####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS174_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS174_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 2.93 2.93 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 42 98 - 139 1.87 3.00 LONGEST_CONTINUOUS_SEGMENT: 42 99 - 140 1.92 3.00 LCS_AVERAGE: 89.63 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 115 - 139 0.83 3.33 LCS_AVERAGE: 40.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 4 45 3 3 3 3 4 4 6 6 6 6 10 35 38 42 42 45 45 45 45 45 LCS_GDT A 97 A 97 3 5 45 3 3 3 4 5 5 6 8 12 36 37 40 43 43 44 45 45 45 45 45 LCS_GDT R 98 R 98 3 42 45 3 3 3 4 5 5 8 12 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 99 G 99 12 42 45 3 3 10 29 36 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT W 100 W 100 12 42 45 5 12 23 30 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 101 E 101 12 42 45 10 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 102 C 102 12 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT T 103 T 103 12 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT K 104 K 104 12 42 45 7 19 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT D 105 D 105 12 42 45 4 16 25 33 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT R 106 R 106 12 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 107 C 107 12 42 45 9 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 108 G 108 12 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 109 E 109 12 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT V 110 V 110 12 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT R 111 R 111 12 42 45 3 5 11 13 23 38 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT N 112 N 112 8 42 45 3 18 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 113 E 113 8 42 45 3 11 16 24 32 38 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 114 E 114 10 42 45 3 8 23 31 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT N 115 N 115 25 42 45 3 19 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT A 116 A 116 25 42 45 8 23 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 117 C 117 25 42 45 10 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT H 118 H 118 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 119 C 119 25 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT S 120 S 120 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 121 E 121 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT D 122 D 122 25 42 45 12 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 123 C 123 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT L 124 L 124 25 42 45 7 23 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT S 125 S 125 25 42 45 7 23 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT R 126 R 126 25 42 45 4 19 30 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 127 G 127 25 42 45 4 17 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT D 128 D 128 25 42 45 9 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 129 C 129 25 42 45 8 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 130 C 130 25 42 45 8 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT T 131 T 131 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT N 132 N 132 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT Y 133 Y 133 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT Q 134 Q 134 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT V 135 V 135 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT V 136 V 136 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 137 C 137 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT K 138 K 138 25 42 45 10 