####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 22 ( 315), selected 22 , name T0543TS206_1_5 # Molecule2: number of CA atoms 784 ( 6318), selected 22 , name T0543.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS206_1_5.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 143 - 158 4.85 10.50 LCS_AVERAGE: 1.94 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 139 - 144 1.66 13.38 LONGEST_CONTINUOUS_SEGMENT: 6 143 - 148 1.46 14.10 LONGEST_CONTINUOUS_SEGMENT: 6 146 - 151 1.88 11.60 LONGEST_CONTINUOUS_SEGMENT: 6 147 - 152 1.96 13.95 LONGEST_CONTINUOUS_SEGMENT: 6 149 - 154 1.89 16.13 LCS_AVERAGE: 0.72 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 144 - 148 0.64 15.17 LCS_AVERAGE: 0.49 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 22 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 139 G 139 4 6 12 3 3 4 5 6 6 6 8 9 9 11 11 11 11 12 13 13 14 14 18 LCS_GDT E 140 E 140 4 6 12 3 3 4 5 6 6 6 8 9 9 11 11 11 12 13 14 16 16 18 18 LCS_GDT S 141 S 141 4 6 12 3 3 4 5 6 6 6 8 9 9 11 11 11 12 13 14 16 16 18 18 LCS_GDT H 142 H 142 4 6 12 3 3 4 5 6 6 6 8 9 9 11 11 14 14 15 15 17 17 18 18 LCS_GDT W 143 W 143 3 6 16 3 3 3 5 6 6 7 8 9 12 12 13 14 15 15 16 17 18 18 18 LCS_GDT V 144 V 144 5 6 16 3 5 5 5 6 6 7 8 9 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT D 145 D 145 5 6 16 3 5 5 5 6 6 7 8 9 10 12 14 14 15 15 16 17 18 18 18 LCS_GDT D 146 D 146 5 6 16 3 5 5 5 7 7 8 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT D 147 D 147 5 6 16 3 5 5 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT C 148 C 148 5 6 16 3 5 5 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT E 149 E 149 4 6 16 3 4 4 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT E 150 E 150 4 6 16 3 4 4 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT I 151 I 151 4 6 16 3 4 4 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT K 152 K 152 4 6 16 3 4 4 5 6 7 9 9 11 11 12 14 14 15 15 16 17 18 18 18 LCS_GDT V 153 V 153 3 6 16 3 3 3 5 6 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT P 154 P 154 3 6 16 3 3 3 5 6 7 9 9 11 11 12 14 14 15 15 16 17 18 18 18 LCS_GDT E 155 E 155 3 5 16 3 3 4 5 6 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT C 156 C 156 3 5 16 3 3 4 5 6 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT P 157 P 157 3 5 16 3 4 4 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 LCS_GDT A 158 A 158 3 5 16 3 3 4 4 4 5 7 8 8 8 8 9 12 15 15 16 17 18 18 18 LCS_GDT G 159 G 159 3 5 15 3 3 4 4 5 5 7 8 8 8 10 11 14 15 15 16 17 18 18 18 LCS_GDT F 160 F 160 3 3 15 3 3 3 3 3 3 4 8 8 8 9 9 14 15 15 15 17 18 18 18 LCS_AVERAGE LCS_A: 1.05 ( 0.49 0.72 1.94 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 5 5 7 7 9 10 11 12 12 14 14 15 15 16 17 18 18 18 GDT PERCENT_AT 0.38 0.64 0.64 0.64 0.89 0.89 1.15 1.28 1.40 1.53 1.53 1.79 1.79 1.91 1.91 2.04 2.17 2.30 2.30 2.30 GDT RMS_LOCAL 0.02 0.64 0.64 0.64 1.76 1.76 2.56 2.84 3.03 3.80 3.38 4.04 4.04 4.36 4.36 4.85 5.31 5.57 5.57 5.57 GDT RMS_ALL_AT 19.90 15.17 15.17 15.17 11.71 11.71 13.39 11.79 12.14 10.57 12.23 11.49 11.49 10.90 10.90 10.50 11.33 10.91 10.91 10.91 # Checking swapping # possible swapping detected: D 146 D 146 # possible swapping detected: D 147 D 147 # possible swapping detected: E 149 E 149 # possible swapping detected: E 155 E 155 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 139 G 139 32.229 0 0.248 0.248 32.229 0.000 0.000 LGA E 140 E 140 25.905 0 0.114 0.985 27.979 0.000 0.000 LGA S 141 S 141 21.274 0 0.151 0.182 22.792 0.000 0.000 LGA H 142 H 142 15.620 0 0.030 1.116 20.950 0.000 0.000 LGA W 143 W 143 9.229 0 0.585 0.486 11.471 2.738 4.796 LGA V 144 V 144 7.118 0 0.631 1.252 10.026 10.119 8.639 LGA D 145 D 145 7.012 0 0.176 0.959 9.604 18.095 9.821 LGA D 146 D 146 3.503 0 0.054 0.952 6.993 51.071 38.571 LGA D 147 D 147 0.770 0 0.677 1.139 3.669 72.024 73.512 LGA C 148 C 148 2.539 0 0.073 0.534 7.013 73.690 56.984 LGA E 149 E 149 3.211 0 0.090 1.151 12.454 55.714 27.196 LGA E 150 E 150 1.356 0 0.123 0.921 5.747 62.024 52.540 LGA I 151 I 151 2.343 0 0.274 0.861 5.585 72.976 52.500 LGA K 152 K 152 4.878 0 0.602 0.837 14.771 42.024 20.106 LGA V 153 V 153 3.742 0 0.713 1.442 6.895 43.452 40.204 LGA P 154 P 154 6.355 0 0.100 0.171 10.191 29.762 18.095 LGA E 155 E 155 3.117 0 0.189 0.527 7.671 54.167 35.926 LGA C 156 C 156 2.802 0 0.568 0.595 8.005 63.214 48.175 LGA P 157 P 157 3.493 0 0.041 0.078 4.921 48.571 55.986 LGA A 158 A 158 9.588 0 0.360 0.376 11.928 2.857 2.286 LGA G 159 G 159 10.244 0 0.619 0.619 12.092 0.119 0.119 LGA F 160 F 160 11.076 0 0.111 1.176 13.038 0.000 0.043 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 22 88 88 100.00 171 171 100.00 784 SUMMARY(RMSD_GDC): 8.467 8.460 8.847 0.896 0.696 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 22 784 4.0 10 2.84 1.148 1.068 0.340 LGA_LOCAL RMSD: 2.841 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.786 Number of assigned atoms: 22 Std_ASGN_ATOMS RMSD: 8.467 Standard rmsd on all 22 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.013026 * X + 0.975532 * Y + 0.219473 * Z + -60.105877 Y_new = -0.679720 * X + 0.152340 * Y + -0.717477 * Z + 139.992355 Z_new = -0.733356 * X + -0.158526 * Y + 0.661103 * Z + 41.860199 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.589958 0.823246 -0.235347 [DEG: -91.0979 47.1685 -13.4844 ] ZXZ: 0.296857 0.848508 -1.783686 [DEG: 17.0087 48.6159 -102.1977 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS206_1_5 REMARK 2: T0543.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS206_1_5.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 22 784 4.0 10 2.84 1.068 8.47 REMARK ---------------------------------------------------------- MOLECULE T0543TS206_1_5 REMARK PARENT number 5 PFRMAT TS TARGET T0543 PARENT 1OGM_X ATOM 2058 N GLY 139 3.958 55.666 12.254 1.00 99.9 ATOM 2059 H GLY 139 4.910 55.808 11.948 1.00 99.9 ATOM 2060 CA GLY 139 3.721 55.231 13.628 1.00 99.9 ATOM 2061 HA2 GLY 139 3.191 54.278 13.618 1.00 99.9 ATOM 2062 HA3 GLY 139 4.697 55.126 14.102 1.00 99.9 ATOM 2063 C GLY 139 2.918 56.262 14.445 1.00 99.9 ATOM 2064 O GLY 139 2.042 55.876 15.214 1.00 99.9 ATOM 2065 N GLU 140 3.162 57.550 14.210 1.00 99.9 ATOM 2066 H GLU 140 3.936 57.769 13.600 1.00 99.9 ATOM 2067 CA GLU 140 2.223 58.649 14.485 1.00 99.9 ATOM 2068 HA GLU 140 1.288 58.274 14.899 1.00 99.9 ATOM 2069 CB GLU 140 2.836 59.550 15.585 1.00 99.9 ATOM 2070 HB2 GLU 140 3.007 58.954 16.482 1.00 99.9 ATOM 2071 HB3 GLU 140 3.803 59.908 15.232 1.00 99.9 ATOM 2072 CG GLU 140 2.027 60.776 