####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 197), selected 40 , name T0543TS142_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS142_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 56 - 72 4.84 17.24 LONGEST_CONTINUOUS_SEGMENT: 17 79 - 95 4.80 18.50 LCS_AVERAGE: 42.12 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 86 - 95 1.47 22.26 LCS_AVERAGE: 17.69 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 86 - 93 0.83 21.37 LCS_AVERAGE: 12.12 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 3 17 0 3 4 6 7 10 10 11 12 13 14 15 15 16 17 18 19 20 22 24 LCS_GDT S 57 S 57 3 7 17 3 3 4 6 8 10 10 11 12 13 14 15 15 15 17 18 19 20 22 24 LCS_GDT C 58 C 58 5 7 17 3 4 5 6 8 10 10 11 12 13 14 15 15 15 17 18 21 21 23 24 LCS_GDT K 59 K 59 5 7 17 3 4 5 6 7 7 7 8 10 12 13 15 15 15 17 18 19 20 21 24 LCS_GDT G 60 G 60 5 7 17 3 4 5 6 7 7 7 8 11 12 13 14 15 15 17 18 19 21 23 24 LCS_GDT R 61 R 61 5 7 17 3 4 5 6 7 7 9 11 12 13 14 15 15 17 18 19 21 22 23 24 LCS_GDT C 62 C 62 5 7 17 3 4 5 6 8 10 10 11 12 13 14 15 15 17 18 21 21 22 23 24 LCS_GDT F 63 F 63 4 7 17 3 4 5 6 7 10 10 11 12 12 13 14 15 17 18 21 21 22 23 24 LCS_GDT E 64 E 64 4 6 17 3 3 4 6 8 10 10 11 12 12 13 14 15 17 18 21 21 22 23 24 LCS_GDT L 65 L 65 4 6 17 3 3 4 5 5 7 9 11 12 12 13 14 15 17 18 21 21 22 23 24 LCS_GDT Q 66 Q 66 4 6 17 3 4 4 6 8 10 10 11 12 12 13 14 15 17 18 21 21 22 23 24 LCS_GDT E 67 E 67 4 6 17 3 4 4 6 8 10 10 11 12 12 13 14 15 17 18 21 21 22 23 24 LCS_GDT V 68 V 68 4 6 17 3 4 4 6 8 10 10 11 12 12 13 14 15 17 18 21 21 22 23 24 LCS_GDT G 69 G 69 4 6 17 3 3 4 6 8 10 10 11 12 12 13 14 15 17 18 21 21 22 23 24 LCS_GDT P 70 P 70 4 5 17 2 3 4 4 7 8 9 9 11 13 13 14 15 17 18 21 21 22 23 24 LCS_GDT P 71 P 71 3 5 17 3 3 4 4 7 8 9 10 11 13 13 14 15 17 18 21 21 22 23 24 LCS_GDT D 72 D 72 4 5 17 3 3 4 4 5 7 9 10 11 13 13 14 15 17 18 21 21 22 23 24 LCS_GDT C 73 C 73 4 6 16 3 3 4 4 7 8 9 10 11 13 13 14 15 17 18 21 21 22 23 24 LCS_GDT R 74 R 74 4 6 16 3 3 4 5 7 8 9 10 11 13 13 14 15 17 18 21 21 22 23 24 LCS_GDT C 75 C 75 4 6 16 1 3 4 4 7 8 9 10 11 13 14 15 15 17 18 21 21 22 23 24 LCS_GDT D 76 D 76 3 6 16 3 3 4 4 7 8 9 10 11 13 14 15 15 16 18 21 21 22 23 24 LCS_GDT N 77 N 77 3 6 16 3 3 3 4 7 8 9 10 11 13 14 15 15 16 18 21 21 22 23 24 LCS_GDT L 78 L 78 3 6 16 3 3 3 4 7 8 9 9 11 13 14 15 15 17 18 21 21 22 23 24 LCS_GDT C 79 C 79 3 5 17 3 3 3 3 5 7 8 10 11 13 14 15 15 17 18 21 21 22 23 24 LCS_GDT K 80 K 80 3 4 17 3 3 3 4 4 5 7 10 11 13 14 15 16 17 18 21 21 22 23 24 LCS_GDT S 