####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS174_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS174_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 56 - 77 4.89 11.91 LCS_AVERAGE: 53.19 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 80 - 91 1.96 13.91 LCS_AVERAGE: 20.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 61 - 65 0.94 16.29 LCS_AVERAGE: 9.88 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 5 22 3 3 6 9 10 14 14 15 17 18 20 21 23 24 26 27 29 29 29 31 LCS_GDT S 57 S 57 3 7 22 3 3 6 10 12 14 15 17 18 18 20 22 24 24 26 27 29 29 30 31 LCS_GDT C 58 C 58 4 7 22 3 5 7 10 12 14 15 17 18 18 20 22 24 24 26 27 29 29 30 31 LCS_GDT K 59 K 59 4 7 22 3 5 7 10 12 14 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT G 60 G 60 4 7 22 3 7 8 10 12 14 15 17 18 18 20 22 24 24 25 26 27 28 30 31 LCS_GDT R 61 R 61 5 7 22 4 7 8 10 12 12 15 17 18 18 20 22 24 24 25 26 28 29 30 31 LCS_GDT C 62 C 62 5 7 22 4 5 7 10 12 14 17 18 20 20 24 25 25 26 26 27 29 29 30 31 LCS_GDT F 63 F 63 5 7 22 4 5 7 11 13 15 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT E 64 E 64 5 7 22 4 5 6 8 10 13 17 18 20 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT L 65 L 65 5 7 22 3 3 6 10 13 15 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT Q 66 Q 66 4 7 22 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT E 67 E 67 4 7 22 4 7 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT V 68 V 68 4 7 22 3 3 4 5 6 9 13 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT G 69 G 69 3 7 22 3 5 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT P 70 P 70 4 6 22 2 3 4 7 9 10 15 16 18 21 24 25 25 26 26 27 29 29 30 31 LCS_GDT P 71 P 71 4 6 22 0 3 6 8 11 16 16 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT D 72 D 72 4 8 22 3 5 8 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT C 73 C 73 4 8 22 3 5 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT R 74 R 74 4 8 22 4 5 8 10 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT C 75 C 75 4 8 22 4 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT D 76 D 76 4 8 22 3 4 7 10 12 16 16 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT N 77 N 77 3 8 22 3 4 7 10 12 14 15 17 18 18 20 22 24 24 25 27 29 29 29 30 LCS_GDT L 78 L 78 3 8 21 4 6 8 10 12 14 15 17 18 18 20 22 24 24 26 26 27 29 30 31 LCS_GDT C 79 C 79 3 8 21 4 6 8 10 12 14 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT K 80 K 80 4 12 21 4 4 7 10 11 12 14 15 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT S 81 S 81 4 12 21 3 4 8 9 12 13 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT Y 82 Y 82 4 12 21 4 7 8 10 12 14 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT S 83 S 83 4 12 21 4 6 7 10 12 13 15 17 18 18 20 22 24 24 25 27 27 28 30 31 LCS_GDT S 84 S 84 4 12 21 3 5 7 9 11 14 15 16 18 18 20 22 24 24 26 27 28 29 30 31 LCS_GDT C 85 C 85 4 12 20 3 6 8 10 12 13 15 17 18 18 22 22 24 26 26 27 28 29 30 31 LCS_GDT C 86 C 86 4 12 20 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT H 87 H 87 4 12 20 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 29 30 LCS_GDT D 88 D 88 4 12 20 3 6 8 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT F 89 F 89 4 12 20 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT D 90 D 90 4 12 20 3 7 8 10 11 14 15 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT E 91 E 91 4 12 20 3 7 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT L 92 L 92 4 4 20 4 7 8 10 12 13 17 18 20 21 24 25 25 26 26 27 29 29 30 31 LCS_GDT C 93 C 93 4 4 20 4 6 8 11 13 15 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT L 94 L 94 4 4 20 3 5 8 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT K 95 K 95 3 4 20 0 3 6 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_AVERAGE LCS_A: 27.94 ( 9.88 20.75 53.19 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 GDT PERCENT_AT 10.00 17.50 20.00 27.50 32.50 40.00 42.50 47.50 52.50 55.00 60.00 62.50 62.50 65.00 65.00 67.50 72.50 72.50 75.00 77.50 GDT RMS_LOCAL 0.30 0.69 0.79 1.32 1.51 2.16 2.19 2.45 2.71 2.93 3.28 3.47 3.47 3.72 3.72 4.22 4.82 4.82 5.77 5.95 GDT RMS_ALL_AT 8.78 8.94 8.88 9.49 9.45 9.56 9.60 9.61 9.61 9.63 9.56 9.57 9.57 9.50 9.50 9.71 9.76 9.76 8.76 8.70 # Checking swapping # possible swapping detected: E 67 E 67 # possible swapping detected: F 89 F 89 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 11.405 0 0.546 0.546 13.074 0.000 0.000 LGA S 57 S 57 10.779 0 0.190 0.839 12.035 0.000 0.000 LGA C 58 C 58 9.547 0 0.234 0.341 11.845 0.238 5.714 LGA K 59 K 59 16.430 0 0.434 0.694 25.492 0.000 0.000 LGA G 60 G 60 17.801 0 0.026 0.026 17.801 0.000 0.000 LGA R 61 R 61 11.874 0 0.121 1.527 14.721 2.857 1.039 LGA C 62 C 62 6.530 0 0.459 0.864 8.951 11.905 15.873 LGA F 63 F 63 3.120 0 0.662 1.205 8.115 45.000 37.273 LGA E 64 E 64 6.116 0 0.381 1.060 11.377 30.952 15.079 LGA L 65 L 65 2.650 0 0.606 1.356 4.883 47.262 43.810 LGA Q 66 Q 66 1.412 0 0.502 1.184 4.464 75.119 63.175 LGA E 67 E 67 0.318 0 0.185 1.607 5.833 82.024 64.550 LGA V 68 V 68 4.015 0 0.252 0.252 8.411 45.357 28.707 LGA G 69 G 69 2.732 0 0.455 0.455 3.300 55.357 55.357 LGA P 70 P 70 6.115 0 0.628 0.620 8.753 18.214 13.673 LGA P 71 P 71 4.626 0 0.330 0.725 7.445 37.738 27.959 LGA D 72 D 72 1.780 3 0.671 0.649 2.956 66.905 41.548 LGA C 73 C 73 0.986 0 0.351 0.720 3.095 81.548 77.778 LGA R 74 R 74 2.725 0 0.462 1.300 13.886 61.548 27.446 LGA C 75 C 75 0.856 0 0.108 0.883 4.584 90.476 75.079 LGA D 76 D 76 3.880 0 0.122 1.318 7.748 31.190 25.298 LGA N 77 N 77 9.557 0 0.471 0.852 13.269 2.619 1.369 LGA L 78 L 78 15.034 0 0.153 1.181 20.110 0.000 0.000 LGA C 79 C 79 12.541 0 0.477 0.766 16.173 0.000 0.476 LGA K 80 K 80 17.580 0 0.334 0.717 21.801 0.000 0.000 LGA S 81 S 81 23.234 0 0.193 0.658 25.831 0.000 0.000 LGA Y 82 Y 82 21.047 0 0.376 1.451 25.769 0.000 0.000 LGA S 83 S 83 18.380 0 0.405 0.717 20.117 0.000 0.000 LGA S 84 S 84 11.473 0 0.406 0.528 14.156 0.476 0.317 LGA C 85 C 85 8.233 0 0.682 0.890 9.778 9.167 6.429 LGA C 86 C 86 1.234 0 0.599 1.100 3.719 74.167 68.810 LGA H 87 H 87 0.816 0 0.577 1.079 6.491 83.810 60.143 LGA D 88 D 88 3.012 0 0.283 1.270 8.986 55.714 33.988 LGA F 89 F 89 1.370 0 0.491 1.309 7.138 77.262 52.987 LGA D 90 D 90 4.893 0 0.529 1.217 10.587 47.262 25.060 LGA E 91 E 91 1.746 0 0.543 0.993 7.599 61.905 45.079 LGA L 92 L 92 6.766 0 0.172 0.412 13.113 18.333 9.345 LGA C 93 C 93 2.938 0 0.758 0.818 4.716 59.762 53.413 LGA L 94 L 94 3.235 0 0.425 1.389 9.449 49.048 28.631 LGA K 95 K 95 2.963 0 0.083 0.838 10.368 47.619 34.074 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 8.421 8.266 9.137 34.271 25.987 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 