####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 293), selected 20 , name T0543TS206_1_5-D3 # Molecule2: number of CA atoms 386 ( 3136), selected 20 , name T0543-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS206_1_5-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 143 - 158 4.83 7.43 LCS_AVERAGE: 3.99 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 143 - 148 1.50 13.56 LONGEST_CONTINUOUS_SEGMENT: 6 146 - 151 1.87 8.37 LONGEST_CONTINUOUS_SEGMENT: 6 147 - 152 1.93 11.95 LONGEST_CONTINUOUS_SEGMENT: 6 149 - 154 1.89 12.54 LCS_AVERAGE: 1.40 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 144 - 148 0.68 14.33 LCS_AVERAGE: 1.01 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 141 S 141 3 4 11 3 3 3 4 4 4 5 5 5 7 7 9 9 9 10 12 12 12 12 12 LCS_GDT H 142 H 142 3 4 11 3 3 3 4 4 4 5 7 7 8 10 10 14 15 15 15 17 17 17 18 LCS_GDT W 143 W 143 3 6 16 3 3 3 4 6 6 7 8 9 12 12 13 14 15 15 16 17 18 18 18 LCS_GDT V 144 V 144 5 6 16 3 5 5 5 6 6 7 8 9 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT D 145 D 145 5 6 16 3 5 5 5 6 6 7 8 9 10 12 14 14 15 15 16 17 18 18 18 LCS_GDT D 146 D 146 5 6 16 3 5 5 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT D 147 D 147 5 6 16 3 5 5 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT C 148 C 148 5 6 16 3 5 5 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT E 149 E 149 4 6 16 3 4 4 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT E 150 E 150 4 6 16 3 4 4 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT I 151 I 151 4 6 16 3 4 4 4 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT K 152 K 152 4 6 16 3 4 4 5 6 7 9 10 11 11 12 14 14 15 15 16 17 18 18 18 LCS_GDT V 153 V 153 3 6 16 3 3 3 5 6 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT P 154 P 154 3 6 16 3 3 3 5 6 7 9 10 11 11 12 14 14 15 15 16 17 18 18 18 LCS_GDT E 155 E 155 3 5 16 3 3 3 4 5 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT C 156 C 156 4 5 16 3 3 4 4 6 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT P 157 P 157 4 5 16 3 3 4 4 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT A 158 A 158 4 5 16 3 3 4 4 4 6 7 8 8 8 8 9 12 15 15 16 17 18 18 18 LCS_GDT G 159 G 159 4 5 15 3 3 4 4 5 6 7 8 8 8 10 11 13 15 15 16 17 18 18 18 LCS_GDT F 160 F 160 3 3 15 3 3 3 3 3 3 4 8 8 8 9 9 13 15 15 15 17 18 18 18 LCS_AVERAGE LCS_A: 2.13 ( 1.01 1.40 3.99 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 GDT PERCENT_AT 0.78 1.30 1.30 1.30 1.81 1.81 2.33 2.59 2.85 3.11 3.11 3.63 3.63 3.89 3.89 4.15 4.40 4.66 4.66 4.66 GDT RMS_LOCAL 0.10 0.68 0.68 0.68 1.75 1.75 2.62 2.74 2.99 3.79 3.36 4.03 4.03 4.35 4.35 4.83 5.30 5.56 5.56 5.56 GDT RMS_ALL_AT 25.00 14.33 14.33 14.33 8.34 8.34 10.49 9.27 9.60 7.56 8.52 8.06 8.06 7.75 7.75 7.43 7.84 7.57 7.57 7.57 # Checking swapping # possible swapping detected: D 145 D 145 # possible swapping detected: D 147 D 147 # possible swapping detected: E 149 E 149 # possible swapping detected: E 155 E 155 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 141 S 141 23.459 0 0.144 0.177 25.190 0.000 0.000 LGA H 142 H 142 17.933 0 0.031 1.119 23.888 0.000 0.000 LGA W 143 W 143 