####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS192_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS192_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.73 2.73 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 71 - 95 1.86 2.81 LCS_AVERAGE: 49.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 72 - 86 0.72 3.43 LCS_AVERAGE: 25.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 11 40 8 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 11 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 11 40 8 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 11 40 8 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 11 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 11 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 11 40 3 14 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 11 40 3 3 4 7 22 27 28 34 36 37 38 39 39 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 11 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 11 40 3 3 11 15 25 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 11 40 3 4 7 11 12 17 19 32 36 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 7 40 3 18 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 7 40 2 3 4 5 6 28 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 7 40 0 3 4 4 6 14 26 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 3 17 40 1 3 4 5 7 11 17 20 21 27 37 39 39 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 3 25 40 2 3 3 4 6 16 25 31 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 15 25 40 2 11 19 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 15 25 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 15 25 40 11 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 15 25 40 11 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 15 25 40 11 15 24 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 15 25 40 5 15 17 25 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 15 25 40 11 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 15 25 40 11 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 15 25 40 11 15 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 15 25 40 11 16 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 15 25 40 11 16 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 15 25 40 11 15 25 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 15 25 40 11 18 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 15 25 40 11 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 15 25 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 12 25 40 3 8 17 26 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 12 25 40 3 12 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 12 25 40 3 14 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 12 25 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 9 25 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 9 25 40 6 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 9 25 40 8 19 25 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 9 25 40 9 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 8 25 40 3 13 24 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 58.00 ( 25.00 49.