####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS114_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS114_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 112 - 139 4.97 11.24 LONGEST_CONTINUOUS_SEGMENT: 28 113 - 140 4.74 11.22 LCS_AVERAGE: 56.05 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 17 116 - 132 1.97 10.77 LONGEST_CONTINUOUS_SEGMENT: 17 117 - 133 1.86 10.51 LCS_AVERAGE: 23.51 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 122 - 132 0.96 9.87 LCS_AVERAGE: 12.99 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 4 5 20 0 4 4 5 7 8 10 13 14 16 17 17 17 17 23 24 27 29 31 32 LCS_GDT A 97 A 97 4 5 20 3 4 4 5 6 7 12 13 14 16 17 17 17 21 23 24 27 29 31 32 LCS_GDT R 98 R 98 4 5 20 3 4 4 5 7 10 12 13 14 16 17 17 17 21 23 24 27 29 31 32 LCS_GDT G 99 G 99 4 5 20 3 4 5 8 10 10 12 13 14 16 17 17 17 18 19 22 27 29 31 32 LCS_GDT W 100 W 100 3 5 20 3 3 4 5 6 10 11 12 14 16 17 17 17 18 19 22 24 26 27 32 LCS_GDT E 101 E 101 3 5 20 3 3 6 7 10 10 12 13 14 16 17 17 17 18 19 22 22 23 24 26 LCS_GDT C 102 C 102 3 5 20 3 3 3 6 10 10 12 13 14 16 17 17 17 18 20 22 22 24 27 28 LCS_GDT T 103 T 103 4 5 20 3 4 5 8 10 10 12 13 14 16 17 17 18 19 21 23 27 29 31 32 LCS_GDT K 104 K 104 4 6 20 3 4 4 5 5 7 10 13 14 16 17 17 17 17 19 22 23 28 31 32 LCS_GDT D 105 D 105 4 6 20 3 4 4 6 7 10 12 13 14 16 17 17 18 21 23 24 27 29 31 32 LCS_GDT R 106 R 106 4 7 20 3 4 6 8 10 14 15 17 18 19 20 23 23 26 27 28 29 30 31 32 LCS_GDT C 107 C 107 4 7 20 3 4 6 8 10 10 12 13 14 16 17 19 21 22 25 26 27 28 30 32 LCS_GDT G 108 G 108 4 7 20 3 4 6 8 10 10 12 13 14 16 17 17 17 17 22 24 26 28 29 31 LCS_GDT E 109 E 109 4 7 20 3 4 6 8 10 10 12 13 14 16 17 17 19 22 24 26 27 30 31 32 LCS_GDT V 110 V 110 4 7 20 3 3 4 4 7 9 12 13 14 16 17 19 21 23 25 28 29 30 31 32 LCS_GDT R 111 R 111 4 7 23 3 3 6 8 10 10 12 13 14 16 17 17 17 22 22 24 26 28 30 32 LCS_GDT N 112 N 112 4 7 28 3 3 6 8 10 10 11 13 14 16 19 21 25 26 27 28 29 30 31 32 LCS_GDT E 113 E 113 4 6 28 3 3 4 5 7 9 11 12 13 13 16 17 19 22 23 26 29 30 31 32 LCS_GDT E 114 E 114 4 6 28 3 4 4 5 5 8 10 15 19 21 24 25 25 26 27 28 29 30 31 32 LCS_GDT N 115 N 115 4 6 28 3 4 4 5 9 13 18 20 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT A 116 A 116 4 17 28 3 5 7 12 13 17 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT C 117 C 117 4 17 28 3 5 8 12 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT H 118 H 118 4 17 28 3 4 5 12 13 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT C 119 C 119 5 17 28 4 8 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT S 120 S 120 5 17 28 4 8 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT E 121 E 121 10 17 28 4 8 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT D 122 D 122 11 17 28 6 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT C 123 C 123 11 17 28 6 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT L 124 L 124 11 17 28 4 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT S 125 S 125 11 17 28 4 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT R 126 R 126 11 17 28 3 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT G 127 G 127 11 17 28 6 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT D 128 D 128 11 17 28 6 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT C 129 C 129 11 17 28 6 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT C 130 C 130 11 17 28 4 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT T 131 T 131 11 17 28 4 5 10 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT N 132 N 132 11 17 28 6 8 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT Y 133 Y 133 6 17 28 5 5 7 11 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT Q 134 Q 134 5 9 28 5 5 6 8 13 14 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT V 135 V 135 5 9 28 5 5 6 8 11 14 