####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS127_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS127_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 56 - 71 4.95 12.74 LCS_AVERAGE: 36.25 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 65 - 72 1.61 18.35 LCS_AVERAGE: 15.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 65 - 69 0.95 16.90 LONGEST_CONTINUOUS_SEGMENT: 5 82 - 86 0.46 21.40 LCS_AVERAGE: 9.69 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 7 16 0 3 3 4 7 8 9 9 9 10 11 11 12 17 18 21 23 26 28 29 LCS_GDT S 57 S 57 3 7 16 0 3 3 5 7 8 9 9 9 10 12 14 15 17 18 20 20 21 26 29 LCS_GDT C 58 C 58 4 7 16 3 4 6 6 6 8 9 11 12 14 16 17 17 17 18 20 20 24 28 29 LCS_GDT K 59 K 59 4 7 16 3 4 5 6 7 8 9 11 12 14 16 17 17 17 18 20 23 26 28 29 LCS_GDT G 60 G 60 4 7 16 3 4 5 5 7 8 8 10 12 14 16 17 17 17 20 21 23 26 28 29 LCS_GDT R 61 R 61 4 7 16 3 4 5 5 7 8 9 10 12 14 16 17 17 17 20 21 23 26 28 29 LCS_GDT C 62 C 62 4 7 16 3 4 6 6 7 8 9 11 12 14 16 17 17 17 18 20 23 26 28 29 LCS_GDT F 63 F 63 3 7 16 3 3 6 6 7 8 9 11 12 14 16 17 17 17 18 20 23 26 28 29 LCS_GDT E 64 E 64 3 6 16 3 3 6 6 7 8 9 11 12 14 16 17 17 18 20 21 23 26 28 29 LCS_GDT L 65 L 65 5 8 16 3 5 6 6 7 8 9 10 11 13 16 17 17 18 20 21 23 26 28 29 LCS_GDT Q 66 Q 66 5 8 16 3 5 6 6 7 8 9 11 12 14 16 17 17 18 20 21 23 26 28 29 LCS_GDT E 67 E 67 5 8 16 3 5 6 6 7 8 9 11 12 14 16 17 17 18 20 21 23 26 28 29 LCS_GDT V 68 V 68 5 8 16 3 4 6 6 7 8 9 11 12 14 16 17 17 17 18 21 23 26 28 29 LCS_GDT G 69 G 69 5 8 16 1 4 5 6 7 8 9 11 12 14 16 17 17 17 18 20 23 26 28 29 LCS_GDT P 70 P 70 3 8 16 2 5 6 6 7 8 9 11 12 14 16 17 17 17 18 20 23 25 28 29 LCS_GDT P 71 P 71 3 8 16 2 5 6 6 7 8 8 10 12 14 16 17 17 17 18 20 21 23 26 29 LCS_GDT D 72 D 72 4 8 15 0 4 4 5 6 8 8 8 9 10 11 13 15 17 18 19 20 21 24 27 LCS_GDT C 73 C 73 4 5 13 3 4 4 5 5 6 7 8 9 10 11 11 12 13 14 17 20 21 22 26 LCS_GDT R 74 R 74 4 5 13 3 4 4 5 5 6 7 8 9 10 11 11 14 14 15 16 20 21 22 26 LCS_GDT C 75 C 75 4 5 13 3 4 4 5 5 6 7 8 9 10 11 11 14 14 15 16 17 17 19 20 LCS_GDT D 76 D 76 3 5 14 3 3 4 5 5 6 7 8 9 10 11 14 14 15 17 19 20 21 25 27 LCS_GDT N 77 N 77 4 5 14 3 4 5 5 5 6 7 8 9 12 13 14 17 18 20 21 22 26 28 29 LCS_GDT L 78 L 78 4 5 14 3 4 5 5 5 6 7 8 9 12 12 14 17 18 20 21 22 26 28 29 LCS_GDT C 79 C 79 4 5 14 3 4 5 5 5 6 7 8 9 11 12 14 17 18 20 21 23 26 28 29 LCS_GDT K 80 K 80 4 5 14 3 4 5 5 5 6 6 8 9 12 13 14 17 18 20 21 22 26 28 29 LCS_GDT S 81 S 81 3 6 14 3 3 4 4 6 6 7 9 11 13 14 17 17 18 20 21 23 26 28 29 LCS_GDT Y 82 Y 82 5 6 14 4 5 5 5 5 6 7 10 12 14 16 17 17 18 20 21 23 26 28 29 LCS_GDT S 83 S 83 5 6 14 4 5 5 6 7 8 9 11 12 14 16 17 17 18 20 21 23 26 28 29 LCS_GDT S 84 S 84 5 6 14 4 5 5 5 5 6 7 7 8 12 13 14 17 18 20 21 23 26 28 29 LCS_GDT C 85 C 85 5 6 14 4 5 5 5 5 6 7 7 9 11 13 14 17 18 20 21 23 26 28 29 LCS_GDT C 86 C 86 5 6 14 3 5 5 5 5 6 7 7 9 11 13 14 17 18 20 21 23 26 28 29 LCS_GDT H 87 H 87 4 6 14 3 3 4 5 5 6 7 7 10 12 13 14 17 18 20 21 23 26 28 29 LCS_GDT D 88 D 88 4 6 14 3 3 4 5 5 6 7 7 9 12 13 14 17 18 20 21 23 26 28 29 LCS_GDT F 89 F 89 3 6 14 1 3 3 5 5 6 7 7 9 12 13 14 17 18 20 21 23 26 28 29 LCS_GDT D 90 D 90 3 6 14 3 3 5 5 5 6 7 7 9 11 11 13 15 18 20 21 23 26 28 29 LCS_GDT E 91 E 91 3 4 12 3 3 3 3 4 4 5 7 8 9 10 12 13 14 15 17 20 21 22 26 LCS_GDT L 92 L 92 3 4 12 3 3 3 3 4 4 5 7 8 9 