 94.189 9.498 1.00 0.00 H ATOM 247 NH2 ARG 111 20.783 93.453 8.925 1.00 0.00 H ATOM 248 N ASN 112 20.732 87.660 7.579 1.00 0.00 N ATOM 249 CA ASN 112 20.207 87.227 8.867 1.00 0.00 C ATOM 250 C ASN 112 21.338 86.937 9.848 1.00 0.00 C ATOM 251 O ASN 112 22.283 86.214 9.529 1.00 0.00 O ATOM 252 CB ASN 112 19.375 85.952 8.706 1.00 0.00 C ATOM 253 CG ASN 112 18.156 86.160 7.829 1.00 0.00 C ATOM 254 OD1 ASN 112 17.157 86.733 8.264 1.00 0.00 O ATOM 255 ND2 ASN 112 18.234 85.692 6.589 1.00 0.00 N ATOM 256 N GLU 113 21.235 87.506 11.046 1.00 0.00 N ATOM 257 CA GLU 113 22.249 87.309 12.074 1.00 0.00 C ATOM 258 C GLU 113 21.618 86.881 13.394 1.00 0.00 C ATOM 259 O GLU 113 22.133 86.002 14.084 1.00 0.00 O ATOM 260 CB GLU 113 23.024 88.606 12.318 1.00 0.00 C ATOM 261 CG GLU 113 23.859 89.062 11.131 1.00 0.00 C ATOM 262 CD GLU 113 23.044 89.820 10.103 1.00 0.00 C ATOM 263 OE1 GLU 113 21.841 90.048 10.348 1.00 0.00 O ATOM 264 OE2 GLU 113 23.608 90.188 9.052 1.00 0.00 O ATOM 265 N GLU 114 20.497 87.509 13.739 1.00 0.00 N ATOM 266 CA GLU 114 19.796 87.193 14.977 1.00 0.00 C ATOM 267 C GLU 114 18.316 86.929 14.712 1.00 0.00 C ATOM 268 O GLU 114 17.473 87.799 14.924 1.00 0.00 O ATOM 269 CB GLU 114 19.907 88.354 15.967 1.00 0.00 C ATOM 270 CG GLU 114 19.377 88.038 17.357 1.00 0.00 C ATOM 271 CD GLU 114 19.518 89.206 18.313 1.00 0.00 C ATOM 272 OE1 GLU 114 20.018 90.267 17.886 1.00 0.00 O ATOM 273 OE2 GLU 114 19.127 89.060 19.490 1.00 0.00 O ATOM 274 N ASN 115 18.009 85.722 14.247 1.00 0.00 N ATOM 275 CA ASN 115 16.633 85.345 13.948 1.00 0.00 C ATOM 276 C ASN 115 16.443 83.836 14.077 1.00 0.00 C ATOM 277 O ASN 115 17.169 83.053 13.465 1.00 0.00 O ATOM 278 CB ASN 115 16.264 85.753 12.521 1.00 0.00 C ATOM 279 CG ASN 115 16.309 87.254 12.314 1.00 0.00 C ATOM 280 OD1 ASN 115 15.403 87.975 12.732 1.00 0.00 O ATOM 281 ND2 ASN 115 17.366 87.729 11.665 1.00 0.00 N ATOM 282 N ALA 116 15.459 83.436 14.878 1.00 0.00 N ATOM 283 CA ALA 116 15.173 82.022 15.087 1.00 0.00 C ATOM 284 C ALA 116 14.879 81.323 13.766 1.00 0.00 C ATOM 285 O ALA 116 15.403 80.243 13.492 1.00 0.00 O ATOM 286 CB ALA 116 13.963 81.856 15.993 1.00 0.00 C ATOM 287 N CYS 117 14.037 81.946 12.947 1.00 0.00 N ATOM 288 CA CYS 117 13.675 81.384 11.651 1.00 0.00 C ATOM 289 C CYS 117 14.315 82.180 10.516 1.00 0.00 C ATOM 290 O CYS 117 14.951 83.208 10.746 1.00 0.00 O ATOM 291 CB CYS 117 12.157 81.414 11.460 1.00 0.00 C ATOM 292 SG CYS 117 11.465 83.068 11.226 1.00 0.00 S ATOM 293 N HIS 118 14.142 81.695 9.291 1.00 0.00 N ATOM 294 CA HIS 118 14.702 82.360 8.120 1.00 0.00 C ATOM 295 C HIS 118 13.606 82.728 7.125 1.00 0.00 C ATOM 296 O HIS 118 12.802 81.881 6.729 1.00 0.00 O ATOM 297 CB HIS 118 15.703 81.446 7.412 1.00 0.00 C ATOM 298 CG HIS 118 16.924 81.144 8.223 1.00 0.00 C ATOM 299 ND1 HIS 118 17.884 80.242 7.817 1.00 0.00 N ATOM 300 CD2 HIS 118 17.462 81.597 9.498 1.00 0.00 C ATOM 301 CE1 HIS 118 18.853 