####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS147_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS147_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.38 2.38 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 71 - 95 1.83 2.46 LCS_AVERAGE: 50.62 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 72 - 94 0.96 2.53 LCS_AVERAGE: 40.88 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 9 13 40 11 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 9 13 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 9 13 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 9 13 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 9 13 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 9 13 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 9 13 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 9 13 40 3 4 6 18 28 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 9 13 40 3 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 5 13 40 3 5 18 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 5 13 40 3 5 6 11 27 33 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 5 13 40 3 5 15 30 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 5 13 40 3 5 6 6 31 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 5 8 40 3 5 6 16 22 33 35 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 5 8 40 3 4 6 7 7 8 13 25 35 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 3 25 40 3 4 4 5 6 12 17 30 37 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 23 25 40 9 25 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 23 25 40 15 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 23 25 40 11 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 23 25 40 4 7 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 23 25 40 15 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 23 25 40 15 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 23 25 40 15 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 23 25 40 12 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 23 25 40 14 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 23 25 40 14 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 23 25 40 15 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 23 25 40 15 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 23 25 40 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 23 25 40 3 4 22 26 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 11 25 40 3 8 12 24 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 63.83 ( 40.88 50.62 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 16 28 30 31 33 36 36 37 38 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 40.00 70.00 75.00 77.50 82.50 90.00 90.00 92.50 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.39 0.56 0.72 0.81 1.14 1.39 1.39 1.53 1.73 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 GDT RMS_ALL_AT 2.53 2.54 2.52 2.53 2.57 2.52 2.52 2.55 2.47 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 2.38 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.017 0 0.173 0.173 1.017 88.214 88.214 LGA S 57 S 57 0.332 0 0.076 0.068 0.462 100.000 100.000 LGA C 58 C 58 0.368 0 0.121 0.140 