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT V 136 V 136 5 9 28 5 5 6 8 9 12 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT C 137 C 137 3 9 28 3 3 4 5 8 10 12 13 17 18 22 23 24 24 25 26 27 27 28 30 LCS_GDT K 138 K 138 3 5 28 3 3 4 4 9 11 17 22 23 24 24 25 25 26 26 27 28 30 31 32 LCS_GDT G 139 G 139 3 5 28 3 3 4 4 12 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 LCS_GDT E 140 E 140 3 5 28 3 8 13 15 16 18 19 20 20 21 23 25 25 26 27 28 29 30 31 32 LCS_AVERAGE LCS_A: 30.85 ( 12.99 23.51 56.05 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 13 15 16 18 19 22 23 24 24 25 25 26 27 28 29 30 31 32 GDT PERCENT_AT 13.33 20.00 28.89 33.33 35.56 40.00 42.22 48.89 51.11 53.33 53.33 55.56 55.56 57.78 60.00 62.22 64.44 66.67 68.89 71.11 GDT RMS_LOCAL 0.28 0.73 1.01 1.23 1.50 1.85 2.05 2.93 2.96 3.20 3.20 3.69 3.46 3.86 4.49 4.93 5.21 5.35 5.64 6.02 GDT RMS_ALL_AT 9.90 9.93 10.14 10.12 10.32 10.45 10.72 11.65 11.56 11.23 11.23 11.15 10.99 10.96 10.46 10.40 10.61 10.68 10.61 10.55 # Checking swapping # possible swapping detected: D 105 D 105 # possible swapping detected: E 113 E 113 # possible swapping detected: E 121 E 121 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 18.410 0 0.245 0.336 20.805 0.000 0.000 LGA A 97 A 97 19.215 0 0.540 0.542 19.891 0.000 0.000 LGA R 98 R 98 18.927 0 0.495 1.361 28.833 0.000 0.000 LGA G 99 G 99 17.341 0 0.233 0.233 17.341 0.000 0.000 LGA W 100 W 100 15.042 0 0.508 1.319 17.888 0.000 0.544 LGA E 101 E 101 18.147 0 0.169 0.367 22.726 0.000 0.000 LGA C 102 C 102 17.589 0 0.353 0.435 18.789 0.000 0.000 LGA T 103 T 103 15.856 0 0.366 1.106 15.959 0.000 0.000 LGA K 104 K 104 16.979 0 0.119 1.249 23.328 0.000 0.000 LGA D 105 D 105 16.103 0 0.729 0.866 17.445 0.000 0.000 LGA R 106 R 106 11.743 0 0.607 1.509 14.716 0.000 20.996 LGA C 107 C 107 17.613 0 0.051 0.097 19.467 0.000 0.000 LGA G 108 G 108 20.453 0 0.253 0.253 21.931 0.000 0.000 LGA E 109 E 109 18.601 0 0.305 0.478 18.699 0.000 0.000 LGA V 110 V 110 18.944 0 0.631 0.958 19.385 0.000 0.000 LGA R 111 R 111 19.504 0 0.074 1.178 24.563 0.000 0.000 LGA N 112 N 112 16.682 0 0.278 1.080 17.636 0.000 0.000 LGA E 113 E 113 16.991 0 0.187 1.312 22.067 0.000 0.000 LGA E 114 E 114 12.485 0 0.700 1.058 18.276 1.905 0.847 LGA N 115 N 115 7.597 0 0.137 0.215 13.051 10.595 5.655 LGA A 116 A 116 3.149 0 0.602 0.592 3.811 48.452 48.762 LGA C 117 C 117 1.814 0 0.155 0.731 3.617 72.857 69.365 LGA H 118 H 118 3.008 0 0.137 1.226 8.495 47.143 30.857 LGA C 119 C 119 3.000 0 0.549 0.887 5.649 54.048 47.937 LGA S 120 S 120 2.486 0 0.158 0.755 3.031 60.952 59.762 LGA E 121 E 121 3.914 0 0.168 1.049 10.410 46.667 25.608 LGA D 122 D 122 3.255 0 0.251 1.071 5.979 59.405 43.750 LGA C 123 C 123 1.525 0 0.058 0.767 5.034 77.381 68.095 LGA L 124 L 124 2.780 0 0.062 1.403 6.923 57.619 44.405 LGA S 125 S 125 2.196 0 0.200 0.552 4.295 57.976 60.556 LGA R 126 R 126 2.883 0 0.177 0.583 4.857 50.833 45.195 LGA G 127 G 127 2.899 0 0.335 0.335 3.989 53.810 53.810 LGA D 128 D 128 3.028 0 0.391 1.330 7.441 57.262 38.690 LGA C 129 C 129 0.589 0 0.150 0.500 2.155 90.833 88.016 LGA C 130 C 130 1.115 0 0.081 0.728 2.535 85.952 78.968 LGA T 131 T 131 2.905 0 0.115 1.125 5.271 59.048 50.952 LGA N 132 N 132 3.276 0 0.271 0.988 4.575 63.571 54.464 LGA Y 133 Y 133 1.004 0 0.062 1.277 3.956 71.071 67.381 LGA Q 134 Q 134 4.176 0 0.057 0.917 9.041 40.119 24.868 LGA V 135 V 135 3.909 0 0.055 1.031 5.382 37.500 45.986 LGA V 136 V 136 4.480 0 0.621 0.846 7.587 27.857 25.918 LGA C 137 C 137 8.210 0 0.198 0.718 11.732 10.357 6.905 LGA K 138 K 138 3.932 0 0.716 1.422 12.592 42.500 22.698 LGA G 139 G 139 3.075 0 0.402 0.402 6.720 36.667 36.667 LGA E 140 E 140 8.779 0 0.148 1.115 14.717 6.548 2.910 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 9.375 9.239 