####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS166_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS166_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.11 2.11 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 29 67 - 95 1.94 2.13 LCS_AVERAGE: 58.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 72 - 94 0.88 2.28 LONGEST_CONTINUOUS_SEGMENT: 23 73 - 95 1.00 2.17 LCS_AVERAGE: 37.94 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 0 9 40 0 10 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 4 9 40 9 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 4 9 40 2 15 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 4 9 40 0 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 4 9 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 3 9 40 3 4 5 9 10 31 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 3 9 40 3 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 9 40 3 4 10 17 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 9 40 3 15 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 8 40 4 4 5 6 30 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 8 40 4 4 5 6 16 27 34 37 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 29 40 4 4 23 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 29 40 4 4 5 6 7 30 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 3 29 40 0 3 10 28 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 3 29 40 2 3 4 5 6 7 20 31 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 3 29 40 2 3 11 27 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 23 29 40 4 7 22 29 31 33 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 23 29 40 10 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 23 29 40 6 17 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 23 29 40 10 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 23 29 40 10 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 23 29 40 10 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 23 29 40 10 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 23 29 40 4 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 23 29 40 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 23 29 40 3 15 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 23 29 40 3 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 23 29 40 3 3 5 9 18 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 65.52 ( 37.94 58.62 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 24 28 29 32 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 32.50 60.00 70.00 72.50 80.00 85.00 90.00 95.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.37 0.66 0.81 0.85 1.22 1.43 1.61 1.81 1.93 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 GDT RMS_ALL_AT 2.19 2.21 2.21 2.21 2.15 2.13 2.13 2.11 2.12 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 # Checking swapping # possible swapping detected: E 67 E 67 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.561 0 0.276 0.276 3.938 61.905 61.905 LGA S 57 S 57 1.609 0 0.088 0.592 2.246 70.833 68.810 LGA C 58 C 58 1.766 0 0.682 0.643 3.467 67.143 69.048 LGA K 59 K 59 1.082 0 0.286 0.444 2.235 79.524 