10 12 13 14 15 17 20 21 22 26 LCS_GDT C 93 C 93 3 4 12 3 3 3 3 4 4 5 5 7 9 10 12 13 14 15 17 20 21 22 26 LCS_GDT L 94 L 94 3 4 12 3 3 3 3 4 5 5 6 7 8 8 12 13 14 15 17 18 20 21 23 LCS_GDT K 95 K 95 3 4 12 3 3 3 3 4 5 5 6 7 7 10 12 13 14 15 17 18 19 19 21 LCS_AVERAGE LCS_A: 20.44 ( 9.69 15.38 36.25 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 6 6 7 8 9 11 12 14 16 17 17 18 20 21 23 26 28 29 GDT PERCENT_AT 10.00 12.50 15.00 15.00 17.50 20.00 22.50 27.50 30.00 35.00 40.00 42.50 42.50 45.00 50.00 52.50 57.50 65.00 70.00 72.50 GDT RMS_LOCAL 0.29 0.46 0.87 0.87 1.27 1.61 2.17 2.65 3.01 3.48 3.80 4.06 4.06 4.98 5.56 5.88 6.64 6.93 7.25 7.36 GDT RMS_ALL_AT 21.60 21.40 17.43 17.43 18.05 18.35 12.38 12.65 12.57 12.10 12.09 11.88 11.88 12.94 12.27 12.02 11.58 11.41 11.15 11.16 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: D 88 D 88 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 12.253 0 0.610 0.610 12.253 0.119 0.119 LGA S 57 S 57 9.019 0 0.389 0.665 10.409 5.357 4.286 LGA C 58 C 58 3.789 0 0.686 0.664 6.072 53.810 47.063 LGA K 59 K 59 2.820 0 0.621 0.490 12.575 51.190 28.042 LGA G 60 G 60 6.393 0 0.264 0.264 7.254 20.000 20.000 LGA R 61 R 61 6.048 0 0.081 1.092 15.295 22.976 9.307 LGA C 62 C 62 2.361 0 0.127 0.569 5.084 70.952 61.190 LGA F 63 F 63 2.005 0 0.604 0.517 6.454 68.929 45.498 LGA E 64 E 64 0.717 0 0.120 0.980 9.124 66.310 40.000 LGA L 65 L 65 5.826 0 0.059 0.686 12.681 25.238 13.214 LGA Q 66 Q 66 2.815 0 0.374 1.269 4.666 50.119 52.963 LGA E 67 E 67 3.843 0 0.182 1.063 11.018 50.357 25.608 LGA V 68 V 68 2.116 0 0.254 0.937 5.952 71.190 53.537 LGA G 69 G 69 1.946 0 0.572 0.572 3.480 63.214 63.214 LGA P 70 P 70 3.108 0 0.108 0.162 3.856 59.405 57.687 LGA P 71 P 71 6.363 0 0.676 0.621 10.108 14.286 18.435 LGA D 72 D 72 11.167 3 0.700 0.661 14.592 0.714 0.357 LGA C 73 C 73 16.863 0 0.634 0.554 18.823 0.000 0.000 LGA R 74 R 74 16.985 0 0.313 1.219 21.107 0.000 0.000 LGA C 75 C 75 20.507 0 0.642 0.622 23.969 0.000 0.000 LGA D 76 D 76 16.197 0 0.676 1.054 17.677 0.000 0.000 LGA N 77 N 77 17.448 0 0.629 1.361 20.708 0.000 0.000 LGA L 78 L 78 17.434 0 0.099 0.347 21.083 0.000 0.000 LGA C 79 C 79 13.782 0 0.623 0.754 15.046 0.000 0.000 LGA K 80 K 80 14.834 0 0.635 1.432 21.374 0.000 0.000 LGA S 81 S 81 10.124 0 0.599 0.960 12.031 4.286 2.937 LGA Y 82 Y 82 6.202 0 0.480 0.424 16.768 31.190 10.992 LGA S 83 S 83 2.035 0 0.386 0.409 5.044 48.810 45.238 LGA S 84 S 84 8.033 0 0.109 0.536 11.613 8.095 5.476 LGA C 85 C 85 9.171 0 0.134 0.255 9.793 2.381 3.254 LGA C 86 C 86 13.058 0 0.619 0.657 13.802 0.000 0.000 LGA H 87 H 87 16.227 0 0.266 1.057 22.429 0.000 0.000 LGA D 88 D 88 16.721 0 0.652 1.143 17.206 0.000 0.000 LGA F 89 F 89 15.362 0 0.548 1.352 16.993 0.000 0.000 LGA D 90 D 90 15.221 0 0.554 1.148 18.282 0.000 0.000 LGA E 91 E 91 19.473 0 0.512 1.013 25.191 0.000 0.000 LGA L 92 L 92 18.648 0 0.650 1.303 21.479 0.000 0.000 LGA C 93 C 93 18.703 0 0.629 0.960 18.833 0.000 0.000 LGA L 94 L 94 20.426 0 0.452 0.583 22.041 0.000 0.000 LGA K 95 K 95 24.099 0 0.224 0.676 26.165 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 10.200 10.164 11.272 19.723 15.211 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 11 2.65 26.875 24.304 0.400 LGA_LOCAL RMSD: 2.649 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 12.654 