####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS114_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS114_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 68 - 89 4.84 10.63 LCS_AVERAGE: 51.25 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 74 - 87 1.93 10.48 LONGEST_CONTINUOUS_SEGMENT: 14 75 - 88 1.69 10.03 LCS_AVERAGE: 23.38 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 77 - 87 0.96 10.47 LCS_AVERAGE: 16.69 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 6 19 0 3 5 5 5 13 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT S 57 S 57 3 6 19 3 3 5 5 5 6 13 17 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT C 58 C 58 5 6 19 3 5 9 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT K 59 K 59 5 6 19 3 5 6 6 6 6 9 10 19 20 22 23 24 27 28 29 31 32 33 34 LCS_GDT G 60 G 60 5 6 19 5 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT R 61 R 61 5 6 19 3 5 6 11 13 14 17 17 18 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT C 62 C 62 5 6 19 3 5 6 6 8 11 13 14 15 20 21 24 26 27 28 30 31 32 33 35 LCS_GDT F 63 F 63 3 6 19 3 4 4 5 7 9 10 11 14 17 21 22 24 26 28 30 31 32 33 35 LCS_GDT E 64 E 64 4 6 19 3 4 5 5 7 9 10 14 17 20 21 22 24 27 28 30 31 32 33 35 LCS_GDT L 65 L 65 4 6 19 3 8 9 9 12 13 14 17 17 20 21 22 24 27 28 29 31 32 33 35 LCS_GDT Q 66 Q 66 4 6 19 3 12 12 13 15 16 17 18 18 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT E 67 E 67 4 6 19 3 4 5 5 7 9 10 11 12 16 21 24 26 27 28 30 31 32 33 35 LCS_GDT V 68 V 68 4 6 22 3 4 5 5 6 9 10 11 12 20 21 24 26 27 28 30 31 32 33 35 LCS_GDT G 69 G 69 4 5 22 0 3 4 7 9 11 13 15 17 19 22 23 26 27 28 30 31 32 33 35 LCS_GDT P 70 P 70 4 5 22 3 3 4 5 5 6 11 11 13 17 19 21 23 25 26 27 30 32 33 35 LCS_GDT P 71 P 71 4 5 22 3 3 4 5 5 6 6 9 12 16 19 20 22 25 26 27 30 31 31 34 LCS_GDT D 72 D 72 3 4 22 3 3 4 5 10 11 12 12 13 17 19 20 23 25 26 27 30 31 31 34 LCS_GDT C 73 C 73 3 4 22 3 3 4 5 7 9 10 11 12 17 19 21 23 25 26 27 30 31 33 34 LCS_GDT R 74 R 74 3 14 22 3 3 5 8 9 11 14 17 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT C 75 C 75 3 14 22 3 3 11 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT D 76 D 76 4 14 22 4 4 9 10 11 13 16 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT N 77 N 77 11 14 22 4 4 10 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT L 78 L 78 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT C 79 C 79 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT K 80 K 80 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT S 81 S 81 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT Y 82 Y 82 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT S 83 S 83 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT S 84 S 84 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT C 85 C 85 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT C 86 C 86 11 14 22 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT H 87 H 87 11 14 22 5 12 12 13 15 16 17 18 19 20 22 23 24 27 28 30 31 32 33 34 LCS_GDT D 88 D 88 8 14 22 3 8 9 11 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 LCS_GDT F 89 F 89 8 9 22 4 8 9 9 10 11 12 13 18 19 22 24 26 27 28 30 31 32 33 35 LCS_GDT D 90 D 90 8 9 19 4 8 9 9 10 11 12 12 13 17 19 21 23 25 28 30 31 32 33 35 LCS_GDT E 91 E 91 8 9 19 4 8 9 9 10 11 12 14 16 19 22 24 26 27 28 30 31 32 33 35 LCS_GDT L 92 L 92 8 9 19 4 8 9 9 10 11 12 12 