77.725 LGA G 60 G 60 0.202 0 0.727 0.727 3.246 80.476 80.476 LGA R 61 R 61 3.780 0 0.627 1.224 15.582 53.690 21.732 LGA C 62 C 62 0.844 0 0.395 0.989 2.183 86.190 81.825 LGA F 63 F 63 2.783 0 0.215 0.341 7.057 67.143 37.879 LGA E 64 E 64 1.005 0 0.607 0.905 2.217 79.524 79.788 LGA L 65 L 65 3.222 0 0.619 0.571 4.758 47.381 43.869 LGA Q 66 Q 66 4.634 0 0.069 0.717 12.596 49.524 24.021 LGA E 67 E 67 2.606 0 0.195 1.073 11.223 71.548 35.556 LGA V 68 V 68 3.933 0 0.536 1.350 7.819 45.000 32.245 LGA G 69 G 69 2.879 0 0.469 0.469 4.481 46.905 46.905 LGA P 70 P 70 5.749 0 0.128 0.234 8.164 33.333 22.857 LGA P 71 P 71 3.300 0 0.599 0.626 5.002 56.190 44.830 LGA D 72 D 72 3.538 3 0.339 0.399 6.381 54.167 29.226 LGA C 73 C 73 1.326 0 0.114 0.718 2.461 75.119 74.444 LGA R 74 R 74 0.632 0 0.027 1.481 4.963 90.476 68.615 LGA C 75 C 75 0.231 0 0.098 0.128 1.330 95.238 92.143 LGA D 76 D 76 0.861 0 0.033 0.381 1.954 85.952 81.548 LGA N 77 N 77 1.760 0 0.081 1.216 5.116 75.000 58.214 LGA L 78 L 78 1.042 0 0.098 1.288 3.296 81.429 76.548 LGA C 79 C 79 0.753 0 0.024 0.620 1.874 92.857 87.619 LGA K 80 K 80 0.772 0 0.054 1.216 3.528 90.476 80.265 LGA S 81 S 81 0.610 0 0.041 0.697 2.628 95.238 88.095 LGA Y 82 Y 82 0.287 0 0.149 0.176 2.456 97.619 83.452 LGA S 83 S 83 0.469 0 0.226 0.216 1.239 97.619 93.730 LGA S 84 S 84 0.510 0 0.150 0.644 1.518 88.214 86.032 LGA C 85 C 85 0.983 0 0.095 0.176 1.327 85.952 85.952 LGA C 86 C 86 1.014 0 0.055 0.118 1.454 88.333 86.032 LGA H 87 H 87 1.066 0 0.050 1.235 7.727 88.214 52.000 LGA D 88 D 88 0.461 0 0.240 0.583 2.543 97.619 85.417 LGA F 89 F 89 0.441 0 0.121 0.155 0.942 100.000 93.939 LGA D 90 D 90 0.697 0 0.037 1.338 4.765 95.238 77.143 LGA E 91 E 91 0.358 0 0.163 0.947 3.415 95.238 79.577 LGA L 92 L 92 0.391 0 0.262 1.369 5.193 95.357 76.369 LGA C 93 C 93 1.261 0 0.495 0.516 2.424 88.333 80.476 LGA L 94 L 94 1.089 0 0.414 1.372 6.939 73.214 54.762 LGA K 95 K 95 3.262 0 0.551 0.732 11.087 55.714 35.291 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.105 1.993 3.740 76.973 65.909 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 1.81 81.875 79.141 1.990 LGA_LOCAL RMSD: 1.809 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.115 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.105 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.136695 * X + 0.768164 * Y + 0.625491 * Z + 29.995544 Y_new = 0.114631 * X + 0.614911 * Y + -0.780221 * Z + 87.855553 Z_new = -0.983958 * X + 0.178353 * Y + -0.004000 * Z + 56.004475 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.697832 1.391438 1.593221 [DEG: 39.9829 79.7235 91.2848 ] ZXZ: 0.675767 1.574797 -1.391483 [DEG: 38.7186 90.2292 -79.7261 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS166_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS166_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 1.81 79.141 2.11 REMARK ---------------------------------------------------------- MOLECULE T0543TS166_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gsoA ATOM 422 N GLY 56 31.895 72.024 19.165 1.00 0.00 N ATOM 423 CA GLY 56 33.312 71.863 19.020 1.00 0.00 C ATOM 424 C GLY 56 33.789 72.903 