81 S 81 4 7 17 3 4 4 5 7 7 8 10 11 13 15 15 16 17 18 21 21 22 23 24 LCS_GDT Y 82 Y 82 4 7 17 3 4 4 4 7 7 7 10 11 13 15 15 16 17 18 21 21 22 23 24 LCS_GDT S 83 S 83 5 7 17 3 4 5 5 7 7 7 9 10 13 15 15 16 17 18 19 21 22 23 24 LCS_GDT S 84 S 84 5 7 17 3 4 5 5 7 7 7 11 11 13 15 15 16 17 18 19 20 21 23 24 LCS_GDT C 85 C 85 5 7 17 3 4 5 5 7 9 9 11 12 13 15 15 16 17 18 19 20 20 23 24 LCS_GDT C 86 C 86 8 10 17 4 7 8 10 10 10 10 11 12 13 15 15 16 17 18 19 20 20 23 23 LCS_GDT H 87 H 87 8 10 17 4 7 8 10 10 10 10 11 12 13 15 15 16 17 18 19 20 20 23 23 LCS_GDT D 88 D 88 8 10 17 4 7 8 10 10 10 10 11 12 13 15 15 16 17 18 19 20 20 23 23 LCS_GDT F 89 F 89 8 10 17 4 7 8 10 10 10 10 11 12 13 15 15 16 17 18 19 20 20 23 23 LCS_GDT D 90 D 90 8 10 17 3 7 8 10 10 10 10 11 12 12 15 15 16 17 18 19 20 20 23 24 LCS_GDT E 91 E 91 8 10 17 4 7 8 10 10 10 10 11 12 13 15 15 16 17 18 19 20 20 23 24 LCS_GDT L 92 L 92 8 10 17 3 7 8 10 10 10 10 10 12 13 15 15 16 17 18 18 20 20 23 24 LCS_GDT C 93 C 93 8 10 17 3 5 8 10 10 10 10 10 12 12 15 15 16 16 18 18 19 19 22 23 LCS_GDT L 94 L 94 5 10 17 3 5 5 10 10 10 10 11 12 13 15 15 16 17 18 18 20 20 23 23 LCS_GDT K 95 K 95 5 10 17 3 5 6 10 10 10 10 11 12 13 15 15 16 17 18 18 20 20 23 24 LCS_AVERAGE LCS_A: 23.98 ( 12.12 17.69 42.12 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 10 10 10 10 11 12 13 15 15 16 17 18 21 21 22 23 24 GDT PERCENT_AT 10.00 17.50 20.00 25.00 25.00 25.00 25.00 27.50 30.00 32.50 37.50 37.50 40.00 42.50 45.00 52.50 52.50 55.00 57.50 60.00 GDT RMS_LOCAL 0.26 0.67 0.83 1.47 1.47 1.47 1.47 2.42 2.75 3.62 4.18 4.18 4.36 5.00 5.10 6.10 6.10 6.28 6.54 6.96 GDT RMS_ALL_AT 19.95 20.80 21.37 22.26 22.26 22.26 22.26 17.99 17.99 17.83 19.09 19.09 19.23 17.81 18.02 17.47 17.47 16.88 16.40 17.03 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 2.814 0 0.298 0.298 3.399 55.357 55.357 LGA S 57 S 57 1.395 1 0.615 0.584 3.143 71.429 61.190 LGA C 58 C 58 1.751 1 0.268 0.276 4.498 67.143 50.952 LGA K 59 K 59 7.409 4 0.625 0.582 9.692 12.857 5.767 LGA G 60 G 60 9.291 0 0.218 0.218 9.650 3.452 3.452 LGA R 61 R 61 5.575 6 0.154 0.167 6.173 29.405 12.251 LGA C 62 C 62 1.308 1 0.105 0.138 3.813 75.119 57.302 LGA F 63 F 63 2.912 6 0.271 0.261 3.869 65.000 27.576 LGA E 64 E 64 1.471 4 0.062 0.073 3.490 75.357 39.048 LGA L 65 L 65 4.196 3 0.648 0.590 7.119 48.571 25.536 LGA Q 66 Q 66 2.101 4 0.149 0.197 2.753 60.952 35.185 LGA E 67 E 67 2.136 4 0.559 0.511 2.579 70.833 37.831 LGA V 68 V 68 2.637 2 0.060 0.093 4.175 62.857 41.224 LGA G 