80.185 8.747 1.00 0.00 C ATOM 302 NE2 HIS 118 18.607 80.995 9.758 1.00 0.00 N ATOM 303 N CYS 119 13.580 83.994 6.723 1.00 0.00 N ATOM 304 CA CYS 119 12.584 84.476 5.774 1.00 0.00 C ATOM 305 C CYS 119 13.177 84.591 4.373 1.00 0.00 C ATOM 306 O CYS 119 12.901 85.546 3.645 1.00 0.00 O ATOM 307 CB CYS 119 12.071 85.855 6.191 1.00 0.00 C ATOM 308 SG CYS 119 11.271 85.897 7.811 1.00 0.00 S ATOM 309 N SER 120 13.997 83.611 4.001 1.00 0.00 N ATOM 310 CA SER 120 14.632 83.604 2.689 1.00 0.00 C ATOM 311 C SER 120 14.250 82.350 1.908 1.00 0.00 C ATOM 312 O SER 120 13.869 81.335 2.490 1.00 0.00 O ATOM 313 CB SER 120 16.154 83.636 2.831 1.00 0.00 C ATOM 314 OG SER 120 16.631 82.474 3.486 1.00 0.00 O ATOM 315 N GLU 121 14.356 82.431 0.585 1.00 0.00 N ATOM 316 CA GLU 121 14.022 81.303 -0.278 1.00 0.00 C ATOM 317 C GLU 121 14.762 80.043 0.164 1.00 0.00 C ATOM 318 O GLU 121 14.174 78.967 0.258 1.00 0.00 O ATOM 319 CB GLU 121 14.412 81.604 -1.726 1.00 0.00 C ATOM 320 CG GLU 121 14.076 80.491 -2.705 1.00 0.00 C ATOM 321 CD GLU 121 14.439 80.840 -4.134 1.00 0.00 C ATOM 322 OE1 GLU 121 14.922 81.969 -4.365 1.00 0.00 O ATOM 323 OE2 GLU 121 14.240 79.987 -5.024 1.00 0.00 O ATOM 324 N ASP 122 16.055 80.186 0.434 1.00 0.00 N ATOM 325 CA ASP 122 16.874 79.060 0.866 1.00 0.00 C ATOM 326 C ASP 122 16.131 78.206 1.889 1.00 0.00 C ATOM 327 O ASP 122 16.102 76.982 1.788 1.00 0.00 O ATOM 328 CB ASP 122 18.170 79.557 1.510 1.00 0.00 C ATOM 329 CG ASP 122 19.143 80.124 0.495 1.00 0.00 C ATOM 330 OD1 ASP 122 18.897 79.965 -0.719 1.00 0.00 O ATOM 331 OD2 ASP 122 20.152 80.730 0.914 1.00 0.00 O ATOM 332 N CYS 123 15.529 78.866 2.875 1.00 0.00 N ATOM 333 CA CYS 123 14.787 78.168 3.918 1.00 0.00 C ATOM 334 C CYS 123 13.916 77.065 3.320 1.00 0.00 C ATOM 335 O CYS 123 13.778 75.986 3.898 1.00 0.00 O ATOM 336 CB CYS 123 13.878 79.142 4.672 1.00 0.00 C ATOM 337 SG CYS 123 12.649 79.969 3.634 1.00 0.00 S ATOM 338 N LEU 124 13.329 77.345 2.161 1.00 0.00 N ATOM 339 CA LEU 124 12.474 76.377 1.484 1.00 0.00 C ATOM 340 C LEU 124 13.242 75.099 1.167 1.00 0.00 C ATOM 341 O LEU 124 12.796 73.999 1.493 1.00 0.00 O ATOM 342 CB LEU 124 11.946 76.955 0.170 1.00 0.00 C ATOM 343 CG LEU 124 11.044 76.039 -0.659 1.00 0.00 C ATOM 344 CD1 LEU 124 9.785 75.680 0.115 1.00 0.00 C ATOM 345 CD2 LEU 124 10.627 76.723 -1.953 1.00 0.00 C ATOM 346 N SER 125 14.398 75.251 0.529 1.00 0.00 N ATOM 347 CA SER 125 15.230 74.109 0.170 1.00 0.00 C ATOM 348 C SER 125 15.834 73.463 1.415 1.00 0.00 C ATOM 349 O SER 125 15.711 72.255 1.619 1.00 0.00 O ATOM 350 CB SER 125 16.375 74.546 -0.746 1.00 0.00 C ATOM 351 OG SER 125 15.885 74.991 -1.998 1.00 0.00 O ATOM 352 N ARG 126 16.483 74.278 2.242 1.00 0.00 N ATOM 353 CA ARG 126 17.106 73.785 3.463 1.00 0.00 C ATOM 354 C ARG 126 16.066 73.177 4.398 1.00 0.00 C ATOM 355 O ARG 126 16.117 71.988 4.712 1.00 0.00 O ATOM 356 CB ARG 126 17.808 74.925 4.205 1.00 0.00 C ATOM 357 