18.016 1.00 0.00 C ATOM 425 O GLY 56 34.151 72.503 16.880 1.00 0.00 O ATOM 426 N SER 57 34.159 74.089 18.726 1.00 0.00 N ATOM 427 CA SER 57 32.845 74.657 18.815 1.00 0.00 C ATOM 428 C SER 57 31.965 74.084 17.749 1.00 0.00 C ATOM 429 O SER 57 32.427 73.649 16.695 1.00 0.00 O ATOM 430 CB SER 57 32.828 76.188 18.657 1.00 0.00 C ATOM 431 OG SER 57 33.297 76.556 17.368 1.00 0.00 O ATOM 432 N CYS 58 30.648 74.065 18.034 1.00 0.00 N ATOM 433 CA CYS 58 29.654 73.540 17.140 1.00 0.00 C ATOM 434 C CYS 58 29.391 74.548 16.085 1.00 0.00 C ATOM 435 O CYS 58 29.629 75.743 16.239 1.00 0.00 O ATOM 436 CB CYS 58 28.261 73.312 17.779 1.00 0.00 C ATOM 437 SG CYS 58 28.189 72.120 19.153 1.00 0.00 S ATOM 438 N LYS 59 28.866 74.050 14.962 1.00 0.00 N ATOM 439 CA LYS 59 28.544 74.872 13.847 1.00 0.00 C ATOM 440 C LYS 59 27.671 73.997 13.023 1.00 0.00 C ATOM 441 O LYS 59 27.072 73.048 13.522 1.00 0.00 O ATOM 442 CB LYS 59 29.791 75.228 13.018 1.00 0.00 C ATOM 443 CG LYS 59 29.615 76.363 12.008 1.00 0.00 C ATOM 444 CD LYS 59 30.965 76.893 11.515 1.00 0.00 C ATOM 445 CE LYS 59 30.875 78.078 10.555 1.00 0.00 C ATOM 446 NZ LYS 59 32.237 78.494 10.149 1.00 0.00 N ATOM 447 N GLY 60 27.509 74.323 11.737 1.00 0.00 N ATOM 448 CA GLY 60 26.737 73.444 10.920 1.00 0.00 C ATOM 449 C GLY 60 25.345 73.476 11.434 1.00 0.00 C ATOM 450 O GLY 60 25.022 74.187 12.384 1.00 0.00 O ATOM 451 N ARG 61 24.468 72.663 10.842 1.00 0.00 N ATOM 452 CA ARG 61 23.145 72.685 11.360 1.00 0.00 C ATOM 453 C ARG 61 23.289 72.116 12.721 1.00 0.00 C ATOM 454 O ARG 61 23.853 71.039 12.874 1.00 0.00 O ATOM 455 CB ARG 61 22.202 71.779 10.567 1.00 0.00 C ATOM 456 CG ARG 61 22.140 72.173 9.095 1.00 0.00 C ATOM 457 CD ARG 61 21.402 71.154 8.234 1.00 0.00 C ATOM 458 NE ARG 61 19.973 71.184 8.648 1.00 0.00 N ATOM 459 CZ ARG 61 19.038 70.506 7.921 1.00 0.00 C ATOM 460 NH1 ARG 61 19.411 69.791 6.819 1.00 0.00 H ATOM 461 NH2 ARG 61 17.727 70.551 8.294 1.00 0.00 H ATOM 462 N CYS 62 22.816 72.836 13.755 1.00 0.00 N ATOM 463 CA CYS 62 22.962 72.330 15.085 1.00 0.00 C ATOM 464 C CYS 62 21.787 71.435 15.330 1.00 0.00 C ATOM 465 O CYS 62 21.174 71.444 16.394 1.00 0.00 O ATOM 466 CB CYS 62 22.976 73.428 16.162 1.00 0.00 C ATOM 467 SG CYS 62 21.373 74.245 16.380 1.00 0.00 S ATOM 468 N PHE 63 21.394 70.725 14.262 1.00 0.00 N ATOM 469 CA PHE 63 20.365 69.735 14.139 1.00 0.00 C ATOM 470 C PHE 63 20.811 68.334 14.453 1.00 0.00 C ATOM 471 O PHE 63 19.967 67.475 14.702 1.00 0.00 O ATOM 472 CB PHE 63 19.750 69.718 12.732 1.00 0.00 C ATOM 473 CG PHE 63 19.018 71.005 12.575 1.00 0.00 C ATOM 474 CD1 PHE 63 17.721 71.127 13.015 1.00 0.00 C ATOM 475 CD2 PHE 63 19.630 72.092 11.995 1.00 0.00 C ATOM 476 CE1 PHE 63 17.043 72.313 12.875 1.00 0.00 C ATOM 477 CE2 PHE 63 18.956 73.283 11.852 1.00 0.00 C ATOM 478 CZ PHE 63 17.658 73.394 12.292 1.00 0.00 C ATOM 479 N GLU 64 22.131 68.053 14.390 1.00 0.00 N ATOM 480 CA GLU 64 22.658 66.706 14.366 1.00 0.00 C ATOM 481 C GLU 64 22.229 65.831 15.509 1.00 0.00 C ATOM 482 O GLU 64 21.806 64.706 15.246 1.00 0.00 O ATOM 483 CB GLU 64 24.195 66.655 14.369 1.00 0.00 C ATOM 484 CG GLU 64 24.807 67.265 15.631 1.00 0.00 C ATOM 485 CD GLU 64 26.176 