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 139 G 139 25 42 45 3 23 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 140 E 140 3 42 45 0 3 3 4 5 5 8 37 40 41 43 43 43 43 44 45 45 45 45 45 LCS_AVERAGE LCS_A: 76.69 ( 40.44 89.63 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 GDT PERCENT_AT 31.11 55.56 68.89 77.78 82.22 86.67 91.11 91.11 91.11 93.33 95.56 95.56 95.56 95.56 97.78 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.38 0.64 0.84 1.04 1.19 1.39 1.64 1.64 1.64 1.87 2.10 2.10 2.10 2.10 2.43 2.93 2.93 2.93 2.93 2.93 GDT RMS_ALL_AT 3.19 3.25 3.31 3.21 3.18 3.08 3.01 3.01 3.01 3.00 3.00 3.00 3.00 3.00 2.97 2.93 2.93 2.93 2.93 2.93 # Checking swapping # possible swapping detected: E 101 E 101 # possible swapping detected: D 105 D 105 # possible swapping detected: E 109 E 109 # possible swapping detected: E 113 E 113 # possible swapping detected: E 121 E 121 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 11.651 0 0.650 0.676 13.539 0.238 0.816 LGA A 97 A 97 8.665 0 0.422 0.649 10.611 3.810 3.048 LGA R 98 R 98 6.094 0 0.641 0.982 15.123 16.667 8.052 LGA G 99 G 99 2.955 0 0.157 0.157 3.416 53.571 53.571 LGA W 100 W 100 2.697 0 0.719 1.177 7.609 50.833 47.041 LGA E 101 E 101 1.263 0 0.133 0.930 2.459 85.952 77.037 LGA C 102 C 102 0.529 0 0.213 0.414 1.030 88.214 88.968 LGA T 103 T 103 1.387 0 0.095 0.153 2.456 77.143 72.993 LGA K 104 K 104 1.466 0 0.065 0.749 4.470 77.143 60.053 LGA D 105 D 105 2.438 0 0.107 1.009 6.398 66.786 49.286 LGA R 106 R 106 0.878 0 0.160 1.063 6.150 88.214 69.654 LGA C 107 C 107 1.401 0 0.609 1.011 4.400 66.190 64.603 LGA G 108 G 108 0.780 0 0.770 0.770 2.068 86.429 86.429 LGA E 109 E 109 1.168 0 0.095 1.173 7.149 79.286 57.778 LGA V 110 V 110 0.989 0 0.564 1.411 4.685 73.690 67.415 LGA R 111 R 111 3.784 0 0.137 1.030 15.883 48.690 19.567 LGA N 112 N 112 1.410 0 0.061 0.800 6.463 72.976 58.333 LGA E 113 E 113 4.040 0 0.678 1.208 10.445 37.976 21.111 LGA E 114 E 114 2.735 0 0.266 0.591 6.581 59.048 40.317 LGA N 115 N 115 1.635 0 0.084 1.006 2.591 79.405 75.238 LGA A 116 A 116 1.829 0 0.181 0.254 2.436 72.857 71.238 LGA C 117 C 117 1.163 0 0.106 0.200 1.346 85.952 87.460 LGA H 118 H 118 0.918 0 0.070 1.134 2.976 90.476 80.143 LGA C 119 C 119 0.716 0 0.236 0.292 1.880 86.071 86.032 LGA S 120 S 120 0.397 0 0.100 0.131 0.653 95.238 95.238 LGA E 121 E 121 0.771 0 0.116 0.996 3.930 88.214 72.328 LGA D 122 D 122 0.277 0 0.133 1.194 4.535 97.619 79.524 LGA C 123 C 123 0.534 0 0.056 0.174 1.330 90.595 90.556 LGA L 124 L 124 1.672 0 0.076 1.421 4.891 73.333 68.095 LGA S 125 S 125 2.018 0 0.202 0.716 4.236 66.786 61.508 LGA R 126 R 126 2.208 0 0.117 0.603 2.592 62.857 67.749 LGA G 127 G 127 1.552 0 0.102 0.102 1.977 75.000 75.000 LGA D 128 D 128 1.146 0 0.243 1.234 4.155 79.286 68.988 LGA C 129 C 129 1.456 0 0.084 0.138 1.600 81.429 80.000 LGA C 130 C 130 0.923 0 0.069 0.237 1.415 85.952 84.444 LGA T 131 T 131 0.810 0 0.069 0.077 1.670 90.595 85.442 LGA N 132 N 132 0.174 0 0.161 1.251 4.467 97.619 81.190 LGA Y 133 Y 133 0.480 0 0.238 0.869 8.698 92.976 54.563 LGA Q 134 Q 134 0.917 0 0.078 0.617 3.542 90.476 70.741 LGA V 135 V 135 1.037 0 0.059 0.084 1.331 85.952 84.014 LGA V 136 V 136 0.424 0 0.044 0.075 0.765 97.619 97.279 LGA C 137 C 137 0.517 0 0.047 0.135 0.941 92.857 92.063 LGA K 138 K 138 1.234 0 0.221 0.367 5.581 75.476 56.138 LGA G 139 G 139 1.929 0 0.744 0.744 4.397 60.357 60.357 LGA E 140 E 140 6.972 0 0.514 1.164 13.351 12.619 6.085 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 2.928 3.019 4.346 72.011 63.944 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 41 1.64 81.111 85.702 2.354 LGA_LOCAL RMSD: 1.642 