19 2.45 40.000 37.172 0.746 LGA_LOCAL RMSD: 2.448 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.606 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 8.421 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.841320 * X + -0.217166 * Y + 0.494995 * Z + 19.399462 Y_new = 0.540332 * X + -0.363172 * Y + 0.759044 * Z + 45.489609 Z_new = 0.014930 * X + 0.906060 * Y + 0.422886 * Z + 46.051731 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.570690 -0.014930 1.134117 [DEG: 147.2897 -0.8554 64.9801 ] ZXZ: 2.563722 1.134169 0.016476 [DEG: 146.8905 64.9831 0.9440 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS174_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS174_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 19 2.45 37.172 8.42 REMARK ---------------------------------------------------------- MOLECULE T0543TS174_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 29.286 74.133 29.543 1.00 0.00 N ATOM 423 CA GLY 56 28.556 73.342 28.967 1.00 0.00 C ATOM 424 C GLY 56 27.389 74.315 28.677 1.00 0.00 C ATOM 425 O GLY 56 26.770 74.971 29.537 1.00 0.00 O ATOM 426 N SER 57 27.070 74.375 27.401 1.00 0.00 N ATOM 427 CA SER 57 26.023 75.053 26.779 1.00 0.00 C ATOM 428 CB SER 57 26.794 76.187 26.091 1.00 0.00 C ATOM 429 C SER 57 24.720 74.459 26.347 1.00 0.00 C ATOM 430 O SER 57 24.438 73.323 26.723 1.00 0.00 O ATOM 431 OG SER 57 27.406 77.021 27.064 1.00 0.00 O ATOM 432 N CYS 58 23.938 75.178 25.534 1.00 0.00 N ATOM 433 CA CYS 58 22.753 74.732 24.946 1.00 0.00 C ATOM 434 CB CYS 58 22.342 73.424 24.228 1.00 0.00 C ATOM 435 C CYS 58 21.499 74.662 25.705 1.00 0.00 C ATOM 436 O CYS 58 20.478 74.990 25.110 1.00 0.00 O ATOM 437 SG CYS 58 23.080 73.205 23.034 1.00 0.00 S ATOM 438 N LYS 59 21.503 74.292 26.991 1.00 0.00 N ATOM 439 CA LYS 59 20.262 74.401 27.749 1.00 0.00 C ATOM 440 CB LYS 59 19.456 75.532 28.353 1.00 0.00 C ATOM 441 C LYS 59 19.331 73.258 27.478 1.00 0.00 C ATOM 442 O LYS 59 19.450 72.199 28.099 1.00 0.00 O ATOM 443 CG LYS 59 20.165 76.233 29.515 1.00 0.00 C ATOM 444 CD LYS 59 19.347 77.368 30.134 1.00 0.00 C ATOM 445 CE LYS 59 20.060 78.077 31.288 1.00 0.00 C ATOM 446 NZ LYS 59 19.202 79.156 31.826 1.00 0.00 N ATOM 447 N GLY 60 18.418 73.413 26.495 1.00 0.00 N ATOM 448 CA GLY 60 17.507 72.315 26.198 1.00 0.00 C ATOM 449 C GLY 60 18.113 71.147 25.439 1.00 0.00 C ATOM 450 O GLY 60 17.406 70.282 24.948 1.00 0.00 O ATOM 451 N ARG 61 19.416 71.229 25.224 1.00 0.00 N ATOM 452 CA ARG 61 20.246 70.359 24.383 1.00 0.00 C ATOM 453 CB ARG 61 20.057 68.903 24.835 1.00 0.00 C ATOM 454 C ARG 61 20.255 70.836 22.896 1.00 0.00 C ATOM 455 O ARG 61 21.124 70.422 22.129 1.00 0.00 O ATOM 456 CG ARG 61 20.524 68.643 26.270 1.00 0.00 C ATOM 457 CD ARG 61 22.043 68.715 26.440 1.00 0.00 C ATOM 458 NE ARG 61 22.354 68.326 27.845 1.00 0.00 N ATOM 459 CZ ARG 61 22.330 69.267 28.834 1.00 0.00 C ATOM 460 NH1 ARG 61 21.996 70.461 28.265 1.00 0.00 N ATOM 461 NH2 ARG 61 22.649 68.645 30.006 1.00 0.00 N ATOM 462 N CYS 62 19.325 71.708 22.525 1.00 0.00 N ATOM 463 CA CYS 62 19.221 72.205 21.228 1.00 0.00 C ATOM 464 CB CYS 62 20.260 73.315 21.041 1.00 0.00 C ATOM 465 C CYS 62 18.283 71.075 20.535 1.00 0.00 C ATOM 466 O CYS 62 17.057 71.014 20.318 1.00 0.00 O ATOM 467 SG CYS 62 20.180 73.924 19.761 1.00 0.00 S ATOM 468 N PHE 63 