####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS113_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS113_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 68 - 89 4.88 10.70 LCS_AVERAGE: 51.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 74 - 87 1.99 10.50 LONGEST_CONTINUOUS_SEGMENT: 14 75 - 88 1.73 10.08 LCS_AVERAGE: 23.50 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 77 - 87 0.98 10.53 LCS_AVERAGE: 16.50 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 6 15 3 3 5 5 5 15 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT S 57 S 57 3 6 19 3 3 5 6 6 7 12 16 18 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT C 58 C 58 5 6 19 3 5 10 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT K 59 K 59 5 6 19 3 5 6 6 6 7 8 11 14 19 22 23 25 26 28 28 30 32 33 35 LCS_GDT G 60 G 60 5 6 19 3 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT R 61 R 61 5 6 19 3 5 6 11 11 14 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT C 62 C 62 5 6 19 3 5 6 6 7 11 14 14 17 20 20 24 25 27 28 30 31 32 33 35 LCS_GDT F 63 F 63 3 6 19 3 3 4 5 7 10 10 11 12 17 19 22 24 26 28 30 31 32 33 35 LCS_GDT E 64 E 64 4 6 19 3 4 5 5 6 10 10 11 19 20 20 22 24 26 28 30 31 32 33 35 LCS_GDT L 65 L 65 4 6 19 3 4 9 9 12 13 14 17 19 20 20 22 24 26 27 28 31 32 33 35 LCS_GDT Q 66 Q 66 4 6 19 3 9 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT E 67 E 67 4 6 19 3 4 5 5 7 10 10 11 12 16 21 24 25 27 28 30 31 32 33 35 LCS_GDT V 68 V 68 4 6 22 3 4 5 5 6 10 10 11 12 19 21 23 25 27 28 30 31 32 33 35 LCS_GDT G 69 G 69 3 5 22 3 3 4 5 6 10 12 14 16 19 22 23 25 27 28 30 31 32 33 35 LCS_GDT P 70 P 70 3 5 22 1 3 4 5 5 6 8 11 13 17 19 21 23 25 26 27 30 31 33 35 LCS_GDT P 71 P 71 3 5 22 3 3 4 5 5 6 6 9 13 17 19 20 23 25 26 27 30 31 31 33 LCS_GDT D 72 D 72 3 5 22 3 3 4 4 10 11 11 13 13 17 19 21 23 25 26 27 30 31 31 33 LCS_GDT C 73 C 73 3 5 22 3 3 4 4 7 10 10 11 12 17 19 21 23 25 26 27 30 31 32 35 LCS_GDT R 74 R 74 3 14 22 3 3 3 4 8 11 13 17 18 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT C 75 C 75 3 14 22 3 4 11 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT D 76 D 76 4 14 22 4 4 5 10 11 13 16 17 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT N 77 N 77 11 14 22 4 4 11 13 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT L 78 L 78 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT C 79 C 79 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT K 80 K 80 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT S 81 S 81 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT Y 82 Y 82 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT S 83 S 83 11 14 22 6 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT S 84 S 84 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT C 85 C 85 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT C 86 C 86 11 14 22 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT H 87 H 87 11 14 22 5 10 12 14 15 16 17 18 19 20 22 24 25 26 28 30 31 32 33 35 LCS_GDT D 88 D 88 8 14 22 3 7 9 11 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 LCS_GDT F 89 F 89 8 9 22 4 7 9 9 10 11 11 13 16 19 22 24 25 27 28 30 31 32 33 35 LCS_GDT D 90 D 90 8 9 19 4 7 9 9 10 11 11 13 13 17 19 21 23 25 28 30 31 32 33 35 LCS_GDT E 91 E 91 8 9 19 4 7 9 9 10 11 11 14 16 19 22 24 25 27 28 30 31 32 33 35 LCS_GDT L 92 L 92 8 9 19 4 7 9 9 10 11 11 13 13 17 19 21 25 27 28 30 31 32 33 35 LCS_GDT C 93 C 93 8 9 17 3 7 9 9 10 11 11 13 13 17 19 21 23 25 26 29 31 32 33 35 LCS_GDT L 94 L 94 8 9 17 3 7 9 9 10 11 11 13 13 15 16 20 23 25 26 27 29 29 33 35 LCS_GDT K 95 K 95 8 9 17 3 7 9 9 10 11 11 13 13 15 16 18 23 25 26 27 30 31 33 35 LCS_AVERAGE LCS_A: 30.33 ( 16.50 23.50 51.