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 10.200 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.547456 * X + -0.598275 * Y + -0.585115 * Z + 113.363617 Y_new = -0.771585 * X + -0.631549 * Y + -0.076173 * Z + 185.678574 Z_new = -0.323956 * X + 0.493167 * Y + -0.807365 * Z + 4.934868 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.953709 0.329908 2.593244 [DEG: -54.6435 18.9023 148.5819 ] ZXZ: -1.441340 2.510469 -0.581203 [DEG: -82.5827 143.8393 -33.3005 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS127_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS127_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 11 2.65 24.304 10.20 REMARK ---------------------------------------------------------- MOLECULE T0543TS127_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT 2GSO_A ATOM 78 N GLY 56 27.219 81.539 18.631 1.00 0.00 N ATOM 79 CA GLY 56 26.103 81.509 17.678 1.00 0.00 C ATOM 80 C GLY 56 26.634 81.163 16.305 1.00 0.00 C ATOM 81 O GLY 56 27.784 81.496 15.998 1.00 0.00 O ATOM 82 N SER 57 25.725 81.018 15.365 1.00 0.00 N ATOM 83 CA SER 57 25.955 80.681 13.992 1.00 0.00 C ATOM 84 C SER 57 26.879 79.400 13.878 1.00 0.00 C ATOM 85 O SER 57 27.887 79.513 13.161 1.00 0.00 O ATOM 86 CB SER 57 26.528 81.868 13.232 1.00 0.00 C ATOM 87 OG SER 57 25.816 83.062 13.222 1.00 0.00 O ATOM 88 N CYS 58 26.690 78.321 14.662 1.00 0.00 N ATOM 89 CA CYS 58 27.580 77.134 14.589 1.00 0.00 C ATOM 90 C CYS 58 26.825 75.858 14.299 1.00 0.00 C ATOM 91 O CYS 58 25.598 75.816 14.241 1.00 0.00 O ATOM 92 CB CYS 58 28.358 76.899 15.880 1.00 0.00 C ATOM 93 SG CYS 58 29.309 78.269 16.456 1.00 0.00 S ATOM 94 N LYS 59 27.584 74.790 13.940 1.00 0.00 N ATOM 95 CA LYS 59 27.007 73.444 13.659 1.00 0.00 C ATOM 96 C LYS 59 25.997 73.024 14.789 1.00 0.00 C ATOM 97 O LYS 59 24.940 72.484 14.450 1.00 0.00 O ATOM 98 CB LYS 59 28.173 72.404 13.480 1.00 0.00 C ATOM 99 CG LYS 59 27.584 71.026 13.037 1.00 0.00 C ATOM 100 CD LYS 59 28.765 70.060 13.098 1.00 0.00 C ATOM 101 CE LYS 59 28.346 68.653 12.680 1.00 0.00 C ATOM 102 NZ LYS 59 29.628 67.856 12.442 1.00 0.00 N ATOM 103 N GLY 60 26.398 73.118 16.070 1.00 0.00 N ATOM 104 CA GLY 60 25.592 72.832 17.262 1.00 0.00 C ATOM 105 C GLY 60 24.274 73.640 17.284 1.00 0.00 C ATOM 106 O GLY 60 23.245 73.047 17.637 1.00 0.00 O ATOM 107 N ARG 61 24.386 74.921 17.215 1.00 0.00 N ATOM 108 CA ARG 61 23.166 75.740 17.098 1.00 0.00 C ATOM 109 C ARG 61 22.092 75.170 16.173 1.00 0.00 C ATOM 110 O ARG 61 20.973 75.743 16.181 1.00 0.00 O ATOM 111 CB ARG 61 23.574 76.913 16.418 1.00 0.00 C ATOM 112 CG ARG 61 22.916 78.184 16.532 1.00 0.00 C ATOM 113 CD ARG 61 23.286 79.183 15.410 1.00 0.00 C ATOM 114 NE ARG 61 22.038 79.812 15.056 1.00 0.00 N ATOM 115 CZ ARG 61 21.942 80.930 14.339 1.00 0.00 C ATOM 116 NH1 ARG 61 23.005 81.663 14.039 1.00 0.00 H ATOM 117 NH2 ARG 61 20.742 81.161 13.785 1.00 0.00 H ATOM 118 N CYS 62 22.459 74.484 15.100 1.00 0.00 N ATOM 119 CA CYS 62 21.452 73.986 14.147 1.00 0.00 C ATOM 120 C CYS 62 21.162 72.454 14.264 1.00 0.00 C ATOM 121 O CYS 62 21.980 71.613 13.854 1.00 0.00 O ATOM 122 CB CYS 62 21.862 74.377 12.702 1.00 0.00 C ATOM 123 SG CYS 62 20.526 74.905 11.565 1.00 0.00 S ATOM 124 N PHE 63 20.103 72.128 15.020 1.00 0.00 N ATOM 125 CA PHE 63 19.573 70.792 15.210 1.00 0.00 C ATOM 126 C