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.008 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.928 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.740259 * X + 0.540885 * Y + -0.399324 * Z + 58.378857 Y_new = -0.188060 * X + 0.403656 * Y + 0.895375 * Z + 105.880531 Z_new = 0.645484 * X + 0.737906 * Y + -0.197091 * Z + 44.789471 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.892810 -0.701657 1.831799 [DEG: -165.7458 -40.2020 104.9543 ] ZXZ: -2.722083 1.769186 0.718689 [DEG: -155.9639 101.3669 41.1779 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS174_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS174_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 41 1.64 85.702 2.93 REMARK ---------------------------------------------------------- MOLECULE T0543TS174_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 728 N THR 96 15.621 95.892 25.272 1.00 0.00 N ATOM 729 CA THR 96 14.806 95.061 24.346 1.00 0.00 C ATOM 730 CB THR 96 14.886 95.152 22.798 1.00 0.00 C ATOM 731 C THR 96 15.383 93.562 24.380 1.00 0.00 C ATOM 732 O THR 96 16.563 93.212 24.464 1.00 0.00 O ATOM 733 OG1 THR 96 14.566 96.467 22.369 1.00 0.00 O ATOM 734 CG2 THR 96 13.891 94.157 22.177 1.00 0.00 C ATOM 735 N ALA 97 14.343 92.725 24.515 1.00 0.00 N ATOM 736 CA ALA 97 14.345 91.243 24.670 1.00 0.00 C ATOM 737 CB ALA 97 13.775 90.671 25.952 1.00 0.00 C ATOM 738 C ALA 97 14.497 90.651 23.205 1.00 0.00 C ATOM 739 O ALA 97 15.606 90.625 22.648 1.00 0.00 O ATOM 740 N ARG 98 13.480 89.974 22.681 1.00 0.00 N ATOM 741 CA ARG 98 13.711 89.184 21.422 1.00 0.00 C ATOM 742 CB ARG 98 14.653 87.981 21.442 1.00 0.00 C ATOM 743 C ARG 98 12.522 88.502 21.010 1.00 0.00 C ATOM 744 O ARG 98 11.834 87.944 21.881 1.00 0.00 O ATOM 745 CG ARG 98 14.881 87.359 20.062 1.00 0.00 C ATOM 746 CD ARG 98 15.897 86.216 20.065 1.00 0.00 C ATOM 747 NE ARG 98 15.272 85.061 20.767 1.00 0.00 N ATOM 748 CZ ARG 98 16.057 84.105 21.341 1.00 0.00 C ATOM 749 NH1 ARG 98 17.360 84.450 21.124 1.00 0.00 N ATOM 750 NH2 ARG 98 15.234 83.174 21.908 1.00 0.00 N ATOM 751 N GLY 99 12.180 88.501 19.716 1.00 0.00 N ATOM 752 CA GLY 99 10.617 88.016 19.314 1.00 0.00 C ATOM 753 C GLY 99 10.867 86.964 17.986 1.00 0.00 C ATOM 754 O GLY 99 11.941 86.784 17.424 1.00 0.00 O ATOM 755 N TRP 100 9.773 86.503 17.387 1.00 0.00 N ATOM 756 CA TRP 100 10.105 85.676 16.112 1.00 0.00 C ATOM 757 CB TRP 100 10.358 84.214 16.463 1.00 0.00 C ATOM 758 C TRP 100 8.987 86.257 15.006 1.00 0.00 C ATOM 759 O TRP 100 8.075 86.990 15.369 1.00 0.00 O ATOM 760 CG TRP 100 9.181 83.525 17.110 1.00 0.00 C ATOM 761 CD1 TRP 100 8.801 83.506 18.422 1.00 0.00 C ATOM 762 CD2 TRP 100 8.186 82.721 16.459 1.00 0.00 C ATOM 763 NE1 TRP 100 7.711 82.801 18.655 1.00 0.00 N ATOM 764 CE2 TRP 100 7.280 82.285 17.461 1.00 0.00 C ATOM 765 CE3 TRP 100 7.968 82.324 15.123 1.00 0.00 C ATOM 766 CZ2 TRP 100 6.159 81.460 17.169 1.00 0.00 C ATOM 767 CZ3 TRP 100 6.845 81.496 14.822 1.00 0.00 C ATOM 768 CH2 TRP 100 5.961 81.079 15.848 1.00 0.00 C ATOM 769 N GLU 101 8.928 85.514 13.909 1.00 0.00 N ATOM 770 CA GLU 101 7.848 85.414 12.940 1.00 0.00 C ATOM 771 CB GLU 101 6.380 85.573 13.323 1.00 0.00 C ATOM 772 C GLU 101 7.879 86.305 11.763 1.00 0.00 C ATOM 773 O GLU 101 7.719 87.513 11.947 1.00 0.00 O ATOM 774 CG GLU 101 5.419 85.381 12.148 1.00 0.00 C ATOM 775 CD GLU 101 3.999 85.553 12.670 1.00 0.00 C ATOM 776 OE1 GLU 101 3.845 85.807 13.894 1.00 0.00 O ATOM 777 OE2 GLU 101 3.049 85.433 11.850 1.00 0.00 O ATOM 778 N CYS 102 7.905 85.728 10.562 1.00 0.00 N ATOM 779 CA CYS 102 8.043 86.325 9.188 1.00 0.00 C ATOM 780 CB CYS 102 7.495 85.283 8.205 1.00 0.00 C ATOM 781 C CYS 102 7.236 87.522 8.636 1.00 0.00 C ATOM 