11.071 0 0.575 0.470 13.573 0.238 3.027 LGA V 144 V 144 8.319 0 0.638 1.230 11.518 4.524 3.401 LGA D 145 D 145 7.889 0 0.173 1.301 10.798 12.143 6.369 LGA D 146 D 146 3.814 0 0.046 1.350 6.366 47.857 39.345 LGA D 147 D 147 0.732 0 0.669 1.131 3.605 72.024 70.417 LGA C 148 C 148 2.864 0 0.100 0.535 7.507 71.310 53.095 LGA E 149 E 149 2.876 0 0.084 1.164 12.102 55.952 28.042 LGA E 150 E 150 0.684 0 0.117 0.891 6.447 72.024 52.646 LGA I 151 I 151 2.749 0 0.272 0.857 6.958 69.286 44.583 LGA K 152 K 152 3.675 0 0.638 0.823 13.704 55.595 27.143 LGA V 153 V 153 3.484 0 0.705 1.431 6.884 50.119 44.014 LGA P 154 P 154 5.254 0 0.089 0.209 9.352 38.095 24.014 LGA E 155 E 155 2.041 0 0.191 0.549 7.796 63.333 40.000 LGA C 156 C 156 2.433 0 0.578 0.620 6.080 55.238 49.206 LGA P 157 P 157 6.502 0 0.037 0.064 7.395 18.452 24.898 LGA A 158 A 158 11.891 0 0.376 0.384 14.378 0.119 0.095 LGA G 159 G 159 12.143 0 0.607 0.607 13.020 0.000 0.000 LGA F 160 F 160 12.557 0 0.129 1.167 15.786 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 80 100.00 158 158 100.00 386 SUMMARY(RMSD_GDC): 7.050 6.996 7.872 1.778 1.322 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 386 4.0 10 2.74 2.332 2.154 0.352 LGA_LOCAL RMSD: 2.744 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.267 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 7.050 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.048968 * X + 0.998528 * Y + -0.023319 * Z + -56.778076 Y_new = -0.572191 * X + 0.008909 * Y + -0.820072 * Z + 141.898972 Z_new = -0.818657 * X + 0.053501 * Y + 0.571785 * Z + 42.287060 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.485424 0.959069 0.093296 [DEG: -85.1085 54.9506 5.3455 ] ZXZ: -0.028428 0.962116 -1.505537 [DEG: -1.6288 55.1252 -86.2609 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS206_1_5-D3 REMARK 2: T0543-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS206_1_5-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 386 4.0 10 2.74 2.154 7.05 REMARK ---------------------------------------------------------- MOLECULE T0543TS206_1_5-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 5 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 1OGM_X ATOM 2080 N SER 141 -2.691 57.140 13.405 1.00 99.90 N ATOM 2081 H SER 141 -3.541 57.006 13.936 1.00 99.90 H ATOM 2082 CA SER 141 -2.674 58.133 12.340 1.00 99.90 C ATOM 2083 HA SER 141 -1.738 58.686 12.411 1.00 99.90 H ATOM 2084 CB SER 141 -2.689 57.465 10.961 1.00 99.90 C ATOM 2085 HB2 SER 141 -2.679 58.249 10.205 1.00 99.90 H ATOM 2086 HB3 SER 141 -1.806 56.835 10.861 1.00 99.90 H ATOM 2087 OG SER 141 -3.864 56.702 10.779 1.00 99.90 O ATOM 2088 HG SER 141 -3.848 55.955 11.383 1.00 99.90 H ATOM 2089 C SER 141 -3.799 59.139 12.445 1.00 99.90 C ATOM 2090 O SER 141 -4.999 58.813 12.540 1.00 99.90 O ATOM 2091 N HIS 142 -3.440 60.409 12.307 1.00 99.90 N ATOM 2092 H HIS 142 -2.454 60.624 12.252 1.00 99.90 H ATOM 2093 CA HIS 142 -4.316 61.565 12.313 1.00 99.90 C ATOM 2094 HA HIS 142 -5.333 61.261 12.065 1.00 99.90 H ATOM 2095 CB HIS 142 -4.248 62.246 13.692 1.00 99.90 C ATOM 2096 HB2 HIS 142 -3.259 62.658 13.891 1.00 99.90 H ATOM 