####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 32 ( 294), selected 32 , name T0543TS186_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 32 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS186_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 27 56 - 90 4.95 6.92 LCS_AVERAGE: 65.16 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 6 56 - 61 1.70 17.84 LCS_AVERAGE: 11.80 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 87 - 91 0.89 14.67 LCS_AVERAGE: 9.45 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 32 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 6 27 3 3 7 7 7 9 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT S 57 S 57 4 6 27 3 3 7 7 7 8 12 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT C 58 C 58 4 6 27 3 3 7 7 7 9 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT K 59 K 59 4 6 27 3 4 4 6 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT G 60 G 60 4 6 27 3 4 4 5 8 8 10 13 15 17 18 21 22 25 26 28 30 31 31 32 LCS_GDT R 61 R 61 4 6 27 3 4 4 5 8 9 12 13 15 17 21 22 23 25 26 28 30 31 31 32 LCS_GDT C 62 C 62 4 5 27 3 4 7 7 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT F 63 F 63 3 5 27 3 4 7 7 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT E 64 E 64 4 4 27 4 4 7 7 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT L 65 L 65 4 4 27 4 4 4 5 6 9 11 13 15 17 19 21 23 25 26 28 30 31 31 32 LCS_GDT Q 66 Q 66 4 4 27 4 4 4 4 7 9 11 13 15 17 19 21 22 25 26 27 30 31 31 32 LCS_GDT E 67 E 67 4 4 27 4 4 7 7 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT C 75 C 75 3 5 27 0 3 4 5 8 9 12 12 14 15 20 22 23 25 26 28 30 31 31 32 LCS_GDT D 76 D 76 4 5 27 3 3 4 5 8 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT N 77 N 77 4 5 27 3 4 6 6 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT L 78 L 78 4 5 27 3 4 6 6 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT C 79 C 79 4 5 27 3 3 4 5 7 9 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT S 81 S 81 3 5 27 0 3 3 4 5 9 12 12 13 17 21 22 23 25 26 28 30 31 31 32 LCS_GDT Y 82 Y 82 3 4 27 3 3 5 5 5 8 12 13 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT S 83 S 83 3 4 27 3 3 5 5 6 8 12 12 13 15 19 22 23 25 26 28 30 31 31 32 LCS_GDT S 84 S 84 3 4 27 3 3 5 5 6 8 12 12 13 15 19 22 23 25 26 28 30 31 31 32 LCS_GDT C 85 C 85 3 4 27 3 3 5 5 7 10 13 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT C 86 C 86 3 4 27 0 3 3 5 8 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT H 87 H 87 5 5 27 3 3 5 5 5 6 7 9 12 15 17 20 20 21 25 26 27 29 31 32 LCS_GDT D 88 D 88 5 5 27 4 4 5 5 5 6 8 15 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT F 89 F 89 5 5 27 4 4 6 6 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT D 90 D 90 5 5 27 4 4 5 6 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 LCS_GDT E 91 E 91 5 5 21 4 4 5 5 5 6 6 8 11 17 21 22 23 25 26 28 30 31 31 32 LCS_GDT L 92 L 92 3 4 21 0 3 3 3 4 5 7 10 11 15 19 20 23 25 26 28 30 31 31 32 LCS_GDT C 93 C 93 3 4 21 0 3 3 3 4 6 8 10 12 15 19 20 23 24 26 28 30 31 31 32 LCS_GDT L 94 L 94 3 3 21 0 3 3 3 3 4 4 9 12 15 19 20 20 24 26 28 30 31 31 32 LCS_GDT K 95 K 95 3 3 21 0 3 3 3 3 4 4 9 12 15 19 20 20 24 26 27 29 31 31 32 LCS_AVERAGE