782 O CYS 102 6.001 87.486 8.669 1.00 0.00 O ATOM 783 SG CYS 102 8.348 84.155 8.075 1.00 0.00 S ATOM 784 N THR 103 7.920 88.494 8.020 1.00 0.00 N ATOM 785 CA THR 103 7.219 89.594 7.321 1.00 0.00 C ATOM 786 CB THR 103 7.876 90.928 7.772 1.00 0.00 C ATOM 787 C THR 103 7.263 89.538 5.765 1.00 0.00 C ATOM 788 O THR 103 8.024 88.800 5.135 1.00 0.00 O ATOM 789 OG1 THR 103 9.230 90.973 7.347 1.00 0.00 O ATOM 790 CG2 THR 103 7.821 91.029 9.306 1.00 0.00 C ATOM 791 N LYS 104 6.411 90.375 5.183 1.00 0.00 N ATOM 792 CA LYS 104 6.288 90.465 3.708 1.00 0.00 C ATOM 793 CB LYS 104 5.167 90.354 2.644 1.00 0.00 C ATOM 794 C LYS 104 7.624 90.831 3.088 1.00 0.00 C ATOM 795 O LYS 104 8.143 90.174 2.184 1.00 0.00 O ATOM 796 CG LYS 104 5.674 90.505 1.208 1.00 0.00 C ATOM 797 CD LYS 104 4.580 90.326 0.152 1.00 0.00 C ATOM 798 CE LYS 104 5.077 90.525 -1.282 1.00 0.00 C ATOM 799 NZ LYS 104 3.955 90.358 -2.233 1.00 0.00 N ATOM 800 N ASP 105 8.192 91.925 3.609 1.00 0.00 N ATOM 801 CA ASP 105 9.498 92.393 3.043 1.00 0.00 C ATOM 802 CB ASP 105 9.803 93.803 3.542 1.00 0.00 C ATOM 803 C ASP 105 10.613 91.538 3.362 1.00 0.00 C ATOM 804 O ASP 105 11.493 91.476 2.496 1.00 0.00 O ATOM 805 CG ASP 105 8.873 94.769 2.821 1.00 0.00 C ATOM 806 OD1 ASP 105 8.237 94.342 1.820 1.00 0.00 O ATOM 807 OD2 ASP 105 8.786 95.946 3.261 1.00 0.00 O ATOM 808 N ARG 106 10.658 90.833 4.492 1.00 0.00 N ATOM 809 CA ARG 106 11.644 89.857 4.878 1.00 0.00 C ATOM 810 CB ARG 106 11.274 89.238 6.233 1.00 0.00 C ATOM 811 C ARG 106 11.579 88.681 3.977 1.00 0.00 C ATOM 812 O ARG 106 12.610 88.107 3.659 1.00 0.00 O ATOM 813 CG ARG 106 11.353 90.228 7.397 1.00 0.00 C ATOM 814 CD ARG 106 12.752 90.812 7.610 1.00 0.00 C ATOM 815 NE ARG 106 13.644 89.697 8.031 1.00 0.00 N ATOM 816 CZ ARG 106 14.999 89.861 8.008 1.00 0.00 C ATOM 817 NH1 ARG 106 15.257 91.125 7.563 1.00 0.00 N ATOM 818 NH2 ARG 106 15.567 88.696 8.439 1.00 0.00 N ATOM 819 N CYS 107 10.426 88.260 3.464 1.00 0.00 N ATOM 820 CA CYS 107 10.356 87.237 2.452 1.00 0.00 C ATOM 821 CB CYS 107 8.886 87.021 2.099 1.00 0.00 C ATOM 822 C CYS 107 11.647 86.648 1.617 1.00 0.00 C ATOM 823 O CYS 107 12.125 85.514 1.577 1.00 0.00 O ATOM 824 SG CYS 107 8.703 85.987 1.143 1.00 0.00 S ATOM 825 N GLY 108 12.066 87.635 0.823 1.00 0.00 N ATOM 826 CA GLY 108 13.174 87.110 -0.084 1.00 0.00 C ATOM 827 C GLY 108 13.887 87.975 1.133 1.00 0.00 C ATOM 828 O GLY 108 13.587 89.159 1.357 1.00 0.00 O ATOM 829 N GLU 109 14.977 87.372 1.611 1.00 0.00 N ATOM 830 CA GLU 109 16.001 88.486 2.085 1.00 0.00 C ATOM 831 CB GLU 109 15.531 89.016 3.453 1.00 0.00 C ATOM 832 C GLU 109 17.431 87.656 2.179 1.00 0.00 C ATOM 833 O GLU 109 17.333 86.460 2.394 1.00 0.00 O ATOM 834 CG GLU 109 16.392 90.159 3.993 1.00 0.00 C ATOM 835 CD GLU 109 16.316 91.313 3.004 1.00 0.00 C ATOM 836 OE1 GLU 109 16.921 91.193 1.906 1.00 0.00 O ATOM 837 OE2 GLU 109 15.650 92.332 3.333 1.00 0.00 O ATOM 838 N VAL 110 18.598 88.298 2.184 1.00 0.00 N ATOM 839 CA VAL 110 19.693 87.567 2.492 1.00 0.00 C ATOM 840 CB VAL 110 20.744 87.526 1.365 1.00 0.00 C ATOM 841 C VAL 110 20.447 87.861 3.794 1.00 0.00 C ATOM 842 O VAL 110 21.644 87.562 3.931 1.00 0.00 O ATOM 843 CG1 VAL 110 20.249 86.836 0.092 1.00 0.00 C ATOM 844 CG2 VAL 110 21.208 88.913 0.913 1.00 0.00 C ATOM 845 N ARG 111 19.794 88.579 4.701 1.00 0.00 N ATOM 846 CA ARG 111 20.651 88.929 5.928 1.00 0.00 C ATOM 847 CB ARG 111 20.954 90.431 5.987 1.00 0.00 C ATOM 848 C ARG 111 19.667 88.356 7.101 1.00 0.00 C ATOM 849 O ARG 111 18.431 88.336 7.054 1.00 0.00 O ATOM 850 CG ARG 111 21.799 90.929 4.813 1.00 0.00 C ATOM 851 CD ARG 111 22.055 92.437 4.839 1.00 0.00 C ATOM 852 NE ARG 111 22.901 92.769 3.658 1.00 0.00 N