15.929 1.00 99.9 ATOM 2073 HG2 GLU 140 2.199 61.532 15.163 1.00 99.9 ATOM 2074 HG3 GLU 140 0.955 60.594 16.000 1.00 99.9 ATOM 2075 CD GLU 140 2.505 61.334 17.260 1.00 99.9 ATOM 2076 OE1 GLU 140 1.768 61.193 18.283 1.00 99.9 ATOM 2077 OE2 GLU 140 3.639 61.889 17.353 1.00 99.9 ATOM 2078 C GLU 140 1.952 59.451 13.212 1.00 99.9 ATOM 2079 O GLU 140 2.863 59.632 12.422 1.00 99.9 ATOM 2080 N SER 141 0.716 59.915 13.015 1.00 99.9 ATOM 2081 H SER 141 0.015 59.751 13.725 1.00 99.9 ATOM 2082 CA SER 141 0.369 60.725 11.855 1.00 99.9 ATOM 2083 HA SER 141 1.198 61.404 11.660 1.00 99.9 ATOM 2084 CB SER 141 0.204 59.856 10.605 1.00 99.9 ATOM 2085 HB2 SER 141 -0.057 60.509 9.771 1.00 99.9 ATOM 2086 HB3 SER 141 1.144 59.344 10.400 1.00 99.9 ATOM 2087 OG SER 141 -0.843 58.922 10.768 1.00 99.9 ATOM 2088 HG SER 141 -0.591 58.287 11.443 1.00 99.9 ATOM 2089 C SER 141 -0.866 61.573 12.069 1.00 99.9 ATOM 2090 O SER 141 -1.956 61.106 12.453 1.00 99.9 ATOM 2091 N HIS 142 -0.751 62.843 11.702 1.00 99.9 ATOM 2092 H HIS 142 0.157 63.178 11.415 1.00 99.9 ATOM 2093 CA HIS 142 -1.788 63.857 11.748 1.00 99.9 ATOM 2094 HA HIS 142 -2.770 63.383 11.759 1.00 99.9 ATOM 2095 CB HIS 142 -1.575 64.745 12.987 1.00 99.9 ATOM 2096 HB2 HIS 142 -0.647 65.314 12.922 1.00 99.9 ATOM 2097 HB3 HIS 142 -2.397 65.459 13.044 1.00 99.9 ATOM 2098 CG HIS 142 -1.543 63.991 14.299 1.00 99.9 ATOM 2099 ND1 HIS 142 -0.487 64.019 15.216 1.00 99.9 ATOM 2100 CE1 HIS 142 -0.867 63.206 16.241 1.00 99.9 ATOM 2101 HE1 HIS 142 -0.240 62.977 17.091 1.00 99.9 ATOM 2102 NE2 HIS 142 -2.099 62.706 15.997 1.00 99.9 ATOM 2103 HE2 HIS 142 -2.593 62.069 16.606 1.00 99.9 ATOM 2104 CD2 HIS 142 -2.531 63.193 14.797 1.00 99.9 ATOM 2105 HD2 HIS 142 -3.492 62.967 14.358 1.00 99.9 ATOM 2106 C HIS 142 -1.753 64.667 10.449 1.00 99.9 ATOM 2107 O HIS 142 -0.671 64.861 9.862 1.00 99.9 ATOM 2108 N TRP 143 -2.887 65.131 9.948 1.00 99.9 ATOM 2109 H TRP 143 -3.753 64.953 10.437 1.00 99.9 ATOM 2110 CA TRP 143 -2.951 65.906 8.701 1.00 99.9 ATOM 2111 HA TRP 143 -2.074 66.548 8.613 1.00 99.9 ATOM 2112 CB TRP 143 -2.861 64.912 7.519 1.00 99.9 ATOM 2113 HB2 TRP 143 -1.942 64.336 7.626 1.00 99.9 ATOM 2114 HB3 TRP 143 -3.657 64.171 7.589 1.00 99.9 ATOM 2115 CG TRP 143 -2.890 65.477 6.133 1.00 99.9 ATOM 2116 CD1 TRP 143 -1.933 66.235 5.552 1.00 99.9 ATOM 2117 HD1 TRP 143 -1.029 66.534 6.064 1.00 99.9 ATOM 2118 NE1 TRP 143 -2.244 66.506 4.238 1.00 99.9 ATOM 2119 HE1 TRP 143 -1.649 67.052 3.632 1.00 99.9 ATOM 2120 CE2 TRP 143 -3.467 65.964 3.917 1.00 99.9 ATOM 2121 CZ2 TRP 143 -4.174 65.914 2.712 1.00 99.9 ATOM 2122 HZ2 TRP 143 -3.773 66.376 1.823 1.00 99.9 ATOM 2123 CH2 TRP 143 -5.409 65.277 2.689 1.00 99.9 ATOM 2124 HH2 TRP 143 -5.920 65.226 1.738 1.00 99.9 ATOM 2125 CZ3 TRP 143 -5.958 64.710 3.860 1.00 99.9 ATOM 2126 HZ3 TRP 143 -6.903 64.192 3.805 1.00 99.9 ATOM 2127 CE3 TRP 143 -5.235 64.756 5.072 1.00 99.9 ATOM 2128 HE3 TRP 143 -5.622 64.272 5.956 1.00 99.9 ATOM 2129 CD2 TRP 143 -3.946 65.367 5.119 1.00 99.9 ATOM 2130 C TRP 143 -4.249 66.732 8.609 1.00 99.9 ATOM 2131 O TRP 143 -5.318 66.200 8.303 1.00 99.9 ATOM 2132 N VAL 144 -4.109 68.041 8.791 1.00 99.9 ATOM 2133 H VAL 144 -3.203 68.373 9.090 1.00 99.9 ATOM 2134 CA VAL 144 -5.184 69.048 8.659 1.00 99.9 ATOM 2135 HA VAL 144 -5.924 