PHE 63 20.667 69.706 15.588 1.00 0.00 C ATOM 127 O PHE 63 21.223 69.776 16.679 1.00 0.00 O ATOM 128 CB PHE 63 18.770 70.470 13.950 1.00 0.00 C ATOM 129 CG PHE 63 17.583 71.303 13.770 1.00 0.00 C ATOM 130 CD1 PHE 63 16.434 71.056 14.489 1.00 0.00 C ATOM 131 CD2 PHE 63 17.661 72.381 12.915 1.00 0.00 C ATOM 132 CE1 PHE 63 15.348 71.905 14.355 1.00 0.00 C ATOM 133 CE2 PHE 63 16.572 73.218 12.794 1.00 0.00 C ATOM 134 CZ PHE 63 15.417 72.990 13.507 1.00 0.00 C ATOM 135 N GLU 64 20.796 68.637 14.754 1.00 0.00 N ATOM 136 CA GLU 64 21.685 67.494 14.978 1.00 0.00 C ATOM 137 C GLU 64 23.170 67.857 14.848 1.00 0.00 C ATOM 138 O GLU 64 23.628 68.406 13.831 1.00 0.00 O ATOM 139 CB GLU 64 21.342 66.444 13.924 1.00 0.00 C ATOM 140 CG GLU 64 19.938 65.957 14.014 1.00 0.00 C ATOM 141 CD GLU 64 19.536 65.168 12.795 1.00 0.00 C ATOM 142 OE1 GLU 64 20.268 64.204 12.468 1.00 0.00 O ATOM 143 OE2 GLU 64 18.503 65.516 12.169 1.00 0.00 O ATOM 144 N LEU 65 23.874 67.616 15.942 1.00 0.00 N ATOM 145 CA LEU 65 25.296 67.844 16.042 1.00 0.00 C ATOM 146 C LEU 65 26.157 66.543 16.310 1.00 0.00 C ATOM 147 O LEU 65 27.388 66.618 16.080 1.00 0.00 O ATOM 148 CB LEU 65 25.651 68.860 17.098 1.00 0.00 C ATOM 149 CG LEU 65 26.679 69.958 16.921 1.00 0.00 C ATOM 150 CD1 LEU 65 27.345 70.315 18.246 1.00 0.00 C ATOM 151 CD2 LEU 65 27.738 69.495 15.931 1.00 0.00 C ATOM 152 N GLN 66 25.583 65.411 16.601 1.00 0.00 N ATOM 153 CA GLN 66 26.350 64.200 16.952 1.00 0.00 C ATOM 154 C GLN 66 27.385 64.467 18.108 1.00 0.00 C ATOM 155 O GLN 66 28.582 64.371 17.796 1.00 0.00 O ATOM 156 CB GLN 66 26.966 63.618 15.676 1.00 0.00 C ATOM 157 CG GLN 66 26.103 62.730 14.756 1.00 0.00 C ATOM 158 CD GLN 66 24.624 63.031 14.557 1.00 0.00 C ATOM 159 OE1 GLN 66 23.761 62.432 15.225 1.00 0.00 O ATOM 160 NE2 GLN 66 24.327 63.884 13.574 1.00 0.00 N ATOM 161 N GLU 67 27.000 65.057 19.239 1.00 0.00 N ATOM 162 CA GLU 67 27.970 65.209 20.295 1.00 0.00 C ATOM 163 C GLU 67 28.051 63.872 21.080 1.00 0.00 C ATOM 164 O GLU 67 27.508 63.738 22.181 1.00 0.00 O ATOM 165 CB GLU 67 27.581 66.416 21.192 1.00 0.00 C ATOM 166 CG GLU 67 28.741 67.410 21.437 1.00 0.00 C ATOM 167 CD GLU 67 28.114 68.733 21.898 1.00 0.00 C ATOM 168 OE1 GLU 67 27.547 68.853 22.957 1.00 0.00 O ATOM 169 OE2 GLU 67 28.144 69.576 20.988 1.00 0.00 O ATOM 170 N VAL 68 28.673 62.864 20.469 1.00 0.00 N ATOM 171 CA VAL 68 28.939 61.577 21.069 1.00 0.00 C ATOM 172 C VAL 68 30.007 61.845 22.141 1.00 0.00 C ATOM 173 O VAL 68 31.146 62.125 21.731 1.00 0.00 O ATOM 174 CB VAL 68 29.367 60.523 20.102 1.00 0.00 C ATOM 175 CG1 VAL 68 28.316 59.674 19.492 1.00 0.00 C ATOM 176 CG2 VAL 68 30.501 60.900 19.182 1.00 0.00 C ATOM 177 N GLY 69 29.816 61.465 23.402 1.00 0.00 N ATOM 178 CA GLY 69 30.705 61.896 24.394 1.00 0.00 C ATOM 179 C GLY 69 31.735 61.002 25.067 1.00 0.00 C ATOM 180 O GLY 69 32.804 61.590 25.410 1.00 0.00 O ATOM 181 N PRO 70 31.524 59.704 25.533 1.00 0.00 N ATOM 182 CA PRO 70 32.652 59.108 26.171 1.00 0.00 C ATOM 183 C PRO 70 33.825 58.975 25.134 1.00 0.00 C ATOM 184 O PRO 70 33.529 59.163 23.921 1.00 0.00 O ATOM 185 CB PRO 70 32.291 57.684 26.655 1.00 0.00 C ATOM 186 CG PRO 70 30.893 57.434 26.116 1.00 0.00 C ATOM 187 CD PRO 70 30.320 58.780 25.677 1.00 0.00 C ATOM 188 N PRO 71 35.129 58.858 25.485 1.00 0.00 N ATOM 189 CA PRO 71 36.108 58.676 