10.596 29.532 26.013 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 22 2.93 41.111 37.953 0.727 LGA_LOCAL RMSD: 2.925 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 11.654 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 9.375 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.431214 * X + 0.902244 * Y + -0.003314 * Z + 35.941925 Y_new = -0.056204 * X + -0.023196 * Y + 0.998150 * Z + 81.215874 Z_new = 0.900497 * X + 0.430602 * Y + 0.060712 * Z + 11.551959 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.011985 -1.120912 1.430727 [DEG: -172.5741 -64.2235 81.9746 ] ZXZ: -3.138273 1.510047 1.124754 [DEG: -179.8098 86.5193 64.4437 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS114_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS114_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 22 2.93 37.953 9.38 REMARK ---------------------------------------------------------- MOLECULE T0543TS114_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 728 N THR 96 27.734 71.157 12.330 1.00 30.00 N ATOM 729 CA THR 96 26.625 71.821 11.704 1.00 30.00 C ATOM 730 C THR 96 25.310 71.267 12.203 1.00 30.00 C ATOM 731 O THR 96 24.318 71.231 11.473 1.00 30.00 O ATOM 732 CB THR 96 26.699 71.695 10.200 1.00 30.00 C ATOM 733 OG1 THR 96 27.981 72.121 9.761 1.00 30.00 O ATOM 734 CG2 THR 96 25.647 72.608 9.538 1.00 30.00 C ATOM 735 N ALA 97 25.263 70.706 13.428 1.00 30.00 N ATOM 736 CA ALA 97 23.970 70.406 13.973 1.00 30.00 C ATOM 737 C ALA 97 23.407 71.687 14.505 1.00 30.00 C ATOM 738 O ALA 97 22.312 72.129 14.162 1.00 30.00 O ATOM 739 CB ALA 97 24.034 69.406 15.140 1.00 30.00 C ATOM 740 N ARG 98 24.232 72.361 15.328 1.00 30.00 N ATOM 741 CA ARG 98 23.832 73.548 16.005 1.00 30.00 C ATOM 742 C ARG 98 24.627 74.667 15.417 1.00 30.00 C ATOM 743 O ARG 98 25.800 74.857 15.738 1.00 30.00 O ATOM 744 CB ARG 98 24.167 73.451 17.503 1.00 30.00 C ATOM 745 CG ARG 98 23.352 72.371 18.224 1.00 30.00 C ATOM 746 CD ARG 98 24.134 71.589 19.283 1.00 30.00 C ATOM 747 NE ARG 98 24.966 70.593 18.549 1.00 30.00 N ATOM 748 CZ ARG 98 26.171 70.179 19.041 1.00 30.00 C ATOM 749 NH1 ARG 98 26.660 70.688 20.209 1.00 30.00 H ATOM 750 NH2 ARG 98 26.893 69.250 18.351 1.00 30.00 H ATOM 751 N GLY 99 23.985 75.476 14.559 1.00 30.00 N ATOM 752 CA GLY 99 24.760 76.489 13.906 1.00 30.00 C ATOM 753 C GLY 99 23.867 77.655 13.659 1.00 30.00 C ATOM 754 O GLY 99 22.739 77.494 13.195 1.00 30.00 O ATOM 755 N TRP 100 24.369 78.869 13.955 1.00 30.00 N ATOM 756 CA TRP 100 23.610 80.064 13.753 1.00 30.00 C ATOM 757 C TRP 100 24.257 80.711 12.570 1.00 30.00 C ATOM 758 O TRP 100 25.328 81.299 12.699 1.00 30.00 O ATOM 759 CB TRP 100 23.838 81.037 14.914 1.00 30.00 C ATOM 760 CG TRP 100 22.911 82.165 15.269 1.00 30.00 C ATOM 761 CD1 TRP 100 22.626 83.358 14.674 1.00 30.00 C ATOM 762 CD2 TRP 100 22.263 82.177 16.547 1.00 30.00 C ATOM 763 NE1 TRP 100 21.826 84.111 15.505 1.00 30.00 N ATOM 764 CE2 TRP 100 21.601 83.394 16.664 1.00 30.00 C ATOM 765 CE3 TRP 100 22.247 81.251 17.549 1.00 30.00 C ATOM 766 CZ2 TRP 100 20.904 83.705 17.796 1.00 30.00 C ATOM 767 CZ3 TRP 100 21.525 81.554 18.680 1.00 30.00 C ATOM 768 CH2 TRP 100 20.866 82.759 18.799 1.00 30.00 H ATOM 769 N GLU 101 23.619 80.668 11.389 1.00 30.00 N ATOM 770 CA GLU 101 24.312 81.169 10.239 1.00 30.00 C ATOM 771 C GLU 101 24.103 82.643 10.142 1.00 30.00 C ATOM 772 O GLU 101 23.075 83.102 9.645 1.00 30.00 O ATOM 773 CB GLU 101 23.790 80.561 8.932 1.00 30.00 C ATOM 774 CG GLU 101 23.975 79.048 8.838 1.00 30.00 C ATOM 775 CD GLU 101 23.229 78.599 7.591 1.00 30.00 C ATOM 776 OE1 GLU 101 23.303 79.325 6.562 1.00 30.00 O ATOM 777 OE2 GLU 101 22.565 77.532 7.654 1.00 30.00 O ATOM 778 N CYS 102 25.102 83.431 10.588 1.00 30.00 N ATOM 779 CA CYS 102 24.992 84.857 10.484 1.00 30.00 C ATOM 780 C CYS 102 