1.156 92.976 93.730 LGA K 59 K 59 1.116 0 0.559 1.223 7.783 67.024 55.926 LGA G 60 G 60 1.250 0 0.167 0.167 2.677 75.476 75.476 LGA R 61 R 61 0.463 0 0.130 0.558 1.325 95.238 90.563 LGA C 62 C 62 0.653 0 0.604 0.568 1.923 86.071 86.032 LGA F 63 F 63 3.236 0 0.412 1.652 11.786 51.905 24.545 LGA E 64 E 64 1.006 0 0.260 0.703 2.752 79.405 71.587 LGA L 65 L 65 2.012 0 0.634 1.292 4.209 60.119 56.012 LGA Q 66 Q 66 3.971 0 0.057 0.178 10.954 58.095 29.418 LGA E 67 E 67 2.862 0 0.129 1.187 8.773 60.952 32.487 LGA V 68 V 68 2.917 0 0.107 1.070 6.623 42.143 32.789 LGA G 69 G 69 5.466 0 0.065 0.065 6.302 27.024 27.024 LGA P 70 P 70 9.295 0 0.659 0.573 13.141 3.452 1.973 LGA P 71 P 71 7.626 0 0.452 0.557 10.635 19.286 11.293 LGA D 72 D 72 1.360 3 0.631 0.610 3.659 74.167 43.333 LGA C 73 C 73 0.454 0 0.201 0.259 1.041 90.595 90.556 LGA R 74 R 74 0.412 0 0.055 0.570 2.584 95.238 86.017 LGA C 75 C 75 0.301 0 0.169 0.171 1.216 92.976 90.635 LGA D 76 D 76 0.797 0 0.044 0.461 1.457 92.857 88.274 LGA N 77 N 77 2.019 0 0.081 0.903 5.761 72.976 54.167 LGA L 78 L 78 0.601 0 0.159 1.393 3.838 88.214 81.190 LGA C 79 C 79 0.662 0 0.028 0.055 0.842 90.476 90.476 LGA K 80 K 80 0.943 0 0.026 1.164 4.072 85.952 75.714 LGA S 81 S 81 1.132 0 0.049 0.690 3.678 81.429 75.079 LGA Y 82 Y 82 1.016 0 0.126 0.323 1.159 83.690 87.460 LGA S 83 S 83 1.156 0 0.247 0.228 2.069 83.690 78.730 LGA S 84 S 84 1.061 0 0.083 0.075 1.274 88.333 86.032 LGA C 85 C 85 0.619 0 0.054 0.079 1.054 90.476 87.460 LGA C 86 C 86 0.705 0 0.046 0.079 0.980 90.476 90.476 LGA H 87 H 87 0.870 0 0.092 1.035 7.082 90.476 60.095 LGA D 88 D 88 0.434 0 0.207 1.154 3.378 100.000 84.643 LGA F 89 F 89 0.438 0 0.067 0.127 0.671 97.619 99.134 LGA D 90 D 90 0.405 0 0.057 1.155 4.586 95.238 77.440 LGA E 91 E 91 0.318 0 0.084 0.402 1.382 100.000 94.762 LGA L 92 L 92 0.482 0 0.172 0.248 1.071 95.238 91.726 LGA C 93 C 93 0.524 0 0.028 0.079 1.490 95.238 92.143 LGA L 94 L 94 2.513 0 0.386 1.305 6.623 57.619 45.238 LGA K 95 K 95 3.346 0 0.632 1.350 6.314 41.190 38.201 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.378 2.343 3.519 77.039 69.151 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 37 1.53 85.000 78.873 2.271 LGA_LOCAL RMSD: 1.529 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.554 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.378 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.530123 * X + 0.766686 * Y + -0.362164 * Z + -4.795077 Y_new = 0.718671 * X + -0.179603 * Y + 0.671755 * Z + 20.509428 Z_new = 0.449979 * X + -0.616389 * Y + -0.646207 * Z + 59.991882 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.935251 -0.466742 -2.379806 [DEG: 53.5859 -26.7423 -136.3528 ] ZXZ: -2.647133 2.273400 2.510999 [DEG: -151.6695 130.2562 143.8696 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS147_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS147_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 37 1.53 78.873 2.38 REMARK ---------------------------------------------------------- MOLECULE T0543TS147_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gso_A ATOM 422 N GLY 56 34.627 72.158 18.380 1.00 3.81 N ATOM 423 CA GLY 56 33.667 72.295 