69 G 69 2.398 0 0.389 0.389 5.360 46.786 46.786 LGA P 70 P 70 7.176 2 0.101 0.171 9.648 8.333 4.830 LGA P 71 P 71 9.993 2 0.599 0.605 11.845 0.833 0.476 LGA D 72 D 72 10.742 3 0.122 0.155 10.881 0.000 0.000 LGA C 73 C 73 11.141 1 0.254 0.329 11.311 0.000 0.000 LGA R 74 R 74 12.556 6 0.660 0.607 14.535 0.000 0.000 LGA C 75 C 75 11.964 1 0.584 0.568 13.623 0.000 0.000 LGA D 76 D 76 17.403 3 0.630 0.606 20.887 0.000 0.000 LGA N 77 N 77 21.852 3 0.638 0.583 23.406 0.000 0.000 LGA L 78 L 78 22.435 3 0.551 0.522 23.722 0.000 0.000 LGA C 79 C 79 18.836 1 0.631 0.603 20.771 0.000 0.000 LGA K 80 K 80 23.562 4 0.027 0.034 24.881 0.000 0.000 LGA S 81 S 81 22.897 1 0.470 0.445 23.792 0.000 0.000 LGA Y 82 Y 82 21.163 7 0.620 0.562 21.443 0.000 0.000 LGA S 83 S 83 20.586 1 0.303 0.319 22.709 0.000 0.000 LGA S 84 S 84 14.235 1 0.038 0.043 16.560 0.000 0.000 LGA C 85 C 85 18.423 1 0.023 0.031 21.028 0.000 0.000 LGA C 86 C 86 19.811 1 0.672 0.617 23.092 0.000 0.000 LGA H 87 H 87 23.296 5 0.114 0.117 25.439 0.000 0.000 LGA D 88 D 88 22.998 3 0.209 0.201 24.505 0.000 0.000 LGA F 89 F 89 24.846 6 0.166 0.175 28.434 0.000 0.000 LGA D 90 D 90 30.981 3 0.036 0.037 32.909 0.000 0.000 LGA E 91 E 91 29.495 4 0.283 0.289 29.603 0.000 0.000 LGA L 92 L 92 26.597 3 0.105 0.124 28.607 0.000 0.000 LGA C 93 C 93 31.382 1 0.053 0.053 34.678 0.000 0.000 LGA L 94 L 94 34.803 3 0.222 0.213 35.277 0.000 0.000 LGA K 95 K 95 32.775 4 0.481 0.481 33.652 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 197 65.02 40 SUMMARY(RMSD_GDC): 10.844 10.713 10.891 18.857 12.619 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 11 2.42 30.625 26.450 0.436 LGA_LOCAL RMSD: 2.423 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.992 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 10.844 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.127811 * X + -0.946100 * Y + 0.297588 * Z + 46.019539 Y_new = 0.636726 * X + 0.308324 * Y + 0.706765 * Z + 86.134346 Z_new = -0.760424 * X + 0.099150 * Y + 0.641814 * Z + 14.806884 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.372697 0.863965 0.153272 [DEG: 78.6498 49.5016 8.7818 ] ZXZ: 2.743067 0.873935 -1.441140 [DEG: 157.1661 50.0728 -82.5713 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS142_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS142_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 11 2.42 26.450 10.84 REMARK ---------------------------------------------------------- MOLECULE