23.808 85.307 11.276 1.00 30.00 C ATOM 781 O CYS 102 23.822 85.254 12.506 1.00 30.00 O ATOM 782 CB CYS 102 24.814 85.353 9.039 1.00 30.00 C ATOM 783 SG CYS 102 26.287 85.057 8.019 1.00 30.00 S ATOM 784 N THR 103 22.771 85.821 10.579 1.00 30.00 N ATOM 785 CA THR 103 21.586 86.266 11.257 1.00 30.00 C ATOM 786 C THR 103 20.451 85.344 10.917 1.00 30.00 C ATOM 787 O THR 103 19.563 85.698 10.137 1.00 30.00 O ATOM 788 CB THR 103 21.159 87.648 10.852 1.00 30.00 C ATOM 789 OG1 THR 103 22.193 88.583 11.127 1.00 30.00 O ATOM 790 CG2 THR 103 19.888 88.020 11.633 1.00 30.00 C ATOM 791 N LYS 104 20.503 84.090 11.416 1.00 30.00 N ATOM 792 CA LYS 104 19.387 83.202 11.260 1.00 30.00 C ATOM 793 C LYS 104 18.329 83.558 12.259 1.00 30.00 C ATOM 794 O LYS 104 17.206 83.913 11.911 1.00 30.00 O ATOM 795 CB LYS 104 19.772 81.731 11.490 1.00 30.00 C ATOM 796 CG LYS 104 18.722 80.731 11.004 1.00 30.00 C ATOM 797 CD LYS 104 18.614 80.665 9.478 1.00 30.00 C ATOM 798 CE LYS 104 19.914 80.247 8.787 1.00 30.00 C ATOM 799 NZ LYS 104 20.263 78.860 9.164 1.00 30.00 N ATOM 800 N ASP 105 18.701 83.503 13.555 1.00 30.00 N ATOM 801 CA ASP 105 17.846 83.872 14.647 1.00 30.00 C ATOM 802 C ASP 105 18.264 85.272 14.868 1.00 30.00 C ATOM 803 O ASP 105 19.461 85.549 14.922 1.00 30.00 O ATOM 804 CB ASP 105 18.123 83.086 15.941 1.00 30.00 C ATOM 805 CG ASP 105 17.752 81.634 15.679 1.00 30.00 C ATOM 806 OD1 ASP 105 17.024 81.387 14.682 1.00 30.00 O ATOM 807 OD2 ASP 105 18.198 80.751 16.461 1.00 30.00 O ATOM 808 N ARG 106 17.292 86.184 15.020 1.00 30.00 N ATOM 809 CA ARG 106 17.608 87.575 14.971 1.00 30.00 C ATOM 810 C ARG 106 18.647 87.956 15.966 1.00 30.00 C ATOM 811 O ARG 106 18.529 87.695 17.164 1.00 30.00 O ATOM 812 CB ARG 106 16.394 88.485 15.211 1.00 30.00 C ATOM 813 CG ARG 106 15.266 88.241 14.212 1.00 30.00 C ATOM 814 CD ARG 106 15.366 89.044 12.913 1.00 30.00 C ATOM 815 NE ARG 106 14.203 88.628 12.078 1.00 30.00 N ATOM 816 CZ ARG 106 13.713 89.418 11.078 1.00 30.00 C ATOM 817 NH1 ARG 106 14.305 90.612 10.781 1.00 30.00 H ATOM 818 NH2 ARG 106 12.615 89.008 10.377 1.00 30.00 H ATOM 819 N CYS 107 19.701 88.620 15.449 1.00 30.00 N ATOM 820 CA CYS 107 20.756 89.150 16.258 1.00 30.00 C ATOM 821 C CYS 107 20.126 90.246 17.046 1.00 30.00 C ATOM 822 O CYS 107 19.421 91.089 16.491 1.00 30.00 O ATOM 823 CB CYS 107 21.909 89.745 15.432 1.00 30.00 C ATOM 824 SG CYS 107 22.756 88.482 14.434 1.00 30.00 S ATOM 825 N GLY 108 20.407 90.288 18.362 1.00 30.00 N ATOM 826 CA GLY 108 19.753 91.238 19.211 1.00 30.00 C ATOM 827 C GLY 108 19.097 90.486 20.336 1.00 30.00 C ATOM 828 O GLY 108 19.172 90.925 21.482 1.00 30.00 O ATOM 829 N GLU 109 18.430 89.342 20.065 1.00 30.00 N ATOM 830 CA GLU 109 17.911 88.584 21.174 1.00 30.00 C ATOM 831 C GLU 109 18.379 87.169 21.010 1.00 30.00 C ATOM 832 O GLU 109 17.668 86.300 20.509 1.00 30.00 O ATOM 833 CB GLU 109 16.376 88.596 21.279 1.00 30.00 C ATOM 834 CG GLU 109 15.652 88.108 20.027 1.00 30.00 C ATOM 835 CD GLU 109 14.171 88.001 20.372 1.00 30.00 C ATOM 836 OE1 GLU 109 13.837 88.066 21.585 1.00 30.00 O ATOM 837 OE2 GLU 109 13.355 87.846 19.425 1.00 30.00 O ATOM 838 N VAL 110 19.631 86.927 21.431 1.00 30.00 N ATOM 839 CA VAL 110 20.280 85.665 21.279 1.00 30.00 C ATOM 840 C VAL 110 19.796 84.639 22.267 1.00 30.00 C ATOM 841 O VAL 110 19.663 83.467 21.917 1.00 30.00 O ATOM 842 CB VAL 110 21.775 85.780 21.375 1.00 30.00 C ATOM 843 CG1 VAL 110 22.389 84.385 21.200 1.00 30.00 C ATOM 844 CG2 VAL 110 22.257 86.799 20.329 1.00 30.00 C ATOM 845 N ARG 111 19.540 85.041 23.535 1.00 30.00 N ATOM 846 CA ARG 111 19.096 84.092 24.519 1.00 30.00 C ATOM 847 C ARG 111 17.802 83.564 24.011 1.00 30.00 C ATOM 848 O ARG 111 16.966 84.333 23.549 1.00 30.00 O ATOM 849 CB ARG 111 18.832 84.697 25.900 1.00 30.00 C ATOM 850 CG ARG 111 18.348 83.696 