2097 HB3 HIS 142 -4.959 63.072 13.702 1.00 99.90 H ATOM 2098 CG HIS 142 -4.595 61.340 14.854 1.00 99.90 C ATOM 2099 ND1 HIS 142 -3.761 61.081 15.946 1.00 99.90 N ATOM 2100 CE1 HIS 142 -4.454 60.220 16.744 1.00 99.90 C ATOM 2101 HE1 HIS 142 -4.056 59.788 17.651 1.00 99.90 H ATOM 2102 NE2 HIS 142 -5.663 59.963 16.198 1.00 99.90 N ATOM 2103 HE2 HIS 142 -6.356 59.345 16.597 1.00 99.90 H ATOM 2104 CD2 HIS 142 -5.764 60.659 15.027 1.00 99.90 C ATOM 2105 HD2 HIS 142 -6.634 60.650 14.386 1.00 99.90 H ATOM 2106 C HIS 142 -3.900 62.513 11.185 1.00 99.90 C ATOM 2107 O HIS 142 -2.702 62.599 10.849 1.00 99.90 O ATOM 2108 N TRP 143 -4.830 63.215 10.556 1.00 99.90 N ATOM 2109 H TRP 143 -5.795 63.122 10.840 1.00 99.90 H ATOM 2110 CA TRP 143 -4.525 64.139 9.454 1.00 99.90 C ATOM 2111 HA TRP 143 -3.570 64.634 9.633 1.00 99.90 H ATOM 2112 CB TRP 143 -4.325 63.298 8.172 1.00 99.90 C ATOM 2113 HB2 TRP 143 -3.536 62.570 8.360 1.00 99.90 H ATOM 2114 HB3 TRP 143 -5.211 62.694 7.975 1.00 99.90 H ATOM 2115 CG TRP 143 -3.986 64.027 6.909 1.00 99.90 C ATOM 2116 CD1 TRP 143 -2.835 64.684 6.643 1.00 99.90 C ATOM 2117 HD1 TRP 143 -2.026 64.765 7.356 1.00 99.90 H ATOM 2118 NE1 TRP 143 -2.824 65.163 5.352 1.00 99.90 N ATOM 2119 HE1 TRP 143 -2.046 65.675 4.961 1.00 99.90 H ATOM 2120 CE2 TRP 143 -4.015 64.873 4.726 1.00 99.90 C ATOM 2121 CZ2 TRP 143 -4.453 65.089 3.416 1.00 99.90 C ATOM 2122 HZ2 TRP 143 -3.815 65.586 2.702 1.00 99.90 H ATOM 2123 CH2 TRP 143 -5.730 64.671 3.064 1.00 99.90 H ATOM 2124 HH2 TRP 143 -6.033 64.822 2.038 1.00 99.90 H ATOM 2125 CZ3 TRP 143 -6.584 64.061 4.009 1.00 99.90 C ATOM 2126 HZ3 TRP 143 -7.559 63.716 3.697 1.00 99.90 H ATOM 2127 CE3 TRP 143 -6.132 63.837 5.327 1.00 99.90 C ATOM 2128 HE3 TRP 143 -6.758 63.318 6.037 1.00 99.90 H ATOM 2129 CD2 TRP 143 -4.811 64.218 5.710 1.00 99.90 C ATOM 2130 C TRP 143 -5.651 65.171 9.248 1.00 99.90 C ATOM 2131 O TRP 143 -6.694 64.863 8.668 1.00 99.90 O ATOM 2132 N VAL 144 -5.376 66.407 9.653 1.00 99.90 N ATOM 2133 H VAL 144 -4.516 66.546 10.165 1.00 99.90 H ATOM 2134 CA VAL 144 -6.252 67.585 9.478 1.00 99.90 C ATOM 2135 HA VAL 144 -6.868 67.440 8.590 1.00 99.90 H ATOM 2136 CB VAL 144 -7.234 67.764 10.666 1.00 99.90 C ATOM 2137 HB VAL 144 -7.689 68.752 10.588 1.00 99.90 H ATOM 2138 CG1 VAL 144 -8.390 66.743 10.648 1.00 99.90 C ATOM 2139 HG11 VAL 144 -8.961 66.881 9.731 1.00 99.90 H ATOM 2140 HG12 VAL 144 -7.988 65.734 10.742 1.00 99.90 H ATOM 2141 HG13 VAL 144 -9.080 66.908 11.475 1.00 99.90 H ATOM 2142 CG2 VAL 144 -6.551 67.699 12.040 1.00 99.90 C ATOM 2143 HG21 VAL 144 -6.195 66.686 12.228 1.00 99.90 H ATOM 2144 HG22 VAL 144 -5.725 68.410 12.086 1.00 99.90 H ATOM 2145 HG23 VAL 144 -7.264 67.998 12.808 1.00 99.90 H ATOM 2146 C VAL 144 -5.476 68.887 9.203 1.00 99.90 C ATOM 2147 O VAL 144 -4.519 69.205 9.887 1.00 99.90 O ATOM 2148 N ASP 145 -5.851 69.608 8.140 1.00 99.90 N ATOM 2149 H ASP 145 -6.705 69.314 7.686 1.00 99.90 H ATOM 2150 CA ASP 145 -5.226 70.875 7.685 1.00 99.90 C ATOM 2151 HA ASP 145 -5.094 71.498 8.569 1.00 99.90 H ATOM 2152 CB ASP 145 -3.855 70.588 7.049 1.00 99.90 C ATOM 2153 HB2 ASP 145 -3.207 70.014 7.711 1.00 