68.685 7.945 1.00 99.9 ATOM 2136 CB VAL 144 -5.940 69.274 9.994 1.00 99.9 ATOM 2137 HB VAL 144 -6.557 70.167 9.892 1.00 99.9 ATOM 2138 CG1 VAL 144 -6.895 68.115 10.345 1.00 99.9 ATOM 2139 HG11 VAL 144 -7.643 68.031 9.558 1.00 99.9 ATOM 2140 HG12 VAL 144 -6.323 67.196 10.477 1.00 99.9 ATOM 2141 HG13 VAL 144 -7.435 68.311 11.272 1.00 99.9 ATOM 2142 CG2 VAL 144 -5.009 69.515 11.192 1.00 99.9 ATOM 2143 HG21 VAL 144 -4.463 68.601 11.425 1.00 99.9 ATOM 2144 HG22 VAL 144 -4.318 70.330 10.975 1.00 99.9 ATOM 2145 HG23 VAL 144 -5.603 69.830 12.049 1.00 99.9 ATOM 2146 C VAL 144 -4.697 70.385 8.067 1.00 99.9 ATOM 2147 O VAL 144 -3.694 70.932 8.491 1.00 99.9 ATOM 2148 N ASP 145 -5.379 70.876 7.025 1.00 99.9 ATOM 2149 H ASP 145 -6.242 70.402 6.801 1.00 99.9 ATOM 2150 CA ASP 145 -5.067 72.131 6.296 1.00 99.9 ATOM 2151 HA ASP 145 -4.874 72.895 7.049 1.00 99.9 ATOM 2152 CB ASP 145 -3.812 71.938 5.427 1.00 99.9 ATOM 2153 HB2 ASP 145 -2.965 71.565 6.006 1.00 99.9 ATOM 2154 HB3 ASP 145 -4.021 71.165 4.687 1.00 99.9 ATOM 2155 CG ASP 145 -3.397 73.225 4.743 1.00 99.9 ATOM 2156 OD1 ASP 145 -2.726 74.088 5.362 1.00 99.9 ATOM 2157 OD2 ASP 145 -3.703 73.370 3.532 1.00 99.9 ATOM 2158 C ASP 145 -6.267 72.561 5.409 1.00 99.9 ATOM 2159 O ASP 145 -6.547 73.756 5.272 1.00 99.9 ATOM 2160 N ASP 146 -7.001 71.608 4.849 1.00 99.9 ATOM 2161 H ASP 146 -6.715 70.644 4.949 1.00 99.9 ATOM 2162 CA ASP 146 -8.149 71.910 3.984 1.00 99.9 ATOM 2163 HA ASP 146 -7.946 72.845 3.463 1.00 99.9 ATOM 2164 CB ASP 146 -8.238 70.846 2.872 1.00 99.9 ATOM 2165 HB2 ASP 146 -7.289 70.797 2.338 1.00 99.9 ATOM 2166 HB3 ASP 146 -8.509 69.875 3.286 1.00 99.9 ATOM 2167 CG ASP 146 -9.315 71.234 1.863 1.00 99.9 ATOM 2168 OD1 ASP 146 -10.488 70.761 1.982 1.00 99.9 ATOM 2169 OD2 ASP 146 -9.025 72.075 0.974 1.00 99.9 ATOM 2170 C ASP 146 -9.502 72.106 4.741 1.00 99.9 ATOM 2171 O ASP 146 -9.737 71.553 5.800 1.00 99.9 ATOM 2172 N ASP 147 -10.412 72.919 4.156 1.00 99.9 ATOM 2173 H ASP 147 -10.188 73.286 3.243 1.00 99.9 ATOM 2174 CA ASP 147 -11.747 73.264 4.622 1.00 99.9 ATOM 2175 HA ASP 147 -11.634 73.788 5.572 1.00 99.9 ATOM 2176 CB ASP 147 -12.371 74.263 3.651 1.00 99.9 ATOM 2177 HB2 ASP 147 -11.696 75.095 3.447 1.00 99.9 ATOM 2178 HB3 ASP 147 -12.533 73.738 2.709 1.00 99.9 ATOM 2179 CG ASP 147 -13.683 74.870 4.130 1.00 99.9 ATOM 2180 OD1 ASP 147 -14.759 74.494 3.598 1.00 99.9 ATOM 2181 OD2 ASP 147 -13.686 75.719 5.050 1.00 99.9 ATOM 2182 C ASP 147 -12.667 72.051 4.923 1.00 99.9 ATOM 2183 O ASP 147 -13.530 72.154 5.786 1.00 99.9 ATOM 2184 N CYS 148 -12.431 70.891 4.321 1.00 99.9 ATOM 2185 H CYS 148 -11.729 70.871 3.596 1.00 99.9 ATOM 2186 CA CYS 148 -13.017 69.606 4.703 1.00 99.9 ATOM 2187 HA CYS 148 -13.689 69.753 5.549 1.00 99.9 ATOM 2188 CB CYS 148 -13.949 69.135 3.615 1.00 99.9 ATOM 2189 HB2 CYS 148 -14.462 68.211 3.885 1.00 99.9 ATOM 2190 HB3 CYS 148 -14.713 69.899 3.468 1.00 99.9 ATOM 2191 SG CYS 148 -13.140 68.840 2.016 1.00 99.9 ATOM 2192 HG CYS 148 -12.345 69.913 2.011 1.00 99.9 ATOM 2193 C CYS 148 -11.999 68.542 5.135 1.00 99.9 ATOM 2194 O CYS 148 -10.860 68.553 4.689 1.00 99.9 ATOM 2195 N GLU 149 -12.445 67.660 6.022 1.00 99.9 ATOM 2196 H GLU 149 -13.411 67.655 6.317 1.00 99.9 ATOM 2197 CA GLU 149 -11.588 66.697 6.708 1.00 99.9 ATOM 2198 HA