26.951 1.00 30.00 C ATOM 851 CD ARG 111 18.102 84.363 28.301 1.00 30.00 C ATOM 852 NE ARG 111 17.837 85.798 28.004 1.00 30.00 N ATOM 853 CZ ARG 111 17.360 86.631 28.973 1.00 30.00 C ATOM 854 NH1 ARG 111 17.038 86.137 30.203 1.00 30.00 H ATOM 855 NH2 ARG 111 17.203 87.959 28.703 1.00 30.00 H ATOM 856 N ASN 112 17.583 82.239 24.120 1.00 30.00 N ATOM 857 CA ASN 112 16.451 81.669 23.449 1.00 30.00 C ATOM 858 C ASN 112 15.193 81.872 24.220 1.00 30.00 C ATOM 859 O ASN 112 14.584 80.909 24.685 1.00 30.00 O ATOM 860 CB ASN 112 16.617 80.153 23.263 1.00 30.00 C ATOM 861 CG ASN 112 17.958 79.920 22.575 1.00 30.00 C ATOM 862 OD1 ASN 112 18.993 79.845 23.236 1.00 30.00 O ATOM 863 ND2 ASN 112 17.948 79.801 21.221 1.00 30.00 N ATOM 864 N GLU 113 14.772 83.137 24.396 1.00 30.00 N ATOM 865 CA GLU 113 13.488 83.362 24.991 1.00 30.00 C ATOM 866 C GLU 113 12.475 82.965 23.963 1.00 30.00 C ATOM 867 O GLU 113 11.550 82.199 24.228 1.00 30.00 O ATOM 868 CB GLU 113 13.267 84.838 25.360 1.00 30.00 C ATOM 869 CG GLU 113 14.187 85.305 26.491 1.00 30.00 C ATOM 870 CD GLU 113 13.999 86.803 26.695 1.00 30.00 C ATOM 871 OE1 GLU 113 13.171 87.401 25.959 1.00 30.00 O ATOM 872 OE2 GLU 113 14.681 87.369 27.590 1.00 30.00 O ATOM 873 N GLU 114 12.668 83.483 22.734 1.00 30.00 N ATOM 874 CA GLU 114 11.864 83.176 21.589 1.00 30.00 C ATOM 875 C GLU 114 12.847 83.161 20.464 1.00 30.00 C ATOM 876 O GLU 114 13.752 83.993 20.422 1.00 30.00 O ATOM 877 CB GLU 114 10.815 84.256 21.263 1.00 30.00 C ATOM 878 CG GLU 114 9.928 83.907 20.065 1.00 30.00 C ATOM 879 CD GLU 114 8.921 82.858 20.512 1.00 30.00 C ATOM 880 OE1 GLU 114 7.914 83.239 21.167 1.00 30.00 O ATOM 881 OE2 GLU 114 9.151 81.659 20.205 1.00 30.00 O ATOM 882 N ASN 115 12.723 82.215 19.518 1.00 30.00 N ATOM 883 CA ASN 115 13.712 82.222 18.481 1.00 30.00 C ATOM 884 C ASN 115 13.144 82.967 17.315 1.00 30.00 C ATOM 885 O ASN 115 12.179 82.526 16.693 1.00 30.00 O ATOM 886 CB ASN 115 14.107 80.823 17.973 1.00 30.00 C ATOM 887 CG ASN 115 15.019 80.169 19.002 1.00 30.00 C ATOM 888 OD1 ASN 115 15.909 80.808 19.562 1.00 30.00 O ATOM 889 ND2 ASN 115 14.799 78.851 19.252 1.00 30.00 N ATOM 890 N ALA 116 13.746 84.123 16.972 1.00 30.00 N ATOM 891 CA ALA 116 13.231 84.893 15.878 1.00 30.00 C ATOM 892 C ALA 116 13.951 84.457 14.643 1.00 30.00 C ATOM 893 O ALA 116 15.170 84.582 14.542 1.00 30.00 O ATOM 894 CB ALA 116 13.448 86.408 16.042 1.00 30.00 C ATOM 895 N CYS 117 13.208 83.958 13.637 1.00 30.00 N ATOM 896 CA CYS 117 13.895 83.430 12.499 1.00 30.00 C ATOM 897 C CYS 117 13.818 84.364 11.339 1.00 30.00 C ATOM 898 O CYS 117 12.756 84.875 10.988 1.00 30.00 O ATOM 899 CB CYS 117 13.327 82.086 12.015 1.00 30.00 C ATOM 900 SG CYS 117 14.216 81.438 10.568 1.00 30.00 S ATOM 901 N HIS 118 14.987 84.596 10.719 1.00 30.00 N ATOM 902 CA HIS 118 15.118 85.370 9.522 1.00 30.00 C ATOM 903 C HIS 118 15.391 84.338 8.473 1.00 30.00 C ATOM 904 O HIS 118 16.341 83.568 8.606 1.00 30.00 O ATOM 905 CB HIS 118 16.320 86.326 9.574 1.00 30.00 C ATOM 906 CG HIS 118 16.432 87.226 8.385 1.00 30.00 C ATOM 907 ND1 HIS 118 15.653 88.344 8.194 1.00 30.00 N ATOM 908 CD2 HIS 118 17.273 87.168 7.317 1.00 30.00 C ATOM 909 CE1 HIS 118 16.058 88.905 7.027 1.00 30.00 C ATOM 910 NE2 HIS 118 17.039 88.227 6.458 1.00 30.00 N ATOM 911 N CYS 119 14.559 84.294 7.411 1.00 30.00 N ATOM 912 CA CYS 119 14.652 83.259 6.416 1.00 30.00 C ATOM 913 C CYS 119 15.438 83.738 5.240 1.00 30.00 C ATOM 914 O CYS 119 15.360 84.900 4.846 1.00 30.00 O ATOM 915 CB CYS 119 13.265 82.805 5.916 1.00 30.00 C ATOM 916 SG CYS 119 13.310 81.497 4.653 1.00 30.00 S ATOM 917 N SER 120 16.225 82.811 4.653 1.00 30.00 N ATOM 918 CA SER 120 17.062 83.099 3.525 1.00 30.00 C ATOM 919 C SER 120 16.968 81.943 2.576 1.00 30.00 C ATOM 920 O SER 120 16.028 81.150 2.616 1.00 30.00 O ATOM 921 