T0543TS142_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 276 N GLY 56 32.896 72.315 19.496 1.00 0.00 N ATOM 277 CA GLY 56 32.012 72.911 20.490 1.00 0.00 C ATOM 278 C GLY 56 31.022 73.871 19.843 1.00 0.00 C ATOM 279 O GLY 56 29.876 73.982 20.276 1.00 0.00 O ATOM 281 N SER 57 31.473 74.564 18.803 1.00 0.00 N ATOM 282 CA SER 57 30.629 75.518 18.093 1.00 0.00 C ATOM 283 C SER 57 29.462 74.817 17.409 1.00 0.00 C ATOM 284 O SER 57 28.357 75.354 17.340 1.00 0.00 O ATOM 285 CB SER 57 31.448 76.300 17.079 1.00 0.00 C ATOM 286 N CYS 58 29.715 73.614 16.903 1.00 0.00 N ATOM 287 CA CYS 58 28.686 72.837 16.223 1.00 0.00 C ATOM 288 C CYS 58 27.563 72.454 17.179 1.00 0.00 C ATOM 289 O CYS 58 26.384 72.599 16.855 1.00 0.00 O ATOM 290 CB CYS 58 29.293 71.594 15.591 1.00 0.00 C ATOM 291 N LYS 59 27.935 71.966 18.357 1.00 0.00 N ATOM 292 CA LYS 59 26.960 71.500 19.336 1.00 0.00 C ATOM 293 C LYS 59 25.974 72.602 19.698 1.00 0.00 C ATOM 294 O LYS 59 24.802 72.336 19.965 1.00 0.00 O ATOM 295 CB LYS 59 27.665 70.985 20.581 1.00 0.00 C ATOM 296 N GLY 60 26.454 73.841 19.705 1.00 0.00 N ATOM 297 CA GLY 60 25.649 74.973 20.147 1.00 0.00 C ATOM 298 C GLY 60 24.735 75.467 19.034 1.00 0.00 C ATOM 299 O GLY 60 23.624 75.932 19.290 1.00 0.00 O ATOM 301 N ARG 61 25.209 75.364 17.797 1.00 0.00 N ATOM 302 CA ARG 61 24.518 75.960 16.659 1.00 0.00 C ATOM 303 C ARG 61 23.825 74.897 15.817 1.00 0.00 C ATOM 304 O ARG 61 22.872 75.188 15.093 1.00 0.00 O ATOM 305 CB ARG 61 25.491 76.762 15.809 1.00 0.00 C ATOM 306 N CYS 62 24.308 73.663 15.916 1.00 0.00 N ATOM 307 CA CYS 62 23.819 72.579 15.072 1.00 0.00 C ATOM 308 C CYS 62 22.327 72.352 15.277 1.00 0.00 C ATOM 309 O CYS 62 21.779 72.671 16.332 1.00 0.00 O ATOM 310 CB CYS 62 24.594 71.300 15.349 1.00 0.00 C ATOM 311 N PHE 63 21.673 71.798 14.261 1.00 0.00 N ATOM 312 CA PHE 63 20.260 71.450 14.358 1.00 0.00 C ATOM 313 C PHE 63 20.074 70.063 14.959 1.00 0.00 C ATOM 314 O PHE 63 19.068 69.789 15.612 1.00 0.00 O ATOM 315 CB PHE 63 19.600 71.530 12.990 1.00 0.00 C ATOM 316 N GLU 64 21.051 69.190 14.735 1.00 0.00 N ATOM 317 CA GLU 64 21.008 67.836 15.273 1.00 0.00 C ATOM 318 C GLU 64 22.354 67.434 15.859 1.00 0.00 C ATOM 319 O GLU 64 23.400 67.658 15.249 1.00 0.00 O ATOM 320 CB GLU 64 20.581 66.852 14.195 1.00 0.00 C ATOM 321 N LEU 65 22.322 66.836 17.046 1.00 0.00 N ATOM 322 CA LEU 65 23.539 66.372 17.703 1.00 0.00 C ATOM 323 C LEU 65 23.415 64.912 18.121 1.00 0.00 C ATOM 324 O LEU 65 22.435 64.518 18.753 1.00 0.00 O ATOM 325 CB LEU 65 23.859 67.245 18.906 1.00 