66.641 15.848 1.00 0.00 C ATOM 486 OE1 GLU 64 26.268 65.385 15.801 1.00 0.00 O ATOM 487 OE2 GLU 64 27.147 67.409 16.076 1.00 0.00 O ATOM 488 N LEU 65 22.352 66.293 16.778 1.00 0.00 N ATOM 489 CA LEU 65 22.004 65.563 17.976 1.00 0.00 C ATOM 490 C LEU 65 23.274 65.216 18.680 1.00 0.00 C ATOM 491 O LEU 65 24.321 65.812 18.428 1.00 0.00 O ATOM 492 CB LEU 65 21.156 64.277 17.840 1.00 0.00 C ATOM 493 CG LEU 65 19.730 64.536 17.319 1.00 0.00 C ATOM 494 CD1 LEU 65 18.904 63.240 17.267 1.00 0.00 C ATOM 495 CD2 LEU 65 19.040 65.649 18.123 1.00 0.00 C ATOM 496 N GLN 66 23.204 64.253 19.620 1.00 0.00 N ATOM 497 CA GLN 66 24.381 63.877 20.344 1.00 0.00 C ATOM 498 C GLN 66 25.331 63.231 19.388 1.00 0.00 C ATOM 499 O GLN 66 24.990 62.280 18.683 1.00 0.00 O ATOM 500 CB GLN 66 24.113 62.888 21.491 1.00 0.00 C ATOM 501 CG GLN 66 23.272 63.484 22.618 1.00 0.00 C ATOM 502 CD GLN 66 23.084 62.412 23.681 1.00 0.00 C ATOM 503 OE1 GLN 66 21.975 62.193 24.166 1.00 0.00 O ATOM 504 NE2 GLN 66 24.198 61.732 24.063 1.00 0.00 N ATOM 505 N GLU 67 26.569 63.754 19.345 1.00 0.00 N ATOM 506 CA GLU 67 27.572 63.205 18.483 1.00 0.00 C ATOM 507 C GLU 67 28.062 61.955 19.131 1.00 0.00 C ATOM 508 O GLU 67 27.990 61.806 20.348 1.00 0.00 O ATOM 509 CB GLU 67 28.760 64.155 18.248 1.00 0.00 C ATOM 510 CG GLU 67 29.811 63.609 17.280 1.00 0.00 C ATOM 511 CD GLU 67 30.892 64.669 17.121 1.00 0.00 C ATOM 512 OE1 GLU 67 30.525 65.862 16.955 1.00 0.00 O ATOM 513 OE2 GLU 67 32.096 64.300 17.166 1.00 0.00 O ATOM 514 N VAL 68 28.583 61.017 18.320 1.00 0.00 N ATOM 515 CA VAL 68 28.975 59.751 18.861 1.00 0.00 C ATOM 516 C VAL 68 29.988 59.953 19.941 1.00 0.00 C ATOM 517 O VAL 68 29.817 59.440 21.046 1.00 0.00 O ATOM 518 CB VAL 68 29.548 58.831 17.818 1.00 0.00 C ATOM 519 CG1 VAL 68 30.764 59.501 17.156 1.00 0.00 C ATOM 520 CG2 VAL 68 29.869 57.485 18.487 1.00 0.00 C ATOM 521 N GLY 69 31.066 60.717 19.683 1.00 0.00 N ATOM 522 CA GLY 69 31.984 60.911 20.766 1.00 0.00 C ATOM 523 C GLY 69 32.816 62.128 20.511 1.00 0.00 C ATOM 524 O GLY 69 33.978 62.026 20.123 1.00 0.00 O ATOM 525 N PRO 70 32.250 63.291 20.706 1.00 0.00 N ATOM 526 CA PRO 70 33.035 64.489 20.604 1.00 0.00 C ATOM 527 C PRO 70 33.554 64.758 21.974 1.00 0.00 C ATOM 528 O PRO 70 32.992 64.203 22.920 1.00 0.00 O ATOM 529 CB PRO 70 32.099 65.585 20.099 1.00 0.00 C ATOM 530 CG PRO 70 30.692 65.053 20.414 1.00 0.00 C ATOM 531 CD PRO 70 30.864 63.530 20.342 1.00 0.00 C ATOM 532 N PRO 71 34.553 65.574 22.141 1.00 0.00 N ATOM 533 CA PRO 71 34.992 65.830 23.476 1.00 0.00 C ATOM 534 C PRO 71 33.905 66.554 24.147 1.00 0.00 C ATOM 535 O PRO 71 33.320 67.401 23.473 1.00 0.00 O ATOM 536 CB PRO 71 36.314 66.576 23.348 1.00 0.00 C ATOM 537 CG PRO 71 36.883 66.039 22.019 1.00 0.00 C ATOM 538 CD PRO 71 35.641 65.674 21.183 1.00 0.00 C ATOM 539 N ASP 72 33.693 66.243 25.450 1.00 0.00 N ATOM 540 CA ASP 72 32.622 66.691 26.298 1.00 0.00 C ATOM 541 C ASP 72 32.171 68.033 25.863 1.00 0.00 C ATOM 542 O ASP 72 32.596 69.072 26.364 1.00 0.00 O ATOM 543 CB ASP 72 32.997 66.708 27.795 1.00 0.00 C ATOM 544 CG ASP 72 34.214 67.598 28.008 1.00 0.00 C ATOM 545 OD1 ASP 72 34.824 68.032 26.996 1.00 0.00 O