CG ARG 126 18.514 74.494 5.480 1.00 0.00 C ATOM 358 CD ARG 126 19.192 75.672 6.160 1.00 0.00 C ATOM 359 NE ARG 126 19.883 75.274 7.384 1.00 0.00 N ATOM 360 CZ ARG 126 20.442 76.126 8.238 1.00 0.00 C ATOM 361 NH1 ARG 126 21.049 75.672 9.325 1.00 0.00 H ATOM 362 NH2 ARG 126 20.393 77.430 8.001 1.00 0.00 H ATOM 363 N GLY 127 15.122 74.002 4.842 1.00 0.00 N ATOM 364 CA GLY 127 14.083 73.528 5.738 1.00 0.00 C ATOM 365 C GLY 127 14.028 74.318 7.031 1.00 0.00 C ATOM 366 O GLY 127 13.903 73.741 8.112 1.00 0.00 O ATOM 367 N ASP 128 14.121 75.638 6.922 1.00 0.00 N ATOM 368 CA ASP 128 14.083 76.507 8.091 1.00 0.00 C ATOM 369 C ASP 128 13.164 77.702 7.851 1.00 0.00 C ATOM 370 O ASP 128 13.489 78.832 8.219 1.00 0.00 O ATOM 371 CB ASP 128 15.483 77.036 8.412 1.00 0.00 C ATOM 372 CG ASP 128 15.566 77.664 9.789 1.00 0.00 C ATOM 373 OD1 ASP 128 14.992 77.091 10.740 1.00 0.00 O ATOM 374 OD2 ASP 128 16.207 78.728 9.920 1.00 0.00 O ATOM 375 N CYS 129 12.017 77.443 7.233 1.00 0.00 N ATOM 376 CA CYS 129 11.054 78.497 6.943 1.00 0.00 C ATOM 377 C CYS 129 10.148 78.753 8.146 1.00 0.00 C ATOM 378 O CYS 129 9.562 77.827 8.704 1.00 0.00 O ATOM 379 CB CYS 129 10.172 78.106 5.755 1.00 0.00 C ATOM 380 SG CYS 129 11.051 77.992 4.179 1.00 0.00 S ATOM 381 N CYS 130 10.042 80.019 8.536 1.00 0.00 N ATOM 382 CA CYS 130 9.211 80.400 9.673 1.00 0.00 C ATOM 383 C CYS 130 7.868 79.677 9.632 1.00 0.00 C ATOM 384 O CYS 130 7.405 79.265 8.569 1.00 0.00 O ATOM 385 CB CYS 130 8.944 81.906 9.661 1.00 0.00 C ATOM 386 SG CYS 130 10.409 82.927 9.944 1.00 0.00 S ATOM 387 N THR 131 7.247 79.527 10.798 1.00 0.00 N ATOM 388 CA THR 131 5.957 78.855 10.894 1.00 0.00 C ATOM 389 C THR 131 4.939 79.484 9.951 1.00 0.00 C ATOM 390 O THR 131 4.193 78.781 9.268 1.00 0.00 O ATOM 391 CB THR 131 5.382 78.938 12.320 1.00 0.00 C ATOM 392 OG1 THR 131 6.274 78.290 13.236 1.00 0.00 O ATOM 393 CG2 THR 131 4.025 78.254 12.389 1.00 0.00 C ATOM 394 N ASN 132 4.911 80.812 9.915 1.00 0.00 N ATOM 395 CA ASN 132 3.985 81.536 9.053 1.00 0.00 C ATOM 396 C ASN 132 4.719 82.170 7.874 1.00 0.00 C ATOM 397 O ASN 132 4.447 83.309 7.500 1.00 0.00 O ATOM 398 CB ASN 132 3.285 82.649 9.834 1.00 0.00 C ATOM 399 CG ASN 132 2.396 82.115 10.939 1.00 0.00 C ATOM 400 OD1 ASN 132 1.397 81.447 10.677 1.00 0.00 O ATOM 401 ND2 ASN 132 2.758 82.411 12.183 1.00 0.00 N ATOM 402 N TYR 133 5.650 81.420 7.295 1.00 0.00 N ATOM 403 CA TYR 133 6.424 81.908 6.158 1.00 0.00 C ATOM 404 C TYR 133 5.562 81.985 4.903 1.00 0.00 C ATOM 405 O TYR 133 5.590 82.980 4.177 1.00 0.00 O ATOM 406 CB TYR 133 7.602 80.975 5.872 1.00 0.00 C ATOM 407 CG TYR 133 8.446 81.397 4.690 1.00 0.00 C ATOM 408 CD1 TYR 133 9.378 82.420 4.811 1.00 0.00 C ATOM 409 CD2 TYR 133 8.307 80.771 3.458 1.00 0.00 C ATOM 410 CE1 TYR 133 10.153 82.813 3.737 1.00 0.00 C ATOM 411 CE2 TYR 133 9.074 81.151 2.372 1.00 0.00 C ATOM 412 CZ TYR 133 10.002 82.181 2.521 1.00 0.00 C ATOM 413 OH TYR 