0.00 C ATOM 326 N GLN 66 24.415 64.114 17.764 1.00 0.00 N ATOM 327 CA GLN 66 24.395 62.684 18.054 1.00 0.00 C ATOM 328 C GLN 66 25.060 62.384 19.391 1.00 0.00 C ATOM 329 O GLN 66 25.482 63.295 20.104 1.00 0.00 O ATOM 330 CB GLN 66 25.074 61.908 16.936 1.00 0.00 C ATOM 331 N GLU 67 25.148 61.102 19.727 1.00 0.00 N ATOM 332 CA GLU 67 25.889 60.668 20.905 1.00 0.00 C ATOM 333 C GLU 67 27.392 60.708 20.657 1.00 0.00 C ATOM 334 O GLU 67 28.187 60.439 21.557 1.00 0.00 O ATOM 335 CB GLU 67 25.455 59.271 21.321 1.00 0.00 C ATOM 336 N VAL 68 27.775 61.044 19.430 1.00 0.00 N ATOM 337 CA VAL 68 29.182 61.072 19.047 1.00 0.00 C ATOM 338 C VAL 68 29.940 62.148 19.811 1.00 0.00 C ATOM 339 O VAL 68 29.344 63.093 20.328 1.00 0.00 O ATOM 340 CB VAL 68 29.318 61.287 17.547 1.00 0.00 C ATOM 341 N GLY 69 31.259 62.000 19.880 1.00 0.00 N ATOM 342 CA GLY 69 32.102 62.958 20.584 1.00 0.00 C ATOM 343 C GLY 69 33.202 63.496 19.677 1.00 0.00 C ATOM 344 O GLY 69 34.224 62.841 19.470 1.00 0.00 O ATOM 346 N PRO 70 32.985 64.690 19.137 1.00 0.00 N ATOM 347 CA PRO 70 31.763 65.439 19.400 1.00 0.00 C ATOM 348 C PRO 70 30.618 64.950 18.522 1.00 0.00 C ATOM 349 O PRO 70 30.821 64.152 17.607 1.00 0.00 O ATOM 350 CB PRO 70 31.997 66.927 19.188 1.00 0.00 C ATOM 351 N PRO 71 29.413 65.433 18.806 1.00 0.00 N ATOM 352 CA PRO 71 28.225 65.011 18.072 1.00 0.00 C ATOM 353 C PRO 71 28.344 65.346 16.592 1.00 0.00 C ATOM 354 O PRO 71 29.099 66.239 16.205 1.00 0.00 O ATOM 355 CB PRO 71 26.981 65.652 18.665 1.00 0.00 C ATOM 356 N ASP 72 27.595 64.624 15.764 1.00 0.00 N ATOM 357 CA ASP 72 27.498 64.941 14.345 1.00 0.00 C ATOM 358 C ASP 72 26.698 66.217 14.119 1.00 0.00 C ATOM 359 O ASP 72 25.641 66.414 14.718 1.00 0.00 O ATOM 360 CB ASP 72 26.875 63.780 13.585 1.00 0.00 C ATOM 361 N CYS 73 27.208 67.083 13.250 1.00 0.00 N ATOM 362 CA CYS 73 26.572 68.368 12.984 1.00 0.00 C ATOM 363 C CYS 73 25.984 68.412 11.580 1.00 0.00 C ATOM 364 O CYS 73 25.828 67.378 10.930 1.00 0.00 O ATOM 365 CB CYS 73 27.565 69.503 13.182 1.00 0.00 C ATOM 366 N ARG 74 25.662 69.615 11.117 1.00 0.00 N ATOM 367 CA ARG 74 25.010 69.788 9.823 1.00 0.00 C ATOM 368 C ARG 74 25.988 70.309 8.779 1.00 0.00 C ATOM 369 O ARG 74 25.611 70.560 7.633 1.00 0.00 O ATOM 370 CB ARG 74 23.819 70.725 9.953 1.00 0.00 C ATOM 371 N CYS 75 27.244 70.469 9.179 1.00 0.00 N ATOM 372 CA CYS 75 28.174 71.332 8.460 1.00 0.00 C ATOM 373 C CYS 75 28.491 70.772 7.081 1.00 0.00 C ATOM 374 O CYS 75 28.436 69.560 6.865 1.00 0.00 O ATOM 375 CB CYS 75 