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 19 26 31 32 34 35 35 37 38 38 39 39 40 40 40 40 40 40 40 GDT PERCENT_AT 27.50 47.50 65.00 77.50 80.00 85.00 87.50 87.50 92.50 95.00 95.00 97.50 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.27 0.61 0.98 1.21 1.28 1.43 1.55 1.55 2.12 2.28 2.26 2.42 2.42 2.73 2.73 2.73 2.73 2.73 2.73 2.73 GDT RMS_ALL_AT 3.41 3.06 2.93 2.84 2.84 2.86 2.85 2.85 2.74 2.76 2.75 2.76 2.76 2.73 2.73 2.73 2.73 2.73 2.73 2.73 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 76 D 76 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.310 0 0.196 0.196 1.601 79.286 79.286 LGA S 57 S 57 0.797 0 0.201 0.588 1.730 83.810 83.095 LGA C 58 C 58 0.752 0 0.168 0.206 1.067 88.214 88.968 LGA K 59 K 59 1.144 0 0.104 0.155 2.495 85.952 77.831 LGA G 60 G 60 0.745 0 0.215 0.215 0.811 92.857 92.857 LGA R 61 R 61 0.649 0 0.027 0.997 2.819 95.238 83.550 LGA C 62 C 62 1.677 0 0.521 0.471 2.541 73.333 76.032 LGA F 63 F 63 5.411 0 0.379 1.470 14.161 41.190 15.671 LGA E 64 E 64 1.194 0 0.062 0.813 2.574 77.143 71.270 LGA L 65 L 65 3.129 0 0.621 0.606 4.729 47.381 47.143 LGA Q 66 Q 66 5.343 0 0.154 0.772 12.998 38.214 18.095 LGA E 67 E 67 0.985 0 0.221 0.990 6.578 83.810 53.492 LGA V 68 V 68 3.697 0 0.204 0.301 7.478 34.524 25.034 LGA G 69 G 69 6.433 0 0.388 0.388 6.870 20.238 20.238 LGA P 70 P 70 9.408 0 0.186 0.315 11.537 5.238 3.197 LGA P 71 P 71 7.349 0 0.639 0.646 10.133 13.571 8.027 LGA D 72 D 72 2.163 3 0.638 0.611 3.141 65.119 40.655 LGA C 73 C 73 0.579 0 0.117 0.644 1.742 88.214 86.032 LGA R 74 R 74 0.706 0 0.055 1.323 6.662 90.476 65.844 LGA C 75 C 75 1.068 0 0.069 0.089 1.274 83.690 84.444 LGA D 76 D 76 1.670 0 0.065 0.927 4.221 75.000 62.143 LGA N 77 N 77 2.563 0 0.071 0.327 4.462 64.881 54.167 LGA L 78 L 78 0.546 0 0.159 1.244 4.275 92.976 76.548 LGA C 79 C 79 0.664 0 0.082 0.114 1.420 90.476 88.968 LGA K 80 K 80 1.478 0 0.109 1.011 2.060 79.286 77.831 LGA S 81 S 81 1.347 0 0.167 0.701 2.364 75.119 75.952 LGA Y 82 Y 82 1.394 0 0.033 0.329 2.054 75.119 78.651 LGA S 83 S 83 1.726 0 0.166 0.167 3.324 79.405 70.794 LGA S 84 S 84 0.712 0 0.158 0.144 0.939 92.857 92.063 LGA C 85 C 85 0.630 0 0.055 0.109 1.506 95.238 89.206 LGA C 86 C 86 0.441 0 0.092 0.283 1.837 88.571 87.698 LGA H 87 H 87 2.799 0 0.123 0.193 4.236 59.286 48.476 LGA D 88 D 88 1.942 0 0.116 1.142 3.039 72.857 73.274 LGA F 89 F 89 1.779 0 0.044 0.216 2.187 77.143 74.502 LGA D 90 D 90 0.851 0 0.026 0.614 2.081 88.214 82.798 LGA E 91 E 91 0.432 0 0.065 0.471 2.548 95.238 88.995 LGA L 92 L 92 0.776 0 0.069 0.172 1.290 88.333 86.012 LGA C 93 C 93 1.468 0 0.115 0.157 2.255 75.119 77.222 LGA L 94 L 94 1.303 0 0.417 0.519 2.418 77.262 78.274 LGA K 95 K 95 1.822 0 0.161 1.220 6.555 67.619 44.656 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.733 2.584 3.712 72.438 65.725 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 35 1.55 78.125 74.366 2.121 LGA_LOCAL RMSD: 1.550 Number of atoms: 35 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.854 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.733 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.237773 * X + -0.247440 * Y + -0.939275 * Z + 67.784111 Y_new = -0.969811 * X + -0.006591 * Y + -0.243767 * Z + 107.135567 Z_new = 0.054127 * X + 0.968881 * Y + -0.241537 * Z + -51.257065 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.330364 -0.054154 1.815111 [DEG: -76.2243 -3.1028 103.9982 ] ZXZ: -1.316871 1.814746 0.055808 [DEG: -75.4512 103.9773 3.1975 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS192_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS192_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 35 1.55 74.366 2.73 REMARK ---------------------------------------------------------- MOLECULE T0543TS192_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2cqw_A 2gso_A 3ism_A 1zm8_A ATOM 422 N GLY 56 35.247 73.491 19.014 1.00 0.00 N ATOM 423 CA GLY 56 34.255 73.846 19.979 1.00 0.00 C ATOM 424 C GLY 56 33.465 75.000 19.452 1.00 0.00 C ATOM 425 O GLY 56 33.373 76.042 20.094 1.00 0.00 O ATOM 426 N SER 57 32.891 74.845 18.242 1.00 0.00 N ATOM 427 CA SER 57 31.724 75.584 17.856 1.00 0.00 C ATOM 428 C SER 57 30.546 74.687 17.649 1.00 0.00 C ATOM 429 O SER 57 30.547 73.512 18.014 1.00 0.00 O ATOM 430 CB SER 57 32.004 76.378 16.595 1.00 0.00 C ATOM 431 OG SER 57 32.186 75.550 15.480 1.00 0.00 O ATOM 432 N CYS 58 29.480 75.273 17.066 1.00 0.00 N ATOM 433 CA CYS 58 28.445 74.514 16.430 1.00 0.00 C ATOM 434 C CYS 58 28.319 75.028 15.034 1.00 0.00 C ATOM 435 O CYS 58 27.226 75.045 14.468 1.00 0.00 O ATOM 436 CB CYS 58 27.198 74.831 17.255 1.00 0.00 C ATOM 437 SG CYS 58 27.290 74.308 18.985 1.00 0.00 S ATOM 438 N LYS 59 29.442 75.430 14.415 1.00 0.00 N ATOM 439 CA LYS 59 29.383 75.716 13.014 1.00 0.00 C ATOM 440 C LYS 59 29.075 74.457 12.265 1.00 0.00 C ATOM 441 O LYS 59 29.924 73.579 12.123 1.00 0.00 O ATOM 442 CB LYS 59 30.696 76.328 12.523 1.00 0.00 C ATOM 443 CG LYS 59 30.686 76.742 11.056 1.00 0.00 C ATOM 444 CD LYS 59 31.961 77.484 10.683 1.00 0.00 C ATOM 445 CE LYS 59 31.998 77.809 9.197 1.00 0.00 C ATOM 446 NZ LYS 59 33.211 78.588 8.828 1.00 0.00 N ATOM 447 N GLY 60 27.817 74.348 11.789 1.00 0.00 N ATOM 448 CA GLY 60 27.331 73.208 11.059 1.00 0.00 C ATOM 449 C GLY 60 26.307 72.471 11.875 1.00 0.00 C ATOM 450 O GLY 60 25.380 71.881 11.323 1.00 0.00 O ATOM 451 N ARG 61 26.482 72.464 13.208 1.00 0.00 N ATOM 452 CA ARG 61 26.225 71.349 14.087 1.00 0.00 C ATOM 453 C ARG 61 24.824 71.307 14.637 1.00 0.00 C ATOM 454 O ARG 61 24.537 70.512 15.532 1.00 0.00 O ATOM 455 CB ARG 61 27.245 71.291 15.215 1.00 0.00 C ATOM 456 CG ARG 61 28.681 71.073 14.767 1.00 0.00 C ATOM 457 CD ARG 61 29.652 70.914 15.880 1.00 0.00 C ATOM 458 NE ARG 61 29.408 69.763 16.734 1.00 0.00 N ATOM 459 CZ ARG 61 29.761 69.683 18.032 1.00 0.00 C ATOM 460 NH1 ARG 61 30.405 70.667 18.620 1.00 0.00 H ATOM 461 NH2 ARG 61 29.463 68.578 18.694 1.00 0.00 H ATOM 462 N CYS 62 23.930 72.193 14.165 1.00 0.00 N ATOM 463 CA CYS 62 22.505 72.004 14.282 1.00 0.00 C ATOM 464 C CYS 62 21.963 71.176 13.162 1.00 0.00 C ATOM 465 O CYS 62 20.759 71.180 12.911 1.00 0.00 O ATOM 466 CB CYS 62 21.966 73.433 14.197 1.00 0.00 C ATOM 467 SG CYS 62 22.585 74.545 15.482 1.00 0.00 S ATOM 468 N PHE 63 22.829 70.482 12.413 1.00 0.00 N ATOM 469 CA PHE 63 22.519 69.134 12.038 1.00 0.00 C ATOM 470 C PHE 63 22.222 68.304 13.248 1.00 0.00 C ATOM 471 O PHE 63 21.188 67.640 13.312 1.00 0.00 O ATOM 472 CB PHE 63 23.670 68.518 11.242 1.00 0.00 C ATOM 473 CG PHE 63 23.387 67.129 10.742 1.00 0.00 C ATOM 474 CD1 PHE 63 22.592 66.928 9.624 1.00 0.00 C ATOM 475 