19.431 1.00 3.81 C ATOM 424 C GLY 56 32.847 73.523 19.223 1.00 3.81 C ATOM 425 O GLY 56 32.726 74.371 20.107 1.00 3.81 O ATOM 426 N SER 57 32.315 73.657 17.991 1.00 2.95 N ATOM 427 CA SER 57 31.428 74.727 17.640 1.00 2.95 C ATOM 428 C SER 57 30.183 74.107 17.072 1.00 2.95 C ATOM 429 O SER 57 30.228 73.096 16.377 1.00 2.95 O ATOM 430 CB SER 57 32.020 75.650 16.564 1.00 2.95 C ATOM 431 OG SER 57 31.109 76.689 16.249 1.00 2.95 O ATOM 432 N CYS 58 29.025 74.662 17.464 1.00 2.76 N ATOM 433 CA CYS 58 27.687 74.325 17.057 1.00 2.76 C ATOM 434 C CYS 58 27.197 75.068 15.848 1.00 2.76 C ATOM 435 O CYS 58 25.986 75.255 15.739 1.00 2.76 O ATOM 436 CB CYS 58 26.634 74.409 18.174 1.00 2.76 C ATOM 437 SG CYS 58 26.765 72.988 19.305 1.00 2.76 S ATOM 438 N LYS 59 28.068 75.641 14.991 1.00 2.60 N ATOM 439 CA LYS 59 27.549 76.510 13.960 1.00 2.60 C ATOM 440 C LYS 59 26.443 75.906 13.129 1.00 2.60 C ATOM 441 O LYS 59 25.343 76.456 13.099 1.00 2.60 O ATOM 442 CB LYS 59 28.656 77.032 13.022 1.00 2.60 C ATOM 443 CG LYS 59 29.846 76.078 12.852 1.00 2.60 C ATOM 444 CD LYS 59 29.517 74.722 12.226 1.00 2.60 C ATOM 445 CE LYS 59 30.737 73.821 12.014 1.00 2.60 C ATOM 446 NZ LYS 59 31.185 73.245 13.300 1.00 2.60 N ATOM 447 N GLY 60 26.698 74.818 12.387 1.00 2.57 N ATOM 448 CA GLY 60 25.719 74.116 11.590 1.00 2.57 C ATOM 449 C GLY 60 24.943 73.087 12.354 1.00 2.57 C ATOM 450 O GLY 60 23.826 72.721 11.987 1.00 2.57 O ATOM 451 N ARG 61 25.591 72.564 13.405 1.00 2.52 N ATOM 452 CA ARG 61 25.293 71.371 14.144 1.00 2.52 C ATOM 453 C ARG 61 23.997 71.351 14.902 1.00 2.52 C ATOM 454 O ARG 61 23.539 70.261 15.240 1.00 2.52 O ATOM 455 CB ARG 61 26.444 70.985 15.081 1.00 2.52 C ATOM 456 CG ARG 61 27.761 70.820 14.314 1.00 2.52 C ATOM 457 CD ARG 61 28.795 69.941 15.017 1.00 2.52 C ATOM 458 NE ARG 61 29.035 70.510 16.370 1.00 2.52 N ATOM 459 CZ ARG 61 29.357 69.685 17.408 1.00 2.52 C ATOM 460 NH1 ARG 61 29.436 68.336 17.211 1.00 2.52 H ATOM 461 NH2 ARG 61 29.598 70.211 18.643 1.00 2.52 H ATOM 462 N CYS 62 23.376 72.508 15.208 1.00 5.06 N ATOM 463 CA CYS 62 22.205 72.529 16.049 1.00 5.06 C ATOM 464 C CYS 62 21.172 71.591 15.504 1.00 5.06 C ATOM 465 O CYS 62 20.516 70.898 16.281 1.00 5.06 O ATOM 466 CB CYS 62 21.571 73.929 16.184 1.00 5.06 C ATOM 467 SG CYS 62 22.678 75.117 17.003 1.00 5.06 S ATOM 468 N PHE 63 20.970 71.530 14.175 1.00 6.93 N ATOM 469 CA PHE 63 20.078 70.508 13.714 1.00 6.93 C ATOM 470 C PHE 63 20.950 69.339 13.402 1.00 6.93 C ATOM 471 O PHE 63 21.568 69.272 12.339 1.00 6.93 O ATOM 472 CB PHE 63 19.331 70.992 12.475 1.00 6.93 C ATOM 473 CG PHE 63 19.804 70.221 11.267 1.00 6.93 C ATOM 474 CD1 PHE 63 21.091 69.674 11.248 1.00 6.93 C ATOM 475 CD2 PHE 63 18.955 70.053 10.167 1.00 6.93 C ATOM 476 CE1 PHE 63 21.532 68.958 10.127 1.00 6.93 C ATOM 477 CE2 PHE 63 19.394 69.339 9.046 1.00 6.93 C ATOM 478 CZ PHE 63 20.683 68.790 9.026 1.00 6.93 C ATOM 479 N GLU 64 21.016 68.379 14.342 1.00 10.18 N ATOM 480 CA GLU 64 21.874 67.248 14.189 1.00 10.18 C ATOM 481 C GLU 64 21.472 66.316 15.278 1.00 10.18 C ATOM 482 O GLU 64 20.289 66.195 15.592 1.00 10.18 O ATOM 483 CB GLU 64 23.366 67.593 14.359 1.00 10.18 C ATOM 484 CG GLU 64 24.323 66.477 13.934 1.00 10.18 