29.450 71.523 9.264 1.00 0.00 C ATOM 376 N ASP 76 28.824 71.658 6.148 1.00 0.00 N ATOM 377 CA ASP 76 29.186 71.250 4.797 1.00 0.00 C ATOM 378 C ASP 76 30.650 70.837 4.721 1.00 0.00 C ATOM 379 O ASP 76 31.036 70.030 3.874 1.00 0.00 O ATOM 380 CB ASP 76 28.897 72.369 3.809 1.00 0.00 C ATOM 381 N ASN 77 31.465 71.395 5.610 1.00 0.00 N ATOM 382 CA ASN 77 32.863 70.999 5.723 1.00 0.00 C ATOM 383 C ASN 77 33.096 70.142 6.960 1.00 0.00 C ATOM 384 O ASN 77 32.893 70.593 8.087 1.00 0.00 O ATOM 385 CB ASN 77 33.761 72.227 5.750 1.00 0.00 C ATOM 386 N LEU 78 33.522 68.902 6.743 1.00 0.00 N ATOM 387 CA LEU 78 33.743 67.965 7.839 1.00 0.00 C ATOM 388 C LEU 78 34.763 68.508 8.831 1.00 0.00 C ATOM 389 O LEU 78 35.896 68.821 8.463 1.00 0.00 O ATOM 390 CB LEU 78 34.191 66.615 7.299 1.00 0.00 C ATOM 391 N CYS 79 34.354 68.617 10.090 1.00 0.00 N ATOM 392 CA CYS 79 35.227 69.137 11.137 1.00 0.00 C ATOM 393 C CYS 79 36.415 68.212 11.373 1.00 0.00 C ATOM 394 O CYS 79 36.288 66.990 11.286 1.00 0.00 O ATOM 395 CB CYS 79 34.446 69.342 12.425 1.00 0.00 C ATOM 396 N LYS 80 37.566 68.801 11.674 1.00 0.00 N ATOM 397 CA LYS 80 38.773 68.030 11.947 1.00 0.00 C ATOM 398 C LYS 80 38.530 66.994 13.038 1.00 0.00 C ATOM 399 O LYS 80 39.058 65.883 12.981 1.00 0.00 O ATOM 400 CB LYS 80 39.917 68.953 12.335 1.00 0.00 C ATOM 401 N SER 81 37.728 67.364 14.030 1.00 0.00 N ATOM 402 CA SER 81 37.429 66.476 15.146 1.00 0.00 C ATOM 403 C SER 81 38.657 66.255 16.020 1.00 0.00 C ATOM 404 O SER 81 39.084 65.120 16.233 1.00 0.00 O ATOM 405 CB SER 81 36.893 65.147 14.636 1.00 0.00 C ATOM 406 N TYR 82 39.222 67.348 16.523 1.00 0.00 N ATOM 407 CA TYR 82 40.409 67.275 17.366 1.00 0.00 C ATOM 408 C TYR 82 40.272 66.185 18.420 1.00 0.00 C ATOM 409 O TYR 82 39.292 66.145 19.163 1.00 0.00 O ATOM 410 CB TYR 82 40.674 68.621 18.024 1.00 0.00 C ATOM 411 N SER 83 41.261 65.299 18.480 1.00 0.00 N ATOM 412 CA SER 83 41.258 64.212 19.451 1.00 0.00 C ATOM 413 C SER 83 41.138 64.744 20.874 1.00 0.00 C ATOM 414 O SER 83 41.809 65.707 21.246 1.00 0.00 O ATOM 415 CB SER 83 42.514 63.367 19.305 1.00 0.00 C ATOM 416 N SER 84 40.278 64.112 21.666 1.00 0.00 N ATOM 417 CA SER 84 40.064 64.525 23.048 1.00 0.00 C ATOM 418 C SER 84 40.743 63.569 24.020 1.00 0.00 C ATOM 419 O SER 84 40.568 63.674 25.234 1.00 0.00 O ATOM 420 CB SER 84 38.576 64.621 23.347 1.00 0.00 C ATOM 421 N CYS 85 41.518 62.635 23.479 1.00 0.00 N ATOM 422 CA CYS 85 42.214 61.648 24.297 1.00 0.00 C ATOM 423 C CYS 85 43.423 62.261 24.990 1.00 0.00 C ATOM 424 