####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS171_1_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS171_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 18 66 - 83 4.94 15.17 LCS_AVERAGE: 40.94 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 70 - 77 1.78 14.84 LONGEST_CONTINUOUS_SEGMENT: 8 71 - 78 1.54 14.82 LCS_AVERAGE: 16.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 72 - 76 0.92 15.07 LCS_AVERAGE: 9.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 5 12 3 3 4 4 5 7 7 8 9 9 10 10 11 11 12 12 12 12 12 12 LCS_GDT S 57 S 57 3 5 12 3 3 4 5 5 7 7 8 9 9 10 10 11 11 15 16 17 18 18 20 LCS_GDT C 58 C 58 4 5 16 3 3 4 4 4 5 6 7 8 9 10 12 14 16 16 17 17 18 18 20 LCS_GDT K 59 K 59 4 5 16 3 3 4 5 5 7 7 8 9 13 13 14 15 16 16 17 20 22 24 25 LCS_GDT G 60 G 60 4 5 16 3 3 4 5 5 7 7 8 10 13 13 14 15 16 18 20 21 22 24 25 LCS_GDT R 61 R 61 4 5 16 3 3 4 5 5 7 7 8 10 13 13 14 15 16 18 20 21 22 24 25 LCS_GDT C 62 C 62 4 7 16 3 3 5 5 7 7 7 8 10 13 13 14 15 16 18 20 21 22 24 25 LCS_GDT F 63 F 63 4 7 16 3 4 5 5 7 7 7 8 10 13 13 14 15 16 16 18 19 22 24 25 LCS_GDT E 64 E 64 4 7 16 3 4 5 5 7 7 7 8 10 13 13 14 16 18 18 21 22 22 25 26 LCS_GDT L 65 L 65 4 7 16 3 4 5 5 7 7 7 8 10 13 13 15 16 18 18 20 21 22 25 26 LCS_GDT Q 66 Q 66 4 7 18 3 4 5 5 7 7 8 9 10 13 15 16 17 18 18 21 22 22 25 26 LCS_GDT E 67 E 67 3 7 18 3 3 4 5 7 7 8 9 11 13 15 16 17 18 18 21 22 22 25 26 LCS_GDT V 68 V 68 3 7 18 3 3 4 5 7 7 8 9 12 14 15 16 20 21 23 24 24 24 25 26 LCS_GDT G 69 G 69 3 7 18 3 3 4 5 7 7 8 10 12 15 17 19 21 22 23 24 24 24 25 26 LCS_GDT P 70 P 70 3 8 18 3 3 4 5 7 7 9 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT P 71 P 71 4 8 18 2 4 6 7 8 8 9 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT D 72 D 72 5 8 18 3 4 6 7 8 8 9 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT C 73 C 73 5 8 18 3 4 6 7 8 8 9 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT R 74 R 74 5 8 18 3 4 6 7 8 8 9 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT C 75 C 75 5 8 18 3 4 5 7 8 8 9 11 12 14 15 19 21 22 23 24 24 24 25 26 LCS_GDT D 76 D 76 5 8 18 3 4 6 7 8 8 9 11 12 14 16 19 21 22 23 24 24 24 25 26 LCS_GDT N 77 N 77 4 8 18 3 4 6 7 8 8 9 11 12 13 15 17 19 22 23 24 24 24 25 26 LCS_GDT L 78 L 78 4 8 18 3 4 4 5 8 8 9 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT C 79 C 79 3 5 18 3 5 5 5 5 5 8 9 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT K 80 K 80 4 7 18 3 5 6 6 8 10 10 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT S 81 S 81 4 7 18 3 5 6 6 8 10 10 11 12 13 15 17 18 21 23 24 24 24 25 26 LCS_GDT Y 82 Y 82 4 7 18 3 5 6 6 8 10 10 11 12 13 15 16 17 18 18 20 21 22 24 26 LCS_GDT S 83 S 83 4 7 18 3 4 4 4 6 10 10 11 12 13 15 16 17 18 18 20 21 23 25 26 LCS_GDT S 84 S 84 3 7 16 3 3 6 6 8 10 10 11 12 13 15 16 17 18 18 20 21 24 25 26 LCS_GDT C 85 C 85 3 7 16 3 3 4 5 8 10 10 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT C 86 C 86 3 7 16 3 3 4 5 8 10 10 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT H 87 H 87 3 6 16 3 3 4 6 7 10 10 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT D 88 D 88 3 6 16 3 5 6 6 8 10 10 11 12 13 14 16 19 22 23 24 24 24 25 26 LCS_GDT F 89 F 89 3 6 16 3 5 6 6 8 10 10 11 12 13 13 16 21 22 23 24 24 24 25 26 LCS_GDT D 90 D 90 3 5 16 3 5 5 5 5 6 9 11 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT E 91 E 91 3 5 15 3 3 3 3 5 6 6 9 12 13 15 19 21 22 23 24 24 24 25 26 LCS_GDT L 92 L 92 3 4 14 3 3 3 3 5 6 7 9 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT C 93 C 93 3 4 14 3 3 3 4 5 6 7 10 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT L 94 L 94 3 4 12 3 3 3 5 6 6 7 10 12 16 17 19 21 22 23 24 24 24 25 26 LCS_GDT K 95 K 95 3 4 12 3 3 3 5 6 6 7 10 12 16 17 19 21 22 23 24 24 24 25 26 LCS_AVERAGE LCS_A: 22.02 ( 9.12 16.00 40.94 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 5 6 7 8 10 10 11 12 16 17 19 21 22 23 24 24 24 25 26 GDT PERCENT_AT 7.50 12.50 15.00 17.50 20.00 25.00 25.00 27.50 30.00 40.00 42.50 47.50 52.50 55.00 57.50 60.00 60.00 60.00 62.50 65.00 GDT RMS_LOCAL 0.08 0.56 0.85 1.25 1.54 2.09 2.09 2.60 3.19 3.97 4.08 4.42 4.70 4.84 5.00 5.22 5.22 5.22 5.55 5.87 GDT RMS_ALL_AT 23.86 20.03 19.60 14.93 14.82 19.88 19.88 20.07 18.99 14.24 14.05 13.89 13.81 13.70 13.75 13.57 13.57 13.57 13.42 13.52 # Checking swapping # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 32.504 0 0.357 0.357 32.715 0.000 0.000 LGA S 57 S 57 33.039 0 0.138 0.575 33.799 0.000 0.000 LGA C 58 C 58 33.939 0 0.286 0.283 34.131 0.000 0.000 LGA K 59 K 59 33.291 0 0.135 1.260 38.260 0.000 0.000 LGA G 60 G 60 34.657 0 0.649 0.649 35.082 0.000 0.000 LGA R 61 R 61 32.051 0 0.699 1.339 34.285 0.000 0.000 LGA C 62 C 62 27.404 0 0.136 0.802 29.004 0.000 0.000 LGA F 63 F 63 28.583 0 0.606 1.236 31.135 0.000 0.000 LGA E 64 E 64 27.127 0 0.063 1.130 27.827 0.000 0.000 LGA L 65 L 65 28.223 0 0.693 0.999 29.919 0.000 0.000 LGA Q 66 Q 66 27.095 0 0.029 0.927 27.354 0.000 0.000 LGA E 67 E 67 23.045 0 0.411 0.949 25.057 0.000 0.000 LGA V 68 V 68 21.753 0 0.107 0.146 23.747 0.000 0.000 LGA G 69 G 69 23.488 0 0.193 0.193 26.854 0.000 0.000 LGA P 70 P 70 24.089 0 0.128 0.270 25.098 0.000 0.000 LGA P 71 P 71 22.732 0 0.631 0.661 25.721 0.000 0.000 LGA D 72 D 72 19.727 3 0.677 0.623 21.361 0.000 0.000 LGA C 73 C 73 16.392 0 0.255 0.793 17.770 0.000 0.000 LGA R 74 R 74 14.538 0 0.085 1.197 18.599 0.000 0.000 LGA C 75 C 75 12.895 0 0.416 0.837 13.642 0.000 0.000 LGA D 76 D 76 11.911 0 0.078 1.215 12.735 0.000 0.060 LGA N 77 N 77 10.046 0 0.688 0.973 11.332 1.548 0.774 LGA L 78 L 78 10.501 0 0.613 1.382 15.192 0.119 0.060 LGA C 79 C 79 9.080 0 0.643 0.786 11.651 6.548 4.365 LGA K 80 K 80 2.010 0 0.615 1.269 5.048 64.048 64.127 LGA S 81 S 81 1.678 0 0.151 0.137 3.322 79.405 70.794 LGA Y 82 Y 82 1.354 0 0.458 0.434 8.021 66.190 42.103 LGA S 83 S 83 3.391 0 0.423 0.771 5.778 65.119 50.556 LGA S 84 S 84 1.272 0 0.703 0.620 3.755 79.286 69.603 LGA C 85 C 85 2.572 0 0.021 0.141 3.824 62.857 57.460 LGA C 86 C 86 2.275 0 0.586 0.775 4.555 54.524 59.444 LGA H 87 H 87 2.604 0 0.644 1.191 4.528 69.048 53.095 LGA D 88 D 88 1.809 0 0.565 0.888 5.078 77.143 57.381 LGA F 89 F 89 2.582 0 0.446 1.251 9.433 69.048 35.065 LGA D 90 D 90 4.901 0 0.606 0.871 7.673 29.881 20.833 LGA E 91 E 91 10.412 0 0.559 1.209 13.005 1.190 0.529 LGA L 92 L 92 12.842 0 0.657 1.264 15.191 0.000 0.000 LGA C 93 C 93 13.946 0 0.620 0.616 16.511 0.000 0.000 LGA L 94 L 94 18.903 0 0.602 1.003 21.056 0.000 0.000 LGA K 95 K 95 24.998 0 0.601 1.336 29.846 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 11.144 11.049 12.040 18.149 14.656 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 11 2.60 29.375 