C ATOM 485 CD GLU 64 25.730 67.060 13.891 1.00 10.18 C ATOM 486 OE1 GLU 64 26.333 67.242 14.980 1.00 10.18 O ATOM 487 OE2 GLU 64 26.218 67.340 12.762 1.00 10.18 O ATOM 488 N LEU 65 22.446 65.583 15.846 1.00 9.09 N ATOM 489 CA LEU 65 22.117 64.692 16.915 1.00 9.09 C ATOM 490 C LEU 65 23.255 64.714 17.872 1.00 9.09 C ATOM 491 O LEU 65 24.140 65.566 17.796 1.00 9.09 O ATOM 492 CB LEU 65 21.973 63.224 16.470 1.00 9.09 C ATOM 493 CG LEU 65 20.932 62.992 15.358 1.00 9.09 C ATOM 494 CD1 LEU 65 19.529 63.440 15.795 1.00 9.09 C ATOM 495 CD2 LEU 65 21.385 63.606 14.023 1.00 9.09 C ATOM 496 N GLN 66 23.227 63.781 18.841 1.00 9.06 N ATOM 497 CA GLN 66 24.346 63.662 19.714 1.00 9.06 C ATOM 498 C GLN 66 25.428 63.103 18.858 1.00 9.06 C ATOM 499 O GLN 66 25.184 62.214 18.045 1.00 9.06 O ATOM 500 CB GLN 66 24.113 62.710 20.900 1.00 9.06 C ATOM 501 CG GLN 66 23.862 61.260 20.483 1.00 9.06 C ATOM 502 CD GLN 66 23.646 60.438 21.745 1.00 9.06 C ATOM 503 OE1 GLN 66 23.127 60.930 22.746 1.00 9.06 O ATOM 504 NE2 GLN 66 24.061 59.144 21.702 1.00 9.06 N ATOM 505 N GLU 67 26.650 63.643 18.983 1.00 9.28 N ATOM 506 CA GLU 67 27.698 63.144 18.149 1.00 9.28 C ATOM 507 C GLU 67 28.822 62.709 19.019 1.00 9.28 C ATOM 508 O GLU 67 29.168 63.366 19.999 1.00 9.28 O ATOM 509 CB GLU 67 28.236 64.186 17.150 1.00 9.28 C ATOM 510 CG GLU 67 28.709 65.487 17.801 1.00 9.28 C ATOM 511 CD GLU 67 27.476 66.303 18.166 1.00 9.28 C ATOM 512 OE1 GLU 67 26.521 66.330 17.344 1.00 9.28 O ATOM 513 OE2 GLU 67 27.468 66.905 19.273 1.00 9.28 O ATOM 514 N VAL 68 29.415 61.553 18.675 1.00 9.64 N ATOM 515 CA VAL 68 30.526 61.055 19.419 1.00 9.64 C ATOM 516 C VAL 68 31.695 61.143 18.500 1.00 9.64 C ATOM 517 O VAL 68 31.551 61.013 17.286 1.00 9.64 O ATOM 518 CB VAL 68 30.376 59.620 19.831 1.00 9.64 C ATOM 519 CG1 VAL 68 29.198 59.518 20.817 1.00 9.64 C ATOM 520 CG2 VAL 68 30.198 58.765 18.565 1.00 9.64 C ATOM 521 N GLY 69 32.892 61.405 19.052 1.00 8.82 N ATOM 522 CA GLY 69 34.019 61.499 18.181 1.00 8.82 C ATOM 523 C GLY 69 34.736 62.750 18.531 1.00 8.82 C ATOM 524 O GLY 69 34.939 63.086 19.698 1.00 8.82 O ATOM 525 N PRO 70 35.127 63.439 17.505 1.00 5.85 N ATOM 526 CA PRO 70 35.827 64.675 17.640 1.00 5.85 C ATOM 527 C PRO 70 34.992 65.691 18.345 1.00 5.85 C ATOM 528 O PRO 70 35.585 66.576 18.957 1.00 5.85 O ATOM 529 CB PRO 70 36.262 65.071 16.227 1.00 5.85 C ATOM 530 CG PRO 70 35.517 64.096 15.294 1.00 5.85 C ATOM 531 CD PRO 70 35.262 62.868 16.180 1.00 5.85 C ATOM 532 N PRO 71 33.688 65.645 18.301 1.00 4.23 N ATOM 533 CA PRO 71 32.987 66.651 19.029 1.00 4.23 C ATOM 534 C PRO 71 33.222 66.527 20.492 1.00 4.23 C ATOM 535 O PRO 71 32.796 65.541 21.095 1.00 4.23 O ATOM 536 CB PRO 71 31.535 66.573 18.577 1.00 4.23 C ATOM 537 CG PRO 71 31.659 66.083 17.120 1.00 4.23 C ATOM 538 CD PRO 71 32.964 65.262 17.097 1.00 4.23 C ATOM 539 N ASP 72 33.901 67.531 21.072 1.00 2.78 N ATOM 540 CA ASP 72 34.143 67.579 22.479 1.00 2.78 C ATOM 541 C ASP 72 32.850 67.901 23.151 1.00 2.78 C ATOM 542 O ASP 72 32.556 67.402 24.235 1.00 2.78 O ATOM 543 CB ASP 72 35.185 68.643 22.876 1.00 2.78 C ATOM 544 CG ASP 72 34.688 70.024 22.469 1.00 2.78 C ATOM 545 OD1 ASP 72 33.990 70.128 21.424 1.00 2.78 O