LCS_A: 28.80 ( 9.45 11.80 65.16 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 7 7 9 11 14 16 17 18 21 22 23 25 26 28 30 31 31 32 GDT PERCENT_AT 10.00 10.00 17.50 17.50 22.50 27.50 35.00 40.00 42.50 45.00 52.50 55.00 57.50 62.50 65.00 70.00 75.00 77.50 77.50 80.00 GDT RMS_LOCAL 0.21 0.21 1.04 1.04 1.79 2.04 2.58 2.79 2.94 3.12 3.79 3.95 4.12 4.43 4.62 5.19 5.53 5.72 5.72 5.96 GDT RMS_ALL_AT 19.89 19.89 7.67 7.67 7.04 7.10 6.88 7.01 7.09 7.02 6.49 6.47 6.53 6.58 6.60 6.07 5.99 5.97 5.97 5.96 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 3.622 0 0.167 0.167 4.040 43.452 43.452 LGA S 57 S 57 3.901 0 0.058 0.083 4.172 48.452 44.683 LGA C 58 C 58 3.138 0 0.674 0.975 5.084 46.905 42.857 LGA K 59 K 59 2.431 0 0.189 1.117 9.167 71.190 38.519 LGA G 60 G 60 7.347 0 0.026 0.026 8.129 12.381 12.381 LGA R 61 R 61 6.035 0 0.179 1.184 12.199 26.667 12.208 LGA C 62 C 62 1.256 0 0.028 0.034 4.717 58.690 59.444 LGA F 63 F 63 3.190 0 0.191 1.370 8.770 51.071 28.918 LGA E 64 E 64 1.418 0 0.689 1.205 6.278 69.048 52.646 LGA L 65 L 65 6.604 0 0.137 0.217 11.753 16.310 8.393 LGA Q 66 Q 66 6.588 0 0.612 1.123 9.978 22.024 11.164 LGA E 67 E 67 1.560 0 0.600 1.633 5.359 69.286 54.709 LGA C 75 C 75 6.583 0 0.124 0.816 9.900 20.833 14.762 LGA D 76 D 76 3.061 0 0.362 0.853 6.160 46.667 35.952 LGA N 77 N 77 1.473 0 0.504 0.780 4.753 71.548 64.167 LGA L 78 L 78 0.593 0 0.650 0.571 4.268 68.452 69.762 LGA C 79 C 79 3.587 0 0.688 0.811 6.811 34.643 37.540 LGA S 81 S 81 7.733 0 0.445 0.866 8.307 11.548 12.143 LGA Y 82 Y 82 5.517 0 0.237 1.286 7.554 15.833 23.770 LGA S 83 S 83 9.178 0 0.551 0.488 13.205 2.976 1.984 LGA S 84 S 84 7.919 0 0.286 0.288 8.373 10.119 10.397 LGA C 85 C 85 3.842 0 0.602 0.772 5.628 33.333 45.317 LGA C 86 C 86 3.102 0 0.669 0.597 6.788 55.476 45.397 LGA H 87 H 87 9.588 0 0.047 1.158 12.654 5.238 2.095 LGA D 88 D 88 4.935 0 0.301 1.170 6.637 41.667 45.714 LGA F 89 F 89 2.709 0 0.160 0.156 9.721 55.595 28.312 LGA D 90 D 90 2.812 0 0.049 0.615 6.683 42.381 39.821 LGA E 91 E 91 7.773 0 0.132 1.153 14.211 8.333 4.233 LGA L 92 L 92 11.759 0 0.057 0.954 13.081 0.000 0.000 LGA C 93 C 93 12.761 0 0.668 0.884 14.800 0.000 0.000 LGA L 94 L 94 14.375 0 0.508 0.480 14.950 0.000 0.000 LGA K 95 K 95 17.531 0 0.279 0.899 19.695 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 32 128 128 100.00 247 247 100.00 40 SUMMARY(RMSD_GDC): 5.956 5.919 6.917 26.503 22.268 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 32 40 4.0 16 2.79 34.375 29.638 0.553 LGA_LOCAL RMSD: 2.792 Number of atoms: 16 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 7.014 Number of assigned atoms: 32 Std_ASGN_ATOMS RMSD: 5.956 Standard rmsd on all 32 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.064996 * X + -0.756118 * Y + -0.651200 * Z + 16.109406 Y_new = -0.990031 * X + 0.032855 * Y + -0.136963 * Z + 71.383858 Z_new = 0.124955 * X + 0.653610 * Y + -0.746445 * Z + -6.698050 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.505240 -0.125282 2.422405 [DEG: -86.2439 -7.1782 138.7936 ] ZXZ: -1.363494 2.413500 0.188897 [DEG: -78.1225 138.2834 10.8230 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS186_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS186_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 