24.418 1.00 0.00 C ATOM 190 C PRO 71 35.953 57.360 23.664 1.00 0.00 C ATOM 191 O PRO 71 34.823 56.834 23.632 1.00 0.00 O ATOM 192 CB PRO 71 37.519 58.752 25.053 1.00 0.00 C ATOM 193 CG PRO 71 37.240 58.538 26.527 1.00 0.00 C ATOM 194 CD PRO 71 35.900 59.232 26.724 1.00 0.00 C ATOM 195 N ASP 72 36.949 56.969 22.821 1.00 0.00 N ATOM 196 CA ASP 72 36.963 55.716 22.010 1.00 0.00 C ATOM 197 C ASP 72 37.044 54.467 22.940 1.00 0.00 C ATOM 198 O ASP 72 37.264 53.337 22.393 1.00 0.00 O ATOM 199 CB ASP 72 38.127 55.793 21.020 1.00 0.00 C ATOM 200 CG ASP 72 39.433 56.267 21.628 1.00 0.00 C ATOM 201 OD1 ASP 72 40.030 57.277 21.093 1.00 0.00 O ATOM 202 OD2 ASP 72 39.936 55.693 22.665 1.00 0.00 O ATOM 203 N CYS 73 37.066 54.665 24.187 1.00 0.00 N ATOM 204 CA CYS 73 37.036 53.627 25.241 1.00 0.00 C ATOM 205 C CYS 73 35.649 52.923 25.506 1.00 0.00 C ATOM 206 O CYS 73 35.597 51.923 26.247 1.00 0.00 O ATOM 207 CB CYS 73 37.417 54.327 26.508 1.00 0.00 C ATOM 208 SG CYS 73 36.201 55.413 27.327 1.00 0.00 S ATOM 209 N ARG 74 34.735 53.165 24.533 1.00 0.00 N ATOM 210 CA ARG 74 33.397 52.632 24.364 1.00 0.00 C ATOM 211 C ARG 74 32.427 52.925 25.521 1.00 0.00 C ATOM 212 O ARG 74 32.126 54.101 25.766 1.00 0.00 O ATOM 213 CB ARG 74 33.548 51.180 24.063 1.00 0.00 C ATOM 214 CG ARG 74 33.588 50.548 22.772 1.00 0.00 C ATOM 215 CD ARG 74 32.530 49.499 22.426 1.00 0.00 C ATOM 216 NE ARG 74 33.097 48.651 21.403 1.00 0.00 N ATOM 217 CZ ARG 74 32.617 47.572 20.802 1.00 0.00 C ATOM 218 NH1 ARG 74 31.409 47.080 21.078 1.00 0.00 H ATOM 219 NH2 ARG 74 33.378 46.925 19.885 1.00 0.00 H ATOM 220 N CYS 75 31.661 51.876 25.822 1.00 0.00 N ATOM 221 CA CYS 75 30.580 51.839 26.793 1.00 0.00 C ATOM 222 C CYS 75 29.559 52.983 26.535 1.00 0.00 C ATOM 223 O CYS 75 29.074 53.048 25.393 1.00 0.00 O ATOM 224 CB CYS 75 31.185 51.833 28.214 1.00 0.00 C ATOM 225 SG CYS 75 31.954 50.320 28.690 1.00 0.00 S ATOM 226 N ASP 76 28.973 53.601 27.570 1.00 0.00 N ATOM 227 CA ASP 76 28.099 54.740 27.327 1.00 0.00 C ATOM 228 C ASP 76 28.634 56.057 27.951 1.00 0.00 C ATOM 229 O ASP 76 28.181 57.120 27.468 1.00 0.00 O ATOM 230 CB ASP 76 26.686 54.367 27.877 1.00 0.00 C ATOM 231 CG ASP 76 25.916 53.423 26.944 1.00 0.00 C ATOM 232 OD1 ASP 76 25.341 53.871 25.957 1.00 0.00 O ATOM 233 OD2 ASP 76 25.909 52.222 27.195 1.00 0.00 O ATOM 234 N ASN 77 29.277 55.999 29.138 1.00 0.00 N ATOM 235 CA ASN 77 29.795 57.173 29.727 1.00 0.00 C ATOM 236 C ASN 77 30.983 56.953 30.692 1.00 0.00 C ATOM 237 O ASN 77 31.080 55.926 31.375 1.00 0.00 O ATOM 238 CB ASN 77 28.650 57.767 30.554 1.00 0.00 C ATOM 239 CG ASN 77 28.010 56.796 31.501 1.00 0.00 C ATOM 240 OD1 ASN 77 28.658 56.214 32.387 1.00 0.00 O ATOM 241 ND2 ASN 77 26.695 56.633 31.328 1.00 0.00 N ATOM 242 N LEU 78 32.049 57.663 30.404 1.00 0.00 N ATOM 243 CA LEU 78 33.266 57.708 31.216 1.00 0.00 C ATOM 244 C LEU 78 33.734 59.154 31.604 1.00 0.00 C ATOM 245 O LEU 78 34.648 59.217 32.437 1.00 0.00 O ATOM 246 CB LEU 78 34.325 56.885 30.555 1.00 0.00 C ATOM 247 CG LEU 78 35.269 56.022 31.295 1.00 0.00 C ATOM 248 CD1 LEU 78 34.462 55.081 32.178 1.00 0.00 C ATOM 249 CD2 LEU 78 36.128 55.194 30.353 1.00 0.00 C ATOM 250 N CYS 79 32.996 60.235 31.299 1.00 0.00 N ATOM 251 CA CYS 79 33.435 61.596 31.565 1.00 0.00 C ATOM 252 C CYS 79 32.601 62.257 32.680 1.00 0.00 C ATOM 253 O CYS 