ATOM 546 OD2 ASP 72 35.009 70.998 23.199 1.00 2.78 O ATOM 547 N CYS 73 32.035 68.753 22.497 1.00 2.61 N ATOM 548 CA CYS 73 30.804 69.195 23.086 1.00 2.61 C ATOM 549 C CYS 73 29.653 68.723 22.252 1.00 2.61 C ATOM 550 O CYS 73 29.839 68.197 21.155 1.00 2.61 O ATOM 551 CB CYS 73 30.720 70.727 23.214 1.00 2.61 C ATOM 552 SG CYS 73 31.042 71.559 21.634 1.00 2.61 S ATOM 553 N ARG 74 28.417 68.881 22.777 1.00 2.26 N ATOM 554 CA ARG 74 27.271 68.404 22.057 1.00 2.26 C ATOM 555 C ARG 74 26.334 69.534 21.753 1.00 2.26 C ATOM 556 O ARG 74 26.152 70.463 22.539 1.00 2.26 O ATOM 557 CB ARG 74 26.476 67.312 22.797 1.00 2.26 C ATOM 558 CG ARG 74 27.345 66.096 23.128 1.00 2.26 C ATOM 559 CD ARG 74 26.599 64.762 23.167 1.00 2.26 C ATOM 560 NE ARG 74 25.578 64.799 24.247 1.00 2.26 N ATOM 561 CZ ARG 74 25.209 63.624 24.837 1.00 2.26 C ATOM 562 NH1 ARG 74 25.867 62.471 24.519 1.00 2.26 H ATOM 563 NH2 ARG 74 24.183 63.595 25.735 1.00 2.26 H ATOM 564 N CYS 75 25.811 69.512 20.513 1.00 2.54 N ATOM 565 CA CYS 75 24.851 70.426 19.952 1.00 2.54 C ATOM 566 C CYS 75 23.411 70.103 20.281 1.00 2.54 C ATOM 567 O CYS 75 22.535 70.934 20.046 1.00 2.54 O ATOM 568 CB CYS 75 25.026 70.619 18.439 1.00 2.54 C ATOM 569 SG CYS 75 26.647 71.366 18.076 1.00 2.54 S ATOM 570 N ASP 76 23.099 68.881 20.766 1.00 2.58 N ATOM 571 CA ASP 76 21.716 68.501 20.944 1.00 2.58 C ATOM 572 C ASP 76 21.050 69.303 22.029 1.00 2.58 C ATOM 573 O ASP 76 21.701 69.910 22.875 1.00 2.58 O ATOM 574 CB ASP 76 21.521 67.007 21.262 1.00 2.58 C ATOM 575 CG ASP 76 22.191 66.696 22.593 1.00 2.58 C ATOM 576 OD1 ASP 76 23.327 67.191 22.822 1.00 2.58 O ATOM 577 OD2 ASP 76 21.569 65.959 23.403 1.00 2.58 O ATOM 578 N ASN 77 19.700 69.321 22.000 1.00 2.61 N ATOM 579 CA ASN 77 18.860 70.066 22.903 1.00 2.61 C ATOM 580 C ASN 77 19.027 69.547 24.300 1.00 2.61 C ATOM 581 O ASN 77 19.006 70.300 25.271 1.00 2.61 O ATOM 582 CB ASN 77 17.371 69.936 22.553 1.00 2.61 C ATOM 583 CG ASN 77 16.613 70.910 23.432 1.00 2.61 C ATOM 584 OD1 ASN 77 17.207 71.701 24.161 1.00 2.61 O ATOM 585 ND2 ASN 77 15.256 70.851 23.365 1.00 2.61 N ATOM 586 N LEU 78 19.193 68.221 24.409 1.00 3.38 N ATOM 587 CA LEU 78 19.325 67.456 25.614 1.00 3.38 C ATOM 588 C LEU 78 20.605 67.802 26.324 1.00 3.38 C ATOM 589 O LEU 78 20.718 67.609 27.535 1.00 3.38 O ATOM 590 CB LEU 78 19.269 65.945 25.305 1.00 3.38 C ATOM 591 CG LEU 78 19.500 64.993 26.494 1.00 3.38 C ATOM 592 CD1 LEU 78 20.984 64.928 26.855 1.00 3.38 C ATOM 593 CD2 LEU 78 18.610 65.346 27.696 1.00 3.38 C ATOM 594 N CYS 79 21.596 68.353 25.599 1.00 4.34 N ATOM 595 CA CYS 79 22.925 68.543 26.115 1.00 4.34 C ATOM 596 C CYS 79 22.909 69.315 27.395 1.00 4.34 C ATOM 597 O CYS 79 23.757 69.077 28.250 1.00 4.34 O ATOM 598 CB CYS 79 23.874 69.277 25.139 1.00 4.34 C ATOM 599 SG CYS 79 23.426 71.013 24.823 1.00 4.34 S ATOM 600 N LYS 80 21.960 70.246 27.587 1.00 4.23 N ATOM 601 CA LYS 80 21.976 71.047 28.780 1.00 4.23 C ATOM 602 C LYS 80 21.918 70.162 29.989 1.00 4.23 C ATOM 603 O LYS 80 22.590 70.431 30.985 1.00 4.23 O ATOM 604 CB LYS 80 20.792 72.025 28.854 1.00 4.23 C ATOM 605 CG LYS 80 20.872 73.159 27.827 1.00 4.23 C ATOM 606 CD LYS 80 19.580 73.972 27.712 1.00 4.23 C ATOM 607 CE