15 17 19 21 26 27 28 30 31 32 33 35 LCS_GDT C 93 C 93 8 9 17 4 8 9 9 10 11 12 12 13 17 19 21 23 25 26 30 31 32 33 35 LCS_GDT L 94 L 94 8 9 17 4 8 9 9 10 11 12 12 13 15 17 19 22 25 26 27 28 31 33 35 LCS_GDT K 95 K 95 8 9 17 4 8 9 9 10 11 12 12 13 15 17 19 22 25 26 27 29 31 33 35 LCS_AVERAGE LCS_A: 30.44 ( 16.69 23.38 51.25 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 12 12 13 15 16 17 18 19 20 22 24 26 27 28 30 31 32 33 35 GDT PERCENT_AT 22.50 30.00 30.00 32.50 37.50 40.00 42.50 45.00 47.50 50.00 55.00 60.00 65.00 67.50 70.00 75.00 77.50 80.00 82.50 87.50 GDT RMS_LOCAL 0.28 0.75 0.75 0.93 1.34 1.58 1.86 2.13 2.56 2.74 3.06 4.10 4.58 4.24 4.41 5.19 5.29 5.48 5.64 6.57 GDT RMS_ALL_AT 10.43 10.35 10.35 10.38 10.21 9.96 9.87 9.80 9.66 9.61 9.66 8.55 7.95 9.54 9.54 8.16 8.22 8.10 8.19 7.62 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 76 D 76 # possible swapping detected: F 89 F 89 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 4.040 0 0.315 0.315 6.046 29.286 29.286 LGA S 57 S 57 6.435 0 0.267 0.748 10.351 24.048 16.270 LGA C 58 C 58 1.992 0 0.649 0.766 4.079 52.381 50.635 LGA K 59 K 59 5.586 0 0.593 0.550 14.320 34.762 16.561 LGA G 60 G 60 0.702 0 0.220 0.220 3.080 67.500 67.500 LGA R 61 R 61 5.278 0 0.328 1.349 10.743 23.095 17.879 LGA C 62 C 62 9.072 0 0.444 0.439 10.506 3.571 2.460 LGA F 63 F 63 10.269 0 0.373 1.193 19.443 0.595 0.216 LGA E 64 E 64 8.890 0 0.347 0.740 12.533 1.190 0.688 LGA L 65 L 65 8.796 0 0.185 0.834 13.401 7.024 3.571 LGA Q 66 Q 66 2.522 0 0.021 1.060 7.036 42.262 38.624 LGA E 67 E 67 6.906 0 0.578 1.151 8.436 15.595 10.370 LGA V 68 V 68 9.945 0 0.556 0.642 13.339 1.310 0.748 LGA G 69 G 69 11.897 0 0.269 0.269 12.643 0.000 0.000 LGA P 70 P 70 16.595 0 0.065 0.213 18.589 0.000 0.000 LGA P 71 P 71 17.106 0 0.328 0.384 21.298 0.000 0.000 LGA D 72 D 72 15.885 3 0.602 0.599 17.065 0.000 0.000 LGA C 73 C 73 13.125 0 0.593 1.042 16.579 0.000 0.000 LGA R 74 R 74 5.953 0 0.578 0.823 11.548 24.643 13.333 LGA C 75 C 75 1.701 0 0.366 0.828 3.541 61.429 58.968 LGA D 76 D 76 4.518 0 0.505 0.754 9.323 47.143 27.143 LGA N 77 N 77 2.056 0 0.124 0.809 4.682 67.024 60.833 LGA L 78 L 78 1.769 0 0.268 0.919 7.616 79.405 52.262 LGA C 79 C 79 0.818 0 0.032 0.750 2.614 90.595 85.000 LGA K 80 K 80 0.879 0 0.038 1.093 6.671 85.952 60.370 LGA S 81 S 81 1.485 0 0.024 0.042 1.665 79.286 77.143 LGA Y 82 Y 82 1.448 0 0.050 0.133 2.157 81.429 75.079 LGA S 83 S 83 0.866 0 0.209 0.208 2.367 90.595 83.333 LGA S 84 S 84 0.574 0 0.361 0.633 3.063 90.595 82.302 LGA C 85 C 85 0.995 0 0.047 0.177 1.299 85.952 85.952 LGA C 86 C 86 1.264 0 0.080 0.109 2.314 79.286 77.222 LGA H 87 H 87 2.302 0 0.118 1.159 5.879 69.048 47.524 LGA D 88 D 88 2.959 0 0.525 1.224 6.869 42.381 35.952 LGA F 89 F 89 8.089 0 0.059 1.417 13.952 5.476 2.121 LGA D 90 D 90 14.204 0 0.038 0.970 17.009 0.000 0.000 LGA E 91 E 91 12.913 0 0.144 1.102 16.285 0.000 1.376 LGA L 92 L 92 13.653 0 0.190 0.938 17.578 0.000 0.000 LGA C 93 C 93 17.031 0 0.032 0.100 21.750 0.000 0.000 LGA L 94 L 94 22.067 0 0.187 0.384 24.683 0.000 0.000 LGA K 95 K 95 24.546 0 0.024 0.893 28.290 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 7.463 7.369 8.805 34.571 29.518 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 18 2.13 45.625 39.912 0.809 LGA_LOCAL RMSD: 2.125 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.801 