CD2 PHE 63 23.915 66.022 11.390 1.00 0.00 C ATOM 476 CE1 PHE 63 22.330 65.651 9.165 1.00 0.00 C ATOM 477 CE2 PHE 63 23.656 64.744 10.932 1.00 0.00 C ATOM 478 CZ PHE 63 22.862 64.560 9.817 1.00 0.00 C ATOM 479 N GLU 64 23.135 68.321 14.238 1.00 0.00 N ATOM 480 CA GLU 64 23.555 67.145 14.937 1.00 0.00 C ATOM 481 C GLU 64 22.650 66.968 16.116 1.00 0.00 C ATOM 482 O GLU 64 21.960 67.875 16.580 1.00 0.00 O ATOM 483 CB GLU 64 25.017 67.248 15.380 1.00 0.00 C ATOM 484 CG GLU 64 26.013 67.369 14.236 1.00 0.00 C ATOM 485 CD GLU 64 27.411 67.579 14.749 1.00 0.00 C ATOM 486 OE1 GLU 64 27.572 67.722 15.937 1.00 0.00 O ATOM 487 OE2 GLU 64 28.329 67.483 13.970 1.00 0.00 O ATOM 488 N LEU 65 22.638 65.744 16.650 1.00 0.00 N ATOM 489 CA LEU 65 21.975 65.532 17.891 1.00 0.00 C ATOM 490 C LEU 65 23.034 65.393 18.932 1.00 0.00 C ATOM 491 O LEU 65 24.176 65.807 18.727 1.00 0.00 O ATOM 492 CB LEU 65 21.074 64.293 17.837 1.00 0.00 C ATOM 493 CG LEU 65 19.960 64.340 16.783 1.00 0.00 C ATOM 494 CD1 LEU 65 19.192 63.025 16.776 1.00 0.00 C ATOM 495 CD2 LEU 65 19.030 65.507 17.078 1.00 0.00 C ATOM 496 N GLN 66 22.658 64.846 20.101 1.00 0.00 N ATOM 497 CA GLN 66 23.593 64.136 20.920 1.00 0.00 C ATOM 498 C GLN 66 24.046 62.916 20.199 1.00 0.00 C ATOM 499 O GLN 66 23.312 61.941 20.045 1.00 0.00 O ATOM 500 CB GLN 66 22.971 63.751 22.264 1.00 0.00 C ATOM 501 CG GLN 66 23.953 63.148 23.255 1.00 0.00 C ATOM 502 CD GLN 66 23.284 62.733 24.552 1.00 0.00 C ATOM 503 OE1 GLN 66 22.057 62.775 24.676 1.00 0.00 O ATOM 504 NE2 GLN 66 24.089 62.334 25.530 1.00 0.00 N ATOM 505 N GLU 67 25.295 62.948 19.704 1.00 0.00 N ATOM 506 CA GLU 67 25.739 61.805 18.986 1.00 0.00 C ATOM 507 C GLU 67 27.114 61.468 19.443 1.00 0.00 C ATOM 508 O GLU 67 27.788 62.261 20.098 1.00 0.00 O ATOM 509 CB GLU 67 25.711 62.052 17.476 1.00 0.00 C ATOM 510 CG GLU 67 24.330 62.355 16.914 1.00 0.00 C ATOM 511 CD GLU 67 24.392 62.653 15.442 1.00 0.00 C ATOM 512 OE1 GLU 67 24.820 61.800 14.701 1.00 0.00 O ATOM 513 OE2 GLU 67 23.910 63.687 15.044 1.00 0.00 O ATOM 514 N VAL 68 27.554 60.248 19.101 1.00 0.00 N ATOM 515 CA VAL 68 28.877 59.844 19.444 1.00 0.00 C ATOM 516 C VAL 68 29.596 59.875 18.139 1.00 0.00 C ATOM 517 O VAL 68 29.221 59.187 17.191 1.00 0.00 O ATOM 518 CB VAL 68 28.949 58.443 20.083 1.00 0.00 C ATOM 519 CG1 VAL 68 30.393 58.070 20.385 1.00 0.00 C ATOM 520 CG2 VAL 68 28.111 58.393 21.352 1.00 0.00 C ATOM 521 N GLY 69 30.637 60.715 18.037 1.00 0.00 N ATOM 522 CA GLY 69 31.207 61.014 16.757 1.00 0.00 C ATOM 523 C GLY 69 31.647 62.440 16.785 1.00 0.00 C ATOM 524 O GLY 69 32.833 62.735 16.656 1.00 0.00 O ATOM 525 N PRO 70 30.724 63.343 16.960 1.00 0.00 N ATOM 526 CA PRO 70 31.083 64.717 16.771 1.00 0.00 C ATOM 527 C PRO 70 31.755 65.069 18.042 1.00 0.00 C ATOM 528 O PRO 70 31.640 64.239 18.947 1.00 0.00 O ATOM 529 CB PRO 70 29.777 65.482 16.539 1.00 0.00 C ATOM 530 CG PRO 70 28.738 64.655 17.217 1.00 0.00 C ATOM 531 CD PRO 70 29.203 63.231 17.074 1.00 0.00 C ATOM 532 N PRO 71 32.399 66.219 18.124 1.00 0.00 N ATOM 533 CA PRO 71 32.956 66.728 19.353 1.00 0.00 C ATOM 534 C PRO 71 31.895 66.788 20.383 1.00 0.00 C ATOM 535 O PRO 71 30.720 66.756 20.018 1.00 0.00 O ATOM 536 CB PRO 71 33.498 68.118 18.999 1.00 0.00 C ATOM 537 CG PRO 71 33.697 68.073 17.523 