26.566 0.407 LGA_LOCAL RMSD: 2.599 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 20.075 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 11.144 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.546433 * X + 0.426881 * Y + 0.720544 * Z + 5.687052 Y_new = 0.649093 * X + 0.759534 * Y + 0.042267 * Z + 18.162180 Z_new = -0.529234 * X + 0.490796 * Y + -0.692120 * Z + 32.136959 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.270535 0.557698 2.524772 [DEG: 130.0920 31.9537 144.6588 ] ZXZ: 1.629389 2.335219 -0.823064 [DEG: 93.3571 133.7982 -47.1581 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS171_1_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS171_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 11 2.60 26.566 11.14 REMARK ---------------------------------------------------------- MOLECULE T0543TS171_1_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 2vj2_A ATOM 371 N GLY 56 43.694 98.189 35.188 1.00 0.00 N ATOM 372 CA GLY 56 43.230 99.414 35.762 1.00 0.00 C ATOM 373 C GLY 56 42.980 99.182 37.208 1.00 0.00 C ATOM 374 O GLY 56 43.370 99.994 38.046 1.00 0.00 O ATOM 375 N SER 57 42.316 98.067 37.553 1.00 0.00 N ATOM 376 CA SER 57 42.124 97.842 38.949 1.00 0.00 C ATOM 377 CB SER 57 41.171 98.852 39.610 1.00 0.00 C ATOM 378 OG SER 57 39.859 98.697 39.090 1.00 0.00 O ATOM 379 C SER 57 41.520 96.496 39.131 1.00 0.00 C ATOM 380 O SER 57 41.024 95.881 38.190 1.00 0.00 O ATOM 381 N CYS 58 41.581 96.007 40.379 1.00 0.00 N ATOM 382 CA CYS 58 40.950 94.786 40.767 1.00 0.00 C ATOM 383 CB CYS 58 39.422 94.908 40.903 1.00 0.00 C ATOM 384 SG CYS 58 38.922 96.036 42.238 1.00 0.00 S ATOM 385 C CYS 58 41.233 93.674 39.812 1.00 0.00 C ATOM 386 O CYS 58 40.297 93.126 39.229 1.00 0.00 O ATOM 387 N LYS 59 42.517 93.319 39.591 1.00 0.00 N ATOM 388 CA LYS 59 42.700 92.115 38.856 1.00 0.00 C ATOM 389 CB LYS 59 44.178 91.735 38.685 1.00 0.00 C ATOM 390 CG LYS 59 45.035 92.866 38.119 1.00 0.00 C ATOM 391 CD LYS 59 45.219 94.032 39.094 1.00 0.00 C ATOM 392 CE LYS 59 46.201 93.729 40.229 1.00 0.00 C ATOM 393 NZ LYS 59 46.332 94.905 41.121 1.00 0.00 N ATOM 394 C LYS 59 42.075 91.123 39.789 1.00 0.00 C ATOM 395 O LYS 59 42.233 91.221 41.005 1.00 0.00 O ATOM 396 N GLY 60 41.282 90.188 39.249 1.00 0.00 N ATOM 397 CA GLY 60 41.089 90.203 37.839 1.00 0.00 C ATOM 398 C GLY 60 39.631 90.098 37.579 1.00 0.00 C ATOM 399 O GLY 60 38.904 89.393 38.279 1.00 0.00 O ATOM 400 N ARG 61 39.171 90.827 36.550 1.00 0.00 N ATOM 401 CA ARG 61 37.794 90.778 36.181 1.00 0.00 C ATOM 402 CB ARG 61 37.248 92.104 35.624 1.00 0.00 C ATOM 403 CG ARG 61 37.068 93.188 36.689 1.00 0.00 C ATOM 404 CD ARG 61 35.863 92.940 37.599 1.00 0.00 C ATOM 405 NE ARG 61 35.721 94.119 38.501 1.00 0.00 N ATOM 406 CZ ARG 61 34.591 94.263 39.253 1.00 0.00 C ATOM 407 NH1 ARG 61 33.618 93.306 39.209 1.00 0.00 N ATOM 408 NH2 ARG 61 34.434 95.362 40.046 1.00 0.00 N ATOM 409 C ARG 61 37.658 89.745 35.117 1.00 0.00 C ATOM 410 O ARG 61 38.630 89.382 34.457 1.00 0.00 O ATOM 411 N CYS 62 36.431 89.217 34.963 1.00 0.00 N ATOM 412 CA CYS 62 36.169 88.245 33.949 1.00 0.00 C ATOM 413 CB CYS 62 35.446 87.016 34.530 1.00 0.00 C ATOM 414 SG CYS 62 35.166 85.683 33.333 1.00 0.00 S ATOM 415 C CYS 62 35.259 88.918 32.965 1.00 0.00 C ATOM 416 O CYS 62 34.046 88.966 33.165 1.00 0.00 O ATOM 417 N PHE 63 