ATOM 546 OD2 ASP 72 34.561 67.848 29.194 1.00 0.00 O ATOM 547 N CYS 73 31.261 68.023 24.879 1.00 0.00 N ATOM 548 CA CYS 73 30.843 69.259 24.318 1.00 0.00 C ATOM 549 C CYS 73 29.853 68.840 23.281 1.00 0.00 C ATOM 550 O CYS 73 30.235 68.272 22.258 1.00 0.00 O ATOM 551 CB CYS 73 32.026 69.966 23.630 1.00 0.00 C ATOM 552 SG CYS 73 31.901 71.772 23.613 1.00 0.00 S ATOM 553 N ARG 74 28.555 69.109 23.519 1.00 0.00 N ATOM 554 CA ARG 74 27.558 68.601 22.623 1.00 0.00 C ATOM 555 C ARG 74 26.681 69.723 22.161 1.00 0.00 C ATOM 556 O ARG 74 26.524 70.751 22.816 1.00 0.00 O ATOM 557 CB ARG 74 26.632 67.573 23.293 1.00 0.00 C ATOM 558 CG ARG 74 25.890 66.655 22.320 1.00 0.00 C ATOM 559 CD ARG 74 26.764 65.505 21.815 1.00 0.00 C ATOM 560 NE ARG 74 26.989 64.587 22.970 1.00 0.00 N ATOM 561 CZ ARG 74 28.035 64.798 23.823 1.00 0.00 C ATOM 562 NH1 ARG 74 28.896 65.835 23.604 1.00 0.00 H ATOM 563 NH2 ARG 74 28.218 63.978 24.902 1.00 0.00 H ATOM 564 N CYS 75 26.212 69.563 20.916 1.00 0.00 N ATOM 565 CA CYS 75 25.319 70.394 20.153 1.00 0.00 C ATOM 566 C CYS 75 23.839 70.058 20.321 1.00 0.00 C ATOM 567 O CYS 75 23.010 70.677 19.650 1.00 0.00 O ATOM 568 CB CYS 75 25.660 70.363 18.650 1.00 0.00 C ATOM 569 SG CYS 75 27.458 70.414 18.317 1.00 0.00 S ATOM 570 N ASP 76 23.464 69.005 21.094 1.00 0.00 N ATOM 571 CA ASP 76 22.085 68.548 21.128 1.00 0.00 C ATOM 572 C ASP 76 21.189 69.444 21.948 1.00 0.00 C ATOM 573 O ASP 76 21.627 70.422 22.545 1.00 0.00 O ATOM 574 CB ASP 76 21.925 67.115 21.674 1.00 0.00 C ATOM 575 CG ASP 76 22.389 67.100 23.125 1.00 0.00 C ATOM 576 OD1 ASP 76 23.526 67.569 23.396 1.00 0.00 O ATOM 577 OD2 ASP 76 21.601 66.630 23.989 1.00 0.00 O ATOM 578 N ASN 77 19.867 69.141 21.932 1.00 0.00 N ATOM 579 CA ASN 77 18.847 69.894 22.625 1.00 0.00 C ATOM 580 C ASN 77 18.969 69.739 24.119 1.00 0.00 C ATOM 581 O ASN 77 18.814 70.709 24.858 1.00 0.00 O ATOM 582 CB ASN 77 17.423 69.472 22.229 1.00 0.00 C ATOM 583 CG ASN 77 16.437 70.432 22.882 1.00 0.00 C ATOM 584 OD1 ASN 77 16.333 70.512 24.106 1.00 0.00 O ATOM 585 ND2 ASN 77 15.692 71.198 22.041 1.00 0.00 N ATOM 586 N LEU 78 19.230 68.501 24.580 1.00 0.00 N ATOM 587 CA LEU 78 19.349 68.057 25.946 1.00 0.00 C ATOM 588 C LEU 78 20.622 68.536 26.573 1.00 0.00 C ATOM 589 O LEU 78 20.811 68.439 27.785 1.00 0.00 O ATOM 590 CB LEU 78 19.272 66.530 26.088 1.00 0.00 C ATOM 591 CG LEU 78 17.893 65.971 25.690 1.00 0.00 C ATOM 592 CD1 LEU 78 17.805 64.458 25.939 1.00 0.00 C ATOM 593 CD2 LEU 78 16.759 66.757 26.371 1.00 0.00 C ATOM 594 N CYS 79 21.534 69.064 25.752 1.00 0.00 N ATOM 595 CA CYS 79 22.883 69.409 26.086 1.00 0.00 C ATOM 596 C CYS 79 22.959 70.234 27.346 1.00 0.00 C ATOM 597 O CYS 79 23.884 70.043 28.137 1.00 0.00 O ATOM 598 CB CYS 79 23.465 70.190 24.905 1.00 0.00 C ATOM 599 SG CYS 79 25.063 70.937 25.224 1.00 0.00 S ATOM 600 N LYS 80 22.033 71.184 27.574 1.00 0.00 N ATOM 601 CA LYS 80 22.057 71.987 28.770 1.00 0.00 C ATOM 602 C LYS 80 21.770 71.145 29.986 1.00 0.00 C ATOM 603 O LYS 80 22.274 71.425 31.075 1.00 0.00 O ATOM 604 CB LYS 80 21.047 73.147 28.736 1.00 0.00 C ATOM 605 CG LYS 80 21.406 74.223 27.706 1.00 0.00 C ATOM 606 CD LYS 80 20.288 75.233 