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 10 12 14 15 16 17 18 19 20 22 24 25 27 28 30 31 32 33 35 GDT PERCENT_AT 17.50 25.00 30.00 35.00 37.50 40.00 42.50 45.00 47.50 50.00 55.00 60.00 62.50 67.50 70.00 75.00 77.50 80.00 82.50 87.50 GDT RMS_LOCAL 0.24 0.58 0.80 1.04 1.32 1.56 1.82 2.08 2.33 2.70 3.04 3.73 3.85 4.71 4.70 5.23 5.43 5.54 5.69 6.39 GDT RMS_ALL_AT 10.46 10.50 10.38 10.37 10.25 10.01 9.89 9.82 9.75 9.68 9.69 9.21 9.17 8.08 8.50 8.20 8.09 8.15 8.24 7.78 # Checking swapping # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # possible swapping detected: F 89 F 89 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 4.164 0 0.313 0.313 5.842 29.048 29.048 LGA S 57 S 57 6.483 0 0.178 0.703 10.714 22.857 15.476 LGA C 58 C 58 2.006 0 0.608 0.707 3.726 55.595 57.540 LGA K 59 K 59 6.072 0 0.603 0.975 11.395 26.667 12.910 LGA G 60 G 60 1.028 0 0.255 0.255 2.671 73.214 73.214 LGA R 61 R 61 4.266 0 0.355 1.597 10.979 33.333 21.255 LGA C 62 C 62 8.071 0 0.201 0.258 10.029 11.667 8.016 LGA F 63 F 63 9.596 0 0.434 1.137 19.068 2.976 1.082 LGA E 64 E 64 7.923 0 0.263 1.167 12.647 3.690 2.222 LGA L 65 L 65 7.409 0 0.190 0.564 13.069 16.667 8.929 LGA Q 66 Q 66 1.278 0 0.126 1.107 7.504 56.429 43.386 LGA E 67 E 67 6.794 0 0.562 1.529 9.829 14.167 8.148 LGA V 68 V 68 10.870 0 0.509 0.595 14.760 0.714 0.408 LGA G 69 G 69 13.008 0 0.355 0.355 13.486 0.000 0.000 LGA P 70 P 70 17.245 0 0.099 0.251 19.640 0.000 0.000 LGA P 71 P 71 17.424 0 0.377 0.503 21.052 0.000 0.000 LGA D 72 D 72 16.586 3 0.584 0.609 17.848 0.000 0.000 LGA C 73 C 73 13.621 0 0.589 1.077 17.062 0.000 0.000 LGA R 74 R 74 6.458 0 0.637 1.269 12.860 20.357 10.952 LGA C 75 C 75 2.013 0 0.299 0.837 3.703 52.143 51.508 LGA D 76 D 76 5.271 0 0.545 0.817 9.662 37.500 21.190 LGA N 77 N 77 2.864 0 0.090 0.914 5.605 59.524 51.250 LGA L 78 L 78 1.194 0 0.305 1.295 7.112 83.690 60.298 LGA C 79 C 79 0.671 0 0.077 0.781 2.432 95.238 89.365 LGA K 80 K 80 0.383 0 0.051 0.937 6.943 95.238 66.614 LGA S 81 S 81 1.024 0 0.043 0.090 1.362 83.690 85.952 LGA Y 82 Y 82 1.244 0 0.102 0.591 2.374 79.286 75.119 LGA S 83 S 83 0.993 0 0.262 0.678 4.182 90.595 78.730 LGA S 84 S 84 0.678 0 0.374 0.785 3.844 88.452 79.762 LGA C 85 C 85 1.103 0 0.173 0.771 3.161 79.524 74.921 LGA C 86 C 86 1.397 0 0.151 0.175 1.851 77.143 80.079 LGA H 87 H 87 2.407 0 0.115 1.156 5.601 64.881 45.905 LGA D 88 D 88 2.843 0 0.459 0.857 6.762 42.381 36.310 LGA F 89 F 89 7.912 0 0.073 1.447 14.181 7.143 2.857 LGA D 90 D 90 14.174 0 0.107 1.106 16.303 0.000 0.000 LGA E 91 E 91 12.974 0 0.116 1.141 16.251 0.000 1.376 LGA L 92 L 92 13.383 0 0.223 1.454 17.284 0.000 0.000 LGA C 93 C 93 16.732 0 0.060 0.121 21.469 0.000 0.000 LGA L 94 L 94 21.982 0 0.163 0.695 24.593 0.000 0.000 LGA K 95 K 95 24.279 0 0.123 1.241 28.302 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 7.540 7.428 8.897 35.095 29.846 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 18 2.08 