35.831 89.458 31.869 1.00 0.00 N ATOM 418 CA PHE 63 35.066 90.160 30.874 1.00 0.00 C ATOM 419 CB PHE 63 35.924 91.001 29.913 1.00 0.00 C ATOM 420 CG PHE 63 36.555 92.091 30.707 1.00 0.00 C ATOM 421 CD1 PHE 63 37.718 91.862 31.406 1.00 0.00 C ATOM 422 CD2 PHE 63 35.987 93.344 30.754 1.00 0.00 C ATOM 423 CE1 PHE 63 38.304 92.865 32.141 1.00 0.00 C ATOM 424 CE2 PHE 63 36.570 94.352 31.487 1.00 0.00 C ATOM 425 CZ PHE 63 37.730 94.114 32.183 1.00 0.00 C ATOM 426 C PHE 63 34.344 89.138 30.066 1.00 0.00 C ATOM 427 O PHE 63 34.816 88.016 29.908 1.00 0.00 O ATOM 428 N GLU 64 33.166 89.499 29.526 1.00 0.00 N ATOM 429 CA GLU 64 32.385 88.518 28.837 1.00 0.00 C ATOM 430 CB GLU 64 30.932 88.497 29.327 1.00 0.00 C ATOM 431 CG GLU 64 30.097 87.442 28.623 1.00 0.00 C ATOM 432 CD GLU 64 30.794 86.125 28.894 1.00 0.00 C ATOM 433 OE1 GLU 64 31.839 85.867 28.241 1.00 0.00 O ATOM 434 OE2 GLU 64 30.300 85.345 29.748 1.00 0.00 O ATOM 435 C GLU 64 32.354 88.789 27.365 1.00 0.00 C ATOM 436 O GLU 64 32.132 89.914 26.922 1.00 0.00 O ATOM 437 N LEU 65 32.600 87.727 26.572 1.00 0.00 N ATOM 438 CA LEU 65 32.512 87.762 25.143 1.00 0.00 C ATOM 439 CB LEU 65 33.359 86.644 24.491 1.00 0.00 C ATOM 440 CG LEU 65 33.420 86.628 22.949 1.00 0.00 C ATOM 441 CD1 LEU 65 32.137 86.078 22.310 1.00 0.00 C ATOM 442 CD2 LEU 65 33.816 88.008 22.404 1.00 0.00 C ATOM 443 C LEU 65 31.056 87.574 24.836 1.00 0.00 C ATOM 444 O LEU 65 30.309 87.042 25.656 1.00 0.00 O ATOM 445 N GLN 66 30.601 88.021 23.652 1.00 0.00 N ATOM 446 CA GLN 66 29.203 87.942 23.335 1.00 0.00 C ATOM 447 CB GLN 66 28.838 88.555 21.971 1.00 0.00 C ATOM 448 CG GLN 66 29.453 87.813 20.783 1.00 0.00 C ATOM 449 CD GLN 66 29.014 88.518 19.507 1.00 0.00 C ATOM 450 OE1 GLN 66 29.407 88.140 18.405 1.00 0.00 O ATOM 451 NE2 GLN 66 28.169 89.574 19.658 1.00 0.00 N ATOM 452 C GLN 66 28.760 86.513 23.313 1.00 0.00 C ATOM 453 O GLN 66 29.517 85.608 22.969 1.00 0.00 O ATOM 454 N GLU 67 27.479 86.304 23.682 1.00 0.00 N ATOM 455 CA GLU 67 26.816 85.033 23.745 1.00 0.00 C ATOM 456 CB GLU 67 26.748 84.339 22.378 1.00 0.00 C ATOM 457 CG GLU 67 25.574 83.370 22.277 1.00 0.00 C ATOM 458 CD GLU 67 25.259 83.170 20.804 1.00 0.00 C ATOM 459 OE1 GLU 67 25.978 83.767 19.959 1.00 0.00 O ATOM 460 OE2 GLU 67 24.294 82.416 20.502 1.00 0.00 O ATOM 461 C GLU 67 27.497 84.187 24.767 1.00 0.00 C ATOM 462 O GLU 67 27.521 82.957 24.685 1.00 0.00 O ATOM 463 N VAL 68 28.054 84.861 25.791 1.00 0.00 N ATOM 464 CA VAL 68 28.662 84.152 26.868 1.00 0.00 C ATOM 465 CB VAL 68 30.154 84.191 26.783 1.00 0.00 C ATOM 466 CG1 VAL 68 30.725 83.349 27.920 1.00 0.00 C ATOM 467 CG2 VAL 68 30.577 83.710 25.384 1.00 0.00 C ATOM 468 C VAL 68 28.121 84.828 28.105 1.00 0.00 C ATOM 469 O VAL 68 27.819 86.020 28.070 1.00 0.00 O ATOM 470 N GLY 69 27.972 84.094 29.234 1.00 0.00 N ATOM 471 CA GLY 69 27.194 84.623 30.332 1.00 0.00 C ATOM 472 C GLY 69 27.932 84.959 31.596 1.00 0.00 C ATOM 473 O GLY 69 28.770 85.851 31.689 1.00 0.00 O ATOM 474 N PRO 70 27.541 84.204 32.589 1.00 0.00 N ATOM 475 CA PRO 70 27.899 84.392 33.975 1.00 0.00 C ATOM 476 CD PRO 70 27.117 82.839 32.323 1.00 0.00 C ATOM 477 CB PRO 70 27.325 83.180 34.706 1.00 0.00 C ATOM 478 CG PRO 70 27.351 82.077 33.636 1.00 0.00 C ATOM 479 C PRO 70 29.370 84.483 34.178 1.00 0.00 C ATOM 480 O PRO 70 30.117 84.337 33.216 1.00 0.00 O ATOM 481 