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.463 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.392547 * X + -0.919068 * Y + 0.034928 * Z + 40.190437 Y_new = -0.790700 * X + 0.317834 * Y + -0.523235 * Z + 76.836304 Z_new = 0.469787 * X + -0.233012 * Y + -0.851473 * Z + 11.771371 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.031604 -0.489050 -2.874475 [DEG: -116.4023 -28.0205 -164.6953 ] ZXZ: 0.066656 2.589583 2.031235 [DEG: 3.8191 148.3722 116.3812 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS114_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS114_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 18 2.13 39.912 7.46 REMARK ---------------------------------------------------------- MOLECULE T0543TS114_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 30.991 70.192 21.895 1.00 30.00 N ATOM 423 CA GLY 56 31.632 70.323 20.617 1.00 30.00 C ATOM 424 C GLY 56 30.703 70.182 19.448 1.00 30.00 C ATOM 425 O GLY 56 30.884 70.901 18.467 1.00 30.00 O ATOM 426 N SER 57 29.662 69.329 19.511 1.00 30.00 N ATOM 427 CA SER 57 28.902 69.082 18.311 1.00 30.00 C ATOM 428 C SER 57 27.990 70.207 17.939 1.00 30.00 C ATOM 429 O SER 57 26.782 70.155 18.166 1.00 30.00 O ATOM 430 CB SER 57 28.049 67.799 18.388 1.00 30.00 C ATOM 431 OG SER 57 27.071 67.914 19.411 1.00 30.00 O ATOM 432 N CYS 58 28.564 71.241 17.294 1.00 30.00 N ATOM 433 CA CYS 58 27.788 72.306 16.738 1.00 30.00 C ATOM 434 C CYS 58 27.257 71.726 15.461 1.00 30.00 C ATOM 435 O CYS 58 28.006 71.109 14.705 1.00 30.00 O ATOM 436 CB CYS 58 28.625 73.559 16.415 1.00 30.00 C ATOM 437 SG CYS 58 27.641 74.915 15.708 1.00 30.00 S ATOM 438 N LYS 59 25.965 71.963 15.162 1.00 30.00 N ATOM 439 CA LYS 59 25.293 71.281 14.091 1.00 30.00 C ATOM 440 C LYS 59 25.982 71.451 12.779 1.00 30.00 C ATOM 441 O LYS 59 26.173 70.480 12.050 1.00 30.00 O ATOM 442 CB LYS 59 23.862 71.783 13.857 1.00 30.00 C ATOM 443 CG LYS 59 23.267 71.143 12.604 1.00 30.00 C ATOM 444 CD LYS 59 21.801 71.479 12.344 1.00 30.00 C ATOM 445 CE LYS 59 21.287 70.919 11.016 1.00 30.00 C ATOM 446 NZ LYS 59 19.868 71.285 10.821 1.00 30.00 N ATOM 447 N GLY 60 26.341 72.692 12.426 1.00 30.00 N ATOM 448 CA GLY 60 26.930 72.965 11.147 1.00 30.00 C ATOM 449 C GLY 60 28.318 72.410 11.004 1.00 30.00 C ATOM 450 O GLY 60 28.709 71.995 9.912 1.00 30.00 O ATOM 451 N ARG 61 29.130 72.511 12.078 1.00 30.00 N ATOM 452 CA ARG 61 30.521 72.146 12.058 1.00 30.00 C ATOM 453 C ARG 61 30.794 70.665 11.977 1.00 30.00 C ATOM 454 O ARG 61 31.420 70.163 11.045 1.00 30.00 O ATOM 455 CB ARG 61 31.247 72.651 13.317 1.00 30.00 C ATOM 456 CG ARG 61 31.423 74.171 13.384 1.00 30.00 C ATOM 457 CD ARG 61 30.129 74.982 13.448 1.00 30.00 C ATOM 458 NE ARG 61 30.532 76.399 13.673 1.00 30.00 N ATOM 459 CZ ARG 61 30.917 77.178 12.621 1.00 30.00 C ATOM 460 NH1 ARG 61 30.893 76.670 11.355 1.00 30.00 H ATOM 461 NH2 ARG 61 31.328 78.463 12.836 1.00 30.00 H ATOM 462 N CYS 62 30.285 69.960 12.996 1.00 30.00 N ATOM 463 CA CYS 62 30.418 68.596 13.424 1.00 30.00 C ATOM 464 C CYS 62 29.499 67.658 12.714 1.00 30.00 C ATOM 465 O CYS 62 29.013 66.716 13.334 1.00 30.00 O ATOM 466 CB CYS 62 30.224 68.433 14.941 1.00 30.00 C ATOM 467 SG CYS 62 31.517 69.303 15.878 1.00 30.00 S ATOM 468 N PHE 63 29.143 67.930 11.451 1.00 30.00 N ATOM 469 CA PHE 63 28.087 67.224 10.788 1.00 30.00 C ATOM 470 C PHE 63 28.162 65.718 10.873 1.00 30.00 C