45.000 39.647 0.827 LGA_LOCAL RMSD: 2.077 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.823 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.540 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.332805 * X + -0.934810 * Y + -0.123978 * Z + -102.142403 Y_new = -0.611471 * X + 0.314015 * Y + -0.726291 * Z + -26.618881 Z_new = 0.717875 * X + -0.165904 * Y + -0.676115 * Z + -4.328770 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.069229 -0.800745 -2.900968 [DEG: -118.5581 -45.8793 -166.2132 ] ZXZ: -0.169071 2.313273 1.797913 [DEG: -9.6871 132.5408 103.0128 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS113_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS113_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 18 2.08 39.647 7.54 REMARK ---------------------------------------------------------- MOLECULE T0543TS113_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 350 N GLY 56 31.246 70.011 21.742 1.00 0.00 N ATOM 351 CA GLY 56 31.701 69.946 20.378 1.00 0.00 C ATOM 352 C GLY 56 30.607 69.835 19.247 1.00 0.00 C ATOM 353 O GLY 56 30.858 70.453 18.195 1.00 0.00 O ATOM 354 N SER 57 29.342 69.437 19.523 1.00 0.00 N ATOM 355 CA SER 57 28.371 69.335 18.420 1.00 0.00 C ATOM 356 C SER 57 27.423 70.567 18.368 1.00 0.00 C ATOM 357 O SER 57 26.416 70.638 19.086 1.00 0.00 O ATOM 358 CB SER 57 27.583 68.040 18.606 1.00 0.00 C ATOM 359 OG SER 57 27.123 67.641 19.882 1.00 0.00 O ATOM 360 N CYS 58 27.694 71.407 17.376 1.00 0.00 N ATOM 361 CA CYS 58 26.933 72.593 17.001 1.00 0.00 C ATOM 362 C CYS 58 26.209 72.214 15.680 1.00 0.00 C ATOM 363 O CYS 58 26.887 71.799 14.724 1.00 0.00 O ATOM 364 CB CYS 58 27.842 73.834 16.875 1.00 0.00 C ATOM 365 SG CYS 58 26.860 75.371 16.735 1.00 0.00 S ATOM 366 N LYS 59 24.886 72.173 15.645 1.00 0.00 N ATOM 367 CA LYS 59 24.074 71.731 14.489 1.00 0.00 C ATOM 368 C LYS 59 24.747 71.980 13.108 1.00 0.00 C ATOM 369 O LYS 59 24.787 71.011 12.345 1.00 0.00 O ATOM 370 CB LYS 59 22.692 72.387 14.698 1.00 0.00 C ATOM 371 CG LYS 59 22.645 73.927 14.679 1.00 0.00 C ATOM 372 CD LYS 59 21.256 74.460 15.067 1.00 0.00 C ATOM 373 CE LYS 59 21.166 75.984 15.180 1.00 0.00 C ATOM 374 NZ LYS 59 21.257 76.606 13.843 1.00 0.00 N ATOM 375 N GLY 60 25.091 73.239 12.716 1.00 0.00 N ATOM 376 CA GLY 60 25.798 73.493 11.470 1.00 0.00 C ATOM 377 C GLY 60 27.184 72.773 11.363 1.00 0.00 C ATOM 378 O GLY 60 27.509 72.246 10.293 1.00 0.00 O ATOM 379 N ARG 61 28.073 73.024 12.345 1.00 0.00 N ATOM 380 CA ARG 61 29.446 72.544 12.411 1.00 0.00 C ATOM 381 C ARG 61 29.599 70.983 12.363 1.00 0.00 C ATOM 382 O ARG 61 30.215 70.535 11.380 1.00 0.00 O ATOM 383 CB ARG 61 30.059 73.155 13.665 1.00 0.00 C ATOM 384 CG ARG 61 30.544 74.595 13.720 1.00 0.00 C ATOM 385 CD ARG 61 29.472 75.644 13.401 1.00 0.00 C ATOM 386 NE ARG 61 30.062 76.992 13.697 1.00 0.00 N ATOM 387 CZ ARG 61 29.350 78.151 13.575 1.00 0.00 C ATOM 388 NH1 ARG 61 28.043 78.117 13.192 1.00 0.00 H ATOM 389 NH2 ARG 61 29.964 79.343 13.827 1.00 0.00 H ATOM 390 N CYS 62 29.044 70.214 13.265 1.00 0.00 N ATOM 391 CA CYS 62 29.213 68.777 13.136 1.00 0.00 C ATOM 392 C CYS 62 27.912 68.219 12.490 1.00 0.00 C ATOM 393 O CYS 62 27.009 67.759 13.167 1.00 0.00 O ATOM 394 CB CYS 62 29.382 68.257 14.555 1.00 0.00 C ATOM 395 SG CYS 62 30.705 69.064 15.463 1.00 0.00 S ATOM 396 N PHE 63 28.007 