GLU 149 -10.569 67.082 6.754 1.00 99.9 ATOM 2199 CB GLU 149 -11.997 66.522 8.218 1.00 99.9 ATOM 2200 HB2 GLU 149 -13.012 66.135 8.309 1.00 99.9 ATOM 2201 HB3 GLU 149 -11.292 65.843 8.698 1.00 99.9 ATOM 2202 CG GLU 149 -11.965 67.843 9.003 1.00 99.9 ATOM 2203 HG2 GLU 149 -10.941 68.207 9.091 1.00 99.9 ATOM 2204 HG3 GLU 149 -12.530 68.604 8.465 1.00 99.9 ATOM 2205 CD GLU 149 -12.583 67.639 10.405 1.00 99.9 ATOM 2206 OE1 GLU 149 -13.685 68.149 10.712 1.00 99.9 ATOM 2207 OE2 GLU 149 -11.980 66.927 11.240 1.00 99.9 ATOM 2208 C GLU 149 -11.582 65.344 5.984 1.00 99.9 ATOM 2209 O GLU 149 -12.630 64.770 5.696 1.00 99.9 ATOM 2210 N GLU 150 -10.405 64.746 5.799 1.00 99.9 ATOM 2211 H GLU 150 -9.595 65.267 6.103 1.00 99.9 ATOM 2212 CA GLU 150 -10.221 63.385 5.321 1.00 99.9 ATOM 2213 HA GLU 150 -11.077 62.789 5.637 1.00 99.9 ATOM 2214 CB GLU 150 -10.106 63.349 3.767 1.00 99.9 ATOM 2215 HB2 GLU 150 -9.377 64.087 3.433 1.00 99.9 ATOM 2216 HB3 GLU 150 -9.677 62.388 3.482 1.00 99.9 ATOM 2217 CG GLU 150 -11.422 63.525 3.025 1.00 99.9 ATOM 2218 HG2 GLU 150 -12.216 62.971 3.525 1.00 99.9 ATOM 2219 HG3 GLU 150 -11.736 64.569 3.016 1.00 99.9 ATOM 2220 CD GLU 150 -11.327 63.071 1.545 1.00 99.9 ATOM 2221 OE1 GLU 150 -12.369 63.127 0.859 1.00 99.9 ATOM 2222 OE2 GLU 150 -10.285 62.607 1.047 1.00 99.9 ATOM 2223 C GLU 150 -8.948 62.730 5.877 1.00 99.9 ATOM 2224 O GLU 150 -8.099 63.338 6.531 1.00 99.9 ATOM 2225 N ILE 151 -8.803 61.431 5.659 1.00 99.9 ATOM 2226 H ILE 151 -9.538 60.955 5.155 1.00 99.9 ATOM 2227 CA ILE 151 -7.511 60.709 5.807 1.00 99.9 ATOM 2228 HA ILE 151 -6.917 61.211 6.571 1.00 99.9 ATOM 2229 CB ILE 151 -7.761 59.211 6.195 1.00 99.9 ATOM 2230 HB ILE 151 -8.445 58.811 5.446 1.00 99.9 ATOM 2231 CG2 ILE 151 -6.510 58.332 6.149 1.00 99.9 ATOM 2232 HG21 ILE 151 -6.106 58.291 5.136 1.00 99.9 ATOM 2233 HG22 ILE 151 -5.751 58.744 6.814 1.00 99.9 ATOM 2234 HG23 ILE 151 -6.756 57.313 6.446 1.00 99.9 ATOM 2235 CG1 ILE 151 -8.445 59.069 7.565 1.00 99.9 ATOM 2236 HG12 ILE 151 -9.415 59.565 7.525 1.00 99.9 ATOM 2237 HG13 ILE 151 -8.599 58.005 7.747 1.00 99.9 ATOM 2238 CD1 ILE 151 -7.708 59.632 8.800 1.00 99.9 ATOM 2239 HD11 ILE 151 -6.744 59.145 8.945 1.00 99.9 ATOM 2240 HD12 ILE 151 -7.588 60.714 8.739 1.00 99.9 ATOM 2241 HD13 ILE 151 -8.327 59.483 9.684 1.00 99.9 ATOM 2242 C ILE 151 -6.745 60.900 4.508 1.00 99.9 ATOM 2243 O ILE 151 -7.379 61.000 3.461 1.00 99.9 ATOM 2244 N LYS 152 -5.419 60.969 4.603 1.00 99.9 ATOM 2245 H LYS 152 -5.042 60.868 5.535 1.00 99.9 ATOM 2246 CA LYS 152 -4.528 61.443 3.524 1.00 99.9 ATOM 2247 HA LYS 152 -4.831 62.454 3.249 1.00 99.9 ATOM 2248 CB LYS 152 -3.101 61.583 4.093 1.00 99.9 ATOM 2249 HB2 LYS 152 -3.176 62.237 4.960 1.00 99.9 ATOM 2250 HB3 LYS 152 -2.759 60.603 4.425 1.00 99.9 ATOM 2251 CG LYS 152 -2.052 62.173 3.101 1.00 99.9 ATOM 2252 HG2 LYS 152 -1.903 61.525 2.238 1.00 99.9 ATOM 2253 HG3 LYS 152 -2.427 63.134 2.747 1.00 99.9 ATOM 2254 CD LYS 152 -0.695 62.383 3.860 1.00 99.9 ATOM 2255 HD2 LYS 152 -0.867 63.099 4.663 1.00 99.9 ATOM 2256 HD3 LYS 152 -0.350 61.429 4.260 1.00 99.9 ATOM 2257 CE LYS 152 0.474 62.869 2.983 1.00 99.9 ATOM 2258 HE2 LYS 152 0.141 63.780 2.486 1.00 99.9 ATOM 2259 HE3 LYS 152 1.318 63.124 3.624 1.00 99.9 ATOM 2260 NZ LYS 152 0.937 61.857 2.003 1.00 