32 40 4.0 16 2.79 29.638 5.96 REMARK ---------------------------------------------------------- MOLECULE T0543TS186_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 478 N GLY 56 38.216 73.822 15.928 1.00 50.00 N ATOM 479 CA GLY 56 37.093 73.421 16.784 1.00 50.00 C ATOM 480 C GLY 56 35.822 74.298 16.492 1.00 50.00 C ATOM 481 O GLY 56 35.271 74.891 17.405 1.00 50.00 O ATOM 482 N SER 57 35.468 74.326 15.223 1.00 50.00 N ATOM 483 CA SER 57 34.310 75.101 14.721 1.00 50.00 C ATOM 484 C SER 57 32.982 74.423 14.955 1.00 50.00 C ATOM 485 O SER 57 32.857 73.157 15.024 1.00 50.00 O ATOM 486 H SER 57 35.969 73.843 14.651 1.00 50.00 H ATOM 487 CB SER 57 34.461 75.382 13.224 1.00 50.00 C ATOM 488 HG SER 57 33.204 76.754 13.104 1.00 50.00 H ATOM 489 OG SER 57 33.313 76.033 12.709 1.00 50.00 O ATOM 490 N CYS 58 31.980 75.258 15.085 1.00 50.00 N ATOM 491 CA CYS 58 30.597 74.805 15.269 1.00 50.00 C ATOM 492 C CYS 58 29.723 75.513 14.204 1.00 50.00 C ATOM 493 O CYS 58 30.049 76.559 13.686 1.00 50.00 O ATOM 494 H CYS 58 32.165 76.138 15.058 1.00 50.00 H ATOM 495 CB CYS 58 30.119 75.108 16.690 1.00 50.00 C ATOM 496 SG CYS 58 30.050 76.868 17.097 1.00 50.00 S ATOM 497 N LYS 59 28.578 74.957 13.887 1.00 50.00 N ATOM 498 CA LYS 59 28.052 73.663 14.439 1.00 50.00 C ATOM 499 C LYS 59 28.628 72.467 13.682 1.00 50.00 C ATOM 500 O LYS 59 29.446 72.624 12.759 1.00 50.00 O ATOM 501 H LYS 59 28.095 75.419 13.285 1.00 50.00 H ATOM 502 CB LYS 59 26.524 73.637 14.378 1.00 50.00 C ATOM 503 CD LYS 59 24.338 74.544 15.214 1.00 50.00 C ATOM 504 CE LYS 59 23.756 74.971 13.877 1.00 50.00 C ATOM 505 CG LYS 59 25.850 74.698 15.233 1.00 50.00 C ATOM 506 HZ1 LYS 59 23.541 76.651 12.864 1.00 50.00 H ATOM 507 HZ2 LYS 59 24.753 76.661 13.667 1.00 50.00 H ATOM 508 HZ3 LYS 59 23.461 76.876 14.298 1.00 50.00 H ATOM 509 NZ LYS 59 23.891 76.436 13.655 1.00 50.00 N ATOM 510 N GLY 60 29.440 74.811 17.153 1.00 50.00 N ATOM 511 CA GLY 60 28.946 73.764 18.015 1.00 50.00 C ATOM 512 C GLY 60 27.440 73.748 18.174 1.00 50.00 C ATOM 513 O GLY 60 26.910 73.020 19.023 1.00 50.00 O ATOM 514 N ARG 61 26.916 74.820 17.742 1.00 50.00 N ATOM 515 CA ARG 61 25.653 75.276 18.362 1.00 50.00 C ATOM 516 C ARG 61 24.516 74.290 18.123 1.00 50.00 C ATOM 517 O ARG 61 23.583 74.190 18.934 1.00 50.00 O ATOM 518 H ARG 61 27.290 75.300 17.078 1.00 50.00 H ATOM 519 CB ARG 61 25.261 76.655 17.827 1.00 50.00 C ATOM 520 CD ARG 61 23.423 76.454 16.129 1.00 50.00 C ATOM 521 HE ARG 61 23.699 76.656 14.153 1.00 50.00 H ATOM 522 NE ARG 61 23.065 76.500 14.714 1.00 50.00 N ATOM 523 CG ARG 61 24.911 76.670 16.347 1.00 50.00 C ATOM 524 CZ ARG 61 21.833 76.319 14.249 1.00 50.00 C ATOM 525 HH11 ARG 61 22.248 76.536 12.399 1.00 50.00 H ATOM 526 HH12 ARG 61 20.805 76.262 12.643 1.00 50.00 H ATOM 527 NH1 ARG 61 21.601 76.380 12.944 1.00 50.00 N ATOM 528 HH21 ARG 61 20.986 76.039 15.934 1.00 50.00 H ATOM 529 HH22 ARG 61 20.039 75.961 14.787 1.00 50.00 H ATOM 530 NH2 ARG 61 20.836 76.078 15.088 1.00 50.00 N ATOM 531 N CYS 62 24.552 73.638 16.963 1.00 50.00 N ATOM 532 CA CYS 62 23.437 72.669 16.766 1.00 50.00 C ATOM 533 C CYS 62 23.516 71.473 17.729 1.00 