LYS 80 19.714 75.229 26.851 1.00 4.23 C ATOM 608 NZ LYS 80 19.736 74.868 25.417 1.00 4.23 N ATOM 609 N SER 81 21.127 69.075 29.947 1.00 3.97 N ATOM 610 CA SER 81 21.032 68.228 31.101 1.00 3.97 C ATOM 611 C SER 81 22.408 67.726 31.422 1.00 3.97 C ATOM 612 O SER 81 22.838 67.746 32.573 1.00 3.97 O ATOM 613 CB SER 81 20.135 67.003 30.852 1.00 3.97 C ATOM 614 OG SER 81 20.074 66.191 32.016 1.00 3.97 O ATOM 615 N TYR 82 23.131 67.268 30.383 1.00 2.82 N ATOM 616 CA TYR 82 24.462 66.735 30.473 1.00 2.82 C ATOM 617 C TYR 82 25.459 67.793 30.829 1.00 2.82 C ATOM 618 O TYR 82 26.464 67.502 31.474 1.00 2.82 O ATOM 619 CB TYR 82 24.887 65.983 29.206 1.00 2.82 C ATOM 620 CG TYR 82 24.118 64.712 29.304 1.00 2.82 C ATOM 621 CD1 TYR 82 22.749 64.729 29.196 1.00 2.82 C ATOM 622 CD2 TYR 82 24.752 63.508 29.507 1.00 2.82 C ATOM 623 CE1 TYR 82 22.015 63.571 29.286 1.00 2.82 C ATOM 624 CE2 TYR 82 24.026 62.344 29.599 1.00 2.82 C ATOM 625 CZ TYR 82 22.655 62.375 29.489 1.00 2.82 C ATOM 626 OH TYR 82 21.904 61.184 29.582 1.00 2.82 H ATOM 627 N SER 83 25.210 69.050 30.421 1.00 3.60 N ATOM 628 CA SER 83 26.142 70.122 30.629 1.00 3.60 C ATOM 629 C SER 83 27.291 69.934 29.684 1.00 3.60 C ATOM 630 O SER 83 28.372 70.483 29.893 1.00 3.60 O ATOM 631 CB SER 83 26.710 70.170 32.057 1.00 3.60 C ATOM 632 OG SER 83 25.667 70.391 32.995 1.00 3.60 O ATOM 633 N SER 84 27.070 69.117 28.635 1.00 3.12 N ATOM 634 CA SER 84 27.997 68.850 27.564 1.00 3.12 C ATOM 635 C SER 84 27.922 69.922 26.507 1.00 3.12 C ATOM 636 O SER 84 28.679 69.885 25.539 1.00 3.12 O ATOM 637 CB SER 84 27.730 67.506 26.861 1.00 3.12 C ATOM 638 OG SER 84 26.473 67.537 26.201 1.00 3.12 O ATOM 639 N CYS 85 27.013 70.904 26.652 1.00 2.79 N ATOM 640 CA CYS 85 26.759 71.864 25.607 1.00 2.79 C ATOM 641 C CYS 85 27.979 72.690 25.310 1.00 2.79 C ATOM 642 O CYS 85 28.796 72.978 26.184 1.00 2.79 O ATOM 643 CB CYS 85 25.615 72.835 25.954 1.00 2.79 C ATOM 644 SG CYS 85 24.076 72.009 26.472 1.00 2.79 S ATOM 645 N CYS 86 28.119 73.084 24.023 1.00 2.45 N ATOM 646 CA CYS 86 29.209 73.892 23.557 1.00 2.45 C ATOM 647 C CYS 86 28.946 75.282 24.045 1.00 2.45 C ATOM 648 O CYS 86 27.808 75.639 24.344 1.00 2.45 O ATOM 649 CB CYS 86 29.270 73.997 22.024 1.00 2.45 C ATOM 650 SG CYS 86 29.261 72.399 21.158 1.00 2.45 S ATOM 651 N HIS 87 30.007 76.106 24.146 1.00 3.07 N ATOM 652 CA HIS 87 29.860 77.460 24.602 1.00 3.07 C ATOM 653 C HIS 87 29.011 78.174 23.599 1.00 3.07 C ATOM 654 O HIS 87 28.128 78.954 23.947 1.00 3.07 O ATOM 655 CB HIS 87 31.196 78.218 24.652 1.00 3.07 C ATOM 656 CG HIS 87 32.205 77.605 25.578 1.00 3.07 C ATOM 657 ND1 HIS 87 33.074 76.601 25.212 1.00 3.07 N ATOM 658 CD2 HIS 87 32.483 77.883 26.880 1.00 3.07 C ATOM 659 CE1 HIS 87 33.830 76.322 26.304 1.00 3.07 C ATOM 660 NE2 HIS 87 33.509 77.075 27.341 1.00 3.07 N ATOM 661 N ASP 88 29.287 77.889 22.314 1.00 2.96 N ATOM 662 CA ASP 88 28.686 78.453 21.141 1.00 2.96 C ATOM 663 C ASP 88 27.262 78.001 21.031 1.00 2.96 C ATOM 664 O ASP 88 26.456 78.630 20.349 1.00 2.96 O ATOM 665 CB ASP 88 29.400 77.990 19.860 1.00 2.96 C ATOM 666 CG ASP 88 30.819 78.538 19.896 1.00 2.96 C ATOM 667 OD1 ASP 88 31.068 79.468 20.708 1.00 2.96 O ATOM 668 OD2 ASP 88 31.673 