ATOM 471 O PHE 63 27.154 65.117 11.233 1.00 30.00 O ATOM 472 CB PHE 63 27.967 67.632 9.304 1.00 30.00 C ATOM 473 CG PHE 63 29.262 67.358 8.613 1.00 30.00 C ATOM 474 CD1 PHE 63 30.250 68.315 8.587 1.00 30.00 C ATOM 475 CD2 PHE 63 29.494 66.153 7.986 1.00 30.00 C ATOM 476 CE1 PHE 63 31.449 68.073 7.956 1.00 30.00 C ATOM 477 CE2 PHE 63 30.690 65.902 7.355 1.00 30.00 C ATOM 478 CZ PHE 63 31.671 66.865 7.340 1.00 30.00 C ATOM 479 N GLU 64 29.277 65.022 10.557 1.00 30.00 N ATOM 480 CA GLU 64 29.139 63.590 10.680 1.00 30.00 C ATOM 481 C GLU 64 29.787 63.108 11.929 1.00 30.00 C ATOM 482 O GLU 64 30.830 62.460 11.868 1.00 30.00 O ATOM 483 CB GLU 64 29.730 62.767 9.522 1.00 30.00 C ATOM 484 CG GLU 64 28.824 62.712 8.292 1.00 30.00 C ATOM 485 CD GLU 64 29.300 61.561 7.419 1.00 30.00 C ATOM 486 OE1 GLU 64 30.387 61.002 7.725 1.00 30.00 O ATOM 487 OE2 GLU 64 28.582 61.218 6.443 1.00 30.00 O ATOM 488 N LEU 65 29.291 63.541 13.103 1.00 30.00 N ATOM 489 CA LEU 65 29.771 62.968 14.320 1.00 30.00 C ATOM 490 C LEU 65 28.927 61.820 14.815 1.00 30.00 C ATOM 491 O LEU 65 29.374 60.679 14.904 1.00 30.00 O ATOM 492 CB LEU 65 29.863 64.032 15.431 1.00 30.00 C ATOM 493 CG LEU 65 30.776 63.681 16.628 1.00 30.00 C ATOM 494 CD1 LEU 65 30.744 64.812 17.665 1.00 30.00 C ATOM 495 CD2 LEU 65 30.505 62.301 17.242 1.00 30.00 C ATOM 496 N GLN 66 27.628 62.099 15.083 1.00 30.00 N ATOM 497 CA GLN 66 26.766 61.155 15.752 1.00 30.00 C ATOM 498 C GLN 66 25.745 60.667 14.773 1.00 30.00 C ATOM 499 O GLN 66 25.256 61.430 13.944 1.00 30.00 O ATOM 500 CB GLN 66 25.995 61.773 16.933 1.00 30.00 C ATOM 501 CG GLN 66 26.896 62.283 18.061 1.00 30.00 C ATOM 502 CD GLN 66 26.022 62.933 19.126 1.00 30.00 C ATOM 503 OE1 GLN 66 24.926 62.467 19.432 1.00 30.00 O ATOM 504 NE2 GLN 66 26.523 64.055 19.707 1.00 30.00 N ATOM 505 N GLU 67 25.453 59.347 14.789 1.00 30.00 N ATOM 506 CA GLU 67 24.472 58.842 13.870 1.00 30.00 C ATOM 507 C GLU 67 23.048 59.155 14.258 1.00 30.00 C ATOM 508 O GLU 67 22.296 59.699 13.453 1.00 30.00 O ATOM 509 CB GLU 67 24.573 57.322 13.629 1.00 30.00 C ATOM 510 CG GLU 67 24.442 56.454 14.882 1.00 30.00 C ATOM 511 CD GLU 67 25.837 56.201 15.439 1.00 30.00 C ATOM 512 OE1 GLU 67 26.748 55.875 14.632 1.00 30.00 O ATOM 513 OE2 GLU 67 26.008 56.332 16.680 1.00 30.00 O ATOM 514 N VAL 68 22.643 58.807 15.502 1.00 30.00 N ATOM 515 CA VAL 68 21.273 58.914 15.945 1.00 30.00 C ATOM 516 C VAL 68 20.812 60.323 16.186 1.00 30.00 C ATOM 517 O VAL 68 19.761 60.728 15.691 1.00 30.00 O ATOM 518 CB VAL 68 21.022 58.144 17.211 1.00 30.00 C ATOM 519 CG1 VAL 68 19.553 58.332 17.625 1.00 30.00 C ATOM 520 CG2 VAL 68 21.416 56.675 16.976 1.00 30.00 C ATOM 521 N GLY 69 21.593 61.120 16.940 1.00 30.00 N ATOM 522 CA GLY 69 21.127 62.416 17.353 1.00 30.00 C ATOM 523 C GLY 69 21.015 63.351 16.194 1.00 30.00 C ATOM 524 O GLY 69 21.925 63.494 15.379 1.00 30.00 O ATOM 525 N PRO 70 19.904 64.037 16.156 1.00 30.00 N ATOM 526 CA PRO 70 19.690 64.995 15.108 1.00 30.00 C ATOM 527 C PRO 70 20.630 66.138 15.319 1.00 30.00 C ATOM 528 O PRO 70 20.906 66.472 16.469 1.00 30.00 O ATOM 529 CB PRO 70 18.210 65.358 15.170 1.00 30.00 C ATOM 530 CG PRO 70 17.557 64.086 15.747 1.00 30.00 C ATOM 531 CD PRO 70 18.654 63.447 16.615 1.00 30.00 C ATOM 532 N PRO 71 21.113 66.732 14.264 1.00 30.00 N ATOM 533 CA PRO 71 22.110 67.761 14.362 1.00 30.00 C ATOM 534 C PRO 71 21.726 68.857 15.303 