1.00 0.00 C ATOM 538 CD PRO 71 32.607 67.178 16.999 1.00 0.00 C ATOM 539 N ASP 72 32.296 66.837 21.662 1.00 0.00 N ATOM 540 CA ASP 72 31.619 66.127 22.702 1.00 0.00 C ATOM 541 C ASP 72 30.936 67.130 23.557 1.00 0.00 C ATOM 542 O ASP 72 29.861 66.881 24.096 1.00 0.00 O ATOM 543 CB ASP 72 32.586 65.274 23.528 1.00 0.00 C ATOM 544 CG ASP 72 33.312 64.197 22.733 1.00 0.00 C ATOM 545 OD1 ASP 72 32.650 63.385 22.129 1.00 0.00 O ATOM 546 OD2 ASP 72 34.509 64.285 22.607 1.00 0.00 O ATOM 547 N CYS 73 31.565 68.303 23.673 1.00 0.00 N ATOM 548 CA CYS 73 30.966 69.581 23.487 1.00 0.00 C ATOM 549 C CYS 73 29.925 69.490 22.394 1.00 0.00 C ATOM 550 O CYS 73 30.254 69.527 21.211 1.00 0.00 O ATOM 551 CB CYS 73 32.147 70.452 23.057 1.00 0.00 C ATOM 552 SG CYS 73 31.887 72.229 23.277 1.00 0.00 S ATOM 553 N ARG 74 28.624 69.386 22.763 1.00 0.00 N ATOM 554 CA ARG 74 27.600 69.112 21.784 1.00 0.00 C ATOM 555 C ARG 74 26.702 70.303 21.627 1.00 0.00 C ATOM 556 O ARG 74 26.771 71.255 22.404 1.00 0.00 O ATOM 557 CB ARG 74 26.808 67.852 22.101 1.00 0.00 C ATOM 558 CG ARG 74 27.565 66.550 21.887 1.00 0.00 C ATOM 559 CD ARG 74 26.986 65.382 22.597 1.00 0.00 C ATOM 560 NE ARG 74 27.608 64.109 22.268 1.00 0.00 N ATOM 561 CZ ARG 74 28.623 63.552 22.957 1.00 0.00 C ATOM 562 NH1 ARG 74 29.158 64.167 23.988 1.00 0.00 H ATOM 563 NH2 ARG 74 29.083 62.380 22.554 1.00 0.00 H ATOM 564 N CYS 75 25.845 70.286 20.579 1.00 0.00 N ATOM 565 CA CYS 75 25.012 71.426 20.299 1.00 0.00 C ATOM 566 C CYS 75 23.561 71.016 20.245 1.00 0.00 C ATOM 567 O CYS 75 22.784 71.578 19.474 1.00 0.00 O ATOM 568 CB CYS 75 25.502 71.876 18.922 1.00 0.00 C ATOM 569 SG CYS 75 27.260 72.293 18.852 1.00 0.00 S ATOM 570 N ASP 76 23.137 70.045 21.076 1.00 0.00 N ATOM 571 CA ASP 76 21.766 69.604 21.032 1.00 0.00 C ATOM 572 C ASP 76 20.974 70.367 22.055 1.00 0.00 C ATOM 573 O ASP 76 21.513 71.189 22.792 1.00 0.00 O ATOM 574 CB ASP 76 21.662 68.098 21.285 1.00 0.00 C ATOM 575 CG ASP 76 20.398 67.453 20.731 1.00 0.00 C ATOM 576 OD1 ASP 76 19.589 68.159 20.178 1.00 0.00 O ATOM 577 OD2 ASP 76 20.322 66.247 20.728 1.00 0.00 O ATOM 578 N ASN 77 19.654 70.099 22.124 1.00 0.00 N ATOM 579 CA ASN 77 18.836 70.516 23.234 1.00 0.00 C ATOM 580 C ASN 77 19.356 69.919 24.510 1.00 0.00 C ATOM 581 O ASN 77 19.251 70.530 25.572 1.00 0.00 O ATOM 582 CB ASN 77 17.379 70.145 23.031 1.00 0.00 C ATOM 583 CG ASN 77 16.687 70.967 21.979 1.00 0.00 C ATOM 584 OD1 ASN 77 17.146 72.054 21.610 1.00 0.00 O ATOM 585 ND2 ASN 77 15.542 70.494 21.555 1.00 0.00 N ATOM 586 N LEU 78 19.879 68.684 24.429 1.00 0.00 N ATOM 587 CA LEU 78 20.153 67.778 25.518 1.00 0.00 C ATOM 588 C LEU 78 21.371 68.153 26.322 1.00 0.00 C ATOM 589 O LEU 78 21.474 67.771 27.487 1.00 0.00 O ATOM 590 CB LEU 78 20.311 66.353 24.972 1.00 0.00 C ATOM 591 CG LEU 78 19.046 65.749 24.348 1.00 0.00 C ATOM 592 CD1 LEU 78 19.361 64.386 23.745 1.00 0.00 C ATOM 593 CD2 LEU 78 17.962 65.632 25.409 1.00 0.00 C ATOM 594 N CYS 79 22.323 68.913 25.743 1.00 0.00 N ATOM 595 CA CYS 79 23.657 69.029 26.284 1.00 0.00 C ATOM 596 C CYS 79 23.670 69.664 27.644 1.00 0.00 C ATOM 597 O CYS 79 24.641 69.500 28.380 1.00 0.00 O ATOM 598 CB CYS 79 24.349 69.937 25.268 1.00 0.00 C ATOM 599 SG CYS 79 23.837 71.670 25.339 1.00 0.00 S ATOM 600 N LYS 80 