ATOM 853 CZ ARG 111 23.255 94.065 3.415 1.00 0.00 C ATOM 854 NH1 ARG 111 22.705 94.838 4.395 1.00 0.00 N ATOM 855 NH2 ARG 111 24.022 94.081 2.284 1.00 0.00 N ATOM 856 N ASN 112 20.378 87.892 8.131 1.00 0.00 N ATOM 857 CA ASN 112 19.975 87.164 9.238 1.00 0.00 C ATOM 858 CB ASN 112 19.654 85.666 9.213 1.00 0.00 C ATOM 859 C ASN 112 21.081 86.975 10.269 1.00 0.00 C ATOM 860 O ASN 112 22.105 86.359 10.022 1.00 0.00 O ATOM 861 CG ASN 112 19.180 85.264 10.602 1.00 0.00 C ATOM 862 OD1 ASN 112 19.418 85.969 11.582 1.00 0.00 O ATOM 863 ND2 ASN 112 18.484 84.106 10.763 1.00 0.00 N ATOM 864 N GLU 113 20.827 87.551 11.435 1.00 0.00 N ATOM 865 CA GLU 113 21.730 87.491 12.597 1.00 0.00 C ATOM 866 CB GLU 113 22.745 88.631 12.484 1.00 0.00 C ATOM 867 C GLU 113 20.657 87.649 13.675 1.00 0.00 C ATOM 868 O GLU 113 20.153 88.763 13.766 1.00 0.00 O ATOM 869 CG GLU 113 23.744 88.675 13.641 1.00 0.00 C ATOM 870 CD GLU 113 24.756 89.773 13.348 1.00 0.00 C ATOM 871 OE1 GLU 113 24.687 90.359 12.235 1.00 0.00 O ATOM 872 OE2 GLU 113 25.611 90.041 14.234 1.00 0.00 O ATOM 873 N GLU 114 20.269 86.636 14.431 1.00 0.00 N ATOM 874 CA GLU 114 19.332 86.751 15.440 1.00 0.00 C ATOM 875 CB GLU 114 19.042 87.848 16.456 1.00 0.00 C ATOM 876 C GLU 114 17.928 86.403 15.027 1.00 0.00 C ATOM 877 O GLU 114 16.947 87.101 15.322 1.00 0.00 O ATOM 878 CG GLU 114 20.156 88.031 17.490 1.00 0.00 C ATOM 879 CD GLU 114 19.778 89.203 18.384 1.00 0.00 C ATOM 880 OE1 GLU 114 18.711 89.823 18.130 1.00 0.00 O ATOM 881 OE2 GLU 114 20.552 89.494 19.335 1.00 0.00 O ATOM 882 N ASN 115 17.847 85.257 14.342 1.00 0.00 N ATOM 883 CA ASN 115 16.541 84.745 13.804 1.00 0.00 C ATOM 884 CB ASN 115 16.402 84.662 12.274 1.00 0.00 C ATOM 885 C ASN 115 16.591 83.295 14.040 1.00 0.00 C ATOM 886 O ASN 115 17.696 82.678 13.796 1.00 0.00 O ATOM 887 CG ASN 115 16.402 86.081 11.724 1.00 0.00 C ATOM 888 OD1 ASN 115 17.443 86.610 11.337 1.00 0.00 O ATOM 889 ND2 ASN 115 15.234 86.774 11.660 1.00 0.00 N ATOM 890 N ALA 116 15.478 82.708 14.431 1.00 0.00 N ATOM 891 CA ALA 116 15.352 81.232 14.686 1.00 0.00 C ATOM 892 CB ALA 116 14.211 80.942 15.703 1.00 0.00 C ATOM 893 C ALA 116 14.721 80.493 13.548 1.00 0.00 C ATOM 894 O ALA 116 14.799 79.264 13.528 1.00 0.00 O ATOM 895 N CYS 117 14.242 81.198 12.539 1.00 0.00 N ATOM 896 CA CYS 117 13.655 80.712 11.324 1.00 0.00 C ATOM 897 CB CYS 117 12.130 80.525 11.353 1.00 0.00 C ATOM 898 C CYS 117 14.118 81.795 10.357 1.00 0.00 C ATOM 899 O CYS 117 14.382 82.943 10.724 1.00 0.00 O ATOM 900 SG CYS 117 11.436 81.747 11.562 1.00 0.00 S ATOM 901 N HIS 118 14.246 81.392 9.086 1.00 0.00 N ATOM 902 CA HIS 118 14.754 82.180 7.996 1.00 0.00 C ATOM 903 CB HIS 118 15.788 81.486 7.146 1.00 0.00 C ATOM 904 C HIS 118 13.563 82.634 7.155 1.00 0.00 C ATOM 905 O HIS 118 12.574 81.832 6.952 1.00 0.00 O ATOM 906 CG HIS 118 17.053 81.182 7.894 1.00 0.00 C ATOM 907 ND1 HIS 118 18.060 82.100 8.110 1.00 0.00 N ATOM 908 CD2 HIS 118 17.481 80.044 8.487 1.00 0.00 C ATOM 909 CE1 HIS 118 19.030 81.565 8.787 1.00 0.00 C ATOM 910 NE2 HIS 118 18.712 80.309 9.034 1.00 0.00 N ATOM 911 N CYS 119 13.670 83.836 6.626 1.00 0.00 N ATOM 912 CA CYS 119 12.644 84.421 5.766 1.00 0.00 C ATOM 913 CB CYS 119 12.082 85.739 6.290 1.00 0.00 C ATOM 914 C CYS 119 13.425 84.784 4.527 1.00 0.00 C ATOM 915 O CYS 119 13.632 85.932 4.133 1.00 0.00 O ATOM 916 SG CYS 119 11.430 85.591 7.543 1.00 0.00 S ATOM 917 N SER 120 13.835 83.707 3.859 1.00 0.00 N ATOM 918 CA SER 120 14.636 83.644 2.621 1.00 0.00 C ATOM 919 CB SER 120 16.135 83.869 2.789 1.00 0.00 C ATOM 920 C SER 120 14.212 82.329 1.741 1.00 0.00 C ATOM 921 O SER 120 13.947 81.232 2.244 1.00 0.00 O ATOM 922 OG SER 120 16.707 82.808 