50.00 C ATOM 534 O CYS 62 24.535 70.817 17.852 1.00 50.00 O ATOM 535 H CYS 62 25.177 73.740 16.323 1.00 50.00 H ATOM 536 CB CYS 62 23.421 72.156 15.325 1.00 50.00 C ATOM 537 SG CYS 62 23.063 73.421 14.085 1.00 50.00 S ATOM 538 N PHE 63 22.379 71.096 18.423 1.00 50.00 N ATOM 539 CA PHE 63 22.420 69.885 19.313 1.00 50.00 C ATOM 540 C PHE 63 22.583 68.618 18.524 1.00 50.00 C ATOM 541 O PHE 63 22.874 67.543 19.155 1.00 50.00 O ATOM 542 H PHE 63 21.618 71.570 18.343 1.00 50.00 H ATOM 543 CB PHE 63 21.151 69.803 20.164 1.00 50.00 C ATOM 544 CG PHE 63 21.140 68.649 21.125 1.00 50.00 C ATOM 545 CZ PHE 63 21.115 66.509 22.899 1.00 50.00 C ATOM 546 CD1 PHE 63 21.907 68.680 22.276 1.00 50.00 C ATOM 547 CE1 PHE 63 21.897 67.618 23.161 1.00 50.00 C ATOM 548 CD2 PHE 63 20.363 67.532 20.878 1.00 50.00 C ATOM 549 CE2 PHE 63 20.352 66.470 21.761 1.00 50.00 C ATOM 550 N GLU 64 22.408 68.580 17.261 1.00 50.00 N ATOM 551 CA GLU 64 22.612 67.365 16.435 1.00 50.00 C ATOM 552 C GLU 64 24.088 66.939 16.365 1.00 50.00 C ATOM 553 O GLU 64 24.374 65.845 15.892 1.00 50.00 O ATOM 554 H GLU 64 22.146 69.349 16.873 1.00 50.00 H ATOM 555 CB GLU 64 22.083 67.586 15.017 1.00 50.00 C ATOM 556 CD GLU 64 22.374 70.034 14.466 1.00 50.00 C ATOM 557 CG GLU 64 22.860 68.620 14.218 1.00 50.00 C ATOM 558 OE1 GLU 64 21.347 70.197 15.158 1.00 50.00 O ATOM 559 OE2 GLU 64 23.021 70.979 13.969 1.00 50.00 O ATOM 560 N LEU 65 24.913 67.838 16.884 1.00 50.00 N ATOM 561 CA LEU 65 26.371 67.548 16.863 1.00 50.00 C ATOM 562 C LEU 65 26.922 67.181 18.220 1.00 50.00 C ATOM 563 O LEU 65 28.108 66.907 18.380 1.00 50.00 O ATOM 564 H LEU 65 24.613 68.607 17.242 1.00 50.00 H ATOM 565 CB LEU 65 27.149 68.747 16.318 1.00 50.00 C ATOM 566 CG LEU 65 26.830 69.166 14.881 1.00 50.00 C ATOM 567 CD1 LEU 65 27.599 70.421 14.503 1.00 50.00 C ATOM 568 CD2 LEU 65 27.145 68.039 13.910 1.00 50.00 C ATOM 569 N GLN 66 26.026 67.123 19.206 1.00 50.00 N ATOM 570 CA GLN 66 26.418 66.655 20.546 1.00 50.00 C ATOM 571 C GLN 66 27.112 65.288 20.547 1.00 50.00 C ATOM 572 O GLN 66 28.230 65.100 21.163 1.00 50.00 O ATOM 573 H GLN 66 25.176 67.372 19.047 1.00 50.00 H ATOM 574 CB GLN 66 25.198 66.583 21.466 1.00 50.00 C ATOM 575 CD GLN 66 25.664 64.775 23.166 1.00 50.00 C ATOM 576 CG GLN 66 25.531 66.263 22.914 1.00 50.00 C ATOM 577 OE1 GLN 66 24.991 63.964 22.531 1.00 50.00 O ATOM 578 HE21 GLN 66 26.655 63.538 24.288 1.00 50.00 H ATOM 579 HE22 GLN 66 27.010 65.035 24.541 1.00 50.00 H ATOM 580 NE2 GLN 66 26.536 64.409 24.099 1.00 50.00 N ATOM 581 N GLU 67 26.299 64.283 20.109 1.00 50.00 N ATOM 582 CA GLU 67 26.797 62.885 20.280 1.00 50.00 C ATOM 583 C GLU 67 28.006 62.652 19.422 1.00 50.00 C ATOM 584 O GLU 67 29.016 62.078 19.946 1.00 50.00 O ATOM 585 H GLU 67 25.495 64.432 19.733 1.00 50.00 H ATOM 586 CB GLU 67 25.696 61.878 19.938 1.00 50.00 C ATOM 587 CD GLU 67 26.351 60.096 21.604 1.00 50.00 C ATOM 588 CG GLU 67 26.096 60.427 20.146 1.00 50.00 C ATOM 589 OE1 GLU 67 25.788 60.789 22.477 1.00 50.00 O ATOM 590 OE2 GLU 67 27.115 59.145 21.872 1.00 50.00 O ATOM 591 N CYS 75 19.295 70.210 16.810 1.00 50.00 N ATOM 592 CA CYS 75 19.263 71.578 17.289 1.00 50.00 C ATOM 593 C CYS 75 19.307 71.617 18.785 1.00 50.00 C ATOM 