19.135 70.252 19.916 1.00 0.00 N ATOM 469 CA PHE 63 18.387 69.137 19.170 1.00 0.00 C ATOM 470 CB PHE 63 18.450 69.781 17.782 1.00 0.00 C ATOM 471 C PHE 63 19.711 68.444 19.511 1.00 0.00 C ATOM 472 O PHE 63 20.808 68.851 19.116 1.00 0.00 O ATOM 473 CG PHE 63 17.656 68.927 16.854 1.00 0.00 C ATOM 474 CD1 PHE 63 16.245 68.974 16.816 1.00 0.00 C ATOM 475 CD2 PHE 63 18.314 68.041 15.981 1.00 0.00 C ATOM 476 CE1 PHE 63 15.494 68.156 15.923 1.00 0.00 C ATOM 477 CE2 PHE 63 17.586 67.211 15.076 1.00 0.00 C ATOM 478 CZ PHE 63 16.169 67.269 15.049 1.00 0.00 C ATOM 479 N GLU 64 19.551 67.407 20.331 1.00 0.00 N ATOM 480 CA GLU 64 20.624 66.551 20.826 1.00 0.00 C ATOM 481 CB GLU 64 20.172 65.262 21.524 1.00 0.00 C ATOM 482 C GLU 64 20.872 65.513 19.629 1.00 0.00 C ATOM 483 O GLU 64 20.663 64.309 19.784 1.00 0.00 O ATOM 484 CG GLU 64 19.353 65.511 22.793 1.00 0.00 C ATOM 485 CD GLU 64 18.808 64.172 23.270 1.00 0.00 C ATOM 486 OE1 GLU 64 19.043 63.153 22.568 1.00 0.00 O ATOM 487 OE2 GLU 64 18.150 64.152 24.345 1.00 0.00 O ATOM 488 N LEU 65 21.297 66.021 18.481 1.00 0.00 N ATOM 489 CA LEU 65 21.783 65.476 17.382 1.00 0.00 C ATOM 490 CB LEU 65 21.415 66.281 16.124 1.00 0.00 C ATOM 491 C LEU 65 23.269 65.186 17.141 1.00 0.00 C ATOM 492 O LEU 65 24.120 66.013 17.464 1.00 0.00 O ATOM 493 CG LEU 65 21.924 65.651 14.826 1.00 0.00 C ATOM 494 CD1 LEU 65 21.268 64.323 14.452 1.00 0.00 C ATOM 495 CD2 LEU 65 21.732 66.507 13.574 1.00 0.00 C ATOM 496 N GLN 66 23.536 64.006 16.600 1.00 0.00 N ATOM 497 CA GLN 66 24.904 63.599 16.340 1.00 0.00 C ATOM 498 CB GLN 66 25.786 64.670 15.622 1.00 0.00 C ATOM 499 C GLN 66 25.844 63.357 17.488 1.00 0.00 C ATOM 500 O GLN 66 27.009 63.742 17.456 1.00 0.00 O ATOM 501 CG GLN 66 25.255 65.076 14.246 1.00 0.00 C ATOM 502 CD GLN 66 26.237 66.065 13.635 1.00 0.00 C ATOM 503 OE1 GLN 66 27.191 66.492 14.283 1.00 0.00 O ATOM 504 NE2 GLN 66 26.056 66.483 12.354 1.00 0.00 N ATOM 505 N GLU 67 25.304 62.753 18.535 1.00 0.00 N ATOM 506 CA GLU 67 25.491 62.080 19.783 1.00 0.00 C ATOM 507 CB GLU 67 24.242 61.918 20.653 1.00 0.00 C ATOM 508 C GLU 67 26.187 60.895 20.123 1.00 0.00 C ATOM 509 O GLU 67 25.456 59.915 19.970 1.00 0.00 O ATOM 510 CG GLU 67 24.518 61.247 22.000 1.00 0.00 C ATOM 511 CD GLU 67 25.349 62.206 22.841 1.00 0.00 C ATOM 512 OE1 GLU 67 25.511 63.380 22.413 1.00 0.00 O ATOM 513 OE2 GLU 67 25.833 61.777 23.922 1.00 0.00 O ATOM 514 N VAL 68 27.460 60.806 20.493 1.00 0.00 N ATOM 515 CA VAL 68 28.138 59.659 20.994 1.00 0.00 C ATOM 516 CB VAL 68 27.813 58.154 20.839 1.00 0.00 C ATOM 517 C VAL 68 29.354 60.222 20.292 1.00 0.00 C ATOM 518 O VAL 68 29.352 60.554 19.110 1.00 0.00 O ATOM 519 CG1 VAL 68 28.874 57.234 21.448 1.00 0.00 C ATOM 520 CG2 VAL 68 26.496 57.742 21.501 1.00 0.00 C ATOM 521 N GLY 69 30.296 60.408 21.185 1.00 0.00 N ATOM 522 CA GLY 69 31.655 60.991 20.863 1.00 0.00 C ATOM 523 C GLY 69 31.601 62.458 20.884 1.00 0.00 C ATOM 524 O GLY 69 32.420 63.092 21.546 1.00 0.00 O ATOM 525 N PRO 70 30.537 63.034 20.338 1.00 0.00 N ATOM 526 CA PRO 70 30.291 64.466 20.402 1.00 0.00 C ATOM 527 CB PRO 70 29.051 64.757 19.546 1.00 0.00 C ATOM 528 C PRO 70 29.736 65.047 21.705 1.00 0.00 C ATOM 529 O PRO 70 29.302 66.208 21.733 1.00 0.00 O ATOM 530 CG PRO 70 27.993 63.652 19.609 1.00 0.00 C ATOM 531 CD PRO 70 28.583 62.241 19.634 1.00 0.00 C ATOM 