3.540 1.00 0.00 O ATOM 923 N GLU 121 14.310 82.532 0.429 1.00 0.00 N ATOM 924 CA GLU 121 14.035 81.447 -0.424 1.00 0.00 C ATOM 925 CB GLU 121 14.341 81.929 -1.863 1.00 0.00 C ATOM 926 C GLU 121 14.798 80.187 -0.166 1.00 0.00 C ATOM 927 O GLU 121 14.284 79.068 -0.333 1.00 0.00 O ATOM 928 CG GLU 121 13.945 80.919 -2.942 1.00 0.00 C ATOM 929 CD GLU 121 14.205 81.555 -4.300 1.00 0.00 C ATOM 930 OE1 GLU 121 14.701 82.713 -4.326 1.00 0.00 O ATOM 931 OE2 GLU 121 13.912 80.891 -5.330 1.00 0.00 O ATOM 932 N ASP 122 16.029 80.367 0.311 1.00 0.00 N ATOM 933 CA ASP 122 16.934 79.201 0.586 1.00 0.00 C ATOM 934 CB ASP 122 18.375 79.659 0.839 1.00 0.00 C ATOM 935 C ASP 122 16.399 78.336 1.696 1.00 0.00 C ATOM 936 O ASP 122 16.751 77.147 1.778 1.00 0.00 O ATOM 937 CG ASP 122 18.967 80.107 -0.490 1.00 0.00 C ATOM 938 OD1 ASP 122 18.343 79.812 -1.544 1.00 0.00 O ATOM 939 OD2 ASP 122 20.050 80.750 -0.469 1.00 0.00 O ATOM 940 N CYS 123 15.503 78.895 2.509 1.00 0.00 N ATOM 941 CA CYS 123 14.885 78.198 3.630 1.00 0.00 C ATOM 942 CB CYS 123 13.979 79.112 4.494 1.00 0.00 C ATOM 943 C CYS 123 13.937 77.105 3.071 1.00 0.00 C ATOM 944 O CYS 123 13.701 76.071 3.694 1.00 0.00 O ATOM 945 SG CYS 123 12.860 79.605 3.772 1.00 0.00 S ATOM 946 N LEU 124 13.404 77.368 1.879 1.00 0.00 N ATOM 947 CA LEU 124 12.512 76.409 1.262 1.00 0.00 C ATOM 948 CB LEU 124 11.733 76.994 0.078 1.00 0.00 C ATOM 949 C LEU 124 13.301 75.092 0.867 1.00 0.00 C ATOM 950 O LEU 124 12.894 73.938 0.976 1.00 0.00 O ATOM 951 CG LEU 124 10.764 76.001 -0.565 1.00 0.00 C ATOM 952 CD1 LEU 124 9.672 75.469 0.363 1.00 0.00 C ATOM 953 CD2 LEU 124 9.979 76.544 -1.759 1.00 0.00 C ATOM 954 N SER 125 14.493 75.392 0.367 1.00 0.00 N ATOM 955 CA SER 125 15.305 74.244 -0.143 1.00 0.00 C ATOM 956 CB SER 125 16.429 74.791 -1.083 1.00 0.00 C ATOM 957 C SER 125 15.938 73.559 1.115 1.00 0.00 C ATOM 958 O SER 125 15.871 72.347 1.339 1.00 0.00 O ATOM 959 OG SER 125 15.855 75.372 -2.245 1.00 0.00 O ATOM 960 N ARG 126 16.534 74.408 1.939 1.00 0.00 N ATOM 961 CA ARG 126 17.204 73.870 3.131 1.00 0.00 C ATOM 962 CB ARG 126 18.112 74.953 3.771 1.00 0.00 C ATOM 963 C ARG 126 16.358 73.362 4.178 1.00 0.00 C ATOM 964 O ARG 126 16.699 72.407 4.892 1.00 0.00 O ATOM 965 CG ARG 126 19.356 75.274 2.939 1.00 0.00 C ATOM 966 CD ARG 126 20.210 76.400 3.526 1.00 0.00 C ATOM 967 NE ARG 126 21.369 76.605 2.613 1.00 0.00 N ATOM 968 CZ ARG 126 22.226 77.648 2.821 1.00 0.00 C ATOM 969 NH1 ARG 126 21.789 78.332 3.918 1.00 0.00 N ATOM 970 NH2 ARG 126 23.184 77.599 1.850 1.00 0.00 N ATOM 971 N GLY 127 15.225 74.033 4.275 1.00 0.00 N ATOM 972 CA GLY 127 14.128 73.440 5.319 1.00 0.00 C ATOM 973 C GLY 127 14.157 74.222 6.616 1.00 0.00 C ATOM 974 O GLY 127 14.246 73.557 7.648 1.00 0.00 O ATOM 975 N ASP 128 14.093 75.545 6.578 1.00 0.00 N ATOM 976 CA ASP 128 14.135 76.290 7.834 1.00 0.00 C ATOM 977 CB ASP 128 15.404 76.846 8.497 1.00 0.00 C ATOM 978 C ASP 128 13.248 77.369 7.501 1.00 0.00 C ATOM 979 O ASP 128 13.564 78.538 7.657 1.00 0.00 O ATOM 980 CG ASP 128 15.035 77.322 9.894 1.00 0.00 C ATOM 981 OD1 ASP 128 13.929 76.955 10.371 1.00 0.00 O ATOM 982 OD2 ASP 128 15.854 78.060 10.503 1.00 0.00 O ATOM 983 N CYS 129 12.021 77.030 7.083 1.00 0.00 N ATOM 984 CA CYS 129 11.032 78.121 6.633 1.00 0.00 C ATOM 985 CB CYS 129 10.069 77.606 5.569 1.00 0.00 C ATOM 986 C CYS 129 10.099 78.390 7.960 1.00 0.00 C ATOM 987 O CYS 129 9.572 77.499 8.627 1.00 0.00 O ATOM 988 SG CYS 129 10.733 77.226 4.372 1.00 0.00 S ATOM 989 N CYS 130 9.901 79.679 8.207 1.00 0.00 N ATOM 990 CA CYS 130 9.100 80.006 9.299 1.00 0.00 C ATOM 991 CB CYS 130 8.942 81.541 9.316 1.00 0.00 C ATOM 992 C CYS 130 7.815 79.136 9.422 1.00 0.00 