594 O CYS 75 18.698 72.346 19.688 1.00 50.00 O ATOM 595 CB CYS 75 18.014 72.296 16.776 1.00 50.00 C ATOM 596 SG CYS 75 17.910 74.041 17.242 1.00 50.00 S ATOM 597 N ASP 76 20.320 70.783 18.988 1.00 50.00 N ATOM 598 CA ASP 76 20.729 70.826 20.406 1.00 50.00 C ATOM 599 C ASP 76 19.415 71.277 21.126 1.00 50.00 C ATOM 600 O ASP 76 19.087 72.449 21.535 1.00 50.00 O ATOM 601 H ASP 76 20.750 70.242 18.412 1.00 50.00 H ATOM 602 CB ASP 76 21.914 71.776 20.593 1.00 50.00 C ATOM 603 CG ASP 76 22.596 71.601 21.936 1.00 50.00 C ATOM 604 OD1 ASP 76 22.174 70.710 22.704 1.00 50.00 O ATOM 605 OD2 ASP 76 23.551 72.353 22.221 1.00 50.00 O ATOM 606 N ASN 77 18.437 70.374 21.426 1.00 50.00 N ATOM 607 CA ASN 77 18.233 69.564 22.544 1.00 50.00 C ATOM 608 C ASN 77 19.254 68.885 23.482 1.00 50.00 C ATOM 609 O ASN 77 20.553 68.892 23.402 1.00 50.00 O ATOM 610 H ASN 77 17.855 70.348 20.739 1.00 50.00 H ATOM 611 CB ASN 77 17.380 68.348 22.176 1.00 50.00 C ATOM 612 CG ASN 77 16.964 67.541 23.389 1.00 50.00 C ATOM 613 OD1 ASN 77 16.744 68.092 24.468 1.00 50.00 O ATOM 614 HD21 ASN 77 16.608 65.702 23.904 1.00 50.00 H ATOM 615 HD22 ASN 77 17.022 65.865 22.410 1.00 50.00 H ATOM 616 ND2 ASN 77 16.853 66.229 23.215 1.00 50.00 N ATOM 617 N LEU 78 18.578 68.200 24.549 1.00 50.00 N ATOM 618 CA LEU 78 19.340 67.514 25.399 1.00 50.00 C ATOM 619 C LEU 78 20.216 66.488 24.527 1.00 50.00 C ATOM 620 O LEU 78 19.612 66.081 23.704 1.00 50.00 O ATOM 621 H LEU 78 17.685 68.219 24.659 1.00 50.00 H ATOM 622 CB LEU 78 18.473 66.797 26.436 1.00 50.00 C ATOM 623 CG LEU 78 19.219 66.048 27.542 1.00 50.00 C ATOM 624 CD1 LEU 78 19.971 67.022 28.438 1.00 50.00 C ATOM 625 CD2 LEU 78 18.257 65.207 28.366 1.00 50.00 C ATOM 626 N CYS 79 21.333 66.373 25.022 1.00 50.00 N ATOM 627 CA CYS 79 22.453 65.766 24.228 1.00 50.00 C ATOM 628 C CYS 79 22.021 64.325 24.244 1.00 50.00 C ATOM 629 O CYS 79 21.982 63.745 25.393 1.00 50.00 O ATOM 630 H CYS 79 21.480 66.654 25.865 1.00 50.00 H ATOM 631 CB CYS 79 23.802 66.068 24.885 1.00 50.00 C ATOM 632 SG CYS 79 24.221 67.826 24.954 1.00 50.00 S ATOM 633 N SER 81 25.363 64.507 24.765 1.00 50.00 N ATOM 634 CA SER 81 24.423 65.621 24.649 1.00 50.00 C ATOM 635 C SER 81 24.811 66.662 25.709 1.00 50.00 C ATOM 636 O SER 81 23.985 67.119 26.489 1.00 50.00 O ATOM 637 CB SER 81 22.985 65.128 24.825 1.00 50.00 C ATOM 638 HG SER 81 22.924 65.215 26.687 1.00 50.00 H ATOM 639 OG SER 81 22.777 64.617 26.130 1.00 50.00 O ATOM 640 N TYR 82 26.079 67.003 25.513 1.00 50.00 N ATOM 641 CA TYR 82 26.727 68.222 26.008 1.00 50.00 C ATOM 642 C TYR 82 26.784 68.906 24.618 1.00 50.00 C ATOM 643 O TYR 82 26.632 70.091 24.363 1.00 50.00 O ATOM 644 H TYR 82 26.549 66.408 25.029 1.00 50.00 H ATOM 645 CB TYR 82 28.047 67.883 26.704 1.00 50.00 C ATOM 646 CG TYR 82 27.892 66.982 27.908 1.00 50.00 C ATOM 647 HH TYR 82 27.721 63.725 31.011 1.00 50.00 H ATOM 648 OH TYR 82 27.470 64.491 31.210 1.00 50.00 O ATOM 649 CZ TYR 82 27.608 65.316 30.119 1.00 50.00 C ATOM 650 CD1 TYR 82 28.242 65.639 27.842 1.00 50.00 C ATOM 651 CE1 TYR 82 28.103 64.809 28.937 1.00 50.00 C ATOM 652 CD2 TYR 82 27.395 67.476 29.107 1.00 50.00 C ATOM 653 CE2 TYR 82 27.249 66.660 30.213 1.00 50.00 C ATOM 654 N SER 83 