99.9 ATOM 2261 HZ1 LYS 152 1.893 62.026 1.722 1.00 99.9 ATOM 2262 HZ2 LYS 152 0.899 60.914 2.364 1.00 99.9 ATOM 2263 HZ3 LYS 152 0.381 61.867 1.160 1.00 99.9 ATOM 2264 C LYS 152 -4.578 60.579 2.247 1.00 99.9 ATOM 2265 O LYS 152 -4.413 59.356 2.306 1.00 99.9 ATOM 2266 N VAL 153 -4.752 61.228 1.101 1.00 99.9 ATOM 2267 H VAL 153 -4.990 62.205 1.190 1.00 99.9 ATOM 2268 CA VAL 153 -4.363 60.716 -0.240 1.00 99.9 ATOM 2269 HA VAL 153 -3.809 59.795 -0.057 1.00 99.9 ATOM 2270 CB VAL 153 -5.534 60.303 -1.131 1.00 99.9 ATOM 2271 HB VAL 153 -5.122 59.850 -2.031 1.00 99.9 ATOM 2272 CG1 VAL 153 -6.324 59.172 -0.438 1.00 99.9 ATOM 2273 HG11 VAL 153 -6.795 59.566 0.462 1.00 99.9 ATOM 2274 HG12 VAL 153 -7.097 58.821 -1.122 1.00 99.9 ATOM 2275 HG13 VAL 153 -5.655 58.337 -0.231 1.00 99.9 ATOM 2276 CG2 VAL 153 -6.443 61.458 -1.610 1.00 99.9 ATOM 2277 HG21 VAL 153 -5.882 62.208 -2.167 1.00 99.9 ATOM 2278 HG22 VAL 153 -7.176 61.075 -2.322 1.00 99.9 ATOM 2279 HG23 VAL 153 -6.978 61.883 -0.761 1.00 99.9 ATOM 2280 C VAL 153 -3.403 61.579 -1.034 1.00 99.9 ATOM 2281 O VAL 153 -2.702 61.011 -1.862 1.00 99.9 ATOM 2282 N PRO 154 -3.258 62.899 -0.835 1.00 99.9 ATOM 2283 CD PRO 154 -4.242 63.833 -0.249 1.00 99.9 ATOM 2284 HD2 PRO 154 -3.957 63.997 0.791 1.00 99.9 ATOM 2285 HD3 PRO 154 -5.263 63.456 -0.301 1.00 99.9 ATOM 2286 CG PRO 154 -4.122 65.139 -1.064 1.00 99.9 ATOM 2287 HG2 PRO 154 -4.475 66.026 -0.540 1.00 99.9 ATOM 2288 HG3 PRO 154 -4.604 65.037 -2.036 1.00 99.9 ATOM 2289 CB PRO 154 -2.622 65.155 -1.280 1.00 99.9 ATOM 2290 HB2 PRO 154 -2.189 65.523 -0.350 1.00 99.9 ATOM 2291 HB3 PRO 154 -2.285 65.764 -2.118 1.00 99.9 ATOM 2292 CA PRO 154 -2.235 63.687 -1.494 1.00 99.9 ATOM 2293 HA PRO 154 -2.259 63.421 -2.550 1.00 99.9 ATOM 2294 C PRO 154 -0.832 63.431 -0.999 1.00 99.9 ATOM 2295 O PRO 154 -0.669 62.910 0.091 1.00 99.9 ATOM 2296 N GLU 155 0.151 63.899 -1.750 1.00 99.9 ATOM 2297 H GLU 155 -0.102 64.341 -2.622 1.00 99.9 ATOM 2298 CA GLU 155 1.576 63.955 -1.463 1.00 99.9 ATOM 2299 HA GLU 155 1.996 64.477 -2.322 1.00 99.9 ATOM 2300 CB GLU 155 1.868 64.817 -0.232 1.00 99.9 ATOM 2301 HB2 GLU 155 1.495 64.321 0.663 1.00 99.9 ATOM 2302 HB3 GLU 155 2.948 64.909 -0.112 1.00 99.9 ATOM 2303 CG GLU 155 1.297 66.237 -0.253 1.00 99.9 ATOM 2304 HG2 GLU 155 1.684 66.730 -1.144 1.00 99.9 ATOM 2305 HG3 GLU 155 0.210 66.188 -0.314 1.00 99.9 ATOM 2306 CD GLU 155 1.790 66.998 0.975 1.00 99.9 ATOM 2307 OE1 GLU 155 0.994 67.431 1.847 1.00 99.9 ATOM 2308 OE2 GLU 155 3.029 67.234 1.045 1.00 99.9 ATOM 2309 C GLU 155 2.316 62.617 -1.404 1.00 99.9 ATOM 2310 O GLU 155 1.889 61.698 -0.721 1.00 99.9 ATOM 2311 N CYS 156 3.506 62.528 -1.998 1.00 99.9 ATOM 2312 H CYS 156 3.843 63.306 -2.547 1.00 99.9 ATOM 2313 CA CYS 156 4.304 61.291 -2.041 1.00 99.9 ATOM 2314 HA CYS 156 3.632 60.462 -2.259 1.00 99.9 ATOM 2315 CB CYS 156 5.344 61.355 -3.147 1.00 99.9 ATOM 2316 HB2 CYS 156 5.952 62.247 -2.989 1.00 99.9 ATOM 2317 HB3 CYS 156 6.026 60.506 -3.087 1.00 99.9 ATOM 2318 SG CYS 156 4.624 61.452 -4.822 1.00 99.9 ATOM 2319 HG CYS 156 4.089 60.228 -4.809 1.00 99.9 ATOM 2320 C CYS 156 4.935 60.960 -0.639 1.00 99.9 ATOM 2321 O CYS 156 4.734 59.839 -0.147 1.00 99.9 ATOM 2322 N PRO 157 5.574 61.928 0.045 1.00 99.9 ATOM 2323 CD PRO 157 6.234 63.100 -0.474 1.00 