CB SER 120 18.553 83.231 3.881 1.00 30.00 C ATOM 922 OG SER 120 18.772 84.346 4.730 1.00 30.00 O ATOM 923 N GLU 121 17.972 81.836 1.686 1.00 30.00 N ATOM 924 CA GLU 121 17.991 80.852 0.641 1.00 30.00 C ATOM 925 C GLU 121 18.006 79.457 1.191 1.00 30.00 C ATOM 926 O GLU 121 17.273 78.593 0.713 1.00 30.00 O ATOM 927 CB GLU 121 19.235 80.974 -0.256 1.00 30.00 C ATOM 928 CG GLU 121 19.252 79.951 -1.393 1.00 30.00 C ATOM 929 CD GLU 121 20.615 79.987 -2.075 1.00 30.00 C ATOM 930 OE1 GLU 121 21.432 80.879 -1.724 1.00 30.00 O ATOM 931 OE2 GLU 121 20.857 79.118 -2.955 1.00 30.00 O ATOM 932 N ASP 122 18.840 79.195 2.214 1.00 30.00 N ATOM 933 CA ASP 122 19.007 77.858 2.713 1.00 30.00 C ATOM 934 C ASP 122 17.716 77.345 3.278 1.00 30.00 C ATOM 935 O ASP 122 17.321 76.212 3.007 1.00 30.00 O ATOM 936 CB ASP 122 20.055 77.804 3.843 1.00 30.00 C ATOM 937 CG ASP 122 20.347 76.355 4.210 1.00 30.00 C ATOM 938 OD1 ASP 122 19.838 75.447 3.503 1.00 30.00 O ATOM 939 OD2 ASP 122 21.088 76.139 5.206 1.00 30.00 O ATOM 940 N CYS 123 17.017 78.169 4.079 1.00 30.00 N ATOM 941 CA CYS 123 15.805 77.730 4.711 1.00 30.00 C ATOM 942 C CYS 123 14.770 77.442 3.683 1.00 30.00 C ATOM 943 O CYS 123 14.004 76.489 3.809 1.00 30.00 O ATOM 944 CB CYS 123 15.225 78.771 5.680 1.00 30.00 C ATOM 945 SG CYS 123 16.257 78.982 7.161 1.00 30.00 S ATOM 946 N LEU 124 14.721 78.274 2.632 1.00 30.00 N ATOM 947 CA LEU 124 13.711 78.123 1.634 1.00 30.00 C ATOM 948 C LEU 124 13.894 76.790 0.966 1.00 30.00 C ATOM 949 O LEU 124 12.925 76.077 0.716 1.00 30.00 O ATOM 950 CB LEU 124 13.793 79.216 0.557 1.00 30.00 C ATOM 951 CG LEU 124 12.550 79.273 -0.345 1.00 30.00 C ATOM 952 CD1 LEU 124 11.332 79.777 0.448 1.00 30.00 C ATOM 953 CD2 LEU 124 12.813 80.080 -1.622 1.00 30.00 C ATOM 954 N SER 125 15.153 76.419 0.654 1.00 30.00 N ATOM 955 CA SER 125 15.415 75.174 -0.014 1.00 30.00 C ATOM 956 C SER 125 15.048 74.014 0.867 1.00 30.00 C ATOM 957 O SER 125 14.322 73.116 0.443 1.00 30.00 O ATOM 958 CB SER 125 16.896 75.002 -0.396 1.00 30.00 C ATOM 959 OG SER 125 17.091 73.756 -1.050 1.00 30.00 O ATOM 960 N ARG 126 15.539 74.020 2.124 1.00 30.00 N ATOM 961 CA ARG 126 15.381 72.927 3.048 1.00 30.00 C ATOM 962 C ARG 126 13.945 72.702 3.424 1.00 30.00 C ATOM 963 O ARG 126 13.496 71.557 3.461 1.00 30.00 O ATOM 964 CB ARG 126 16.195 73.120 4.340 1.00 30.00 C ATOM 965 CG ARG 126 15.826 74.375 5.132 1.00 30.00 C ATOM 966 CD ARG 126 16.647 74.549 6.413 1.00 30.00 C ATOM 967 NE ARG 126 17.731 75.534 6.139 1.00 30.00 N ATOM 968 CZ ARG 126 18.349 76.157 7.183 1.00 30.00 C ATOM 969 NH1 ARG 126 18.001 75.836 8.462 1.00 30.00 H ATOM 970 NH2 ARG 126 19.306 77.104 6.952 1.00 30.00 H ATOM 971 N GLY 127 13.170 73.778 3.679 1.00 30.00 N ATOM 972 CA GLY 127 11.801 73.607 4.082 1.00 30.00 C ATOM 973 C GLY 127 11.591 74.249 5.422 1.00 30.00 C ATOM 974 O GLY 127 10.490 74.713 5.719 1.00 30.00 O ATOM 975 N ASP 128 12.641 74.329 6.266 1.00 30.00 N ATOM 976 CA ASP 128 12.461 74.904 7.570 1.00 30.00 C ATOM 977 C ASP 128 12.659 76.379 7.505 1.00 30.00 C ATOM 978 O ASP 128 13.778 76.886 7.582 1.00 30.00 O ATOM 979 CB ASP 128 13.419 74.347 8.633 1.00 30.00 C ATOM 980 CG ASP 128 12.828 73.027 9.093 1.00 30.00 C ATOM 981 OD1 ASP 128 11.646 73.046 9.528 1.00 30.00 O ATOM 982 OD2 ASP 128 13.543 71.992 9.026 1.00 30.00 O ATOM 983 N CYS 129 11.542 77.116 7.392 1.00 30.00 N ATOM 984 CA CYS 129 11.614 78.539 7.319 1.00 30.00 C ATOM 985 C CYS 129 10.897 79.111 8.497 1.00 30.00 C ATOM 986 O CYS 129 10.368 78.380 9.335 1.00 30.00 O ATOM 987 CB CYS 129 11.030 79.107 6.010 1.00 30.00 C ATOM 988 SG CYS 129 9.474 78.312 5.512 1.00 30.00 S ATOM 989 N CYS 130 10.924 80.456 8.605 1.00 30.00 N ATOM 990 CA CYS 130 10.250 81.168 9.647 1.00 30.00 C ATOM 991 C CYS 130 8.786 81.031 9.369 1.00 30.00 C ATOM 992 O CYS 130 8.390 