C ATOM 993 O CYS 130 7.446 78.466 8.439 1.00 0.00 O ATOM 994 SG CYS 130 10.172 82.212 9.547 1.00 0.00 S ATOM 995 N THR 131 7.143 79.214 10.552 1.00 0.00 N ATOM 996 CA THR 131 5.895 78.470 10.633 1.00 0.00 C ATOM 997 CB THR 131 5.361 78.579 12.104 1.00 0.00 C ATOM 998 C THR 131 4.763 79.148 9.729 1.00 0.00 C ATOM 999 O THR 131 3.688 78.618 9.452 1.00 0.00 O ATOM 1000 OG1 THR 131 5.124 79.938 12.437 1.00 0.00 O ATOM 1001 CG2 THR 131 6.405 77.991 13.069 1.00 0.00 C ATOM 1002 N ASN 132 5.020 80.429 9.480 1.00 0.00 N ATOM 1003 CA ASN 132 4.000 81.159 8.719 1.00 0.00 C ATOM 1004 CB ASN 132 3.502 82.476 9.328 1.00 0.00 C ATOM 1005 C ASN 132 4.697 81.793 7.554 1.00 0.00 C ATOM 1006 O ASN 132 4.315 82.885 7.122 1.00 0.00 O ATOM 1007 CG ASN 132 2.743 82.147 10.606 1.00 0.00 C ATOM 1008 OD1 ASN 132 1.638 81.608 10.567 1.00 0.00 O ATOM 1009 ND2 ASN 132 3.297 82.452 11.810 1.00 0.00 N ATOM 1010 N TYR 133 5.681 81.093 7.000 1.00 0.00 N ATOM 1011 CA TYR 133 6.460 81.614 5.839 1.00 0.00 C ATOM 1012 CB TYR 133 7.614 80.653 5.477 1.00 0.00 C ATOM 1013 C TYR 133 5.653 81.546 4.554 1.00 0.00 C ATOM 1014 O TYR 133 6.020 82.097 3.518 1.00 0.00 O ATOM 1015 CG TYR 133 7.003 79.390 4.974 1.00 0.00 C ATOM 1016 CD1 TYR 133 6.625 79.286 3.630 1.00 0.00 C ATOM 1017 CD2 TYR 133 6.799 78.280 5.822 1.00 0.00 C ATOM 1018 CE1 TYR 133 6.047 78.108 3.117 1.00 0.00 C ATOM 1019 CE2 TYR 133 6.214 77.073 5.317 1.00 0.00 C ATOM 1020 CZ TYR 133 5.844 77.009 3.958 1.00 0.00 C ATOM 1021 OH TYR 133 5.274 75.872 3.428 1.00 0.00 O ATOM 1022 N GLN 134 4.549 80.807 4.627 1.00 0.00 N ATOM 1023 CA GLN 134 3.656 80.633 3.488 1.00 0.00 C ATOM 1024 CB GLN 134 3.032 79.263 3.197 1.00 0.00 C ATOM 1025 C GLN 134 2.504 81.565 3.704 1.00 0.00 C ATOM 1026 O GLN 134 2.005 82.128 2.724 1.00 0.00 O ATOM 1027 CG GLN 134 2.161 79.244 1.939 1.00 0.00 C ATOM 1028 CD GLN 134 1.623 77.831 1.760 1.00 0.00 C ATOM 1029 OE1 GLN 134 0.680 77.422 2.436 1.00 0.00 O ATOM 1030 NE2 GLN 134 2.194 77.009 0.840 1.00 0.00 N ATOM 1031 N VAL 135 2.058 81.745 4.948 1.00 0.00 N ATOM 1032 CA VAL 135 1.015 82.664 5.301 1.00 0.00 C ATOM 1033 CB VAL 135 0.645 82.569 6.781 1.00 0.00 C ATOM 1034 C VAL 135 1.451 84.117 4.830 1.00 0.00 C ATOM 1035 O VAL 135 0.675 84.939 4.338 1.00 0.00 O ATOM 1036 CG1 VAL 135 -0.320 83.663 7.240 1.00 0.00 C ATOM 1037 CG2 VAL 135 -0.036 81.251 7.156 1.00 0.00 C ATOM 1038 N VAL 136 2.680 84.439 5.221 1.00 0.00 N ATOM 1039 CA VAL 136 3.061 85.849 5.015 1.00 0.00 C ATOM 1040 CB VAL 136 4.183 86.295 5.952 1.00 0.00 C ATOM 1041 C VAL 136 3.649 86.080 3.603 1.00 0.00 C ATOM 1042 O VAL 136 3.394 87.056 2.892 1.00 0.00 O ATOM 1043 CG1 VAL 136 4.668 87.723 5.687 1.00 0.00 C ATOM 1044 CG2 VAL 136 3.788 86.275 7.430 1.00 0.00 C ATOM 1045 N CYS 137 4.473 85.109 3.233 1.00 0.00 N ATOM 1046 CA CYS 137 5.174 85.246 1.906 1.00 0.00 C ATOM 1047 CB CYS 137 6.645 84.773 1.910 1.00 0.00 C ATOM 1048 C CYS 137 4.380 84.609 0.725 1.00 0.00 C ATOM 1049 O CYS 137 4.534 84.981 -0.429 1.00 0.00 O ATOM 1050 SG CYS 137 7.464 85.554 2.768 1.00 0.00 S ATOM 1051 N LYS 138 3.609 83.570 1.022 1.00 0.00 N ATOM 1052 CA LYS 138 2.827 82.952 -0.019 1.00 0.00 C ATOM 1053 CB LYS 138 2.356 81.598 0.558 1.00 0.00 C ATOM 1054 C LYS 138 1.445 83.386 0.261 1.00 0.00 C ATOM 1055 O LYS 138 0.472 82.623 0.359 1.00 0.00 O ATOM 1056 CG LYS 138 3.506 80.664 0.940 1.00 0.00 C ATOM 1057 CD LYS 138 4.384 80.257 -0.245 1.00 0.00 C ATOM 1058 CE LYS 138 5.526 79.312 0.134 1.00 0.00 C ATOM 1059 NZ LYS 138 6.366 79.032 -1.050 1.00 0.00 N ATOM 1060 N GLY 139 1.349 84.712 0.356 1.00 0.00 N ATOM 1061 CA GLY 139 -0.048 85.329 0.742 1.00 0.00 C ATOM 1062 C GLY 139 -0.535 85.925 -0.657 1.00 0.00 C ATOM 