99.9 ATOM 2324 HD2 PRO 157 5.523 63.792 -0.925 1.00 99.9 ATOM 2325 HD3 PRO 157 6.963 62.775 -1.217 1.00 99.9 ATOM 2326 CG PRO 157 6.942 63.773 0.669 1.00 99.9 ATOM 2327 HG2 PRO 157 6.300 64.536 1.109 1.00 99.9 ATOM 2328 HG3 PRO 157 7.885 64.193 0.318 1.00 99.9 ATOM 2329 CB PRO 157 7.149 62.696 1.684 1.00 99.9 ATOM 2330 HB2 PRO 157 7.238 63.136 2.677 1.00 99.9 ATOM 2331 HB3 PRO 157 7.997 62.060 1.433 1.00 99.9 ATOM 2332 CA PRO 157 5.898 61.831 1.460 1.00 99.9 ATOM 2333 HA PRO 157 6.145 60.792 1.676 1.00 99.9 ATOM 2334 C PRO 157 4.723 62.301 2.352 1.00 99.9 ATOM 2335 O PRO 157 3.748 62.898 1.878 1.00 99.9 ATOM 2336 N ALA 158 4.845 62.070 3.680 1.00 99.9 ATOM 2337 H ALA 158 5.673 61.617 4.041 1.00 99.9 ATOM 2338 CA ALA 158 3.937 62.569 4.707 1.00 99.9 ATOM 2339 HA ALA 158 3.306 63.318 4.227 1.00 99.9 ATOM 2340 CB ALA 158 3.056 61.390 5.141 1.00 99.9 ATOM 2341 HB1 ALA 158 2.557 60.976 4.265 1.00 99.9 ATOM 2342 HB2 ALA 158 3.651 60.592 5.584 1.00 99.9 ATOM 2343 HB3 ALA 158 2.296 61.680 5.867 1.00 99.9 ATOM 2344 C ALA 158 4.696 63.276 5.839 1.00 99.9 ATOM 2345 O ALA 158 4.691 62.811 6.990 1.00 99.9 ATOM 2346 N GLY 159 5.390 64.369 5.518 1.00 99.9 ATOM 2347 H GLY 159 5.350 64.717 4.571 1.00 99.9 ATOM 2348 CA GLY 159 6.294 65.058 6.451 1.00 99.9 ATOM 2349 HA2 GLY 159 7.052 64.362 6.809 1.00 99.9 ATOM 2350 HA3 GLY 159 6.829 65.859 5.939 1.00 99.9 ATOM 2351 C GLY 159 5.548 65.651 7.663 1.00 99.9 ATOM 2352 O GLY 159 4.713 66.518 7.498 1.00 99.9 ATOM 2353 N PHE 160 5.818 65.140 8.872 1.00 99.9 ATOM 2354 H PHE 160 6.519 64.413 8.880 1.00 99.9 ATOM 2355 CA PHE 160 5.128 65.501 10.116 1.00 99.9 ATOM 2356 HA PHE 160 4.457 66.349 9.980 1.00 99.9 ATOM 2357 CB PHE 160 4.209 64.348 10.565 1.00 99.9 ATOM 2358 HB2 PHE 160 3.415 64.199 9.833 1.00 99.9 ATOM 2359 HB3 PHE 160 4.740 63.395 10.579 1.00 99.9 ATOM 2360 CG PHE 160 3.571 64.570 11.915 1.00 99.9 ATOM 2361 CD1 PHE 160 2.616 65.592 12.065 1.00 99.9 ATOM 2362 HD1 PHE 160 2.288 66.123 11.183 1.00 99.9 ATOM 2363 CE1 PHE 160 2.081 65.911 13.325 1.00 99.9 ATOM 2364 HE1 PHE 160 1.324 66.674 13.434 1.00 99.9 ATOM 2365 CZ PHE 160 2.520 65.198 14.435 1.00 99.9 ATOM 2366 HZ PHE 160 2.045 65.443 15.374 1.00 99.9 ATOM 2367 CE2 PHE 160 3.438 64.137 14.308 1.00 99.9 ATOM 2368 HE2 PHE 160 3.709 63.582 15.195 1.00 99.9 ATOM 2369 CD2 PHE 160 3.987 63.816 13.054 1.00 99.9 ATOM 2370 HD2 PHE 160 4.668 62.985 12.940 1.00 99.9 ATOM 2371 C PHE 160 6.120 65.857 11.208 1.00 99.9 ATOM 2372 O PHE 160 7.108 65.166 11.436 1.00 99.9 TER END ########################## # # # ACE results: # # # ########################## # WARNING! TARGET 6318 atoms, MODEL 7284 atoms, 6318 common with TARGET Number of atoms possible to evaluate: 171 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 86.76 38.1 42 2.7 1563 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 534 ARMSMC SURFACE . . . . . . . . 86.11 40.5 37 5.4 680 ARMSMC BURIED . . . . . . . . 91.36 20.0 5 0.6 883 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.21 42.1 19 2.8 670 ARMSSC1 RELIABLE SIDE CHAINS . 81.65 47.1 17 2.7 624 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 233 ARMSSC1 SURFACE . . . . . . . . 92.86 37.5 16 5.4 296 ARMSSC1 BURIED . . . . . . . . 