N PRO 71 29.788 84.740 35.388 1.00 0.00 N ATOM 482 CA PRO 71 31.183 84.868 35.683 1.00 0.00 C ATOM 483 CD PRO 71 28.943 85.343 36.403 1.00 0.00 C ATOM 484 CB PRO 71 31.254 85.186 37.173 1.00 0.00 C ATOM 485 CG PRO 71 29.922 85.918 37.444 1.00 0.00 C ATOM 486 C PRO 71 31.822 83.596 35.255 1.00 0.00 C ATOM 487 O PRO 71 31.137 82.582 35.234 1.00 0.00 O ATOM 488 N ASP 72 33.117 83.625 34.891 1.00 0.00 N ATOM 489 CA ASP 72 33.809 82.500 34.316 1.00 0.00 C ATOM 490 CB ASP 72 33.453 81.171 35.032 1.00 0.00 C ATOM 491 CG ASP 72 34.413 80.039 34.699 1.00 0.00 C ATOM 492 OD1 ASP 72 34.629 79.742 33.495 1.00 0.00 O ATOM 493 OD2 ASP 72 34.953 79.446 35.671 1.00 0.00 O ATOM 494 C ASP 72 33.376 82.442 32.877 1.00 0.00 C ATOM 495 O ASP 72 33.922 81.700 32.062 1.00 0.00 O ATOM 496 N CYS 73 32.421 83.321 32.520 1.00 0.00 N ATOM 497 CA CYS 73 31.937 83.526 31.190 1.00 0.00 C ATOM 498 CB CYS 73 32.846 84.432 30.347 1.00 0.00 C ATOM 499 SG CYS 73 32.992 86.108 31.035 1.00 0.00 S ATOM 500 C CYS 73 31.725 82.244 30.445 1.00 0.00 C ATOM 501 O CYS 73 32.469 81.953 29.510 1.00 0.00 O ATOM 502 N ARG 74 30.714 81.436 30.826 1.00 0.00 N ATOM 503 CA ARG 74 30.408 80.271 30.034 1.00 0.00 C ATOM 504 CB ARG 74 30.673 78.942 30.763 1.00 0.00 C ATOM 505 CG ARG 74 32.155 78.689 31.046 1.00 0.00 C ATOM 506 CD ARG 74 32.423 77.367 31.769 1.00 0.00 C ATOM 507 NE ARG 74 33.894 77.257 31.972 1.00 0.00 N ATOM 508 CZ ARG 74 34.413 76.192 32.649 1.00 0.00 C ATOM 509 NH1 ARG 74 33.583 75.222 33.134 1.00 0.00 N ATOM 510 NH2 ARG 74 35.760 76.099 32.847 1.00 0.00 N ATOM 511 C ARG 74 28.929 80.325 29.720 1.00 0.00 C ATOM 512 O ARG 74 28.142 80.615 30.619 1.00 0.00 O ATOM 513 N CYS 75 28.489 80.055 28.456 1.00 0.00 N ATOM 514 CA CYS 75 27.072 80.179 28.193 1.00 0.00 C ATOM 515 CB CYS 75 26.726 81.387 27.309 1.00 0.00 C ATOM 516 SG CYS 75 24.941 81.527 26.991 1.00 0.00 S ATOM 517 C CYS 75 26.511 78.966 27.503 1.00 0.00 C ATOM 518 O CYS 75 26.757 78.739 26.319 1.00 0.00 O ATOM 519 N ASP 76 25.710 78.172 28.247 1.00 0.00 N ATOM 520 CA ASP 76 25.021 77.008 27.757 1.00 0.00 C ATOM 521 CB ASP 76 24.761 75.982 28.878 1.00 0.00 C ATOM 522 CG ASP 76 24.153 74.697 28.327 1.00 0.00 C ATOM 523 OD1 ASP 76 24.275 74.443 27.100 1.00 0.00 O ATOM 524 OD2 ASP 76 23.562 73.941 29.142 1.00 0.00 O ATOM 525 C ASP 76 23.690 77.462 27.242 1.00 0.00 C ATOM 526 O ASP 76 23.217 78.543 27.587 1.00 0.00 O ATOM 527 N ASN 77 23.044 76.641 26.392 1.00 0.00 N ATOM 528 CA ASN 77 21.740 76.993 25.912 1.00 0.00 C ATOM 529 CB ASN 77 21.284 76.139 24.714 1.00 0.00 C ATOM 530 CG ASN 77 20.079 76.800 24.056 1.00 0.00 C ATOM 531 OD1 ASN 77 19.125 77.211 24.714 1.00 0.00 O ATOM 532 ND2 ASN 77 20.125 76.910 22.701 1.00 0.00 N ATOM 533 C ASN 77 20.809 76.739 27.050 1.00 0.00 C ATOM 534 O ASN 77 20.995 75.790 27.811 1.00 0.00 O ATOM 535 N LEU 78 19.785 77.595 27.220 1.00 0.00 N ATOM 536 CA LEU 78 18.902 77.361 28.319 1.00 0.00 C ATOM 537 CB LEU 78 18.518 78.640 29.097 1.00 0.00 C ATOM 538 CG LEU 78 17.696 79.691 28.322 1.00 0.00 C ATOM 539 CD1 LEU 78 18.406 80.117 27.028 1.00 0.00 C ATOM 540 CD2 LEU 78 16.231 79.267 28.132 1.00 0.00 C ATOM 541 C LEU 78 17.674 76.699 27.794 1.00 0.00 C ATOM 542 O LEU 78 17.130 77.079 26.758 1.00 0.00 O ATOM 543 N CYS 79 17.246 75.628 28.485 1.00 0.00 N ATOM 544 CA CYS 79 18.007 75.171 29.607 1.00 0.00 C ATOM 