1.00 30.00 C ATOM 535 O PRO 71 22.586 69.306 16.059 1.00 30.00 O ATOM 536 CB PRO 71 22.286 68.290 12.943 1.00 30.00 C ATOM 537 CG PRO 71 20.895 68.071 12.318 1.00 30.00 C ATOM 538 CD PRO 71 20.370 66.805 13.018 1.00 30.00 C ATOM 539 N ASP 72 20.473 69.342 15.225 1.00 30.00 N ATOM 540 CA ASP 72 20.006 70.390 16.089 1.00 30.00 C ATOM 541 C ASP 72 19.842 69.873 17.482 1.00 30.00 C ATOM 542 O ASP 72 20.277 70.501 18.446 1.00 30.00 O ATOM 543 CB ASP 72 18.622 70.922 15.675 1.00 30.00 C ATOM 544 CG ASP 72 18.768 71.711 14.386 1.00 30.00 C ATOM 545 OD1 ASP 72 19.883 72.246 14.148 1.00 30.00 O ATOM 546 OD2 ASP 72 17.769 71.793 13.623 1.00 30.00 O ATOM 547 N CYS 73 19.220 68.685 17.606 1.00 30.00 N ATOM 548 CA CYS 73 18.853 68.144 18.883 1.00 30.00 C ATOM 549 C CYS 73 20.062 67.868 19.706 1.00 30.00 C ATOM 550 O CYS 73 20.054 68.098 20.913 1.00 30.00 O ATOM 551 CB CYS 73 18.038 66.844 18.773 1.00 30.00 C ATOM 552 SG CYS 73 16.411 67.124 18.012 1.00 30.00 S ATOM 553 N ARG 74 21.129 67.343 19.084 1.00 30.00 N ATOM 554 CA ARG 74 22.325 67.059 19.820 1.00 30.00 C ATOM 555 C ARG 74 22.874 68.358 20.309 1.00 30.00 C ATOM 556 O ARG 74 23.301 68.480 21.456 1.00 30.00 O ATOM 557 CB ARG 74 23.439 66.481 18.933 1.00 30.00 C ATOM 558 CG ARG 74 23.009 65.295 18.078 1.00 30.00 C ATOM 559 CD ARG 74 24.136 64.732 17.208 1.00 30.00 C ATOM 560 NE ARG 74 24.616 65.817 16.303 1.00 30.00 N ATOM 561 CZ ARG 74 25.181 65.502 15.100 1.00 30.00 C ATOM 562 NH1 ARG 74 25.250 64.199 14.698 1.00 30.00 H ATOM 563 NH2 ARG 74 25.676 66.489 14.299 1.00 30.00 H ATOM 564 N CYS 75 22.876 69.369 19.419 1.00 30.00 N ATOM 565 CA CYS 75 23.484 70.627 19.719 1.00 30.00 C ATOM 566 C CYS 75 22.821 71.273 20.894 1.00 30.00 C ATOM 567 O CYS 75 23.504 71.631 21.849 1.00 30.00 O ATOM 568 CB CYS 75 23.400 71.603 18.525 1.00 30.00 C ATOM 569 SG CYS 75 24.210 73.204 18.829 1.00 30.00 S ATOM 570 N ASP 76 21.497 71.538 20.821 1.00 30.00 N ATOM 571 CA ASP 76 20.837 72.145 21.946 1.00 30.00 C ATOM 572 C ASP 76 20.336 71.238 23.046 1.00 30.00 C ATOM 573 O ASP 76 20.774 71.346 24.190 1.00 30.00 O ATOM 574 CB ASP 76 19.737 73.150 21.525 1.00 30.00 C ATOM 575 CG ASP 76 18.722 72.553 20.550 1.00 30.00 C ATOM 576 OD1 ASP 76 18.079 71.515 20.859 1.00 30.00 O ATOM 577 OD2 ASP 76 18.561 73.174 19.466 1.00 30.00 O ATOM 578 N ASN 77 19.437 70.284 22.711 1.00 30.00 N ATOM 579 CA ASN 77 18.703 69.521 23.692 1.00 30.00 C ATOM 580 C ASN 77 19.562 68.583 24.473 1.00 30.00 C ATOM 581 O ASN 77 19.551 68.600 25.704 1.00 30.00 O ATOM 582 CB ASN 77 17.577 68.679 23.065 1.00 30.00 C ATOM 583 CG ASN 77 16.496 69.617 22.550 1.00 30.00 C ATOM 584 OD1 ASN 77 16.173 69.622 21.363 1.00 30.00 O ATOM 585 ND2 ASN 77 15.912 70.432 23.470 1.00 30.00 N ATOM 586 N LEU 78 20.330 67.738 23.763 1.00 30.00 N ATOM 587 CA LEU 78 21.142 66.724 24.366 1.00 30.00 C ATOM 588 C LEU 78 22.222 67.383 25.158 1.00 30.00 C ATOM 589 O LEU 78 22.505 66.985 26.285 1.00 30.00 O ATOM 590 CB LEU 78 21.763 65.811 23.284 1.00 30.00 C ATOM 591 CG LEU 78 22.635 64.621 23.746 1.00 30.00 C ATOM 592 CD1 LEU 78 23.024 63.761 22.536 1.00 30.00 C ATOM 593 CD2 LEU 78 23.892 65.050 24.517 1.00 30.00 C ATOM 594 N CYS 79 22.830 68.441 24.595 1.00 30.00 N ATOM 595 CA CYS 79 23.939 69.089 25.229 1.00 30.00 C ATOM 596 C CYS 79 23.515 69.666 26.543 1.00 30.00 C ATOM 597 O CYS 79 24.286 69.648 27.499 1.00 30.00 O ATOM 598 CB CYS 