79 31.369 62.116 32.745 1.00 0.00 O ATOM 254 CB CYS 79 33.287 62.411 30.276 1.00 0.00 C ATOM 255 SG CYS 79 33.766 61.560 28.744 1.00 0.00 S ATOM 256 N LYS 80 33.312 63.021 33.513 1.00 0.00 N ATOM 257 CA LYS 80 32.741 63.811 34.595 1.00 0.00 C ATOM 258 C LYS 80 31.624 64.693 33.985 1.00 0.00 C ATOM 259 O LYS 80 31.993 65.579 33.167 1.00 0.00 O ATOM 260 CB LYS 80 33.803 64.662 35.245 1.00 0.00 C ATOM 261 CG LYS 80 34.616 64.155 36.375 1.00 0.00 C ATOM 262 CD LYS 80 35.773 63.201 36.003 1.00 0.00 C ATOM 263 CE LYS 80 36.939 63.855 35.252 1.00 0.00 C ATOM 264 NZ LYS 80 36.676 64.035 33.829 1.00 0.00 N ATOM 265 N SER 81 30.406 64.672 34.499 1.00 0.00 N ATOM 266 CA SER 81 29.406 65.435 33.840 1.00 0.00 C ATOM 267 C SER 81 28.598 66.362 34.693 1.00 0.00 C ATOM 268 O SER 81 27.967 65.895 35.698 1.00 0.00 O ATOM 269 CB SER 81 28.518 64.410 33.141 1.00 0.00 C ATOM 270 OG SER 81 27.582 63.734 33.936 1.00 0.00 O ATOM 271 N TYR 82 29.015 67.597 34.648 1.00 0.00 N ATOM 272 CA TYR 82 28.213 68.585 35.298 1.00 0.00 C ATOM 273 C TYR 82 26.986 68.810 34.386 1.00 0.00 C ATOM 274 O TYR 82 26.053 68.008 34.476 1.00 0.00 O ATOM 275 CB TYR 82 28.964 69.831 35.687 1.00 0.00 C ATOM 276 CG TYR 82 30.160 69.715 36.499 1.00 0.00 C ATOM 277 CD1 TYR 82 31.392 69.401 35.959 1.00 0.00 C ATOM 278 CD2 TYR 82 30.039 69.853 37.834 1.00 0.00 C ATOM 279 CE1 TYR 82 32.497 69.212 36.785 1.00 0.00 C ATOM 280 CE2 TYR 82 31.127 69.667 38.674 1.00 0.00 C ATOM 281 CZ TYR 82 32.343 69.346 38.156 1.00 0.00 C ATOM 282 OH TYR 82 33.434 69.243 39.009 1.00 0.00 H ATOM 283 N SER 83 27.287 69.339 33.167 1.00 0.00 N ATOM 284 CA SER 83 26.273 69.723 32.196 1.00 0.00 C ATOM 285 C SER 83 24.902 70.082 32.911 1.00 0.00 C ATOM 286 O SER 83 24.014 70.512 32.172 1.00 0.00 O ATOM 287 CB SER 83 26.023 68.691 31.137 1.00 0.00 C ATOM 288 OG SER 83 26.715 68.696 29.957 1.00 0.00 O ATOM 289 N SER 84 25.102 70.692 34.091 1.00 0.00 N ATOM 290 CA SER 84 24.089 71.134 35.018 1.00 0.00 C ATOM 291 C SER 84 23.677 72.600 34.706 1.00 0.00 C ATOM 292 O SER 84 22.716 73.081 35.309 1.00 0.00 O ATOM 293 CB SER 84 24.627 71.028 36.450 1.00 0.00 C ATOM 294 OG SER 84 23.899 71.666 37.496 1.00 0.00 O ATOM 295 N CYS 85 24.536 73.312 33.947 1.00 0.00 N ATOM 296 CA CYS 85 24.317 74.629 33.463 1.00 0.00 C ATOM 297 C CYS 85 22.946 74.626 32.769 1.00 0.00 C ATOM 298 O CYS 85 22.682 73.802 31.877 1.00 0.00 O ATOM 299 CB CYS 85 25.409 74.994 32.458 1.00 0.00 C ATOM 300 SG CYS 85 26.868 75.494 33.389 1.00 0.00 S ATOM 301 N CYS 86 22.253 75.727 32.939 1.00 0.00 N ATOM 302 CA CYS 86 20.853 75.907 32.441 1.00 0.00 C ATOM 303 C CYS 86 19.878 74.808 33.014 1.00 0.00 C ATOM 304 O CYS 86 18.830 74.570 32.401 1.00 0.00 O ATOM 305 CB CYS 86 20.836 75.781 30.927 1.00 0.00 C ATOM 306 SG CYS 86 21.245 77.288 30.074 1.00 0.00 S ATOM 307 N HIS 87 20.060 74.368 34.268 1.00 0.00 N ATOM 308 CA HIS 87 19.237 73.373 34.963 1.00 0.00 C ATOM 309 C HIS 87 19.007 72.030 34.159 1.00 0.00 C ATOM 310 O HIS 87 18.055 71.294 34.490 1.00 0.00 O ATOM 311 CB HIS 87 17.885 73.999 35.281 1.00 0.00 C ATOM 312 CG HIS 87 17.966 75.330 35.946 1.00 0.00 C ATOM 313 ND1 HIS 87 18.420 75.628 37.154 1.00 0.00 N ATOM 314 CD2 HIS 87 17.696 76.498 35.280 1.00 0.00 C ATOM 315 CE1 HIS 87 18.450 76.926 37.254 1.00 0.00 C ATOM 316 NE2 HIS 87 18.026 77.437 36.120 1.00 