68.070 11.196 1.00 0.00 N ATOM 397 CA PHE 63 26.884 67.643 10.314 1.00 0.00 C ATOM 398 C PHE 63 26.658 66.085 10.398 1.00 0.00 C ATOM 399 O PHE 63 25.565 65.706 10.827 1.00 0.00 O ATOM 400 CB PHE 63 27.035 68.240 8.864 1.00 0.00 C ATOM 401 CG PHE 63 28.300 67.758 8.139 1.00 0.00 C ATOM 402 CD1 PHE 63 28.261 66.677 7.238 1.00 0.00 C ATOM 403 CD2 PHE 63 29.523 68.430 8.318 1.00 0.00 C ATOM 404 CE1 PHE 63 29.421 66.236 6.588 1.00 0.00 C ATOM 405 CE2 PHE 63 30.686 67.995 7.669 1.00 0.00 C ATOM 406 CZ PHE 63 30.637 66.892 6.810 1.00 0.00 C ATOM 407 N GLU 64 27.730 65.274 10.033 1.00 0.00 N ATOM 408 CA GLU 64 27.535 63.800 10.204 1.00 0.00 C ATOM 409 C GLU 64 28.281 63.337 11.459 1.00 0.00 C ATOM 410 O GLU 64 29.456 62.960 11.367 1.00 0.00 O ATOM 411 CB GLU 64 27.918 63.043 8.889 1.00 0.00 C ATOM 412 CG GLU 64 27.496 61.555 9.040 1.00 0.00 C ATOM 413 CD GLU 64 27.548 60.838 7.696 1.00 0.00 C ATOM 414 OE1 GLU 64 28.673 60.680 7.156 1.00 0.00 O ATOM 415 OE2 GLU 64 26.458 60.421 7.225 1.00 0.00 O ATOM 416 N LEU 65 27.615 63.281 12.638 1.00 0.00 N ATOM 417 CA LEU 65 28.266 62.811 13.890 1.00 0.00 C ATOM 418 C LEU 65 27.403 61.826 14.752 1.00 0.00 C ATOM 419 O LEU 65 27.873 60.684 14.888 1.00 0.00 O ATOM 420 CB LEU 65 28.678 64.001 14.782 1.00 0.00 C ATOM 421 CG LEU 65 29.666 63.718 15.939 1.00 0.00 C ATOM 422 CD1 LEU 65 29.841 64.961 16.823 1.00 0.00 C ATOM 423 CD2 LEU 65 31.035 63.186 15.477 1.00 0.00 C ATOM 424 N GLN 66 26.099 62.095 15.020 1.00 0.00 N ATOM 425 CA GLN 66 25.290 61.266 15.899 1.00 0.00 C ATOM 426 C GLN 66 24.034 60.689 15.206 1.00 0.00 C ATOM 427 O GLN 66 23.165 61.429 14.733 1.00 0.00 O ATOM 428 CB GLN 66 24.906 62.095 17.131 1.00 0.00 C ATOM 429 CG GLN 66 26.013 62.664 17.991 1.00 0.00 C ATOM 430 CD GLN 66 25.451 63.492 19.157 1.00 0.00 C ATOM 431 OE1 GLN 66 24.362 63.225 19.670 1.00 0.00 O ATOM 432 NE2 GLN 66 26.217 64.527 19.588 1.00 0.00 N ATOM 433 N GLU 67 23.892 59.366 15.373 1.00 0.00 N ATOM 434 CA GLU 67 22.841 58.570 14.730 1.00 0.00 C ATOM 435 C GLU 67 21.382 59.035 15.107 1.00 0.00 C ATOM 436 O GLU 67 20.691 59.495 14.184 1.00 0.00 O ATOM 437 CB GLU 67 23.064 57.044 14.986 1.00 0.00 C ATOM 438 CG GLU 67 22.301 56.168 13.942 1.00 0.00 C ATOM 439 CD GLU 67 22.783 56.419 12.506 1.00 0.00 C ATOM 440 OE1 GLU 67 24.022 56.347 12.282 1.00 0.00 O ATOM 441 OE2 GLU 67 21.924 56.723 11.638 1.00 0.00 O ATOM 442 N VAL 68 20.938 59.013 16.393 1.00 0.00 N ATOM 443 CA VAL 68 19.577 59.331 16.799 1.00 0.00 C ATOM 444 C VAL 68 19.231 60.841 17.104 1.00 0.00 C ATOM 445 O VAL 68 18.427 61.357 16.346 1.00 0.00 O ATOM 446 CB VAL 68 19.161 58.464 17.995 1.00 0.00 C ATOM 447 CG1 VAL 68 17.669 58.681 18.372 1.00 0.00 C ATOM 448 CG2 VAL 68 19.394 56.977 17.670 1.00 0.00 C ATOM 449 N GLY 69 19.971 61.627 17.883 1.00 0.00 N ATOM 450 CA GLY 69 19.538 63.035 18.141 1.00 0.00 C ATOM 451 C GLY 69 19.695 63.882 16.810 1.00 0.00 C ATOM 452 O GLY 69 20.856 64.082 16.436 1.00 0.00 O ATOM 453 N PRO 70 18.678 64.527 16.161 1.00 0.00 N ATOM 454 CA PRO 70 19.014 65.258 14.959 1.00 0.00 C ATOM 455 C PRO 70 19.783 66.482 15.352 1.00 0.00 C ATOM 456 O PRO 70 19.755 66.880 16.511 1.00 0.00 O ATOM 457 CB PRO 70 17.711 65.696 14.224 1.00 0.00 C ATOM 458 CG PRO 70 16.745 64.524 14.663 1.00 0.00 C ATOM 459 CD PRO 70 17.237 64.099 16.054 1.00 0.00 C ATOM 460 N PRO 