532 N PRO 71 29.943 64.304 22.789 1.00 0.00 N ATOM 533 CA PRO 71 29.796 64.563 24.198 1.00 0.00 C ATOM 534 CB PRO 71 29.907 63.306 25.071 1.00 0.00 C ATOM 535 C PRO 71 30.578 65.757 24.623 1.00 0.00 C ATOM 536 O PRO 71 30.086 66.576 25.400 1.00 0.00 O ATOM 537 CG PRO 71 29.487 62.023 24.350 1.00 0.00 C ATOM 538 CD PRO 71 29.907 61.982 22.879 1.00 0.00 C ATOM 539 N ASP 72 31.787 65.884 24.082 1.00 0.00 N ATOM 540 CA ASP 72 32.718 66.979 24.275 1.00 0.00 C ATOM 541 CB ASP 72 34.070 66.785 23.577 1.00 0.00 C ATOM 542 C ASP 72 32.077 68.380 24.049 1.00 0.00 C ATOM 543 O ASP 72 32.432 69.384 24.668 1.00 0.00 O ATOM 544 CG ASP 72 34.840 65.712 24.334 1.00 0.00 C ATOM 545 OD1 ASP 72 34.392 65.339 25.451 1.00 0.00 O ATOM 546 OD2 ASP 72 35.887 65.251 23.805 1.00 0.00 O ATOM 547 N CYS 73 31.157 68.384 23.090 1.00 0.00 N ATOM 548 CA CYS 73 30.329 69.541 22.763 1.00 0.00 C ATOM 549 CB CYS 73 30.720 70.994 23.070 1.00 0.00 C ATOM 550 C CYS 73 29.828 69.736 21.375 1.00 0.00 C ATOM 551 O CYS 73 30.028 70.768 20.717 1.00 0.00 O ATOM 552 SG CYS 73 30.818 71.248 24.463 1.00 0.00 S ATOM 553 N ARG 74 29.193 68.680 20.872 1.00 0.00 N ATOM 554 CA ARG 74 28.592 68.742 19.470 1.00 0.00 C ATOM 555 CB ARG 74 28.901 67.483 18.666 1.00 0.00 C ATOM 556 C ARG 74 26.991 68.731 19.845 1.00 0.00 C ATOM 557 O ARG 74 26.116 67.991 19.377 1.00 0.00 O ATOM 558 CG ARG 74 30.396 67.265 18.423 1.00 0.00 C ATOM 559 CD ARG 74 31.018 68.291 17.473 1.00 0.00 C ATOM 560 NE ARG 74 32.465 67.961 17.342 1.00 0.00 N ATOM 561 CZ ARG 74 32.870 67.014 16.446 1.00 0.00 C ATOM 562 NH1 ARG 74 31.759 66.537 15.813 1.00 0.00 N ATOM 563 NH2 ARG 74 34.228 66.912 16.533 1.00 0.00 N ATOM 564 N CYS 75 26.665 69.830 20.535 1.00 0.00 N ATOM 565 CA CYS 75 25.393 70.319 20.814 1.00 0.00 C ATOM 566 CB CYS 75 25.241 71.716 21.420 1.00 0.00 C ATOM 567 C CYS 75 24.397 70.361 19.559 1.00 0.00 C ATOM 568 O CYS 75 23.267 70.821 19.705 1.00 0.00 O ATOM 569 SG CYS 75 23.889 72.042 21.700 1.00 0.00 S ATOM 570 N ASP 76 24.817 69.816 18.419 1.00 0.00 N ATOM 571 CA ASP 76 23.858 69.818 17.368 1.00 0.00 C ATOM 572 CB ASP 76 22.418 69.408 17.756 1.00 0.00 C ATOM 573 C ASP 76 23.942 70.846 16.209 1.00 0.00 C ATOM 574 O ASP 76 24.996 71.452 15.976 1.00 0.00 O ATOM 575 CG ASP 76 21.614 69.243 16.475 1.00 0.00 C ATOM 576 OD1 ASP 76 22.195 69.462 15.379 1.00 0.00 O ATOM 577 OD2 ASP 76 20.406 68.894 16.574 1.00 0.00 O ATOM 578 N ASN 77 22.846 70.982 15.456 1.00 0.00 N ATOM 579 CA ASN 77 22.863 71.876 14.327 1.00 0.00 C ATOM 580 CB ASN 77 22.429 73.220 14.909 1.00 0.00 C ATOM 581 C ASN 77 24.188 72.010 13.531 1.00 0.00 C ATOM 582 O ASN 77 24.787 73.063 13.527 1.00 0.00 O ATOM 583 CG ASN 77 22.189 74.178 13.751 1.00 0.00 C ATOM 584 OD1 ASN 77 21.321 73.951 12.910 1.00 0.00 O ATOM 585 ND2 ASN 77 22.946 75.302 13.644 1.00 0.00 N ATOM 586 N LEU 78 24.628 70.927 12.902 1.00 0.00 N ATOM 587 CA LEU 78 25.827 70.916 12.142 1.00 0.00 C ATOM 588 CB LEU 78 25.508 71.547 10.784 1.00 0.00 C ATOM 589 C LEU 78 27.223 70.975 12.769 1.00 0.00 C ATOM 590 O LEU 78 28.234 70.605 12.164 1.00 0.00 O ATOM 591 CG LEU 78 24.438 70.788 9.995 1.00 0.00 C ATOM 592 CD1 LEU 78 24.021 71.443 8.679 1.00 0.00 C ATOM 593 CD2 LEU 78 24.827 69.371 9.578 1.00 0.00 C ATOM 594 N CYS 79 27.278 71.598 13.945 1.00 0.00 N ATOM 595 CA CYS 79 28.530 71.752 14.681 1.00 0.00 C