99.90 H ATOM 2154 HB3 ASP 145 -4.007 69.958 6.172 1.00 99.90 H ATOM 2155 CG ASP 145 -3.135 71.865 6.661 1.00 99.90 C ATOM 2156 OD1 ASP 145 -2.498 72.523 7.522 1.00 99.90 O ATOM 2157 OD2 ASP 145 -3.158 72.207 5.452 1.00 99.90 O ATOM 2158 C ASP 145 -6.144 71.603 6.665 1.00 99.90 C ATOM 2159 O ASP 145 -6.224 72.835 6.663 1.00 99.90 O ATOM 2160 N ASP 146 -6.867 70.860 5.836 1.00 99.90 N ATOM 2161 H ASP 146 -6.742 69.858 5.838 1.00 99.90 H ATOM 2162 CA ASP 146 -7.756 71.450 4.828 1.00 99.90 C ATOM 2163 HA ASP 146 -7.324 72.397 4.505 1.00 99.90 H ATOM 2164 CB ASP 146 -7.753 70.562 3.568 1.00 99.90 C ATOM 2165 HB2 ASP 146 -6.729 70.425 3.222 1.00 99.90 H ATOM 2166 HB3 ASP 146 -8.234 69.605 3.768 1.00 99.90 H ATOM 2167 CG ASP 146 -8.532 71.244 2.446 1.00 99.90 C ATOM 2168 OD1 ASP 146 -9.757 70.958 2.268 1.00 99.90 O ATOM 2169 OD2 ASP 146 -7.951 72.129 1.769 1.00 99.90 O ATOM 2170 C ASP 146 -9.198 71.771 5.337 1.00 99.90 C ATOM 2171 O ASP 146 -9.723 71.137 6.235 1.00 99.90 O ATOM 2172 N ASP 147 -9.847 72.788 4.724 1.00 99.90 N ATOM 2173 H ASP 147 -9.389 73.223 3.937 1.00 99.90 H ATOM 2174 CA ASP 147 -11.191 73.287 4.978 1.00 99.90 C ATOM 2175 HA ASP 147 -11.209 73.663 6.001 1.00 99.90 H ATOM 2176 CB ASP 147 -11.455 74.486 4.073 1.00 99.90 C ATOM 2177 HB2 ASP 147 -10.647 75.215 4.130 1.00 99.90 H ATOM 2178 HB3 ASP 147 -11.486 74.116 3.047 1.00 99.90 H ATOM 2179 CG ASP 147 -12.745 75.236 4.384 1.00 99.90 C ATOM 2180 OD1 ASP 147 -13.725 75.110 3.607 1.00 99.90 O ATOM 2181 OD2 ASP 147 -12.825 75.954 5.407 1.00 99.90 O ATOM 2182 C ASP 147 -12.309 72.212 4.909 1.00 99.90 C ATOM 2183 O ASP 147 -13.312 72.348 5.599 1.00 99.90 O ATOM 2184 N CYS 148 -12.112 71.113 4.191 1.00 99.90 N ATOM 2185 H CYS 148 -11.282 71.069 3.617 1.00 99.90 H ATOM 2186 CA CYS 148 -12.933 69.904 4.253 1.00 99.90 C ATOM 2187 HA CYS 148 -13.741 70.054 4.969 1.00 99.90 H ATOM 2188 CB CYS 148 -13.671 69.731 2.949 1.00 99.90 C ATOM 2189 HB2 CYS 148 -14.350 68.878 2.971 1.00 99.90 H ATOM 2190 HB3 CYS 148 -14.277 70.622 2.780 1.00 99.90 H ATOM 2191 SG CYS 148 -12.592 69.508 1.505 1.00 99.90 S ATOM 2192 HG CYS 148 -11.676 70.428 1.815 1.00 99.90 H ATOM 2193 C CYS 148 -12.182 68.643 4.699 1.00 99.90 C ATOM 2194 O CYS 148 -10.984 68.522 4.482 1.00 99.90 O ATOM 2195 N GLU 149 -12.919 67.742 5.339 1.00 99.90 N ATOM 2196 H GLU 149 -13.917 67.859 5.442 1.00 99.90 H ATOM 2197 CA GLU 149 -12.364 66.575 6.017 1.00 99.90 C ATOM 2198 HA GLU 149 -11.334 66.779 6.313 1.00 99.90 H ATOM 2199 CB GLU 149 -13.100 66.284 7.378 1.00 99.90 C ATOM 2200 HB2 GLU 149 -14.154 66.060 7.215 1.00 99.90 H ATOM 2201 HB3 GLU 149 -12.610 65.444 7.871 1.00 99.90 H ATOM 2202 CG GLU 149 -13.055 67.474 8.349 1.00 99.90 C ATOM 2203 HG2 GLU 149 -12.032 67.651 8.683 1.00 99.90 H ATOM 2204 HG3 GLU 149 -13.385 68.378 7.838 1.00 99.90 H ATOM 2205 CD GLU 149 -13.975 67.201 9.561 1.00 99.90 C ATOM 2206 OE1 GLU 149 -15.037 67.843 9.729 1.00 99.90 O ATOM 2207 OE2 GLU 149 -13.662 66.302 10.374 1.00 99.90 O ATOM 2208 C GLU 149 -12.390 65.340 5.107 1.00 99.90 C ATOM 2209 O GLU 149 -13.422 64.985 4.542 1.00 99.90 O ATOM 2210 N GLU 150 -11.292 64.584 5.057 1.00 99.90 