22.611 70.398 28.027 1.00 0.00 N ATOM 601 CA LYS 80 22.596 71.095 29.288 1.00 0.00 C ATOM 602 C LYS 80 22.238 70.140 30.394 1.00 0.00 C ATOM 603 O LYS 80 22.524 70.406 31.561 1.00 0.00 O ATOM 604 CB LYS 80 21.612 72.264 29.253 1.00 0.00 C ATOM 605 CG LYS 80 21.992 73.378 28.286 1.00 0.00 C ATOM 606 CD LYS 80 20.935 74.473 28.260 1.00 0.00 C ATOM 607 CE LYS 80 21.319 75.590 27.300 1.00 0.00 C ATOM 608 NZ LYS 80 20.256 76.627 27.202 1.00 0.00 N ATOM 609 N SER 81 21.611 68.994 30.070 1.00 0.00 N ATOM 610 CA SER 81 21.246 68.065 31.105 1.00 0.00 C ATOM 611 C SER 81 22.360 67.073 31.263 1.00 0.00 C ATOM 612 O SER 81 22.369 66.269 32.195 1.00 0.00 O ATOM 613 CB SER 81 19.940 67.370 30.773 1.00 0.00 C ATOM 614 OG SER 81 20.054 66.540 29.650 1.00 0.00 O ATOM 615 N TYR 82 23.318 67.108 30.323 1.00 0.00 N ATOM 616 CA TYR 82 24.560 66.387 30.353 1.00 0.00 C ATOM 617 C TYR 82 25.725 67.297 30.622 1.00 0.00 C ATOM 618 O TYR 82 26.856 66.832 30.725 1.00 0.00 O ATOM 619 CB TYR 82 24.793 65.597 29.061 1.00 0.00 C ATOM 620 CG TYR 82 23.618 64.686 29.017 1.00 0.00 C ATOM 621 CD1 TYR 82 22.640 64.857 28.065 1.00 0.00 C ATOM 622 CD2 TYR 82 23.479 63.684 29.948 1.00 0.00 C ATOM 623 CE1 TYR 82 21.545 64.024 28.032 1.00 0.00 C ATOM 624 CE2 TYR 82 22.386 62.850 29.918 1.00 0.00 C ATOM 625 CZ TYR 82 21.417 63.019 28.959 1.00 0.00 C ATOM 626 OH TYR 82 20.294 62.166 28.924 1.00 0.00 H ATOM 627 N SER 83 25.483 68.621 30.692 1.00 0.00 N ATOM 628 CA SER 83 26.354 69.615 31.278 1.00 0.00 C ATOM 629 C SER 83 27.573 69.783 30.412 1.00 0.00 C ATOM 630 O SER 83 28.679 69.972 30.921 1.00 0.00 O ATOM 631 CB SER 83 26.747 69.221 32.688 1.00 0.00 C ATOM 632 OG SER 83 25.631 69.073 33.523 1.00 0.00 O ATOM 633 N SER 84 27.385 69.664 29.077 1.00 0.00 N ATOM 634 CA SER 84 28.387 69.372 28.079 1.00 0.00 C ATOM 635 C SER 84 28.126 70.087 26.771 1.00 0.00 C ATOM 636 O SER 84 28.270 69.490 25.705 1.00 0.00 O ATOM 637 CB SER 84 28.459 67.875 27.849 1.00 0.00 C ATOM 638 OG SER 84 27.215 67.337 27.488 1.00 0.00 O ATOM 639 N CYS 85 27.714 71.368 26.803 1.00 0.00 N ATOM 640 CA CYS 85 27.409 72.100 25.597 1.00 0.00 C ATOM 641 C CYS 85 28.619 72.777 25.024 1.00 0.00 C ATOM 642 O CYS 85 29.542 73.178 25.731 1.00 0.00 O ATOM 643 CB CYS 85 26.397 73.138 26.085 1.00 0.00 C ATOM 644 SG CYS 85 24.923 72.439 26.866 1.00 0.00 S ATOM 645 N CYS 86 28.614 72.923 23.681 1.00 0.00 N ATOM 646 CA CYS 86 29.280 74.005 23.006 1.00 0.00 C ATOM 647 C CYS 86 28.283 75.107 22.900 1.00 0.00 C ATOM 648 O CYS 86 27.162 74.891 22.453 1.00 0.00 O ATOM 649 CB CYS 86 29.626 73.431 21.632 1.00 0.00 C ATOM 650 SG CYS 86 31.348 72.910 21.448 1.00 0.00 S ATOM 651 N HIS 87 28.672 76.329 23.302 1.00 0.00 N ATOM 652 CA HIS 87 27.725 77.268 23.833 1.00 0.00 C ATOM 653 C HIS 87 26.985 77.911 22.698 1.00 0.00 C ATOM 654 O HIS 87 26.003 78.622 22.909 1.00 0.00 O ATOM 655 CB HIS 87 28.419 78.330 24.692 1.00 0.00 C ATOM 656 CG HIS 87 29.310 79.247 23.913 1.00 0.00 C ATOM 657 ND1 HIS 87 30.545 78.859 23.441 1.00 0.00 N ATOM 658 CD2 HIS 87 29.146 80.533 23.526 1.00 0.00 C ATOM 659 CE1 HIS 87 31.103 79.868 22.794 1.00 0.00 C ATOM 660 NE2 HIS 87 30.274 80.895 22.832 1.00 0.00 N ATOM 661 N ASP 88 27.469 77.665 21.469 1.00 0.00 N ATOM 662 CA ASP 88 26.972 78.138 20.202 1.00 0.00 C