26.851 67.768 23.647 1.00 50.00 N ATOM 655 CA SER 83 27.088 68.133 22.319 1.00 50.00 C ATOM 656 C SER 83 25.989 68.960 21.690 1.00 50.00 C ATOM 657 O SER 83 26.361 70.013 21.006 1.00 50.00 O ATOM 658 H SER 83 26.751 66.900 23.864 1.00 50.00 H ATOM 659 CB SER 83 27.308 66.891 21.453 1.00 50.00 C ATOM 660 HG SER 83 29.146 66.725 21.726 1.00 50.00 H ATOM 661 OG SER 83 28.498 66.215 21.822 1.00 50.00 O ATOM 662 N SER 84 24.814 68.509 22.027 1.00 50.00 N ATOM 663 CA SER 84 23.622 69.219 21.331 1.00 50.00 C ATOM 664 C SER 84 23.399 70.627 21.855 1.00 50.00 C ATOM 665 O SER 84 23.103 71.565 20.962 1.00 50.00 O ATOM 666 H SER 84 24.662 67.842 22.611 1.00 50.00 H ATOM 667 CB SER 84 22.338 68.405 21.505 1.00 50.00 C ATOM 668 HG SER 84 22.559 67.982 23.308 1.00 50.00 H ATOM 669 OG SER 84 21.955 68.342 22.868 1.00 50.00 O ATOM 670 N CYS 85 23.566 70.770 23.225 1.00 50.00 N ATOM 671 CA CYS 85 23.407 72.125 23.832 1.00 50.00 C ATOM 672 C CYS 85 24.478 73.015 23.506 1.00 50.00 C ATOM 673 O CYS 85 24.202 74.221 23.123 1.00 50.00 O ATOM 674 H CYS 85 23.767 70.065 23.747 1.00 50.00 H ATOM 675 CB CYS 85 23.293 72.021 25.354 1.00 50.00 C ATOM 676 SG CYS 85 24.750 71.326 26.167 1.00 50.00 S ATOM 677 N CYS 86 25.687 72.513 23.809 1.00 50.00 N ATOM 678 CA CYS 86 26.765 73.319 23.863 1.00 50.00 C ATOM 679 C CYS 86 27.493 73.192 22.544 1.00 50.00 C ATOM 680 O CYS 86 28.332 73.981 22.367 1.00 50.00 O ATOM 681 H CYS 86 25.776 71.633 23.977 1.00 50.00 H ATOM 682 CB CYS 86 27.656 72.945 25.049 1.00 50.00 C ATOM 683 SG CYS 86 26.864 73.124 26.665 1.00 50.00 S ATOM 684 N HIS 87 21.209 74.266 20.335 1.00 50.00 N ATOM 685 CA HIS 87 22.210 73.608 21.145 1.00 50.00 C ATOM 686 C HIS 87 23.524 74.286 21.165 1.00 50.00 C ATOM 687 O HIS 87 24.206 74.384 22.219 1.00 50.00 O ATOM 688 CB HIS 87 22.421 72.168 20.672 1.00 50.00 C ATOM 689 CG HIS 87 23.415 71.403 21.489 1.00 50.00 C ATOM 690 HD1 HIS 87 25.190 72.010 20.632 1.00 50.00 H ATOM 691 ND1 HIS 87 24.774 71.488 21.279 1.00 50.00 N ATOM 692 CE1 HIS 87 25.404 70.692 22.163 1.00 50.00 C ATOM 693 CD2 HIS 87 23.343 70.463 22.599 1.00 50.00 C ATOM 694 NE2 HIS 87 24.551 70.074 22.957 1.00 50.00 N ATOM 695 N ASP 88 23.867 74.754 20.060 1.00 50.00 N ATOM 696 CA ASP 88 25.111 75.472 20.008 1.00 50.00 C ATOM 697 C ASP 88 25.070 76.774 21.018 1.00 50.00 C ATOM 698 O ASP 88 26.063 77.124 21.722 1.00 50.00 O ATOM 699 H ASP 88 23.372 74.658 19.315 1.00 50.00 H ATOM 700 CB ASP 88 25.413 75.917 18.575 1.00 50.00 C ATOM 701 CG ASP 88 26.786 76.543 18.437 1.00 50.00 C ATOM 702 OD1 ASP 88 27.722 76.080 19.122 1.00 50.00 O ATOM 703 OD2 ASP 88 26.928 77.496 17.642 1.00 50.00 O ATOM 704 N PHE 89 23.919 77.444 21.150 1.00 50.00 N ATOM 705 CA PHE 89 23.748 78.698 22.109 1.00 50.00 C ATOM 706 C PHE 89 23.802 78.422 23.578 1.00 50.00 C ATOM 707 O PHE 89 24.471 79.153 24.420 1.00 50.00 O ATOM 708 H PHE 89 23.221 77.152 20.664 1.00 50.00 H ATOM 709 CB PHE 89 22.423 79.409 21.830 1.00 50.00 C ATOM 710 CG PHE 89 22.209 80.642 22.661 1.00 50.00 C ATOM 711 CZ PHE 89 21.811 82.921 24.202 1.00 50.00 C ATOM 712 CD1 PHE 89 22.904 81.807 22.387 1.00 50.00 C ATOM 713 CE1 PHE 89 22.709 82.941 23.152 1.00 50.00 C ATOM 714 CD2 PHE 89 21.314 80.637 23.715 1.00 