79 24.545 70.232 24.393 1.00 30.00 C ATOM 599 SG CYS 79 25.463 69.640 22.939 1.00 30.00 S ATOM 600 N LYS 80 22.284 70.207 26.619 1.00 30.00 N ATOM 601 CA LYS 80 21.795 70.853 27.805 1.00 30.00 C ATOM 602 C LYS 80 21.706 69.883 28.948 1.00 30.00 C ATOM 603 O LYS 80 22.154 70.191 30.051 1.00 30.00 O ATOM 604 CB LYS 80 20.391 71.462 27.585 1.00 30.00 C ATOM 605 CG LYS 80 19.789 72.236 28.767 1.00 30.00 C ATOM 606 CD LYS 80 19.393 71.381 29.976 1.00 30.00 C ATOM 607 CE LYS 80 18.800 72.191 31.130 1.00 30.00 C ATOM 608 NZ LYS 80 17.498 72.761 30.721 1.00 30.00 N ATOM 609 N SER 81 21.143 68.677 28.716 1.00 30.00 N ATOM 610 CA SER 81 20.924 67.729 29.779 1.00 30.00 C ATOM 611 C SER 81 22.238 67.314 30.376 1.00 30.00 C ATOM 612 O SER 81 22.368 67.153 31.589 1.00 30.00 O ATOM 613 CB SER 81 20.200 66.454 29.307 1.00 30.00 C ATOM 614 OG SER 81 18.876 66.763 28.896 1.00 30.00 O ATOM 615 N TYR 82 23.232 67.114 29.503 1.00 30.00 N ATOM 616 CA TYR 82 24.589 66.734 29.773 1.00 30.00 C ATOM 617 C TYR 82 25.351 67.861 30.401 1.00 30.00 C ATOM 618 O TYR 82 26.434 67.649 30.941 1.00 30.00 O ATOM 619 CB TYR 82 25.329 66.258 28.515 1.00 30.00 C ATOM 620 CG TYR 82 24.772 64.913 28.200 1.00 30.00 C ATOM 621 CD1 TYR 82 23.642 64.775 27.435 1.00 30.00 C ATOM 622 CD2 TYR 82 25.370 63.781 28.694 1.00 30.00 C ATOM 623 CE1 TYR 82 23.121 63.539 27.142 1.00 30.00 C ATOM 624 CE2 TYR 82 24.859 62.537 28.410 1.00 30.00 C ATOM 625 CZ TYR 82 23.735 62.413 27.632 1.00 30.00 C ATOM 626 OH TYR 82 23.212 61.137 27.342 1.00 30.00 H ATOM 627 N SER 83 24.862 69.106 30.260 1.00 30.00 N ATOM 628 CA SER 83 25.552 70.238 30.807 1.00 30.00 C ATOM 629 C SER 83 26.807 70.464 30.031 1.00 30.00 C ATOM 630 O SER 83 27.783 70.989 30.569 1.00 30.00 O ATOM 631 CB SER 83 25.960 70.037 32.277 1.00 30.00 C ATOM 632 OG SER 83 24.808 69.843 33.082 1.00 30.00 O ATOM 633 N SER 84 26.823 70.072 28.740 1.00 30.00 N ATOM 634 CA SER 84 28.002 70.323 27.963 1.00 30.00 C ATOM 635 C SER 84 27.613 70.968 26.666 1.00 30.00 C ATOM 636 O SER 84 27.511 70.294 25.641 1.00 30.00 O ATOM 637 CB SER 84 28.756 69.033 27.595 1.00 30.00 C ATOM 638 OG SER 84 29.161 68.347 28.771 1.00 30.00 O ATOM 639 N CYS 85 27.438 72.304 26.660 1.00 30.00 N ATOM 640 CA CYS 85 27.108 72.991 25.441 1.00 30.00 C ATOM 641 C CYS 85 28.236 73.908 25.128 1.00 30.00 C ATOM 642 O CYS 85 28.907 74.413 26.026 1.00 30.00 O ATOM 643 CB CYS 85 25.890 73.925 25.528 1.00 30.00 C ATOM 644 SG CYS 85 24.306 73.054 25.596 1.00 30.00 S ATOM 645 N CYS 86 28.467 74.146 23.824 1.00 30.00 N ATOM 646 CA CYS 86 29.488 75.077 23.441 1.00 30.00 C ATOM 647 C CYS 86 28.800 76.366 23.102 1.00 30.00 C ATOM 648 O CYS 86 27.810 76.379 22.368 1.00 30.00 O ATOM 649 CB CYS 86 30.303 74.637 22.212 1.00 30.00 C ATOM 650 SG CYS 86 31.370 73.204 22.551 1.00 30.00 S ATOM 651 N HIS 87 29.240 77.473 23.742 1.00 30.00 N ATOM 652 CA HIS 87 28.738 78.786 23.436 1.00 30.00 C ATOM 653 C HIS 87 29.312 79.298 22.143 1.00 30.00 C ATOM 654 O HIS 87 28.572 79.708 21.247 1.00 30.00 O ATOM 655 CB HIS 87 29.018 79.804 24.558 1.00 30.00 C ATOM 656 CG HIS 87 30.414 79.748 25.102 1.00 30.00 C ATOM 657 ND1 HIS 87 31.460 80.524 24.654 1.00 30.00 N ATOM 658 CD2 HIS 87 30.927 78.972 26.096 1.00 30.00 C ATOM 659 CE1 HIS 87 32.545 80.184 25.396 1.00 30.00 C ATOM 660 NE2 HIS 87 32.270 79.246 26.284 1.00 30.00 N ATOM 661 N ASP 88 30.658 79.275 22.013 1.00 