71 20.517 67.154 14.403 1.00 0.00 N ATOM 461 CA PRO 71 21.378 68.274 14.818 1.00 0.00 C ATOM 462 C PRO 71 20.792 69.353 15.789 1.00 0.00 C ATOM 463 O PRO 71 21.508 69.581 16.754 1.00 0.00 O ATOM 464 CB PRO 71 22.075 68.896 13.549 1.00 0.00 C ATOM 465 CG PRO 71 21.224 68.289 12.395 1.00 0.00 C ATOM 466 CD PRO 71 20.213 67.301 12.922 1.00 0.00 C ATOM 467 N ASP 72 19.600 69.998 15.626 1.00 0.00 N ATOM 468 CA ASP 72 19.190 71.054 16.550 1.00 0.00 C ATOM 469 C ASP 72 19.054 70.508 18.018 1.00 0.00 C ATOM 470 O ASP 72 19.704 71.054 18.914 1.00 0.00 O ATOM 471 CB ASP 72 17.891 71.779 16.116 1.00 0.00 C ATOM 472 CG ASP 72 17.941 72.330 14.724 1.00 0.00 C ATOM 473 OD1 ASP 72 17.943 71.519 13.759 1.00 0.00 O ATOM 474 OD2 ASP 72 17.939 73.579 14.598 1.00 0.00 O ATOM 475 N CYS 73 18.301 69.399 18.216 1.00 0.00 N ATOM 476 CA CYS 73 18.106 68.735 19.496 1.00 0.00 C ATOM 477 C CYS 73 19.444 68.351 20.171 1.00 0.00 C ATOM 478 O CYS 73 19.550 68.653 21.343 1.00 0.00 O ATOM 479 CB CYS 73 17.186 67.520 19.294 1.00 0.00 C ATOM 480 SG CYS 73 15.516 67.955 18.862 1.00 0.00 S ATOM 481 N ARG 74 20.327 67.531 19.570 1.00 0.00 N ATOM 482 CA ARG 74 21.622 67.159 20.188 1.00 0.00 C ATOM 483 C ARG 74 22.404 68.425 20.693 1.00 0.00 C ATOM 484 O ARG 74 23.049 68.297 21.731 1.00 0.00 O ATOM 485 CB ARG 74 22.478 66.251 19.285 1.00 0.00 C ATOM 486 CG ARG 74 22.998 66.805 17.940 1.00 0.00 C ATOM 487 CD ARG 74 23.688 65.691 17.138 1.00 0.00 C ATOM 488 NE ARG 74 24.198 66.228 15.829 1.00 0.00 N ATOM 489 CZ ARG 74 23.963 65.633 14.619 1.00 0.00 C ATOM 490 NH1 ARG 74 24.657 66.062 13.524 1.00 0.00 H ATOM 491 NH2 ARG 74 23.054 64.627 14.481 1.00 0.00 H ATOM 492 N CYS 75 22.495 69.539 19.913 1.00 0.00 N ATOM 493 CA CYS 75 23.194 70.799 20.284 1.00 0.00 C ATOM 494 C CYS 75 22.552 71.570 21.518 1.00 0.00 C ATOM 495 O CYS 75 23.354 72.117 22.284 1.00 0.00 O ATOM 496 CB CYS 75 23.259 71.775 19.106 1.00 0.00 C ATOM 497 SG CYS 75 24.267 73.278 19.367 1.00 0.00 S ATOM 498 N ASP 76 21.313 71.959 21.506 1.00 0.00 N ATOM 499 CA ASP 76 20.659 72.644 22.629 1.00 0.00 C ATOM 500 C ASP 76 19.967 71.694 23.689 1.00 0.00 C ATOM 501 O ASP 76 20.313 71.853 24.863 1.00 0.00 O ATOM 502 CB ASP 76 19.651 73.653 22.070 1.00 0.00 C ATOM 503 CG ASP 76 18.790 73.310 20.869 1.00 0.00 C ATOM 504 OD1 ASP 76 18.914 73.992 19.820 1.00 0.00 O ATOM 505 OD2 ASP 76 17.992 72.346 20.999 1.00 0.00 O ATOM 506 N ASN 77 18.995 70.813 23.343 1.00 0.00 N ATOM 507 CA ASN 77 18.275 69.967 24.337 1.00 0.00 C ATOM 508 C ASN 77 19.186 68.900 25.008 1.00 0.00 C ATOM 509 O ASN 77 19.158 68.774 26.232 1.00 0.00 O ATOM 510 CB ASN 77 17.033 69.373 23.716 1.00 0.00 C ATOM 511 CG ASN 77 16.029 70.280 23.098 1.00 0.00 C ATOM 512 OD1 ASN 77 15.648 70.099 21.938 1.00 0.00 O ATOM 513 ND2 ASN 77 15.571 71.301 23.867 1.00 0.00 N ATOM 514 N LEU 78 19.722 67.975 24.213 1.00 0.00 N ATOM 515 CA LEU 78 20.680 66.918 24.665 1.00 0.00 C ATOM 516 C LEU 78 21.949 67.526 25.362 1.00 0.00 C ATOM 517 O LEU 78 22.246 67.068 26.479 1.00 0.00 O ATOM 518 CB LEU 78 21.090 66.032 23.475 1.00 0.00 C ATOM 519 CG LEU 78 21.875 64.748 23.858 1.00 0.00 C ATOM 520 CD1 LEU 78 22.594 64.175 22.625 1.00 0.00 C ATOM 521 CD2 LEU 78 20.947 63.693 24.481 1.00 0.00 C ATOM 522 N CYS 79 22.640 68.521 24.757 1.00 0.00 N ATOM 523 CA CYS 79 23.778 69.227 25.358 1.00 0.00 C ATOM 