N ATOM 2211 H GLU 150 -10.501 64.923 5.585 1.00 99.90 H ATOM 2212 CA GLU 150 -11.199 63.282 4.418 1.00 99.90 C ATOM 2213 HA GLU 150 -12.175 62.799 4.471 1.00 99.90 H ATOM 2214 CB GLU 150 -10.766 63.420 2.927 1.00 99.90 C ATOM 2215 HB2 GLU 150 -9.890 64.064 2.855 1.00 99.90 H ATOM 2216 HB3 GLU 150 -10.421 62.445 2.583 1.00 99.90 H ATOM 2217 CG GLU 150 -11.861 63.900 1.987 1.00 99.90 C ATOM 2218 HG2 GLU 150 -12.810 63.426 2.237 1.00 99.90 H ATOM 2219 HG3 GLU 150 -12.022 64.975 2.080 1.00 99.90 H ATOM 2220 CD GLU 150 -11.520 63.624 0.499 1.00 99.90 C ATOM 2221 OE1 GLU 150 -12.378 63.934 -0.354 1.00 99.90 O ATOM 2222 OE2 GLU 150 -10.470 63.060 0.141 1.00 99.90 O ATOM 2223 C GLU 150 -10.171 62.363 5.096 1.00 99.90 C ATOM 2224 O GLU 150 -9.404 62.737 5.984 1.00 99.90 O ATOM 2225 N ILE 151 -10.161 61.095 4.711 1.00 99.90 N ATOM 2226 H ILE 151 -10.831 60.812 4.010 1.00 99.90 H ATOM 2227 CA ILE 151 -9.039 60.159 4.987 1.00 99.90 C ATOM 2228 HA ILE 151 -8.556 60.458 5.917 1.00 99.90 H ATOM 2229 CB ILE 151 -9.565 58.685 5.085 1.00 99.90 C ATOM 2230 HB ILE 151 -10.125 58.499 4.168 1.00 99.90 H ATOM 2231 CG2 ILE 151 -8.463 57.626 5.140 1.00 99.90 C ATOM 2232 HG21 ILE 151 -7.865 57.645 4.228 1.00 99.90 H ATOM 2233 HG22 ILE 151 -7.812 57.822 5.992 1.00 99.90 H ATOM 2234 HG23 ILE 151 -8.902 56.632 5.225 1.00 99.90 H ATOM 2235 CG1 ILE 151 -10.534 58.488 6.263 1.00 99.90 C ATOM 2236 HG12 ILE 151 -11.398 59.137 6.118 1.00 99.90 H ATOM 2237 HG13 ILE 151 -10.866 57.450 6.246 1.00 99.90 H ATOM 2238 CD1 ILE 151 -10.002 58.766 7.686 1.00 99.90 C ATOM 2239 HD11 ILE 151 -9.166 58.113 7.933 1.00 99.90 H ATOM 2240 HD12 ILE 151 -9.727 59.813 7.817 1.00 99.90 H ATOM 2241 HD13 ILE 151 -10.808 58.611 8.404 1.00 99.90 H ATOM 2242 C ILE 151 -7.998 60.381 3.900 1.00 99.90 C ATOM 2243 O ILE 151 -8.380 60.713 2.781 1.00 99.90 O ATOM 2244 N LYS 152 -6.725 60.219 4.253 1.00 99.90 N ATOM 2245 H LYS 152 -6.570 59.943 5.213 1.00 99.90 H ATOM 2246 CA LYS 152 -5.572 60.671 3.448 1.00 99.90 C ATOM 2247 HA LYS 152 -5.671 61.744 3.280 1.00 99.90 H ATOM 2248 CB LYS 152 -4.291 60.503 4.290 1.00 99.90 C ATOM 2249 HB2 LYS 152 -4.457 61.049 5.218 1.00 99.90 H ATOM 2250 HB3 LYS 152 -4.162 59.447 4.525 1.00 99.90 H ATOM 2251 CG LYS 152 -2.987 61.032 3.617 1.00 99.90 C ATOM 2252 HG2 LYS 152 -2.750 60.480 2.707 1.00 99.90 H ATOM 2253 HG3 LYS 152 -3.146 62.078 3.350 1.00 99.90 H ATOM 2254 CD LYS 152 -1.804 60.921 4.641 1.00 99.90 C ATOM 2255 HD2 LYS 152 -2.041 61.550 5.498 1.00 99.90 H ATOM 2256 HD3 LYS 152 -1.683 59.882 4.946 1.00 99.90 H ATOM 2257 CE LYS 152 -0.421 61.314 4.085 1.00 99.90 C ATOM 2258 HE2 LYS 152 -0.517 62.321 3.681 1.00 99.90 H ATOM 2259 HE3 LYS 152 0.295 61.346 4.906 1.00 99.90 H ATOM 2260 NZ LYS 152 0.094 60.369 3.065 1.00 99.90 N ATOM 2261 HZ1 LYS 152 1.102 60.413 3.000 1.00 99.90 H ATOM 2262 HZ2 LYS 152 -0.145 59.408 3.263 1.00 99.90 H ATOM 2263 HZ3 LYS 152 -0.266 60.575 2.145 1.00 99.90 H ATOM 2264 C LYS 152 -5.470 59.992 2.067 1.00 99.90 C ATOM 2265 O LYS 152 -5.489 58.760 1.966 1.00 99.90 O ATOM 2266 N VAL 153 -5.310 60.797 1.022 1.00 99.90 N ATOM 2267 H VAL 153 -5.427 61.782 1.215 1.00 99.90 