30.00 N ATOM 662 CA ASP 88 31.335 79.742 20.829 1.00 30.00 C ATOM 663 C ASP 88 32.340 78.700 20.459 1.00 30.00 C ATOM 664 O ASP 88 33.179 78.316 21.271 1.00 30.00 O ATOM 665 CB ASP 88 32.065 81.082 21.008 1.00 30.00 C ATOM 666 CG ASP 88 31.007 82.174 20.954 1.00 30.00 C ATOM 667 OD1 ASP 88 30.059 82.025 20.137 1.00 30.00 O ATOM 668 OD2 ASP 88 31.126 83.165 21.721 1.00 30.00 O ATOM 669 N PHE 89 32.271 78.231 19.199 1.00 30.00 N ATOM 670 CA PHE 89 33.012 77.094 18.742 1.00 30.00 C ATOM 671 C PHE 89 34.500 77.278 18.750 1.00 30.00 C ATOM 672 O PHE 89 35.209 76.509 19.397 1.00 30.00 O ATOM 673 CB PHE 89 32.601 76.705 17.312 1.00 30.00 C ATOM 674 CG PHE 89 33.104 75.332 17.037 1.00 30.00 C ATOM 675 CD1 PHE 89 32.361 74.241 17.423 1.00 30.00 C ATOM 676 CD2 PHE 89 34.303 75.133 16.396 1.00 30.00 C ATOM 677 CE1 PHE 89 32.805 72.964 17.176 1.00 30.00 C ATOM 678 CE2 PHE 89 34.752 73.859 16.147 1.00 30.00 C ATOM 679 CZ PHE 89 34.004 72.773 16.536 1.00 30.00 C ATOM 680 N ASP 90 35.023 78.324 18.078 1.00 30.00 N ATOM 681 CA ASP 90 36.450 78.387 17.924 1.00 30.00 C ATOM 682 C ASP 90 37.149 78.531 19.234 1.00 30.00 C ATOM 683 O ASP 90 38.156 77.865 19.460 1.00 30.00 O ATOM 684 CB ASP 90 36.952 79.477 16.960 1.00 30.00 C ATOM 685 CG ASP 90 36.693 78.967 15.546 1.00 30.00 C ATOM 686 OD1 ASP 90 35.691 78.228 15.358 1.00 30.00 O ATOM 687 OD2 ASP 90 37.508 79.287 14.638 1.00 30.00 O ATOM 688 N GLU 91 36.639 79.377 20.145 1.00 30.00 N ATOM 689 CA GLU 91 37.336 79.595 21.379 1.00 30.00 C ATOM 690 C GLU 91 37.381 78.326 22.170 1.00 30.00 C ATOM 691 O GLU 91 38.396 78.018 22.787 1.00 30.00 O ATOM 692 CB GLU 91 36.683 80.666 22.269 1.00 30.00 C ATOM 693 CG GLU 91 35.297 80.281 22.792 1.00 30.00 C ATOM 694 CD GLU 91 34.768 81.450 23.609 1.00 30.00 C ATOM 695 OE1 GLU 91 35.172 81.590 24.795 1.00 30.00 O ATOM 696 OE2 GLU 91 33.951 82.226 23.048 1.00 30.00 O ATOM 697 N LEU 92 36.271 77.564 22.202 1.00 30.00 N ATOM 698 CA LEU 92 36.249 76.354 22.976 1.00 30.00 C ATOM 699 C LEU 92 37.205 75.349 22.423 1.00 30.00 C ATOM 700 O LEU 92 38.031 74.804 23.152 1.00 30.00 O ATOM 701 CB LEU 92 34.853 75.689 23.008 1.00 30.00 C ATOM 702 CG LEU 92 34.797 74.259 23.603 1.00 30.00 C ATOM 703 CD1 LEU 92 35.227 73.182 22.589 1.00 30.00 C ATOM 704 CD2 LEU 92 35.603 74.164 24.905 1.00 30.00 C ATOM 705 N CYS 93 37.111 75.080 21.109 1.00 30.00 N ATOM 706 CA CYS 93 37.909 74.078 20.478 1.00 30.00 C ATOM 707 C CYS 93 39.356 74.460 20.434 1.00 30.00 C ATOM 708 O CYS 93 40.234 73.619 20.601 1.00 30.00 O ATOM 709 CB CYS 93 37.428 73.740 19.065 1.00 30.00 C ATOM 710 SG CYS 93 35.814 72.906 19.091 1.00 30.00 S ATOM 711 N LEU 94 39.622 75.750 20.194 1.00 30.00 N ATOM 712 CA LEU 94 40.905 76.391 20.064 1.00 30.00 C ATOM 713 C LEU 94 41.655 76.533 21.354 1.00 30.00 C ATOM 714 O LEU 94 42.712 77.154 21.338 1.00 30.00 O ATOM 715 CB LEU 94 40.889 77.774 19.393 1.00 30.00 C ATOM 716 CG LEU 94 40.700 77.683 17.873 1.00 30.00 C ATOM 717 CD1 LEU 94 40.745 79.067 17.206 1.00 30.00 C ATOM 718 CD2 LEU 94 41.719 76.704 17.268 1.00 30.00 C ATOM 719 N LYS 95 41.089 76.146 22.518 1.00 30.00 N ATOM 720 CA LYS 95 41.825 76.293 23.757 1.00 30.00 C ATOM 721 C LYS 95 43.107 75.518 23.631 1.00 30.00 C ATOM 722 O LYS 95 43.115 74.394 23.140 1.00 30.00 O ATOM 723 CB LYS 95 41.056 75.763 24.982 1.00 30.00 C ATOM 724 CG LYS 95 41.843 75.825 26.294 1.00 30.00 C ATOM 725 CD LYS 95 42.166 77.239 26.780 1.00 30.00 C ATOM 726 CE LYS 95 42.972 77.255 28.081 1.00 30.00 C ATOM 727 NZ LYS 95 43.337 78.643 28.438 1.00 30.