ATOM 663 C ASP 88 25.698 77.443 19.848 1.00 0.00 C ATOM 664 O ASP 88 25.092 77.740 18.821 1.00 0.00 O ATOM 665 CB ASP 88 28.010 77.930 19.096 1.00 0.00 C ATOM 666 CG ASP 88 29.209 78.866 19.174 1.00 0.00 C ATOM 667 OD1 ASP 88 29.145 79.821 19.912 1.00 0.00 O ATOM 668 OD2 ASP 88 30.231 78.538 18.620 1.00 0.00 O ATOM 669 N PHE 89 25.275 76.474 20.673 1.00 0.00 N ATOM 670 CA PHE 89 23.885 76.157 20.839 1.00 0.00 C ATOM 671 C PHE 89 23.099 77.362 21.252 1.00 0.00 C ATOM 672 O PHE 89 22.146 77.738 20.571 1.00 0.00 O ATOM 673 CB PHE 89 23.711 75.039 21.869 1.00 0.00 C ATOM 674 CG PHE 89 22.278 74.680 22.137 1.00 0.00 C ATOM 675 CD1 PHE 89 21.478 74.161 21.130 1.00 0.00 C ATOM 676 CD2 PHE 89 21.726 74.863 23.396 1.00 0.00 C ATOM 677 CE1 PHE 89 20.158 73.830 21.376 1.00 0.00 C ATOM 678 CE2 PHE 89 20.407 74.532 23.645 1.00 0.00 C ATOM 679 CZ PHE 89 19.623 74.015 22.633 1.00 0.00 C ATOM 680 N ASP 90 23.483 78.021 22.355 1.00 0.00 N ATOM 681 CA ASP 90 22.756 79.171 22.806 1.00 0.00 C ATOM 682 C ASP 90 22.955 80.324 21.872 1.00 0.00 C ATOM 683 O ASP 90 22.012 81.054 21.571 1.00 0.00 O ATOM 684 CB ASP 90 23.182 79.558 24.223 1.00 0.00 C ATOM 685 CG ASP 90 22.645 78.642 25.314 1.00 0.00 C ATOM 686 OD1 ASP 90 21.730 77.899 25.042 1.00 0.00 O ATOM 687 OD2 ASP 90 23.249 78.575 26.357 1.00 0.00 O ATOM 688 N GLU 91 24.187 80.514 21.371 1.00 0.00 N ATOM 689 CA GLU 91 24.375 81.558 20.409 1.00 0.00 C ATOM 690 C GLU 91 23.894 81.135 19.062 1.00 0.00 C ATOM 691 O GLU 91 22.802 81.511 18.643 1.00 0.00 O ATOM 692 CB GLU 91 25.848 81.967 20.338 1.00 0.00 C ATOM 693 CG GLU 91 26.127 83.165 19.441 1.00 0.00 C ATOM 694 CD GLU 91 27.579 83.551 19.480 1.00 0.00 C ATOM 695 OE1 GLU 91 28.321 82.926 20.199 1.00 0.00 O ATOM 696 OE2 GLU 91 27.969 84.395 18.710 1.00 0.00 O ATOM 697 N LEU 92 24.688 80.328 18.335 1.00 0.00 N ATOM 698 CA LEU 92 24.546 80.374 16.912 1.00 0.00 C ATOM 699 C LEU 92 23.307 79.674 16.449 1.00 0.00 C ATOM 700 O LEU 92 22.775 79.983 15.385 1.00 0.00 O ATOM 701 CB LEU 92 25.781 79.759 16.243 1.00 0.00 C ATOM 702 CG LEU 92 27.087 80.539 16.441 1.00 0.00 C ATOM 703 CD1 LEU 92 28.248 79.785 15.807 1.00 0.00 C ATOM 704 CD2 LEU 92 26.948 81.927 15.832 1.00 0.00 C ATOM 705 N CYS 93 22.807 78.704 17.235 1.00 0.00 N ATOM 706 CA CYS 93 21.620 78.012 16.828 1.00 0.00 C ATOM 707 C CYS 93 20.375 78.689 17.321 1.00 0.00 C ATOM 708 O CYS 93 19.496 79.039 16.535 1.00 0.00 O ATOM 709 CB CYS 93 21.787 76.648 17.497 1.00 0.00 C ATOM 710 SG CYS 93 23.257 75.731 16.972 1.00 0.00 S ATOM 711 N LEU 94 20.278 78.914 18.647 1.00 0.00 N ATOM 712 CA LEU 94 19.068 79.445 19.213 1.00 0.00 C ATOM 713 C LEU 94 18.872 80.892 18.924 1.00 0.00 C ATOM 714 O LEU 94 17.762 81.294 18.583 1.00 0.00 O ATOM 715 CB LEU 94 19.058 79.215 20.730 1.00 0.00 C ATOM 716 CG LEU 94 18.892 77.754 21.168 1.00 0.00 C ATOM 717 CD1 LEU 94 18.959 77.655 22.686 1.00 0.00 C ATOM 718 CD2 LEU 94 17.567 77.215 20.650 1.00 0.00 C ATOM 719 N LYS 95 19.931 81.714 19.042 1.00 0.00 N ATOM 720 CA LYS 95 19.753 83.061 19.506 1.00 0.00 C ATOM 721 C LYS 95 18.865 83.831 18.580 1.00 0.00 C ATOM 722 O LYS 95 19.280 84.287 17.517 1.00 0.00 O ATOM 723 CB LYS 95 21.103 83.766 19.647 1.00 0.00 C ATOM 724 CG LYS 95 21.019 85.177 20.215 1.00 0.00 C ATOM 725 CD LYS 95 22.404 85.749 20.484 1.00 0.00 C ATOM 726 CE LYS 95 22.324 87.186 20.977 1.00 0.00 C ATOM 727 NZ LYS 95 23.668 87.742 21.289 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 46.86 61.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 53.15 53.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 24.35 81.8 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.12 63.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 66.01 62.9 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 62.02 64.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 71.65 63.6 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.19 56.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 58.74 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 66.28 50.0 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 44.46 80.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 60.86 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 62.11 50.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 49.85 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 89.29 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 41.81 60.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 41.81 60.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 21.56 75.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 82.95 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.73 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.73 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0683 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 3.02 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.77 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.80 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 3.05 142 100.0 142 CRMSMC BURIED . . . . . . . . 2.03 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.70 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.48 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.20 103 100.0 103 CRMSSC BURIED . . . . . . . . 3.03 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.73 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.11 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.50 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.123 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.334 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.565 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.173 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.359 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 1.692 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.475 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 3.278 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 3.902 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 2.377 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.736 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.018 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 2.003 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 9 30 33 35 40 40 40 DISTCA CA (P) 22.50 75.00 82.50 87.50 100.00 40 DISTCA CA (RMS) 0.80 1.35 1.52 1.73 2.73 DISTCA ALL (N) 49 177 221 263 294 303 303 DISTALL ALL (P) 16.17 58.42 72.94 86.80 97.03 303 DISTALL ALL (RMS) 0.79 1.36 1.64 2.18 3.09 DISTALL END of the results output