524 C CYS 79 23.380 69.850 26.760 1.00 0.00 C ATOM 525 O CYS 79 24.144 69.616 27.692 1.00 0.00 O ATOM 526 CB CYS 79 24.196 70.326 24.357 1.00 0.00 C ATOM 527 SG CYS 79 25.492 69.821 23.206 1.00 0.00 S ATOM 528 N LYS 80 22.330 70.723 26.880 1.00 0.00 N ATOM 529 CA LYS 80 21.887 71.310 28.165 1.00 0.00 C ATOM 530 C LYS 80 21.757 70.226 29.313 1.00 0.00 C ATOM 531 O LYS 80 22.297 70.491 30.381 1.00 0.00 O ATOM 532 CB LYS 80 20.577 72.109 27.975 1.00 0.00 C ATOM 533 CG LYS 80 20.214 73.095 29.086 1.00 0.00 C ATOM 534 CD LYS 80 19.497 72.493 30.307 1.00 0.00 C ATOM 535 CE LYS 80 19.001 73.559 31.282 1.00 0.00 C ATOM 536 NZ LYS 80 18.317 72.915 32.419 1.00 0.00 N ATOM 537 N SER 81 20.966 69.129 29.165 1.00 0.00 N ATOM 538 CA SER 81 20.821 68.063 30.152 1.00 0.00 C ATOM 539 C SER 81 22.156 67.442 30.651 1.00 0.00 C ATOM 540 O SER 81 22.284 67.266 31.865 1.00 0.00 O ATOM 541 CB SER 81 19.760 67.062 29.664 1.00 0.00 C ATOM 542 OG SER 81 18.396 67.514 29.500 1.00 0.00 O ATOM 543 N TYR 82 23.157 67.141 29.784 1.00 0.00 N ATOM 544 CA TYR 82 24.473 66.656 30.113 1.00 0.00 C ATOM 545 C TYR 82 25.495 67.787 30.566 1.00 0.00 C ATOM 546 O TYR 82 26.700 67.499 30.650 1.00 0.00 O ATOM 547 CB TYR 82 25.074 65.843 28.973 1.00 0.00 C ATOM 548 CG TYR 82 24.278 64.693 28.480 1.00 0.00 C ATOM 549 CD1 TYR 82 23.642 63.802 29.364 1.00 0.00 C ATOM 550 CD2 TYR 82 24.205 64.438 27.099 1.00 0.00 C ATOM 551 CE1 TYR 82 22.933 62.693 28.875 1.00 0.00 C ATOM 552 CE2 TYR 82 23.511 63.325 26.611 1.00 0.00 C ATOM 553 CZ TYR 82 22.869 62.456 27.497 1.00 0.00 C ATOM 554 OH TYR 82 22.164 61.342 26.995 1.00 0.00 H ATOM 555 N SER 83 25.072 69.059 30.808 1.00 0.00 N ATOM 556 CA SER 83 25.908 70.214 31.168 1.00 0.00 C ATOM 557 C SER 83 27.113 70.466 30.191 1.00 0.00 C ATOM 558 O SER 83 28.096 71.086 30.633 1.00 0.00 O ATOM 559 CB SER 83 26.396 70.006 32.607 1.00 0.00 C ATOM 560 OG SER 83 27.307 68.959 32.855 1.00 0.00 O ATOM 561 N SER 84 26.998 70.160 28.912 1.00 0.00 N ATOM 562 CA SER 84 28.013 70.424 27.922 1.00 0.00 C ATOM 563 C SER 84 27.262 70.994 26.681 1.00 0.00 C ATOM 564 O SER 84 27.006 70.220 25.760 1.00 0.00 O ATOM 565 CB SER 84 28.841 69.079 27.769 1.00 0.00 C ATOM 566 OG SER 84 29.813 68.997 28.924 1.00 0.00 O ATOM 567 N CYS 85 27.508 72.276 26.516 1.00 0.00 N ATOM 568 CA CYS 85 26.978 73.115 25.415 1.00 0.00 C ATOM 569 C CYS 85 28.019 74.215 25.050 1.00 0.00 C ATOM 570 O CYS 85 28.402 75.044 25.867 1.00 0.00 O ATOM 571 CB CYS 85 25.605 73.648 25.890 1.00 0.00 C ATOM 572 SG CYS 85 25.570 74.518 27.480 1.00 0.00 S ATOM 573 N CYS 86 28.308 74.269 23.748 1.00 0.00 N ATOM 574 CA CYS 86 29.236 75.206 23.140 1.00 0.00 C ATOM 575 C CYS 86 28.657 76.603 22.974 1.00 0.00 C ATOM 576 O CYS 86 27.649 76.745 22.278 1.00 0.00 O ATOM 577 CB CYS 86 29.754 74.744 21.773 1.00 0.00 C ATOM 578 SG CYS 86 30.677 73.192 21.849 1.00 0.00 S ATOM 579 N HIS 87 29.175 77.575 23.742 1.00 0.00 N ATOM 580 CA HIS 87 28.706 78.954 23.532 1.00 0.00 C ATOM 581 C HIS 87 29.218 79.468 22.120 1.00 0.00 C ATOM 582 O HIS 87 28.386 79.937 21.342 1.00 0.00 O ATOM 583 CB HIS 87 29.092 79.859 24.719 1.00 0.00 C ATOM 584 CG HIS 87 30.561 79.930 25.044 1.00 0.00 C ATOM 585 ND1 HIS 87 31.413 80.939 24.653 1.00 0.00 N ATOM 586 CD2 HIS 87 31.306 79.095 25.818 1.00 0.00 C ATOM 587 CE1 HIS 87 32.619 80.672 25.211 1.00 0.00 