ATOM 596 CB CYS 79 29.076 70.721 15.679 1.00 0.00 C ATOM 597 C CYS 79 29.582 72.514 13.746 1.00 0.00 C ATOM 598 O CYS 79 30.608 72.047 13.237 1.00 0.00 O ATOM 599 SG CYS 79 28.338 70.695 16.893 1.00 0.00 S ATOM 600 N LYS 80 29.316 73.812 13.659 1.00 0.00 N ATOM 601 CA LYS 80 30.362 74.620 12.901 1.00 0.00 C ATOM 602 CB LYS 80 31.640 75.242 13.511 1.00 0.00 C ATOM 603 C LYS 80 30.661 74.185 11.542 1.00 0.00 C ATOM 604 O LYS 80 31.752 74.507 11.071 1.00 0.00 O ATOM 605 CG LYS 80 31.354 76.349 14.528 1.00 0.00 C ATOM 606 CD LYS 80 32.617 76.993 15.102 1.00 0.00 C ATOM 607 CE LYS 80 33.298 77.969 14.141 1.00 0.00 C ATOM 608 NZ LYS 80 34.478 78.583 14.793 1.00 0.00 N ATOM 609 N SER 81 29.806 73.397 10.885 1.00 0.00 N ATOM 610 CA SER 81 30.046 72.825 9.561 1.00 0.00 C ATOM 611 CB SER 81 30.757 73.683 8.511 1.00 0.00 C ATOM 612 C SER 81 30.215 71.336 9.941 1.00 0.00 C ATOM 613 O SER 81 29.396 70.464 9.670 1.00 0.00 O ATOM 614 OG SER 81 30.909 72.952 7.304 1.00 0.00 O ATOM 615 N TYR 82 31.348 71.075 10.605 1.00 0.00 N ATOM 616 CA TYR 82 31.592 69.794 11.268 1.00 0.00 C ATOM 617 CB TYR 82 32.221 71.060 10.656 1.00 0.00 C ATOM 618 C TYR 82 32.746 70.213 12.206 1.00 0.00 C ATOM 619 O TYR 82 33.861 69.696 12.122 1.00 0.00 O ATOM 620 CG TYR 82 33.699 70.873 10.661 1.00 0.00 C ATOM 621 CD1 TYR 82 34.302 70.055 9.696 1.00 0.00 C ATOM 622 CD2 TYR 82 34.522 71.508 11.618 1.00 0.00 C ATOM 623 CE1 TYR 82 35.696 69.856 9.667 1.00 0.00 C ATOM 624 CE2 TYR 82 35.941 71.317 11.602 1.00 0.00 C ATOM 625 CZ TYR 82 36.510 70.486 10.615 1.00 0.00 C ATOM 626 OH TYR 82 37.870 70.269 10.564 1.00 0.00 O ATOM 627 N SER 83 32.466 71.162 13.089 1.00 0.00 N ATOM 628 CA SER 83 33.206 71.668 14.159 1.00 0.00 C ATOM 629 CB SER 83 33.504 73.171 14.129 1.00 0.00 C ATOM 630 C SER 83 32.677 71.469 15.426 1.00 0.00 C ATOM 631 O SER 83 31.472 71.241 15.494 1.00 0.00 O ATOM 632 OG SER 83 34.217 73.551 15.296 1.00 0.00 O ATOM 633 N SER 84 33.459 71.494 16.492 1.00 0.00 N ATOM 634 CA SER 84 33.070 71.219 17.933 1.00 0.00 C ATOM 635 CB SER 84 34.290 71.204 18.905 1.00 0.00 C ATOM 636 C SER 84 32.948 72.668 18.559 1.00 0.00 C ATOM 637 O SER 84 33.870 73.273 19.107 1.00 0.00 O ATOM 638 OG SER 84 35.182 70.158 18.552 1.00 0.00 O ATOM 639 N CYS 85 31.716 73.175 18.477 1.00 0.00 N ATOM 640 CA CYS 85 31.265 74.524 18.469 1.00 0.00 C ATOM 641 CB CYS 85 30.416 75.249 17.419 1.00 0.00 C ATOM 642 C CYS 85 30.873 75.012 19.798 1.00 0.00 C ATOM 643 O CYS 85 30.589 76.184 20.012 1.00 0.00 O ATOM 644 SG CYS 85 29.088 74.749 17.354 1.00 0.00 S ATOM 645 N CYS 86 30.876 74.098 20.754 1.00 0.00 N ATOM 646 CA CYS 86 30.376 74.428 22.167 1.00 0.00 C ATOM 647 CB CYS 86 30.371 73.103 22.931 1.00 0.00 C ATOM 648 C CYS 86 30.137 75.828 22.852 1.00 0.00 C ATOM 649 O CYS 86 29.008 76.149 23.218 1.00 0.00 O ATOM 650 SG CYS 86 29.874 73.241 24.254 1.00 0.00 S ATOM 651 N HIS 87 31.229 76.547 23.072 1.00 0.00 N ATOM 652 CA HIS 87 31.208 77.780 23.767 1.00 0.00 C ATOM 653 CB HIS 87 32.271 78.779 23.286 1.00 0.00 C ATOM 654 C HIS 87 30.013 78.704 23.312 1.00 0.00 C ATOM 655 O HIS 87 29.967 79.329 22.252 1.00 0.00 O ATOM 656 CG HIS 87 32.253 80.069 24.052 1.00 0.00 C ATOM 657 ND1 HIS 87 32.664 80.192 25.364 1.00 0.00 N ATOM 658 CD2 HIS 87 31.868 81.312 23.684 1.00 0.00 C ATOM 659 CE1 HIS 87 32.543 81.420 25.768 1.00 0.00 C ATOM 