133 10.772 82.570 1.449 1.00 0.00 H ATOM 414 N GLN 134 4.796 80.927 4.654 1.00 0.00 N ATOM 415 CA GLN 134 3.926 80.874 3.485 1.00 0.00 C ATOM 416 C GLN 134 2.724 81.799 3.657 1.00 0.00 C ATOM 417 O GLN 134 2.276 82.436 2.703 1.00 0.00 O ATOM 418 CB GLN 134 3.408 79.451 3.267 1.00 0.00 C ATOM 419 CG GLN 134 4.471 78.465 2.810 1.00 0.00 C ATOM 420 CD GLN 134 3.946 77.046 2.714 1.00 0.00 C ATOM 421 OE1 GLN 134 2.805 76.768 3.083 1.00 0.00 O ATOM 422 NE2 GLN 134 4.780 76.142 2.213 1.00 0.00 N ATOM 423 N VAL 135 2.209 81.867 4.879 1.00 0.00 N ATOM 424 CA VAL 135 1.058 82.712 5.178 1.00 0.00 C ATOM 425 C VAL 135 1.366 84.176 4.880 1.00 0.00 C ATOM 426 O VAL 135 0.525 84.907 4.363 1.00 0.00 O ATOM 427 CB VAL 135 0.653 82.611 6.660 1.00 0.00 C ATOM 428 CG1 VAL 135 -0.414 83.643 6.992 1.00 0.00 C ATOM 429 CG2 VAL 135 0.097 81.229 6.966 1.00 0.00 C ATOM 430 N VAL 136 2.582 84.597 5.213 1.00 0.00 N ATOM 431 CA VAL 136 3.006 85.972 4.981 1.00 0.00 C ATOM 432 C VAL 136 3.599 86.139 3.587 1.00 0.00 C ATOM 433 O VAL 136 3.194 87.018 2.829 1.00 0.00 O ATOM 434 CB VAL 136 4.078 86.412 5.996 1.00 0.00 C ATOM 435 CG1 VAL 136 4.574 87.813 5.675 1.00 0.00 C ATOM 436 CG2 VAL 136 3.507 86.414 7.406 1.00 0.00 C ATOM 437 N CYS 137 4.564 85.286 3.254 1.00 0.00 N ATOM 438 CA CYS 137 5.213 85.337 1.949 1.00 0.00 C ATOM 439 C CYS 137 4.275 84.837 0.855 1.00 0.00 C ATOM 440 O CYS 137 3.948 85.572 -0.076 1.00 0.00 O ATOM 441 CB CYS 137 6.468 84.461 1.940 1.00 0.00 C ATOM 442 SG CYS 137 7.366 84.462 0.372 1.00 0.00 S ATOM 443 N LYS 138 3.847 83.585 0.974 1.00 0.00 N ATOM 444 CA LYS 138 2.947 82.989 -0.006 1.00 0.00 C ATOM 445 C LYS 138 1.510 83.446 0.224 1.00 0.00 C ATOM 446 O LYS 138 0.586 82.632 0.256 1.00 0.00 O ATOM 447 CB LYS 138 2.985 81.462 0.091 1.00 0.00 C ATOM 448 CG LYS 138 4.323 80.849 -0.288 1.00 0.00 C ATOM 449 CD LYS 138 4.269 79.330 -0.233 1.00 0.00 C ATOM 450 CE LYS 138 5.620 78.719 -0.568 1.00 0.00 C ATOM 451 NZ LYS 138 5.598 77.234 -0.462 1.00 0.00 N ATOM 452 N GLY 139 1.329 84.754 0.385 1.00 0.00 N ATOM 453 CA GLY 139 0.003 85.297 0.611 1.00 0.00 C ATOM 454 C GLY 139 -0.794 85.432 -0.671 1.00 0.00 C ATOM 455 O GLY 139 -0.746 84.555 -1.534 1.00 0.00 O ATOM 456 N GLU 140 -1.529 86.534 -0.795 1.00 0.00 N ATOM 457 CA GLU 140 -2.341 86.778 -1.982 1.00 0.00 C ATOM 458 C GLU 140 -1.985 88.117 -2.620 1.00 0.00 C ATOM 459 O GLU 140 -2.607 89.142 -2.336 1.00 0.00 O ATOM 460 CB GLU 140 -3.827 86.803 -1.619 1.00 0.00 C ATOM 461 CG GLU 140 -4.358 85.482 -1.087 1.00 0.00 C ATOM 462 CD GLU 140 -5.849 85.520 -0.814 1.00 0.00 C ATOM 463 OE1 GLU 140 -6.485 86.547 -1.132 1.00 0.00 O ATOM 464 OE2 GLU 140 -6.381 84.524 -0.281 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 53.51 54.5 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 59.54 50.0 62 100.0 62 ARMSMC BURIED . . . . . . . . 35.20 65.4 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.51 59.0 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 81.04 58.3 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 94.50 42.3 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 39.80 92.3 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.17 56.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 62.89 66.7 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 72.59 56.2 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 38.53 57.1 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.04 53.8 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 68.01 58.3 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 46.50 70.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 108.12 0.0 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.04 66.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 65.04 66.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 79.47 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 7.67 100.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.27 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.27 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0506 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.57 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.31 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.43 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.74 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.41 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.30 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 5.52 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.60 112 100.0 112 CRMSSC BURIED . . . . . . . . 4.59 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.01 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.26 240 100.0 240 CRMSALL BURIED . . . . . . . . 3.38 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.682 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 1.941 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 1.045 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.802 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.097 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 1.093 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.709 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 3.853 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.159 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 2.759 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.667 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.998 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 1.912 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 37 39 41 45 45 45 DISTCA CA (P) 35.56 82.22 86.67 91.11 100.00 45 DISTCA CA (RMS) 0.72 1.14 1.23 1.43 2.27 DISTCA ALL (N) 91 210 256 299 331 345 345 DISTALL ALL (P) 26.38 60.87 74.20 86.67 95.94 345 DISTALL ALL (RMS) 0.75 1.16 1.45 2.05 2.89 DISTALL END of the results output