545 CB CYS 79 17.188 75.054 30.902 1.00 0.00 C ATOM 546 SG CYS 79 16.570 76.664 31.482 1.00 0.00 S ATOM 547 C CYS 79 18.482 73.799 29.262 1.00 0.00 C ATOM 548 O CYS 79 17.682 72.917 28.956 1.00 0.00 O ATOM 549 N LYS 80 19.810 73.583 29.289 1.00 0.00 N ATOM 550 CA LYS 80 20.295 72.272 28.981 1.00 0.00 C ATOM 551 CB LYS 80 21.498 72.285 28.037 1.00 0.00 C ATOM 552 CG LYS 80 21.086 72.391 26.570 1.00 0.00 C ATOM 553 CD LYS 80 20.346 73.674 26.190 1.00 0.00 C ATOM 554 CE LYS 80 18.826 73.561 26.322 1.00 0.00 C ATOM 555 NZ LYS 80 18.173 74.737 25.705 1.00 0.00 N ATOM 556 C LYS 80 20.680 71.615 30.266 1.00 0.00 C ATOM 557 O LYS 80 21.563 72.087 30.981 1.00 0.00 O ATOM 558 N SER 81 19.964 70.527 30.618 1.00 0.00 N ATOM 559 CA SER 81 20.230 69.843 31.851 1.00 0.00 C ATOM 560 CB SER 81 19.142 68.835 32.249 1.00 0.00 C ATOM 561 OG SER 81 17.914 69.511 32.486 1.00 0.00 O ATOM 562 C SER 81 21.521 69.095 31.804 1.00 0.00 C ATOM 563 O SER 81 22.494 69.481 32.448 1.00 0.00 O ATOM 564 N TYR 82 21.574 68.001 31.014 1.00 0.00 N ATOM 565 CA TYR 82 22.781 67.230 31.035 1.00 0.00 C ATOM 566 CB TYR 82 22.534 65.719 31.178 1.00 0.00 C ATOM 567 CG TYR 82 21.898 65.494 32.506 1.00 0.00 C ATOM 568 CD1 TYR 82 20.544 65.678 32.670 1.00 0.00 C ATOM 569 CD2 TYR 82 22.651 65.095 33.586 1.00 0.00 C ATOM 570 CE1 TYR 82 19.951 65.472 33.893 1.00 0.00 C ATOM 571 CE2 TYR 82 22.063 64.886 34.812 1.00 0.00 C ATOM 572 CZ TYR 82 20.710 65.074 34.966 1.00 0.00 C ATOM 573 OH TYR 82 20.105 64.861 36.222 1.00 0.00 O ATOM 574 C TYR 82 23.480 67.440 29.739 1.00 0.00 C ATOM 575 O TYR 82 23.355 66.638 28.816 1.00 0.00 O ATOM 576 N SER 83 24.262 68.528 29.655 1.00 0.00 N ATOM 577 CA SER 83 24.992 68.795 28.455 1.00 0.00 C ATOM 578 CB SER 83 24.127 69.321 27.303 1.00 0.00 C ATOM 579 OG SER 83 23.692 70.639 27.594 1.00 0.00 O ATOM 580 C SER 83 25.978 69.876 28.753 1.00 0.00 C ATOM 581 O SER 83 25.869 70.567 29.764 1.00 0.00 O ATOM 582 N SER 84 26.965 70.048 27.850 1.00 0.00 N ATOM 583 CA SER 84 27.982 71.046 28.013 1.00 0.00 C ATOM 584 CB SER 84 29.380 70.462 28.281 1.00 0.00 C ATOM 585 OG SER 84 29.815 69.703 27.162 1.00 0.00 O ATOM 586 C SER 84 28.058 71.815 26.732 1.00 0.00 C ATOM 587 O SER 84 27.346 71.511 25.776 1.00 0.00 O ATOM 588 N CYS 85 28.907 72.864 26.694 1.00 0.00 N ATOM 589 CA CYS 85 29.009 73.661 25.505 1.00 0.00 C ATOM 590 CB CYS 85 28.549 75.113 25.677 1.00 0.00 C ATOM 591 SG CYS 85 26.773 75.256 25.958 1.00 0.00 S ATOM 592 C CYS 85 30.436 73.797 25.109 1.00 0.00 C ATOM 593 O CYS 85 31.355 73.642 25.911 1.00 0.00 O ATOM 594 N CYS 86 30.632 74.096 23.813 1.00 0.00 N ATOM 595 CA CYS 86 31.917 74.380 23.259 1.00 0.00 C ATOM 596 CB CYS 86 32.314 73.401 22.142 1.00 0.00 C ATOM 597 SG CYS 86 31.090 73.335 20.802 1.00 0.00 S ATOM 598 C CYS 86 31.768 75.744 22.669 1.00 0.00 C ATOM 599 O CYS 86 32.646 76.597 22.794 1.00 0.00 O ATOM 600 N HIS 87 30.605 75.977 22.028 1.00 0.00 N ATOM 601 CA HIS 87 30.294 77.245 21.439 1.00 0.00 C ATOM 602 ND1 HIS 87 31.374 75.474 18.732 1.00 0.00 N ATOM 603 CG HIS 87 31.069 76.773 19.068 1.00 0.00 C ATOM 604 CB HIS 87 29.922 77.171 19.947 1.00 0.00 C ATOM 605 NE2 HIS 87 32.888 76.758 17.730 1.00 0.00 N ATOM 606 CD2 HIS 87 32.003 77.545 18.447 1.00 0.00 C ATOM 607 CE1 HIS 87 32.468 75.521 17.932 1.00 0.00 C ATOM 608 C HIS 87 29.103 77.784 22.168 1.00 0.00 C