80.526 8.321 1.00 30.00 O ATOM 993 CB CYS 130 10.616 82.662 9.692 1.00 30.00 C ATOM 994 SG CYS 130 10.319 83.498 8.105 1.00 30.00 S ATOM 995 N THR 131 7.945 81.472 10.322 1.00 30.00 N ATOM 996 CA THR 131 6.521 81.277 10.258 1.00 30.00 C ATOM 997 C THR 131 5.896 81.949 9.072 1.00 30.00 C ATOM 998 O THR 131 5.012 81.377 8.437 1.00 30.00 O ATOM 999 CB THR 131 5.806 81.794 11.471 1.00 30.00 C ATOM 1000 OG1 THR 131 6.290 81.148 12.638 1.00 30.00 O ATOM 1001 CG2 THR 131 4.302 81.524 11.299 1.00 30.00 C ATOM 1002 N ASN 132 6.340 83.169 8.722 1.00 30.00 N ATOM 1003 CA ASN 132 5.681 83.933 7.697 1.00 30.00 C ATOM 1004 C ASN 132 5.650 83.155 6.417 1.00 30.00 C ATOM 1005 O ASN 132 4.617 83.095 5.749 1.00 30.00 O ATOM 1006 CB ASN 132 6.401 85.263 7.416 1.00 30.00 C ATOM 1007 CG ASN 132 6.329 86.102 8.683 1.00 30.00 C ATOM 1008 OD1 ASN 132 7.082 85.885 9.632 1.00 30.00 O ATOM 1009 ND2 ASN 132 5.400 87.095 8.696 1.00 30.00 N ATOM 1010 N TYR 133 6.786 82.551 6.024 1.00 30.00 N ATOM 1011 CA TYR 133 6.831 81.810 4.793 1.00 30.00 C ATOM 1012 C TYR 133 5.997 80.564 4.844 1.00 30.00 C ATOM 1013 O TYR 133 5.215 80.292 3.933 1.00 30.00 O ATOM 1014 CB TYR 133 8.252 81.362 4.400 1.00 30.00 C ATOM 1015 CG TYR 133 8.981 82.514 3.804 1.00 30.00 C ATOM 1016 CD1 TYR 133 9.589 83.461 4.596 1.00 30.00 C ATOM 1017 CD2 TYR 133 9.040 82.646 2.436 1.00 30.00 C ATOM 1018 CE1 TYR 133 10.257 84.521 4.029 1.00 30.00 C ATOM 1019 CE2 TYR 133 9.707 83.703 1.864 1.00 30.00 C ATOM 1020 CZ TYR 133 10.320 84.641 2.661 1.00 30.00 C ATOM 1021 OH TYR 133 11.006 85.729 2.081 1.00 30.00 H ATOM 1022 N GLN 134 6.131 79.780 5.928 1.00 30.00 N ATOM 1023 CA GLN 134 5.528 78.479 6.004 1.00 30.00 C ATOM 1024 C GLN 134 4.030 78.536 5.988 1.00 30.00 C ATOM 1025 O GLN 134 3.384 77.725 5.326 1.00 30.00 O ATOM 1026 CB GLN 134 5.967 77.721 7.264 1.00 30.00 C ATOM 1027 CG GLN 134 5.341 76.335 7.370 1.00 30.00 C ATOM 1028 CD GLN 134 6.036 75.593 8.500 1.00 30.00 C ATOM 1029 OE1 GLN 134 5.566 74.550 8.950 1.00 30.00 O ATOM 1030 NE2 GLN 134 7.191 76.139 8.968 1.00 30.00 N ATOM 1031 N VAL 135 3.440 79.483 6.738 1.00 30.00 N ATOM 1032 CA VAL 135 2.016 79.626 6.871 1.00 30.00 C ATOM 1033 C VAL 135 1.369 80.086 5.597 1.00 30.00 C ATOM 1034 O VAL 135 0.287 79.614 5.253 1.00 30.00 O ATOM 1035 CB VAL 135 1.646 80.623 7.929 1.00 30.00 C ATOM 1036 CG1 VAL 135 2.156 82.010 7.498 1.00 30.00 C ATOM 1037 CG2 VAL 135 0.125 80.554 8.150 1.00 30.00 C ATOM 1038 N VAL 136 2.024 81.005 4.855 1.00 30.00 N ATOM 1039 CA VAL 136 1.388 81.681 3.755 1.00 30.00 C ATOM 1040 C VAL 136 1.025 80.748 2.637 1.00 30.00 C ATOM 1041 O VAL 136 1.813 79.890 2.238 1.00 30.00 O ATOM 1042 CB VAL 136 2.223 82.786 3.170 1.00 30.00 C ATOM 1043 CG1 VAL 136 3.351 82.163 2.331 1.00 30.00 C ATOM 1044 CG2 VAL 136 1.307 83.736 2.384 1.00 30.00 C ATOM 1045 N CYS 137 -0.245 80.842 2.174 1.00 30.00 N ATOM 1046 CA CYS 137 -0.713 80.086 1.045 1.00 30.00 C ATOM 1047 C CYS 137 -0.199 80.654 -0.250 1.00 30.00 C ATOM 1048 O CYS 137 0.440 79.946 -1.027 1.00 30.00 O ATOM 1049 CB CYS 137 -2.251 80.010 0.969 1.00 30.00 C ATOM 1050 SG CYS 137 -3.065 81.631 0.839 1.00 30.00 S ATOM 1051 N LYS 138 -0.454 81.965 -0.484 1.00 30.00 N ATOM 1052 CA LYS 138 -0.117 82.679 -1.686 1.00 30.00 C ATOM 1053 C LYS 138 -0.329 84.128 -1.388 1.00 30.00 C ATOM 1054 O LYS 138 -0.437 84.524 -0.228 1.00 30.00 O ATOM 1055 CB LYS 138 -1.045 82.379 -2.879 1.00 30.00 C ATOM 1056 CG LYS 138 -0.747 81.072 -3.615 1.00 30.00 C ATOM 1057 CD LYS 138 -1.856 80.641 -4.580 1.00 30.00 C ATOM 1058 CE LYS 138 -2.599 79.377 -4.141 1.00 30.00 C ATOM 1059 NZ LYS 138 -3.292 79.603 -2.854 1.00 30.00 N ATOM 1060 N GLY 139 -0.341 84.964 -2.446 1.00 30.00 N ATOM 1061 CA GLY 139 -0.696 86.347 -2.282 1.00 30.00 C ATOM 1062 C GLY 139 0.505 87.216 -2.466 1.00 30.00 C ATOM 1063 O GLY 139 0.609 87.937 -3.455 1.00 30.00 O ATOM 1064 N GLU 140 1.475 87.166 -1.538 1.00 30.00 N ATOM 1065 CA GLU 140 2.618 87.998 -1.768 1.00 30.00 C ATOM 1066 C GLU 140 3.725 87.061 -2.086 1.00 30.00 C ATOM 1067 O GLU 140 3.899 86.048 -1.411 1.00 30.00 O ATOM 1068 CB GLU 140 3.055 88.895 -0.598 1.00 30.00 C ATOM 1069 CG GLU 140 4.114 89.913 -1.037 1.00 30.00 C ATOM 1070 CD GLU 140 4.363 90.883 0.106 1.00 30.00 C ATOM 1071 OE1 GLU 140 3.459 91.013 0.974 1.00 30.00 O ATOM 1072 OE2 GLU 140 5.455 91.510 0.126 1.00 30.