660 NE2 HIS 87 32.058 82.134 24.768 1.00 0.00 N ATOM 661 N ASP 88 29.044 78.740 24.215 1.00 0.00 N ATOM 662 CA ASP 88 27.859 79.622 23.955 1.00 0.00 C ATOM 663 CB ASP 88 28.290 81.108 24.030 1.00 0.00 C ATOM 664 C ASP 88 26.855 78.927 23.109 1.00 0.00 C ATOM 665 O ASP 88 25.641 79.131 23.304 1.00 0.00 O ATOM 666 CG ASP 88 28.570 81.443 25.489 1.00 0.00 C ATOM 667 OD1 ASP 88 28.177 80.631 26.368 1.00 0.00 O ATOM 668 OD2 ASP 88 29.181 82.515 25.742 1.00 0.00 O ATOM 669 N PHE 89 27.363 78.154 22.151 1.00 0.00 N ATOM 670 CA PHE 89 26.506 77.432 21.181 1.00 0.00 C ATOM 671 CB PHE 89 25.632 76.381 21.866 1.00 0.00 C ATOM 672 C PHE 89 25.701 78.329 20.322 1.00 0.00 C ATOM 673 O PHE 89 24.561 77.958 20.042 1.00 0.00 O ATOM 674 CG PHE 89 26.540 75.421 22.552 1.00 0.00 C ATOM 675 CD1 PHE 89 26.782 75.480 23.943 1.00 0.00 C ATOM 676 CD2 PHE 89 27.187 74.414 21.811 1.00 0.00 C ATOM 677 CE1 PHE 89 27.650 74.554 24.592 1.00 0.00 C ATOM 678 CE2 PHE 89 28.061 73.474 22.435 1.00 0.00 C ATOM 679 CZ PHE 89 28.294 73.548 23.833 1.00 0.00 C ATOM 680 N ASP 90 26.191 79.512 19.963 1.00 0.00 N ATOM 681 CA ASP 90 25.560 80.568 19.248 1.00 0.00 C ATOM 682 CB ASP 90 25.247 80.258 17.782 1.00 0.00 C ATOM 683 C ASP 90 24.287 81.059 19.911 1.00 0.00 C ATOM 684 O ASP 90 23.206 80.680 19.493 1.00 0.00 O ATOM 685 CG ASP 90 24.823 81.554 17.107 1.00 0.00 C ATOM 686 OD1 ASP 90 24.759 82.596 17.814 1.00 0.00 O ATOM 687 OD2 ASP 90 24.557 81.522 15.876 1.00 0.00 O ATOM 688 N GLU 91 24.413 81.827 20.989 1.00 0.00 N ATOM 689 CA GLU 91 23.325 82.379 21.705 1.00 0.00 C ATOM 690 CB GLU 91 22.425 83.182 20.788 1.00 0.00 C ATOM 691 C GLU 91 22.481 81.376 22.470 1.00 0.00 C ATOM 692 O GLU 91 21.277 81.418 22.339 1.00 0.00 O ATOM 693 CG GLU 91 23.114 84.400 20.169 1.00 0.00 C ATOM 694 CD GLU 91 22.109 85.101 19.267 1.00 0.00 C ATOM 695 OE1 GLU 91 20.961 84.594 19.154 1.00 0.00 O ATOM 696 OE2 GLU 91 22.476 86.153 18.678 1.00 0.00 O ATOM 697 N LEU 92 23.096 80.446 23.190 1.00 0.00 N ATOM 698 CA LEU 92 22.431 79.412 23.896 1.00 0.00 C ATOM 699 CB LEU 92 21.730 80.030 25.112 1.00 0.00 C ATOM 700 C LEU 92 22.078 78.169 22.996 1.00 0.00 C ATOM 701 O LEU 92 22.387 77.036 23.362 1.00 0.00 O ATOM 702 CG LEU 92 22.690 80.713 26.088 1.00 0.00 C ATOM 703 CD1 LEU 92 22.019 81.429 27.259 1.00 0.00 C ATOM 704 CD2 LEU 92 23.690 79.779 26.770 1.00 0.00 C ATOM 705 N CYS 93 21.372 78.383 21.880 1.00 0.00 N ATOM 706 CA CYS 93 21.061 77.254 21.071 1.00 0.00 C ATOM 707 CB CYS 93 19.907 76.443 21.648 1.00 0.00 C ATOM 708 C CYS 93 20.475 78.424 20.083 1.00 0.00 C ATOM 709 O CYS 93 19.740 79.326 20.466 1.00 0.00 O ATOM 710 SG CYS 93 19.542 75.350 20.818 1.00 0.00 S ATOM 711 N LEU 94 21.000 78.385 18.865 1.00 0.00 N ATOM 712 CA LEU 94 20.741 79.202 17.763 1.00 0.00 C ATOM 713 CB LEU 94 21.710 78.942 16.606 1.00 0.00 C ATOM 714 C LEU 94 19.471 79.074 16.934 1.00 0.00 C ATOM 715 O LEU 94 18.895 78.006 16.727 1.00 0.00 O ATOM 716 CG LEU 94 21.534 79.908 15.434 1.00 0.00 C ATOM 717 CD1 LEU 94 21.862 81.368 15.746 1.00 0.00 C ATOM 718 CD2 LEU 94 22.397 79.604 14.210 1.00 0.00 C ATOM 719 N LYS 95 18.926 80.250 16.653 1.00 0.00 N ATOM 720 CA LYS 95 17.586 80.651 16.045 1.00 0.00 C ATOM 721 CB LYS 95 16.838 81.723 16.822 1.00 0.00 C ATOM 722 C LYS 95 17.825 81.069 14.541 1.00 0.00 C ATOM 723 O LYS 95 18.905 81.502 14.139 1.00 0.00 O ATOM 724 CG LYS 95 16.452 81.292 18.238 1.00 0.00 C ATOM 725 CD LYS 95 15.657 82.351 19.006 1.00 0.00 C ATOM 726 CE LYS 95 15.225 81.901 20.402 1.00 0.00 C ATOM 727 NZ LYS 95 14.418 82.960 21.049 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 102.98 19.2 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 103.10 19.