78.029 19.122 1.00 2.96 O ATOM 669 N PHE 89 26.915 76.893 21.705 1.00 2.92 N ATOM 670 CA PHE 89 25.634 76.264 21.556 1.00 2.92 C ATOM 671 C PHE 89 24.517 77.243 21.751 1.00 2.92 C ATOM 672 O PHE 89 23.629 77.334 20.905 1.00 2.92 O ATOM 673 CB PHE 89 25.450 75.135 22.586 1.00 2.92 C ATOM 674 CG PHE 89 24.051 74.622 22.530 1.00 2.92 C ATOM 675 CD1 PHE 89 23.681 73.657 21.623 1.00 2.92 C ATOM 676 CD2 PHE 89 23.106 75.109 23.403 1.00 2.92 C ATOM 677 CE1 PHE 89 22.387 73.194 21.591 1.00 2.92 C ATOM 678 CE2 PHE 89 21.811 74.649 23.373 1.00 2.92 C ATOM 679 CZ PHE 89 21.447 73.686 22.463 1.00 2.92 C ATOM 680 N ASP 90 24.535 78.019 22.846 1.00 2.73 N ATOM 681 CA ASP 90 23.430 78.894 23.121 1.00 2.73 C ATOM 682 C ASP 90 23.290 79.886 22.018 1.00 2.73 C ATOM 683 O ASP 90 22.205 80.084 21.477 1.00 2.73 O ATOM 684 CB ASP 90 23.634 79.698 24.417 1.00 2.73 C ATOM 685 CG ASP 90 22.301 80.320 24.797 1.00 2.73 C ATOM 686 OD1 ASP 90 21.265 79.638 24.583 1.00 2.73 O ATOM 687 OD2 ASP 90 22.293 81.478 25.295 1.00 2.73 O ATOM 688 N GLU 91 24.406 80.517 21.628 1.00 2.97 N ATOM 689 CA GLU 91 24.306 81.572 20.672 1.00 2.97 C ATOM 690 C GLU 91 23.798 81.038 19.368 1.00 2.97 C ATOM 691 O GLU 91 22.833 81.556 18.810 1.00 2.97 O ATOM 692 CB GLU 91 25.673 82.238 20.438 1.00 2.97 C ATOM 693 CG GLU 91 25.623 83.581 19.713 1.00 2.97 C ATOM 694 CD GLU 91 27.003 84.209 19.862 1.00 2.97 C ATOM 695 OE1 GLU 91 27.886 83.546 20.471 1.00 2.97 O ATOM 696 OE2 GLU 91 27.193 85.356 19.378 1.00 2.97 O ATOM 697 N LEU 92 24.428 79.965 18.858 1.00 2.71 N ATOM 698 CA LEU 92 24.077 79.432 17.573 1.00 2.71 C ATOM 699 C LEU 92 22.721 78.795 17.580 1.00 2.71 C ATOM 700 O LEU 92 21.901 79.066 16.705 1.00 2.71 O ATOM 701 CB LEU 92 25.097 78.382 17.122 1.00 2.71 C ATOM 702 CG LEU 92 26.502 78.991 16.967 1.00 2.71 C ATOM 703 CD1 LEU 92 27.530 77.941 16.535 1.00 2.71 C ATOM 704 CD2 LEU 92 26.473 80.211 16.031 1.00 2.71 C ATOM 705 N CYS 93 22.451 77.927 18.573 1.00 2.70 N ATOM 706 CA CYS 93 21.216 77.200 18.597 1.00 2.70 C ATOM 707 C CYS 93 20.058 78.094 18.916 1.00 2.70 C ATOM 708 O CYS 93 18.966 77.893 18.387 1.00 2.70 O ATOM 709 CB CYS 93 21.237 75.990 19.545 1.00 2.70 C ATOM 710 SG CYS 93 22.453 74.752 18.993 1.00 2.70 S ATOM 711 N LEU 94 20.392 80.077 19.034 1.00 6.88 N ATOM 712 CA LEU 94 19.509 81.203 18.906 1.00 6.88 C ATOM 713 C LEU 94 19.482 81.717 17.496 1.00 6.88 C ATOM 714 O LEU 94 18.431 82.129 17.016 1.00 6.88 O ATOM 715 CB LEU 94 19.844 82.363 19.859 1.00 6.88 C ATOM 716 CG LEU 94 19.276 82.153 21.276 1.00 6.88 C ATOM 717 CD1 LEU 94 19.693 80.802 21.871 1.00 6.88 C ATOM 718 CD2 LEU 94 19.633 83.335 22.191 1.00 6.88 C ATOM 719 N LYS 95 20.622 81.719 16.782 1.00 7.15 N ATOM 720 CA LYS 95 20.637 82.295 15.462 1.00 7.15 C ATOM 721 C LYS 95 19.736 81.557 14.494 1.00 7.15 C ATOM 722 O LYS 95 19.046 82.184 13.695 1.00 7.15 O ATOM 723 CB LYS 95 22.033 82.291 14.816 1.00 7.15 C ATOM 724 CG LYS 95 22.037 82.906 13.413 1.00 7.15 C ATOM 725 CD LYS 95 23.428 83.067 12.798 1.00 7.15 C ATOM 726 CE LYS 95 23.391 83.499 11.330 1.00 7.15 C ATOM 727 NZ LYS 95 24.763 83.534 10.774 1.00 7.15 N TER 7142 ILE 887 END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 58.90 61.