C ATOM 588 NE2 HIS 87 32.606 79.561 25.919 1.00 0.00 N ATOM 589 N ASP 88 30.536 79.447 21.804 1.00 0.00 N ATOM 590 CA ASP 88 31.135 79.812 20.518 1.00 0.00 C ATOM 591 C ASP 88 32.128 78.691 20.085 1.00 0.00 C ATOM 592 O ASP 88 33.165 78.490 20.728 1.00 0.00 O ATOM 593 CB ASP 88 31.827 81.175 20.601 1.00 0.00 C ATOM 594 CG ASP 88 30.924 82.300 21.033 1.00 0.00 C ATOM 595 OD1 ASP 88 30.334 82.956 20.137 1.00 0.00 O ATOM 596 OD2 ASP 88 30.829 82.532 22.269 1.00 0.00 O ATOM 597 N PHE 89 31.895 78.200 18.865 1.00 0.00 N ATOM 598 CA PHE 89 32.629 77.070 18.275 1.00 0.00 C ATOM 599 C PHE 89 34.182 77.314 18.131 1.00 0.00 C ATOM 600 O PHE 89 34.922 76.535 18.745 1.00 0.00 O ATOM 601 CB PHE 89 31.999 76.705 16.924 1.00 0.00 C ATOM 602 CG PHE 89 32.573 75.425 16.343 1.00 0.00 C ATOM 603 CD1 PHE 89 32.166 74.170 16.831 1.00 0.00 C ATOM 604 CD2 PHE 89 33.511 75.476 15.297 1.00 0.00 C ATOM 605 CE1 PHE 89 32.685 72.995 16.278 1.00 0.00 C ATOM 606 CE2 PHE 89 34.036 74.299 14.751 1.00 0.00 C ATOM 607 CZ PHE 89 33.623 73.060 15.247 1.00 0.00 C ATOM 608 N ASP 90 34.663 78.319 17.398 1.00 0.00 N ATOM 609 CA ASP 90 36.081 78.578 17.161 1.00 0.00 C ATOM 610 C ASP 90 36.945 78.516 18.463 1.00 0.00 C ATOM 611 O ASP 90 37.858 77.703 18.470 1.00 0.00 O ATOM 612 CB ASP 90 36.180 79.951 16.498 1.00 0.00 C ATOM 613 CG ASP 90 35.448 80.048 15.179 1.00 0.00 C ATOM 614 OD1 ASP 90 34.190 80.066 15.253 1.00 0.00 O ATOM 615 OD2 ASP 90 36.096 80.095 14.100 1.00 0.00 O ATOM 616 N GLU 91 36.647 79.275 19.545 1.00 0.00 N ATOM 617 CA GLU 91 37.359 79.286 20.813 1.00 0.00 C ATOM 618 C GLU 91 37.310 77.926 21.599 1.00 0.00 C ATOM 619 O GLU 91 38.390 77.496 22.025 1.00 0.00 O ATOM 620 CB GLU 91 36.853 80.508 21.616 1.00 0.00 C ATOM 621 CG GLU 91 35.470 80.357 22.306 1.00 0.00 C ATOM 622 CD GLU 91 35.108 81.639 23.059 1.00 0.00 C ATOM 623 OE1 GLU 91 34.129 82.302 22.627 1.00 0.00 O ATOM 624 OE2 GLU 91 35.791 81.954 24.066 1.00 0.00 O ATOM 625 N LEU 92 36.117 77.298 21.824 1.00 0.00 N ATOM 626 CA LEU 92 36.012 76.018 22.591 1.00 0.00 C ATOM 627 C LEU 92 36.940 74.923 21.918 1.00 0.00 C ATOM 628 O LEU 92 37.819 74.402 22.621 1.00 0.00 O ATOM 629 CB LEU 92 34.566 75.529 22.748 1.00 0.00 C ATOM 630 CG LEU 92 34.300 74.266 23.591 1.00 0.00 C ATOM 631 CD1 LEU 92 34.963 74.325 24.976 1.00 0.00 C ATOM 632 CD2 LEU 92 34.598 72.926 22.886 1.00 0.00 C ATOM 633 N CYS 93 36.740 74.546 20.630 1.00 0.00 N ATOM 634 CA CYS 93 37.571 73.607 19.881 1.00 0.00 C ATOM 635 C CYS 93 39.049 74.108 19.683 1.00 0.00 C ATOM 636 O CYS 93 39.943 73.274 19.892 1.00 0.00 O ATOM 637 CB CYS 93 36.880 73.378 18.519 1.00 0.00 C ATOM 638 SG CYS 93 35.376 72.405 18.693 1.00 0.00 S ATOM 639 N LEU 94 39.324 75.394 19.342 1.00 0.00 N ATOM 640 CA LEU 94 40.709 75.894 19.162 1.00 0.00 C ATOM 641 C LEU 94 41.474 76.155 20.525 1.00 0.00 C ATOM 642 O LEU 94 42.544 76.757 20.460 1.00 0.00 O ATOM 643 CB LEU 94 40.699 77.154 18.258 1.00 0.00 C ATOM 644 CG LEU 94 42.039 77.471 17.533 1.00 0.00 C ATOM 645 CD1 LEU 94 41.926 78.808 16.782 1.00 0.00 C ATOM 646 CD2 LEU 94 42.474 76.363 16.556 1.00 0.00 C ATOM 647 N LYS 95 40.935 75.789 21.729 1.00 0.00 N ATOM 648 CA LYS 95 41.608 75.922 23.017 1.00 0.00 C ATOM 649 C LYS 95 42.995 75.233 22.856 1.00 0.00 C ATOM 650 O LYS 95 43.069 73.989 22.802 1.00 0.00 O ATOM 651 CB LYS 95 40.754 75.351 24.182 1.00 0.00 C ATOM 652 CG LYS 95 41.360 75.659 25.561 1.00 0.00 C ATOM 653 CD LYS 95 40.438 75.172 26.692 1.00 0.00 C ATOM 654 CE LYS 95 40.861 75.615 28.097 1.00 0.00 C ATOM 655 NZ LYS 95 42.138 74.980 28.481 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 67.73 44.9 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 66.69 44.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 70.31 45.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.58 38.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 93.89 37.1 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 92.83 36.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 91.99 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.06 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 51.75 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 80.51 44.4 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 43.57 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 76.10 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 80.18 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 61.91 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 112.44 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 63.33 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 63.33 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 65.58 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 53.41 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.54 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.54 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1885 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.01 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.13 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.70 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.14 142 100.0 142 CRMSMC BURIED . . . . . . . . 6.41 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.44 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 10.19 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.25 103 100.0 103 CRMSSC BURIED . . . . . . . . 7.98 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.98 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.58 219 100.0 219 CRMSALL BURIED . . . . . . . . 7.19 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.961 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 7.403 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 5.795 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.074 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 7.502 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 5.968 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.743 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 9.469 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 10.645 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 7.418 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.218 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 8.820 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 6.650 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 11 33 40 40 DISTCA CA (P) 0.00 0.00 5.00 27.50 82.50 40 DISTCA CA (RMS) 0.00 0.00 2.54 3.68 6.35 DISTCA ALL (N) 0 0 11 62 211 303 303 DISTALL ALL (P) 0.00 0.00 3.63 20.46 69.64 303 DISTALL ALL (RMS) 0.00 0.00 2.57 3.80 6.58 DISTALL END of the results output