27.447 1.00 0.00 C ATOM 607 CE LYS 80 20.652 76.309 26.421 1.00 0.00 C ATOM 608 NZ LYS 80 20.674 75.721 25.063 1.00 0.00 N ATOM 609 N SER 81 20.915 70.112 29.854 1.00 0.00 N ATOM 610 CA SER 81 20.592 69.279 30.980 1.00 0.00 C ATOM 611 C SER 81 21.846 68.605 31.450 1.00 0.00 C ATOM 612 O SER 81 22.128 68.553 32.646 1.00 0.00 O ATOM 613 CB SER 81 19.573 68.178 30.633 1.00 0.00 C ATOM 614 OG SER 81 19.295 67.389 31.780 1.00 0.00 O ATOM 615 N TYR 82 22.627 68.077 30.491 1.00 0.00 N ATOM 616 CA TYR 82 23.880 67.405 30.704 1.00 0.00 C ATOM 617 C TYR 82 24.866 68.408 31.218 1.00 0.00 C ATOM 618 O TYR 82 25.740 68.078 32.017 1.00 0.00 O ATOM 619 CB TYR 82 24.494 66.860 29.403 1.00 0.00 C ATOM 620 CG TYR 82 23.610 65.814 28.822 1.00 0.00 C ATOM 621 CD1 TYR 82 22.497 66.159 28.091 1.00 0.00 C ATOM 622 CD2 TYR 82 23.905 64.481 28.994 1.00 0.00 C ATOM 623 CE1 TYR 82 21.688 65.189 27.547 1.00 0.00 C ATOM 624 CE2 TYR 82 23.101 63.508 28.453 1.00 0.00 C ATOM 625 CZ TYR 82 21.988 63.860 27.730 1.00 0.00 C ATOM 626 OH TYR 82 21.163 62.859 27.176 1.00 0.00 H ATOM 627 N SER 83 24.746 69.671 30.769 1.00 0.00 N ATOM 628 CA SER 83 25.697 70.701 31.085 1.00 0.00 C ATOM 629 C SER 83 26.963 70.444 30.318 1.00 0.00 C ATOM 630 O SER 83 28.038 70.881 30.727 1.00 0.00 O ATOM 631 CB SER 83 26.058 70.750 32.579 1.00 0.00 C ATOM 632 OG SER 83 24.905 71.054 33.351 1.00 0.00 O ATOM 633 N SER 84 26.843 69.693 29.198 1.00 0.00 N ATOM 634 CA SER 84 27.894 69.345 28.268 1.00 0.00 C ATOM 635 C SER 84 28.180 70.431 27.259 1.00 0.00 C ATOM 636 O SER 84 29.228 70.416 26.619 1.00 0.00 O ATOM 637 CB SER 84 27.536 68.127 27.401 1.00 0.00 C ATOM 638 OG SER 84 27.350 66.975 28.201 1.00 0.00 O ATOM 639 N CYS 85 27.271 71.406 27.095 1.00 0.00 N ATOM 640 CA CYS 85 27.274 72.351 25.999 1.00 0.00 C ATOM 641 C CYS 85 28.550 73.101 25.795 1.00 0.00 C ATOM 642 O CYS 85 29.262 73.463 26.731 1.00 0.00 O ATOM 643 CB CYS 85 26.197 73.440 26.151 1.00 0.00 C ATOM 644 SG CYS 85 24.566 72.684 26.102 1.00 0.00 S ATOM 645 N CYS 86 28.850 73.321 24.494 1.00 0.00 N ATOM 646 CA CYS 86 29.899 74.170 24.009 1.00 0.00 C ATOM 647 C CYS 86 29.332 75.558 24.116 1.00 0.00 C ATOM 648 O CYS 86 28.143 75.774 23.890 1.00 0.00 O ATOM 649 CB CYS 86 30.192 73.931 22.519 1.00 0.00 C ATOM 650 SG CYS 86 30.527 72.180 22.191 1.00 0.00 S ATOM 651 N HIS 87 30.195 76.546 24.397 1.00 0.00 N ATOM 652 CA HIS 87 29.808 77.902 24.680 1.00 0.00 C ATOM 653 C HIS 87 29.073 78.510 23.519 1.00 0.00 C ATOM 654 O HIS 87 28.128 79.274 23.707 1.00 0.00 O ATOM 655 CB HIS 87 31.048 78.768 24.966 1.00 0.00 C ATOM 656 CG HIS 87 30.761 80.084 25.619 1.00 0.00 C ATOM 657 ND1 HIS 87 30.465 81.246 24.947 1.00 0.00 N ATOM 658 CD2 HIS 87 30.751 80.407 26.944 1.00 0.00 C ATOM 659 CE1 HIS 87 30.294 82.211 25.887 1.00 0.00 C ATOM 660 NE2 HIS 87 30.458 81.748 27.113 1.00 0.00 N ATOM 661 N ASP 88 29.495 78.179 22.285 1.00 0.00 N ATOM 662 CA ASP 88 28.963 78.722 21.061 1.00 0.00 C ATOM 663 C ASP 88 27.519 78.350 20.877 1.00 0.00 C ATOM 664 O ASP 88 26.761 79.070 20.228 1.00 0.00 O ATOM 665 CB ASP 88 29.730 78.227 19.824 1.00 0.00 C ATOM 666 CG ASP 88 29.642 76.707 19.788 1.00 0.00 C ATOM 667 OD1 