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 69.62 44.3 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 73.70 41.9 62 100.0 62 ARMSMC BURIED . . . . . . . . 58.75 50.0 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.96 30.8 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 97.07 33.3 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 97.63 26.9 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 98.60 38.5 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.07 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 81.73 38.9 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 98.19 25.0 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 53.61 71.4 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.93 15.4 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 78.93 16.7 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 86.20 10.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 89.32 33.3 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.49 16.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 89.49 16.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 99.07 0.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 66.32 50.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 9.38 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 9.38 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.2083 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 9.93 32 100.0 32 CRMSCA BURIED . . . . . . . . 7.84 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 9.40 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 9.91 156 100.0 156 CRMSMC BURIED . . . . . . . . 8.06 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 11.96 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 12.35 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 12.60 112 100.0 112 CRMSSC BURIED . . . . . . . . 10.47 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 10.63 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 11.15 240 100.0 240 CRMSALL BURIED . . . . . . . . 9.34 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 21.534 0.577 0.652 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 20.854 0.548 0.631 32 100.0 32 ERRCA BURIED . . . . . . . . 23.210 0.648 0.706 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 21.522 0.576 0.652 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 20.897 0.550 0.633 156 100.0 156 ERRMC BURIED . . . . . . . . 23.022 0.640 0.697 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 19.363 0.502 0.566 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 18.994 0.490 0.552 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 18.474 0.467 0.537 112 100.0 112 ERRSC BURIED . . . . . . . . 21.242 0.577 0.627 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 20.544 0.543 0.612 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 19.852 0.514 0.591 240 100.0 240 ERRALL BURIED . . . . . . . . 22.127 0.608 0.662 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 13 26 45 45 DISTCA CA (P) 0.00 0.00 2.22 28.89 57.78 45 DISTCA CA (RMS) 0.00 0.00 2.86 4.06 5.67 DISTCA ALL (N) 0 2 10 78 199 345 345 DISTALL ALL (P) 0.00 0.58 2.90 22.61 57.68 345 DISTALL ALL (RMS) 0.00 1.53 2.36 3.91 6.38 DISTALL END of the results output