66.42 66.7 3 0.8 374 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.57 50.0 14 3.2 444 ARMSSC2 RELIABLE SIDE CHAINS . 53.77 53.8 13 3.8 343 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 159 ARMSSC2 SURFACE . . . . . . . . 66.32 45.5 11 5.4 203 ARMSSC2 BURIED . . . . . . . . 80.35 66.7 3 1.2 241 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 54.99 40.0 5 3.6 138 ARMSSC3 RELIABLE SIDE CHAINS . 54.99 40.0 5 4.3 115 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC3 SURFACE . . . . . . . . 54.99 40.0 5 6.8 74 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 64 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 119.71 0.0 1 2.0 49 ARMSSC4 RELIABLE SIDE CHAINS . 119.71 0.0 1 2.0 49 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC4 SURFACE . . . . . . . . 119.71 0.0 1 3.4 29 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.47 (Number of atoms: 22) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.47 22 2.8 784 CRMSCA CRN = ALL/NP . . . . . 0.3849 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 268 CRMSCA SURFACE . . . . . . . . 8.06 19 5.6 341 CRMSCA BURIED . . . . . . . . 10.68 3 0.7 443 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.44 108 2.8 3872 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 1331 CRMSMC SURFACE . . . . . . . . 8.01 93 5.5 1686 CRMSMC BURIED . . . . . . . . 10.69 15 0.7 2186 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.54 83 2.6 3182 CRMSSC RELIABLE SIDE CHAINS . 9.68 75 2.7 2746 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 1125 CRMSSC SURFACE . . . . . . . . 8.97 62 4.5 1379 CRMSSC BURIED . . . . . . . . 11.05 21 1.2 1803 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.00 171 2.7 6318 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 2197 CRMSALL SURFACE . . . . . . . . 8.47 138 5.0 2743 CRMSALL BURIED . . . . . . . . 10.97 33 0.9 3575 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.422 0.863 0.874 22 2.8 784 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 268 ERRCA SURFACE . . . . . . . . 92.808 0.870 0.880 19 5.6 341 ERRCA BURIED . . . . . . . . 89.980 0.822 0.838 3 0.7 443 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.427 0.863 0.874 108 2.8 3872 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1331 ERRMC SURFACE . . . . . . . . 92.807 0.870 0.879 93 5.5 1686 ERRMC BURIED . . . . . . . . 90.073 0.824 0.840 15 0.7 2186 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.133 0.841 0.854 83 2.6 3182 ERRSC RELIABLE SIDE CHAINS . 91.038 0.839 0.853 75 2.7 2746 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1125 ERRSC SURFACE . . . . . . . . 91.735 0.851 0.863 62 4.5 1379 ERRSC BURIED . . . . . . . . 89.358 0.811 0.828 21 1.2 1803 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.812 0.853 0.865 171 2.7 6318 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 2197 ERRALL SURFACE . . . . . . . . 92.341 0.862 0.872 138 5.0 2743 ERRALL BURIED . . . . . . . . 89.600 0.815 0.832 33 0.9 3575 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 3 3 6 18 22 784 DISTCA CA (P) 0.13 0.38 0.38 0.77 2.30 784 DISTCA CA (RMS) 0.77 1.51 1.51 2.84 6.75 DISTCA ALL (N) 2 13 17 32 124 171 6318 DISTALL ALL (P) 0.03 0.21 0.27 0.51 1.96 6318 DISTALL ALL (RMS) 0.80 1.45 1.76 2.89 6.64 DISTALL END of the results output