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 67.12 50.0 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 64.86 50.0 56 100.0 56 ARMSMC BURIED . . . . . . . . 72.53 50.0 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 84.61 52.8 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 85.79 51.4 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 82.72 52.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 88.76 54.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.23 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 62.23 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 88.74 44.4 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 22.95 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.48 44.4 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 65.94 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 57.89 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 76.40 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.51 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 74.51 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 81.86 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 30.87 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.46 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.46 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1866 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 7.93 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.06 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.63 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.08 142 100.0 142 CRMSMC BURIED . . . . . . . . 6.35 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.31 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 10.08 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.15 103 100.0 103 CRMSSC BURIED . . . . . . . . 7.73 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.88 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.50 219 100.0 219 CRMSALL BURIED . . . . . . . . 7.03 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 23.105 0.636 0.697 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 22.665 0.618 0.684 29 100.0 29 ERRCA BURIED . . . . . . . . 24.266 0.684 0.730 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 22.975 0.631 0.693 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 22.545 0.613 0.680 142 100.0 142 ERRMC BURIED . . . . . . . . 24.085 0.677 0.725 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 20.413 0.529 0.615 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 20.664 0.540 0.622 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 19.482 0.493 0.587 103 100.0 103 ERRSC BURIED . . . . . . . . 22.809 0.623 0.687 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 21.878 0.587 0.659 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 21.260 0.563 0.641 219 100.0 219 ERRALL BURIED . . . . . . . . 23.487 0.652 0.707 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 2 13 33 40 40 DISTCA CA (P) 0.00 2.50 5.00 32.50 82.50 40 DISTCA CA (RMS) 0.00 1.99 2.35 3.87 6.29 DISTCA ALL (N) 0 1 14 68 214 303 303 DISTALL ALL (P) 0.00 0.33 4.62 22.44 70.63 303 DISTALL ALL (RMS) 0.00 1.99 2.60 3.88 6.56 DISTALL END of the results output