O CYS 85 43.880 63.342 24.622 1.00 0.00 O ATOM 425 CB CYS 85 42.632 60.457 23.449 1.00 0.00 C ATOM 426 N CYS 86 43.940 61.561 25.995 1.00 0.00 N ATOM 427 CA CYS 86 45.129 62.012 26.709 1.00 0.00 C ATOM 428 C CYS 86 46.330 62.104 25.776 1.00 0.00 C ATOM 429 O CYS 86 47.289 62.825 26.053 1.00 0.00 O ATOM 430 CB CYS 86 45.432 61.080 27.874 1.00 0.00 C ATOM 431 N HIS 87 46.270 61.372 24.669 1.00 0.00 N ATOM 432 CA HIS 87 47.360 61.358 23.701 1.00 0.00 C ATOM 433 C HIS 87 47.587 62.741 23.105 1.00 0.00 C ATOM 434 O HIS 87 48.705 63.257 23.117 1.00 0.00 O ATOM 435 CB HIS 87 47.080 60.344 22.602 1.00 0.00 C ATOM 436 N ASP 88 46.520 63.338 22.584 1.00 0.00 N ATOM 437 CA ASP 88 46.601 64.663 21.983 1.00 0.00 C ATOM 438 C ASP 88 47.204 65.672 22.952 1.00 0.00 C ATOM 439 O ASP 88 47.713 66.715 22.541 1.00 0.00 O ATOM 440 CB ASP 88 45.225 65.122 21.525 1.00 0.00 C ATOM 441 N PHE 89 47.143 65.356 24.241 1.00 0.00 N ATOM 442 CA PHE 89 47.683 66.234 25.272 1.00 0.00 C ATOM 443 C PHE 89 49.153 66.545 25.016 1.00 0.00 C ATOM 444 O PHE 89 49.634 67.630 25.344 1.00 0.00 O ATOM 445 CB PHE 89 47.503 65.611 26.648 1.00 0.00 C ATOM 446 N ASP 90 49.861 65.587 24.429 1.00 0.00 N ATOM 447 CA ASP 90 51.278 65.756 24.128 1.00 0.00 C ATOM 448 C ASP 90 51.512 66.979 23.251 1.00 0.00 C ATOM 449 O ASP 90 52.429 67.763 23.495 1.00 0.00 O ATOM 450 CB ASP 90 51.831 64.508 23.458 1.00 0.00 C ATOM 451 N GLU 91 50.677 67.138 22.230 1.00 0.00 N ATOM 452 CA GLU 91 50.854 68.207 21.255 1.00 0.00 C ATOM 453 C GLU 91 50.104 69.465 21.676 1.00 0.00 C ATOM 454 O GLU 91 50.314 70.541 21.114 1.00 0.00 O ATOM 455 CB GLU 91 50.396 67.751 19.878 1.00 0.00 C ATOM 456 N LEU 92 49.231 69.323 22.666 1.00 0.00 N ATOM 457 CA LEU 92 48.486 70.458 23.199 1.00 0.00 C ATOM 458 C LEU 92 49.391 71.376 24.013 1.00 0.00 C ATOM 459 O LEU 92 49.219 72.594 24.010 1.00 0.00 O ATOM 460 CB LEU 92 47.318 69.976 24.044 1.00 0.00 C ATOM 461 N CYS 93 50.354 70.782 24.711 1.00 0.00 N ATOM 462 CA CYS 93 51.313 71.548 25.496 1.00 0.00 C ATOM 463 C CYS 93 52.192 72.413 24.602 1.00 0.00 C ATOM 464 O CYS 93 52.737 73.425 25.042 1.00 0.00 O ATOM 465 CB CYS 93 52.169 70.618 26.343 1.00 0.00 C ATOM 466 N LEU 94 52.327 72.009 23.344 1.00 0.00 N ATOM 467 CA LEU 94 53.159 72.734 22.391 1.00 0.00 C ATOM 468 C LEU 94 52.479 74.017 21.929 1.00 0.00 C ATOM 469 O LEU 94 53.049 74.792 21.163 1.00 0.00 O ATOM 470 CB LEU 94 53.492 71.850 21.198 1.00 0.00 C ATOM 471 N LYS 95 51.255 74.234 22.401 1.00 0.00 N ATOM 472 CA LYS 95 50.502 75.433 22.053 1.00 0.00 C ATOM 473 C LYS 95 49.864 76.059 23.285 1.00 0.00 C ATOM 474 O LYS 95 48.753 76.585 23.221 1.00 0.00 O ATOM 475 CB LYS 95 49.443 75.109 21.011 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 197 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 80.03 46.2 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 78.80 44.