H ATOM 2268 CA VAL 153 -4.722 60.398 -0.284 1.00 99.90 C ATOM 2269 HA VAL 153 -4.349 59.384 -0.145 1.00 99.90 H ATOM 2270 CB VAL 153 -5.725 60.297 -1.432 1.00 99.90 C ATOM 2271 HB VAL 153 -5.198 59.898 -2.298 1.00 99.90 H ATOM 2272 CG1 VAL 153 -6.789 59.234 -1.084 1.00 99.90 C ATOM 2273 HG11 VAL 153 -7.380 59.585 -0.238 1.00 99.90 H ATOM 2274 HG12 VAL 153 -7.441 59.102 -1.947 1.00 99.90 H ATOM 2275 HG13 VAL 153 -6.297 58.281 -0.886 1.00 99.90 H ATOM 2276 CG2 VAL 153 -6.348 61.635 -1.891 1.00 99.90 C ATOM 2277 HG21 VAL 153 -5.586 62.346 -2.209 1.00 99.90 H ATOM 2278 HG22 VAL 153 -6.960 61.469 -2.778 1.00 99.90 H ATOM 2279 HG23 VAL 153 -6.987 62.034 -1.102 1.00 99.90 H ATOM 2280 C VAL 153 -3.509 61.185 -0.740 1.00 99.90 C ATOM 2281 O VAL 153 -2.734 60.617 -1.499 1.00 99.90 O ATOM 2282 N PRO 154 -3.231 62.428 -0.316 1.00 99.90 N ATOM 2283 CD PRO 154 -4.181 63.431 0.211 1.00 99.90 C ATOM 2284 HD2 PRO 154 -4.100 63.416 1.299 1.00 99.90 H ATOM 2285 HD3 PRO 154 -5.209 63.235 -0.090 1.00 99.90 H ATOM 2286 CG PRO 154 -3.716 64.790 -0.356 1.00 99.90 C ATOM 2287 HG2 PRO 154 -4.048 65.651 0.224 1.00 99.90 H ATOM 2288 HG3 PRO 154 -3.993 64.890 -1.404 1.00 99.90 H ATOM 2289 CB PRO 154 -2.217 64.587 -0.280 1.00 99.90 C ATOM 2290 HB2 PRO 154 -1.942 64.761 0.761 1.00 99.90 H ATOM 2291 HB3 PRO 154 -1.631 65.232 -0.935 1.00 99.90 H ATOM 2292 CA PRO 154 -1.996 63.113 -0.641 1.00 99.90 C ATOM 2293 HA PRO 154 -1.833 62.988 -1.711 1.00 99.90 H ATOM 2294 C PRO 154 -0.776 62.571 0.064 1.00 99.90 C ATOM 2295 O PRO 154 -0.917 61.900 1.071 1.00 99.90 O ATOM 2296 N GLU 155 0.397 62.962 -0.407 1.00 99.90 N ATOM 2297 H GLU 155 0.395 63.544 -1.232 1.00 99.90 H ATOM 2298 CA GLU 155 1.725 62.747 0.148 1.00 99.90 C ATOM 2299 HA GLU 155 2.382 63.296 -0.526 1.00 99.90 H ATOM 2300 CB GLU 155 1.866 63.391 1.531 1.00 99.90 C ATOM 2301 HB2 GLU 155 1.250 62.855 2.252 1.00 99.90 H ATOM 2302 HB3 GLU 155 2.900 63.289 1.864 1.00 99.90 H ATOM 2303 CG GLU 155 1.511 64.876 1.622 1.00 99.90 C ATOM 2304 HG2 GLU 155 2.138 65.406 0.906 1.00 99.90 H ATOM 2305 HG3 GLU 155 0.463 65.014 1.350 1.00 99.90 H ATOM 2306 CD GLU 155 1.833 65.388 3.023 1.00 99.90 C ATOM 2307 OE1 GLU 155 0.938 65.834 3.785 1.00 99.90 O ATOM 2308 OE2 GLU 155 3.050 65.407 3.361 1.00 99.90 O ATOM 2309 C GLU 155 2.248 61.309 0.139 1.00 99.90 C ATOM 2310 O GLU 155 1.566 60.395 0.578 1.00 99.90 O ATOM 2311 N CYS 156 3.512 61.101 -0.227 1.00 99.90 N ATOM 2312 H CYS 156 4.059 61.875 -0.576 1.00 99.90 H ATOM 2313 CA CYS 156 4.126 59.765 -0.310 1.00 99.90 C ATOM 2314 HA CYS 156 3.409 59.090 -0.775 1.00 99.90 H ATOM 2315 CB CYS 156 5.374 59.794 -1.176 1.00 99.90 C ATOM 2316 HB2 CYS 156 6.050 60.547 -0.771 1.00 99.90 H ATOM 2317 HB3 CYS 156 5.906 58.844 -1.121 1.00 99.90 H ATOM 2318 SG CYS 156 5.040 60.214 -2.922 1.00 99.90 S ATOM 2319 HG CYS 156 4.354 59.102 -3.200 1.00 99.90 H ATOM 2320 C CYS 156 4.399 59.164 1.117 1.00 99.90 C ATOM 2321 O CYS 156 3.949 58.039 1.385 1.00 99.90 O ATOM 2322 N PRO 157 5.005 59.922 2.051 1.00 99.90 N ATOM 2323 CD PRO 157 5.912 61.025 1.853 1.00 99.90 C ATOM 2324 HD2 PRO 157 5.412 61.875 1.388 1.00 99.90 H ATOM 2325 HD3 PRO 