ASP 88 30.189 76.061 20.720 1.00 0.00 O ATOM 668 OD2 ASP 88 29.039 76.171 18.822 1.00 0.00 O ATOM 669 N PHE 89 27.095 77.214 21.449 1.00 0.00 N ATOM 670 CA PHE 89 25.770 76.687 21.261 1.00 0.00 C ATOM 671 C PHE 89 24.752 77.695 21.705 1.00 0.00 C ATOM 672 O PHE 89 23.713 77.855 21.065 1.00 0.00 O ATOM 673 CB PHE 89 25.609 75.373 22.056 1.00 0.00 C ATOM 674 CG PHE 89 24.235 74.821 21.903 1.00 0.00 C ATOM 675 CD1 PHE 89 23.824 74.252 20.719 1.00 0.00 C ATOM 676 CD2 PHE 89 23.370 74.842 22.973 1.00 0.00 C ATOM 677 CE1 PHE 89 22.556 73.737 20.596 1.00 0.00 C ATOM 678 CE2 PHE 89 22.101 74.328 22.856 1.00 0.00 C ATOM 679 CZ PHE 89 21.694 73.775 21.666 1.00 0.00 C ATOM 680 N ASP 90 25.009 78.411 22.813 1.00 0.00 N ATOM 681 CA ASP 90 24.032 79.354 23.273 1.00 0.00 C ATOM 682 C ASP 90 23.796 80.367 22.196 1.00 0.00 C ATOM 683 O ASP 90 22.652 80.703 21.892 1.00 0.00 O ATOM 684 CB ASP 90 24.495 80.110 24.534 1.00 0.00 C ATOM 685 CG ASP 90 23.337 80.935 25.090 1.00 0.00 C ATOM 686 OD1 ASP 90 22.738 81.734 24.322 1.00 0.00 O ATOM 687 OD2 ASP 90 23.042 80.780 26.306 1.00 0.00 O ATOM 688 N GLU 91 24.881 80.897 21.601 1.00 0.00 N ATOM 689 CA GLU 91 24.764 81.901 20.582 1.00 0.00 C ATOM 690 C GLU 91 24.258 81.319 19.291 1.00 0.00 C ATOM 691 O GLU 91 23.497 81.973 18.580 1.00 0.00 O ATOM 692 CB GLU 91 26.098 82.610 20.275 1.00 0.00 C ATOM 693 CG GLU 91 27.145 81.707 19.618 1.00 0.00 C ATOM 694 CD GLU 91 28.453 82.477 19.510 1.00 0.00 C ATOM 695 OE1 GLU 91 28.999 82.861 20.578 1.00 0.00 O ATOM 696 OE2 GLU 91 28.926 82.685 18.360 1.00 0.00 O ATOM 697 N LEU 92 24.669 80.078 18.949 1.00 0.00 N ATOM 698 CA LEU 92 24.398 79.546 17.640 1.00 0.00 C ATOM 699 C LEU 92 22.939 79.430 17.302 1.00 0.00 C ATOM 700 O LEU 92 22.454 80.157 16.437 1.00 0.00 O ATOM 701 CB LEU 92 24.994 78.137 17.462 1.00 0.00 C ATOM 702 CG LEU 92 24.733 77.520 16.076 1.00 0.00 C ATOM 703 CD1 LEU 92 25.429 78.320 14.965 1.00 0.00 C ATOM 704 CD2 LEU 92 25.086 76.026 16.051 1.00 0.00 C ATOM 705 N CYS 93 22.175 78.572 18.006 1.00 0.00 N ATOM 706 CA CYS 93 20.817 78.399 17.566 1.00 0.00 C ATOM 707 C CYS 93 19.921 78.715 18.711 1.00 0.00 C ATOM 708 O CYS 93 19.256 77.832 19.252 1.00 0.00 O ATOM 709 CB CYS 93 20.503 76.949 17.204 1.00 0.00 C ATOM 710 SG CYS 93 21.800 76.207 16.186 1.00 0.00 S ATOM 711 N LEU 94 19.878 79.995 19.110 1.00 0.00 N ATOM 712 CA LEU 94 19.045 80.375 20.210 1.00 0.00 C ATOM 713 C LEU 94 17.607 80.237 19.812 1.00 0.00 C ATOM 714 O LEU 94 16.793 79.734 20.585 1.00 0.00 O ATOM 715 CB LEU 94 19.251 81.830 20.657 1.00 0.00 C ATOM 716 CG LEU 94 18.352 82.231 21.842 1.00 0.00 C ATOM 717 CD1 LEU 94 18.674 81.404 23.098 1.00 0.00 C ATOM 718 CD2 LEU 94 18.413 83.745 22.094 1.00 0.00 C ATOM 719 N LYS 95 17.272 80.678 18.582 1.00 0.00 N ATOM 720 CA LYS 95 15.918 80.665 18.115 1.00 0.00 C ATOM 721 C LYS 95 15.904 80.257 16.649 1.00 0.00 C ATOM 722 O LYS 95 14.888 80.557 15.965 1.00 0.00 O ATOM 723 CB LYS 95 16.670 82.004 18.209 1.00 0.00 C ATOM 724 CG LYS 95 16.810 82.512 19.643 1.00 0.00 C ATOM 725 CD LYS 95 15.475 82.705 20.363 1.00 0.00 C ATOM 726 CE LYS 95 15.632 83.151 21.819 1.00 0.00 C ATOM 727 NZ LYS 95 14.301 83.304 22.451 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 67.23 51.3 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 68.73 46.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 63.27 63.6 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.58 50.0 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 79.69 51.4 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 89.83 40.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 58.64 72.7 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.09 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 52.75 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 73.31 50.0 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 57.00 20.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 64.95 66.7 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 33.72 75.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 72.44 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 24.83 100.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.89 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 62.89 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 51.31 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 96.16 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.11 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.11 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0526 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.28 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.54 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.26 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.44 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.72 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.05 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.81 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.71 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.66 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.76 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.22 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.15 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.649 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 1.830 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.170 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.745 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 1.932 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 1.261 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.850 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 3.555 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.542 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 2.069 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.661 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.069 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 1.597 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 29 33 39 40 40 40 DISTCA CA (P) 42.50 72.50 82.50 97.50 100.00 40 DISTCA CA (RMS) 0.64 1.03 1.38 1.94 2.11 DISTCA ALL (N) 86 169 215 263 292 303 303 DISTALL ALL (P) 28.38 55.78 70.96 86.80 96.37 303 DISTALL ALL (RMS) 0.66 1.13 1.52 2.18 3.02 DISTALL END of the results output