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 83.09 50.0 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 25 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.84 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.84 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2711 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 10.49 29 100.0 29 CRMSCA BURIED . . . . . . . . 11.72 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.90 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 10.50 142 100.0 142 CRMSMC BURIED . . . . . . . . 11.86 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.63 37 25.9 143 CRMSSC RELIABLE SIDE CHAINS . 11.63 37 29.6 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.30 26 25.2 103 CRMSSC BURIED . . . . . . . . 12.36 11 27.5 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.90 197 65.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 10.50 142 64.8 219 CRMSALL BURIED . . . . . . . . 11.86 55 65.5 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.351 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 9.978 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 11.334 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.389 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 9.989 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 11.423 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.970 1.000 0.500 37 25.9 143 ERRSC RELIABLE SIDE CHAINS . 10.970 1.000 0.500 37 29.6 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 10.620 1.000 0.500 26 25.2 103 ERRSC BURIED . . . . . . . . 11.797 1.000 0.500 11 27.5 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.389 1.000 0.500 197 65.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 9.989 1.000 0.500 142 64.8 219 ERRALL BURIED . . . . . . . . 11.423 1.000 0.500 55 65.5 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 20 40 40 DISTCA CA (P) 0.00 0.00 0.00 2.50 50.00 40 DISTCA CA (RMS) 0.00 0.00 0.00 4.75 8.18 DISTCA ALL (N) 0 0 0 8 98 197 303 DISTALL ALL (P) 0.00 0.00 0.00 2.64 32.34 303 DISTALL ALL (RMS) 0.00 0.00 0.00 4.39 8.07 DISTALL END of the results output