157 6.729 60.680 1.220 1.00 99.90 H ATOM 2326 CG PRO 157 6.449 61.426 3.199 1.00 99.90 C ATOM 2327 HG2 PRO 157 5.838 62.223 3.623 1.00 99.90 H ATOM 2328 HG3 PRO 157 7.492 61.726 3.101 1.00 99.90 H ATOM 2329 CB PRO 157 6.291 60.212 4.056 1.00 99.90 C ATOM 2330 HB2 PRO 157 6.228 60.505 5.104 1.00 99.90 H ATOM 2331 HB3 PRO 157 7.078 59.481 3.874 1.00 99.90 H ATOM 2332 CA PRO 157 5.009 59.598 3.469 1.00 99.90 C ATOM 2333 HA PRO 157 5.062 58.514 3.565 1.00 99.90 H ATOM 2334 C PRO 157 3.748 60.140 4.186 1.00 99.90 C ATOM 2335 O PRO 157 2.984 60.943 3.634 1.00 99.90 O ATOM 2336 N ALA 158 3.556 59.729 5.461 1.00 99.90 N ATOM 2337 H ALA 158 4.221 59.106 5.898 1.00 99.90 H ATOM 2338 CA ALA 158 2.530 60.240 6.364 1.00 99.90 C ATOM 2339 HA ALA 158 2.121 61.135 5.894 1.00 99.90 H ATOM 2340 CB ALA 158 1.426 59.176 6.437 1.00 99.90 C ATOM 2341 HB1 ALA 158 1.070 58.961 5.428 1.00 99.90 H ATOM 2342 HB2 ALA 158 1.801 58.242 6.855 1.00 99.90 H ATOM 2343 HB3 ALA 158 0.577 59.494 7.043 1.00 99.90 H ATOM 2344 C ALA 158 3.124 60.666 7.713 1.00 99.90 C ATOM 2345 O ALA 158 2.814 60.070 8.757 1.00 99.90 O ATOM 2346 N GLY 159 4.011 61.662 7.702 1.00 99.90 N ATOM 2347 H GLY 159 4.217 62.127 6.829 1.00 99.90 H ATOM 2348 CA GLY 159 4.784 62.073 8.883 1.00 99.90 C ATOM 2349 HA2 GLY 159 5.349 61.223 9.265 1.00 99.90 H ATOM 2350 HA3 GLY 159 5.518 62.832 8.611 1.00 99.90 H ATOM 2351 C GLY 159 3.887 62.625 10.009 1.00 99.90 C ATOM 2352 O GLY 159 3.231 63.631 9.826 1.00 99.90 O ATOM 2353 N PHE 160 3.826 61.931 11.154 1.00 99.90 N ATOM 2354 H PHE 160 4.405 61.104 11.181 1.00 99.90 H ATOM 2355 CA PHE 160 2.947 62.243 12.287 1.00 99.90 C ATOM 2356 HA PHE 160 2.440 63.200 12.159 1.00 99.90 H ATOM 2357 CB PHE 160 1.807 61.210 12.370 1.00 99.90 C ATOM 2358 HB2 PHE 160 1.170 61.285 11.488 1.00 99.90 H ATOM 2359 HB3 PHE 160 2.188 60.188 12.338 1.00 99.90 H ATOM 2360 CG PHE 160 0.935 61.364 13.595 1.00 99.90 C ATOM 2361 CD1 PHE 160 0.118 62.503 13.717 1.00 99.90 C ATOM 2362 HD1 PHE 160 0.057 63.185 12.883 1.00 99.90 H ATOM 2363 CE1 PHE 160 -0.621 62.746 14.888 1.00 99.90 C ATOM 2364 HE1 PHE 160 -1.273 63.603 14.969 1.00 99.90 H ATOM 2365 CZ PHE 160 -0.525 61.839 15.937 1.00 99.90 C ATOM 2366 HZ PHE 160 -1.149 62.040 16.796 1.00 99.90 H ATOM 2367 CE2 PHE 160 0.246 60.666 15.824 1.00 99.90 C ATOM 2368 HE2 PHE 160 0.247 59.968 16.648 1.00 99.90 H ATOM 2369 CD2 PHE 160 0.997 60.417 14.661 1.00 99.90 C ATOM 2370 HD2 PHE 160 1.568 59.506 14.550 1.00 99.90 H ATOM 2371 C PHE 160 3.727 62.293 13.587 1.00 99.90 C ATOM 2372 O PHE 160 4.541 61.428 13.888 1.00 99.90 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 158 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 88.87 39.5 38 5.0 767 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 306 ARMSMC SURFACE . . . . . . . . 88.59 42.4 33 9.5 347 ARMSMC BURIED . . . . . . . . 90.69 20.0 5 1.2 420 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.13 44.4 18 5.4 334 ARMSSC1 RELIABLE SIDE CHAINS . 77.68 50.0 16 5.2 310 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 132 ARMSSC1 SURFACE . . . . . . . . 89.80 40.0 15 9.4 159 ARMSSC1 BURIED . . . . . . . . 