ATOM 609 O HIS 87 28.560 77.141 23.064 1.00 0.00 O ATOM 610 N ASP 88 28.690 79.011 21.803 1.00 0.00 N ATOM 611 CA ASP 88 27.587 79.682 22.427 1.00 0.00 C ATOM 612 CB ASP 88 27.459 81.131 21.939 1.00 0.00 C ATOM 613 CG ASP 88 27.319 81.098 20.421 1.00 0.00 C ATOM 614 OD1 ASP 88 26.213 80.757 19.922 1.00 0.00 O ATOM 615 OD2 ASP 88 28.327 81.419 19.736 1.00 0.00 O ATOM 616 C ASP 88 26.308 78.967 22.126 1.00 0.00 C ATOM 617 O ASP 88 26.096 78.475 21.020 1.00 0.00 O ATOM 618 N PHE 89 25.431 78.883 23.147 1.00 0.00 N ATOM 619 CA PHE 89 24.122 78.302 23.040 1.00 0.00 C ATOM 620 CB PHE 89 23.156 79.084 22.133 1.00 0.00 C ATOM 621 CG PHE 89 22.702 80.285 22.888 1.00 0.00 C ATOM 622 CD1 PHE 89 23.485 81.410 22.957 1.00 0.00 C ATOM 623 CD2 PHE 89 21.484 80.283 23.530 1.00 0.00 C ATOM 624 CE1 PHE 89 23.064 82.519 23.653 1.00 0.00 C ATOM 625 CE2 PHE 89 21.056 81.389 24.227 1.00 0.00 C ATOM 626 CZ PHE 89 21.848 82.509 24.292 1.00 0.00 C ATOM 627 C PHE 89 24.200 76.898 22.549 1.00 0.00 C ATOM 628 O PHE 89 23.275 76.424 21.892 1.00 0.00 O ATOM 629 N ASP 90 25.294 76.181 22.861 1.00 0.00 N ATOM 630 CA ASP 90 25.374 74.818 22.429 1.00 0.00 C ATOM 631 CB ASP 90 26.814 74.306 22.251 1.00 0.00 C ATOM 632 CG ASP 90 27.416 75.025 21.053 1.00 0.00 C ATOM 633 OD1 ASP 90 26.675 75.805 20.398 1.00 0.00 O ATOM 634 OD2 ASP 90 28.625 74.801 20.774 1.00 0.00 O ATOM 635 C ASP 90 24.720 73.972 23.468 1.00 0.00 C ATOM 636 O ASP 90 24.415 74.437 24.566 1.00 0.00 O ATOM 637 N GLU 91 24.440 72.703 23.118 1.00 0.00 N ATOM 638 CA GLU 91 23.889 71.794 24.074 1.00 0.00 C ATOM 639 CB GLU 91 22.353 71.738 24.002 1.00 0.00 C ATOM 640 CG GLU 91 21.780 71.482 22.604 1.00 0.00 C ATOM 641 CD GLU 91 21.946 72.755 21.787 1.00 0.00 C ATOM 642 OE1 GLU 91 21.720 73.856 22.356 1.00 0.00 O ATOM 643 OE2 GLU 91 22.304 72.643 20.584 1.00 0.00 O ATOM 644 C GLU 91 24.419 70.434 23.729 1.00 0.00 C ATOM 645 O GLU 91 23.708 69.617 23.146 1.00 0.00 O ATOM 646 N LEU 92 25.671 70.133 24.129 1.00 0.00 N ATOM 647 CA LEU 92 26.231 68.859 23.781 1.00 0.00 C ATOM 648 CB LEU 92 27.767 68.862 23.698 1.00 0.00 C ATOM 649 CG LEU 92 28.316 69.852 22.653 1.00 0.00 C ATOM 650 CD1 LEU 92 27.828 69.503 21.237 1.00 0.00 C ATOM 651 CD2 LEU 92 28.010 71.306 23.047 1.00 0.00 C ATOM 652 C LEU 92 25.834 67.915 24.865 1.00 0.00 C ATOM 653 O LEU 92 26.213 68.087 26.021 1.00 0.00 O ATOM 654 N CYS 93 25.062 66.875 24.499 1.00 0.00 N ATOM 655 CA CYS 93 24.513 65.990 25.481 1.00 0.00 C ATOM 656 CB CYS 93 23.267 65.224 25.006 1.00 0.00 C ATOM 657 SG CYS 93 21.952 66.321 24.410 1.00 0.00 S ATOM 658 C CYS 93 25.506 64.961 25.890 1.00 0.00 C ATOM 659 O CYS 93 26.557 64.789 25.272 1.00 0.00 O ATOM 660 N LEU 94 25.174 64.282 27.006 1.00 0.00 N ATOM 661 CA LEU 94 25.923 63.169 27.498 1.00 0.00 C ATOM 662 CB LEU 94 25.681 62.850 28.984 1.00 0.00 C ATOM 663 CG LEU 94 26.237 63.923 29.938 1.00 0.00 C ATOM 664 CD1 LEU 94 27.771 63.986 29.871 1.00 0.00 C ATOM 665 CD2 LEU 94 25.576 65.288 29.696 1.00 0.00 C ATOM 666 C LEU 94 25.459 62.002 26.690 1.00 0.00 C ATOM 667 O LEU 94 24.496 62.109 25.933 1.00 0.00 O ATOM 668 N LYS 95 26.149 60.861 26.825 1.00 0.00 N ATOM 669 CA LYS 95 25.851 59.722 26.011 1.00 0.00 C ATOM 670 CB LYS 95 26.751 58.527 26.360 1.00 0.00 C ATOM 671 CG LYS 95 26.478 57.283 25.519 1.00 0.00 C ATOM 672 CD LYS 95 27.550 56.212 25.692 1.00 0.00 C ATOM 673 CE LYS 95 27.520 55.535 27.066 1.00 0.00 C ATOM 674 NZ LYS 95 27.901 56.504 28.118 1.00 0.00 N ATOM 675 C LYS 95 24.441 59.273 26.211 1.00 0.00 C ATOM 676 O LYS 95 23.725 59.060 25.236 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 95.97 30.