50.00 C ATOM 715 CE2 PHE 89 21.118 81.772 24.480 1.00 50.00 C ATOM 716 N ASP 90 23.132 77.406 23.892 1.00 50.00 N ATOM 717 CA ASP 90 23.155 77.113 25.289 1.00 50.00 C ATOM 718 C ASP 90 24.561 76.723 25.731 1.00 50.00 C ATOM 719 O ASP 90 24.941 77.138 26.920 1.00 50.00 O ATOM 720 H ASP 90 22.667 76.880 23.330 1.00 50.00 H ATOM 721 CB ASP 90 22.163 75.995 25.618 1.00 50.00 C ATOM 722 CG ASP 90 20.720 76.447 25.513 1.00 50.00 C ATOM 723 OD1 ASP 90 20.484 77.576 25.031 1.00 50.00 O ATOM 724 OD2 ASP 90 19.824 75.674 25.913 1.00 50.00 O ATOM 725 N GLU 91 25.350 76.021 24.784 1.00 50.00 N ATOM 726 CA GLU 91 26.698 75.616 25.208 1.00 50.00 C ATOM 727 C GLU 91 27.581 76.806 25.433 1.00 50.00 C ATOM 728 O GLU 91 28.340 76.906 26.432 1.00 50.00 O ATOM 729 H GLU 91 25.061 75.823 23.955 1.00 50.00 H ATOM 730 CB GLU 91 27.329 74.686 24.170 1.00 50.00 C ATOM 731 CD GLU 91 28.660 73.259 25.774 1.00 50.00 C ATOM 732 CG GLU 91 28.703 74.164 24.559 1.00 50.00 C ATOM 733 OE1 GLU 91 27.902 72.267 25.749 1.00 50.00 O ATOM 734 OE2 GLU 91 29.384 73.542 26.752 1.00 50.00 O ATOM 735 N LEU 92 22.017 76.535 29.898 1.00 50.00 N ATOM 736 CA LEU 92 22.851 77.221 28.778 1.00 50.00 C ATOM 737 C LEU 92 23.200 78.683 29.182 1.00 50.00 C ATOM 738 O LEU 92 24.117 79.285 28.528 1.00 50.00 O ATOM 739 CB LEU 92 22.087 77.201 27.452 1.00 50.00 C ATOM 740 CG LEU 92 20.827 78.065 27.382 1.00 50.00 C ATOM 741 CD1 LEU 92 21.184 79.513 27.086 1.00 50.00 C ATOM 742 CD2 LEU 92 19.866 77.530 26.330 1.00 50.00 C ATOM 743 N CYS 93 22.487 79.332 30.070 1.00 50.00 N ATOM 744 CA CYS 93 22.823 80.735 30.397 1.00 50.00 C ATOM 745 C CYS 93 22.770 80.953 31.906 1.00 50.00 C ATOM 746 O CYS 93 21.819 80.375 32.548 1.00 50.00 O ATOM 747 H CYS 93 21.795 78.928 30.480 1.00 50.00 H ATOM 748 CB CYS 93 21.871 81.695 29.681 1.00 50.00 C ATOM 749 SG CYS 93 22.219 83.445 29.970 1.00 50.00 S ATOM 750 N LEU 94 23.675 81.717 32.526 1.00 50.00 N ATOM 751 CA LEU 94 23.472 82.070 33.908 1.00 50.00 C ATOM 752 C LEU 94 23.062 83.437 33.925 1.00 50.00 C ATOM 753 O LEU 94 23.346 84.407 33.094 1.00 50.00 O ATOM 754 H LEU 94 24.406 82.010 32.090 1.00 50.00 H ATOM 755 CB LEU 94 24.750 81.833 34.716 1.00 50.00 C ATOM 756 CG LEU 94 25.300 80.405 34.711 1.00 50.00 C ATOM 757 CD1 LEU 94 26.613 80.333 35.474 1.00 50.00 C ATOM 758 CD2 LEU 94 24.289 79.438 35.307 1.00 50.00 C ATOM 759 N LYS 95 22.257 83.842 35.041 1.00 50.00 N ATOM 760 CA LYS 95 21.826 85.242 35.199 1.00 50.00 C ATOM 761 C LYS 95 20.769 85.341 36.283 1.00 50.00 C ATOM 762 O LYS 95 20.817 84.527 37.224 1.00 50.00 O ATOM 763 H LYS 95 22.014 83.225 35.649 1.00 50.00 H ATOM 764 CB LYS 95 21.295 85.792 33.874 1.00 50.00 C ATOM 765 CD LYS 95 22.012 88.184 34.138 1.00 50.00 C ATOM 766 CE LYS 95 21.564 89.635 34.117 1.00 50.00 C ATOM 767 CG LYS 95 20.836 87.239 33.943 1.00 50.00 C ATOM 768 HZ1 LYS 95 22.397 91.409 34.353 1.00 50.00 H ATOM 769 HZ2 LYS 95 23.318 90.461 33.747 1.00 50.00 H ATOM 770 HZ3 LYS 95 23.046 90.398 35.174 1.00 50.00 H ATOM 771 NZ LYS 95 22.694 90.569 34.373 1.00 50.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 247 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 79.17 41.4 58 74.4 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 75.60 42.9 42 75.0 56 ARMSMC BURIED . . . . . . . . 