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 102.68 18.2 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.60 19.4 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 103.01 17.1 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 98.20 16.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 108.92 27.3 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.19 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 67.65 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 86.79 33.3 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 68.67 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.54 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 92.32 50.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 88.17 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 94.17 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.16 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 53.16 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 37.56 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 92.13 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.42 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.42 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2105 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.98 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.73 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.44 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.97 142 100.0 142 CRMSMC BURIED . . . . . . . . 6.89 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.21 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 9.19 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.10 103 100.0 103 CRMSSC BURIED . . . . . . . . 7.44 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.24 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.93 219 100.0 219 CRMSALL BURIED . . . . . . . . 7.13 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.355 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 7.933 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 5.830 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.352 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 7.918 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 5.891 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.730 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 7.879 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 9.682 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 6.280 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.932 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 8.647 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 6.067 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 7 17 27 40 40 DISTCA CA (P) 0.00 5.00 17.50 42.50 67.50 40 DISTCA CA (RMS) 0.00 1.85 2.49 3.52 5.37 DISTCA ALL (N) 3 23 47 101 209 303 303 DISTALL ALL (P) 0.99 7.59 15.51 33.33 68.98 303 DISTALL ALL (RMS) 0.76 1.50 2.11 3.30 5.83 DISTALL END of the results output