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 99.88 30.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 85.19 31.8 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.62 44.4 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 88.85 42.9 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 87.40 44.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 88.12 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.61 26.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 86.40 35.3 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 97.69 22.2 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 77.17 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 95.40 22.2 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 91.70 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 93.70 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 101.16 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 41.17 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 41.17 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 46.02 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 1.24 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.14 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.14 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2786 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 11.67 29 100.0 29 CRMSCA BURIED . . . . . . . . 9.60 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.21 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 11.73 142 100.0 142 CRMSMC BURIED . . . . . . . . 9.71 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.18 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 13.30 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 13.95 103 100.0 103 CRMSSC BURIED . . . . . . . . 10.93 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.10 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 12.75 219 100.0 219 CRMSALL BURIED . . . . . . . . 10.21 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.256 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 10.900 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 8.560 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.319 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 10.981 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 8.609 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.148 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 12.314 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 12.908 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 10.190 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.117 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 11.838 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 9.238 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 5 20 40 40 DISTCA CA (P) 0.00 0.00 0.00 12.50 50.00 40 DISTCA CA (RMS) 0.00 0.00 0.00 4.00 7.10 DISTCA ALL (N) 0 1 7 29 123 303 303 DISTALL ALL (P) 0.00 0.33 2.31 9.57 40.59 303 DISTALL ALL (RMS) 0.00 1.69 2.42 3.86 6.77 DISTALL END of the results output