0.00 N ATOM 317 N ASP 88 19.969 71.570 33.390 1.00 0.00 N ATOM 318 CA ASP 88 19.951 70.306 32.650 1.00 0.00 C ATOM 319 C ASP 88 21.224 69.530 33.060 1.00 0.00 C ATOM 320 O ASP 88 22.122 70.130 33.621 1.00 0.00 O ATOM 321 CB ASP 88 19.856 70.338 31.166 1.00 0.00 C ATOM 322 CG ASP 88 19.448 71.341 30.198 1.00 0.00 C ATOM 323 OD1 ASP 88 20.248 71.992 29.468 1.00 0.00 O ATOM 324 OD2 ASP 88 18.204 71.436 29.968 1.00 0.00 O ATOM 325 N PHE 89 21.245 68.198 33.066 1.00 0.00 N ATOM 326 CA PHE 89 22.438 67.442 33.470 1.00 0.00 C ATOM 327 C PHE 89 22.962 66.565 32.340 1.00 0.00 C ATOM 328 O PHE 89 22.216 65.711 31.817 1.00 0.00 O ATOM 329 CB PHE 89 22.020 66.554 34.664 1.00 0.00 C ATOM 330 CG PHE 89 23.057 65.437 34.894 1.00 0.00 C ATOM 331 CD1 PHE 89 23.016 64.267 34.146 1.00 0.00 C ATOM 332 CD2 PHE 89 24.086 65.604 35.807 1.00 0.00 C ATOM 333 CE1 PHE 89 23.965 63.279 34.316 1.00 0.00 C ATOM 334 CE2 PHE 89 25.033 64.611 35.993 1.00 0.00 C ATOM 335 CZ PHE 89 24.965 63.441 35.248 1.00 0.00 C ATOM 336 N ASP 90 24.210 66.733 31.979 1.00 0.00 N ATOM 337 CA ASP 90 24.871 66.000 30.857 1.00 0.00 C ATOM 338 C ASP 90 26.424 65.917 31.068 1.00 0.00 C ATOM 339 O ASP 90 26.930 66.307 32.108 1.00 0.00 O ATOM 340 CB ASP 90 24.409 66.660 29.532 1.00 0.00 C ATOM 341 CG ASP 90 24.731 65.820 28.305 1.00 0.00 C ATOM 342 OD1 ASP 90 24.987 64.618 28.422 1.00 0.00 O ATOM 343 OD2 ASP 90 24.688 66.369 27.201 1.00 0.00 O ATOM 344 N GLU 91 27.109 65.257 30.117 1.00 0.00 N ATOM 345 CA GLU 91 28.554 65.034 30.135 1.00 0.00 C ATOM 346 C GLU 91 29.322 66.280 29.594 1.00 0.00 C ATOM 347 O GLU 91 28.804 66.998 28.726 1.00 0.00 O ATOM 348 CB GLU 91 28.784 63.826 29.218 1.00 0.00 C ATOM 349 CG GLU 91 28.397 62.479 29.792 1.00 0.00 C ATOM 350 CD GLU 91 28.630 61.334 28.841 1.00 0.00 C ATOM 351 OE1 GLU 91 29.226 61.452 27.783 1.00 0.00 O ATOM 352 OE2 GLU 91 28.084 60.225 29.275 1.00 0.00 O ATOM 353 N LEU 92 30.571 66.466 29.981 1.00 0.00 N ATOM 354 CA LEU 92 31.439 67.553 29.474 1.00 0.00 C ATOM 355 C LEU 92 32.731 67.002 28.818 1.00 0.00 C ATOM 356 O LEU 92 33.510 66.333 29.517 1.00 0.00 O ATOM 357 CB LEU 92 31.896 68.401 30.663 1.00 0.00 C ATOM 358 CG LEU 92 31.074 69.644 30.984 1.00 0.00 C ATOM 359 CD1 LEU 92 29.591 69.527 30.678 1.00 0.00 C ATOM 360 CD2 LEU 92 31.305 70.077 32.433 1.00 0.00 C ATOM 361 N CYS 93 33.042 67.432 27.593 1.00 0.00 N ATOM 362 CA CYS 93 34.233 66.990 26.838 1.00 0.00 C ATOM 363 C CYS 93 34.468 67.871 25.584 1.00 0.00 C ATOM 364 O CYS 93 33.527 68.395 24.967 1.00 0.00 O ATOM 365 CB CYS 93 34.055 65.512 26.418 1.00 0.00 C ATOM 366 SG CYS 93 32.375 65.016 26.033 1.00 0.00 S ATOM 367 N LEU 94 35.713 67.942 25.143 1.00 0.00 N ATOM 368 CA LEU 94 36.137 68.704 23.970 1.00 0.00 C ATOM 369 C LEU 94 35.808 67.978 22.615 1.00 0.00 C ATOM 370 O LEU 94 35.200 68.591 21.741 1.00 0.00 O ATOM 371 CB LEU 94 37.650 68.962 24.130 1.00 0.00 C ATOM 372 CG LEU 94 38.120 69.929 25.223 1.00 0.00 C ATOM 373 CD1 LEU 94 39.639 69.854 25.322 1.00 0.00 C ATOM 374 CD2 LEU 94 37.706 71.343 24.918 1.00 0.00 C ATOM 375 N LYS 95 36.241 66.718 22.472 1.00 0.00 N ATOM 376 CA LYS 95 36.033 65.909 21.300 1.00 0.00 C ATOM 377 C LYS 95 35.498 64.502 21.700 1.00 0.00 C ATOM 378 O LYS 95 35.010 64.274 22.825 1.00 0.00 O ATOM 379 CB LYS 95 37.384 65.894 20.581 1.00 0.00 C ATOM 380 CG LYS 95 37.831 67.000 19.633 1.00 0.00 C ATOM 381 CD LYS 95 36.826 67.243 18.516 1.00 0.00 C ATOM 382 CE LYS 95 36.776 68.749 18.053 1.00 0.00 C ATOM 383 NZ LYS 95 38.236 69.174 17.932 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 99.82 29.