87.87 37.5 16 72.7 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.79 40.0 30 83.3 36 ARMSSC1 RELIABLE SIDE CHAINS . 91.79 40.0 30 85.7 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 85.77 42.9 21 84.0 25 ARMSSC1 BURIED . . . . . . . . 104.48 33.3 9 81.8 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.52 36.8 19 82.6 23 ARMSSC2 RELIABLE SIDE CHAINS . 68.04 23.1 13 76.5 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 65.96 40.0 15 83.3 18 ARMSSC2 BURIED . . . . . . . . 58.81 25.0 4 80.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.47 42.9 7 77.8 9 ARMSSC3 RELIABLE SIDE CHAINS . 69.34 50.0 6 75.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 78.05 33.3 6 85.7 7 ARMSSC3 BURIED . . . . . . . . 14.72 100.0 1 50.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.34 0.0 3 60.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 75.34 0.0 3 60.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 75.34 0.0 3 75.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.96 (Number of atoms: 32) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.96 32 80.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1861 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 6.26 23 79.3 29 CRMSCA BURIED . . . . . . . . 5.09 9 81.8 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.08 158 80.2 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 6.39 113 79.6 142 CRMSMC BURIED . . . . . . . . 5.22 45 81.8 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.99 119 83.2 143 CRMSSC RELIABLE SIDE CHAINS . 7.64 103 82.4 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 8.43 89 86.4 103 CRMSSC BURIED . . . . . . . . 6.52 30 75.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 6.99 247 81.5 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 7.39 181 82.6 219 CRMSALL BURIED . . . . . . . . 5.76 66 78.6 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 44.502 0.805 0.824 32 80.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 44.208 0.796 0.817 23 79.3 29 ERRCA BURIED . . . . . . . . 45.255 0.829 0.844 9 81.8 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 44.388 0.801 0.821 158 80.2 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 44.090 0.792 0.814 113 79.6 142 ERRMC BURIED . . . . . . . . 45.137 0.825 0.841 45 81.8 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 42.573 0.746 0.778 119 83.2 143 ERRSC RELIABLE SIDE CHAINS . 42.871 0.754 0.784 103 82.4 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 42.078 0.731 0.765 89 86.4 103 ERRSC BURIED . . . . . . . . 44.044 0.791 0.814 30 75.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 43.584 0.777 0.802 247 81.5 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 43.168 0.764 0.792 181 82.6 219 ERRALL BURIED . . . . . . . . 44.725 0.812 0.831 66 78.6 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 4 15 31 32 40 DISTCA CA (P) 0.00 2.50 10.00 37.50 77.50 40 DISTCA CA (RMS) 0.00 1.38 1.95 3.69 5.73 DISTCA ALL (N) 1 9 29 89 219 247 303 DISTALL ALL (P) 0.33 2.97 9.57 29.37 72.28 303 DISTALL ALL (RMS) 0.91 1.63 2.22 3.63 6.25 DISTALL END of the results output