64.72 66.7 3 1.7 175 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.74 53.8 13 5.3 247 ARMSSC2 RELIABLE SIDE CHAINS . 53.76 58.3 12 6.6 183 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 67.79 50.0 10 8.5 118 ARMSSC2 BURIED . . . . . . . . 79.79 66.7 3 2.3 129 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 67.79 25.0 4 5.6 71 ARMSSC3 RELIABLE SIDE CHAINS . 67.79 25.0 4 6.6 61 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC3 SURFACE . . . . . . . . 67.79 25.0 4 9.1 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 107.41 0.0 1 3.1 32 ARMSSC4 RELIABLE SIDE CHAINS . 107.41 0.0 1 3.1 32 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 107.41 0.0 1 4.5 22 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.05 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.05 20 5.2 386 CRMSCA CRN = ALL/NP . . . . . 0.3525 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSCA SURFACE . . . . . . . . 6.83 17 9.7 176 CRMSCA BURIED . . . . . . . . 8.18 3 1.4 210 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.14 99 5.2 1902 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 758 CRMSMC SURFACE . . . . . . . . 6.91 84 9.6 872 CRMSMC BURIED . . . . . . . . 8.30 15 1.5 1030 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.69 78 4.9 1592 CRMSSC RELIABLE SIDE CHAINS . 8.67 70 5.2 1352 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 633 CRMSSC SURFACE . . . . . . . . 8.67 57 7.5 764 CRMSSC BURIED . . . . . . . . 8.77 21 2.5 828 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.88 158 5.0 3136 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 1245 CRMSALL SURFACE . . . . . . . . 7.67 125 8.5 1468 CRMSALL BURIED . . . . . . . . 8.65 33 2.0 1668 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.661 0.884 0.892 20 5.2 386 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRCA SURFACE . . . . . . . . 93.911 0.889 0.896 17 9.7 176 ERRCA BURIED . . . . . . . . 92.246 0.859 0.869 3 1.4 210 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.629 0.884 0.892 99 5.2 1902 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 758 ERRMC SURFACE . . . . . . . . 93.871 0.888 0.895 84 9.6 872 ERRMC BURIED . . . . . . . . 92.275 0.860 0.870 15 1.5 1030 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.883 0.853 0.865 78 4.9 1592 ERRSC RELIABLE SIDE CHAINS . 91.954 0.855 0.866 70 5.2 1352 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 633 ERRSC SURFACE . . . . . . . . 92.060 0.857 0.868 57 7.5 764 ERRSC BURIED . . . . . . . . 91.403 0.844 0.856 21 2.5 828 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.839 0.870 0.879 158 5.0 3136 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1245 ERRALL SURFACE . . . . . . . . 93.142 0.875 0.884 125 8.5 1468 ERRALL BURIED . . . . . . . . 91.690 0.849 0.861 33 2.0 1668 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 8 18 20 386 DISTCA CA (P) 0.00 0.26 0.78 2.07 4.66 386 DISTCA CA (RMS) 0.00 1.93 2.47 3.44 5.90 DISTCA ALL (N) 1 4 16 56 123 158 3136 DISTALL ALL (P) 0.03 0.13 0.51 1.79 3.92 3136 DISTALL ALL (RMS) 0.93 1.51 2.32 3.66 6.04 DISTALL END of the results output