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 93.74 32.1 56 100.0 56 ARMSMC BURIED . . . . . . . . 113.84 22.7 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.54 38.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 77.50 40.0 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 76.63 40.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 79.58 36.4 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.21 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 61.42 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 68.33 50.0 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 52.42 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 104.49 11.1 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 96.65 12.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 98.62 14.3 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 122.87 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 96.14 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 96.14 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 107.48 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 0.96 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 10.20 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 10.20 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2550 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 10.18 29 100.0 29 CRMSCA BURIED . . . . . . . . 10.25 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 10.32 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 10.40 142 100.0 142 CRMSMC BURIED . . . . . . . . 10.09 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 12.39 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 12.26 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 13.01 103 100.0 103 CRMSSC BURIED . . . . . . . . 10.65 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.27 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 11.62 219 100.0 219 CRMSALL BURIED . . . . . . . . 10.32 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.435 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 9.334 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 9.701 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.546 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 9.558 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 9.515 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.668 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 11.562 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 12.253 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 10.163 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.468 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 10.731 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 9.783 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 4 25 40 40 DISTCA CA (P) 0.00 2.50 2.50 10.00 62.50 40 DISTCA CA (RMS) 0.00 1.34 1.34 4.13 7.29 DISTCA ALL (N) 0 1 4 19 150 303 303 DISTALL ALL (P) 0.00 0.33 1.32 6.27 49.50 303 DISTALL ALL (RMS) 0.00 1.34 2.34 3.82 7.32 DISTALL END of the results output