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 65.17 62.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 38.58 59.1 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.18 63.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 71.02 65.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 76.49 60.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 61.27 72.7 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.05 30.4 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 72.25 29.4 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 93.36 27.8 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 33.53 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.83 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 73.53 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 59.91 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 96.85 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.69 0.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 66.69 0.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 72.88 0.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 31.43 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.38 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.38 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0595 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.68 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.25 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.57 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.86 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.58 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.53 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.25 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.15 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.28 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.55 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.01 219 100.0 219 CRMSALL BURIED . . . . . . . . 1.89 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.819 0.488 0.564 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.720 0.456 0.534 29 100.0 29 ERRCA BURIED . . . . . . . . 3.081 0.570 0.642 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.698 0.464 0.527 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.618 0.439 0.501 142 100.0 142 ERRMC BURIED . . . . . . . . 2.905 0.528 0.596 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.347 0.356 0.362 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 2.317 0.370 0.383 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 2.260 0.317 0.312 103 100.0 103 ERRSC BURIED . . . . . . . . 2.572 0.455 0.490 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.549 0.417 0.456 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.462 0.385 0.419 219 100.0 219 ERRALL BURIED . . . . . . . . 2.775 0.499 0.552 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 29 32 38 40 40 40 DISTCA CA (P) 42.50 72.50 80.00 95.00 100.00 40 DISTCA CA (RMS) 0.72 1.01 1.19 1.85 2.38 DISTCA ALL (N) 87 193 217 259 295 303 303 DISTALL ALL (P) 28.71 63.70 71.62 85.48 97.36 303 DISTALL ALL (RMS) 0.68 1.15 1.35 2.02 3.10 DISTALL END of the results output