1063 O GLY 139 0.201 86.142 -1.624 1.00 0.00 O ATOM 1064 N GLU 140 -1.830 86.212 -0.667 1.00 0.00 N ATOM 1065 CA GLU 140 -2.469 86.776 -1.822 1.00 0.00 C ATOM 1066 CB GLU 140 -3.919 87.078 -1.608 1.00 0.00 C ATOM 1067 C GLU 140 -2.092 87.898 -2.784 1.00 0.00 C ATOM 1068 O GLU 140 -2.922 88.821 -2.752 1.00 0.00 O ATOM 1069 CG GLU 140 -4.783 85.827 -1.431 1.00 0.00 C ATOM 1070 CD GLU 140 -6.213 86.276 -1.169 1.00 0.00 C ATOM 1071 OE1 GLU 140 -6.441 87.514 -1.098 1.00 0.00 O ATOM 1072 OE2 GLU 140 -7.097 85.389 -1.037 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 68.86 55.7 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 78.22 51.6 62 100.0 62 ARMSMC BURIED . . . . . . . . 38.20 65.4 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.33 53.8 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 80.98 52.8 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 85.60 46.2 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 68.59 69.2 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.33 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 77.00 61.1 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 78.05 56.2 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 105.51 28.6 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.18 61.5 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 57.48 66.7 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 42.39 80.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 108.89 0.0 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.24 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 70.24 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 75.34 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 58.74 50.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.93 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.93 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0651 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 3.33 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.54 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.12 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 3.56 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.64 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.45 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 5.68 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.43 112 100.0 112 CRMSSC BURIED . . . . . . . . 5.50 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.35 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.48 240 100.0 240 CRMSALL BURIED . . . . . . . . 4.05 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.168 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.492 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 1.372 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.328 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.706 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 1.421 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.244 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 4.427 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.347 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 4.027 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.208 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.423 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 2.717 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 10 31 38 41 44 45 45 DISTCA CA (P) 22.22 68.89 84.44 91.11 97.78 45 DISTCA CA (RMS) 0.84 1.34 1.60 1.77 2.47 DISTCA ALL (N) 51 153 230 280 330 345 345 DISTALL ALL (P) 14.78 44.35 66.67 81.16 95.65 345 DISTALL ALL (RMS) 0.82 1.29 1.78 2.25 3.48 DISTALL END of the results output