####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS110_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS110_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 2.93 2.93 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 42 98 - 139 1.87 3.00 LONGEST_CONTINUOUS_SEGMENT: 42 99 - 140 1.92 3.00 LCS_AVERAGE: 89.63 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 115 - 139 0.83 3.33 LCS_AVERAGE: 40.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 4 45 3 3 3 3 4 4 6 6 6 6 11 35 38 42 42 45 45 45 45 45 LCS_GDT A 97 A 97 3 5 45 3 3 3 4 5 5 6 8 12 35 37 41 43 43 44 45 45 45 45 45 LCS_GDT R 98 R 98 3 42 45 3 3 3 4 5 5 8 12 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 99 G 99 12 42 45 3 3 10 26 36 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT W 100 W 100 12 42 45 5 12 22 30 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 101 E 101 12 42 45 10 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 102 C 102 12 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT T 103 T 103 12 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT K 104 K 104 12 42 45 7 19 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT D 105 D 105 12 42 45 4 16 25 33 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT R 106 R 106 12 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 107 C 107 12 42 45 9 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 108 G 108 12 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 109 E 109 12 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT V 110 V 110 12 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT R 111 R 111 12 42 45 3 5 11 13 23 38 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT N 112 N 112 8 42 45 3 18 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 113 E 113 8 42 45 3 11 16 24 32 38 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 114 E 114 10 42 45 3 8 23 31 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT N 115 N 115 25 42 45 3 19 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT A 116 A 116 25 42 45 8 23 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 117 C 117 25 42 45 10 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT H 118 H 118 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 119 C 119 25 42 45 7 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT S 120 S 120 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 121 E 121 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT D 122 D 122 25 42 45 12 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 123 C 123 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT L 124 L 124 25 42 45 7 23 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT S 125 S 125 25 42 45 7 23 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT R 126 R 126 25 42 45 4 19 30 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 127 G 127 25 42 45 4 17 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT D 128 D 128 25 42 45 9 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 129 C 129 25 42 45 8 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 130 C 130 25 42 45 8 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT T 131 T 131 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT N 132 N 132 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT Y 133 Y 133 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT Q 134 Q 134 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT V 135 V 135 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT V 136 V 136 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT C 137 C 137 25 42 45 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT K 138 K 138 25 42 45 10 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT G 139 G 139 25 42 45 3 24 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 LCS_GDT E 140 E 140 3 42 45 0 3 3 4 5 5 8 37 40 41 43 43 43 43 44 45 45 45 45 45 LCS_AVERAGE LCS_A: 76.69 ( 40.44 89.63 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 25 31 35 37 39 41 41 41 42 43 43 43 43 44 45 45 45 45 45 GDT PERCENT_AT 31.11 55.56 68.89 77.78 82.22 86.67 91.11 91.11 91.11 93.33 95.56 95.56 95.56 95.56 97.78 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.38 0.64 0.84 1.04 1.20 1.39 1.64 1.64 1.64 1.87 2.10 2.10 2.10 2.10 2.43 2.93 2.93 2.93 2.93 2.93 GDT RMS_ALL_AT 3.19 3.25 3.31 3.21 3.18 3.08 3.01 3.01 3.01 3.00 3.00 3.00 3.00 3.00 2.97 2.93 2.93 2.93 2.93 2.93 # Checking swapping # possible swapping detected: E 101 E 101 # possible swapping detected: E 109 E 109 # possible swapping detected: E 113 E 113 # possible swapping detected: D 128 D 128 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 11.649 0 0.650 0.647 13.360 0.476 0.680 LGA A 97 A 97 8.667 0 0.326 0.555 10.567 3.810 3.048 LGA R 98 R 98 6.095 0 0.615 1.117 16.598 17.500 7.273 LGA G 99 G 99 2.884 0 0.082 0.082 3.527 51.905 51.905 LGA W 100 W 100 2.748 0 0.408 1.267 7.507 59.048 38.707 LGA E 101 E 101 1.260 0 0.137 0.772 2.376 79.286 76.772 LGA C 102 C 102 0.527 0 0.086 0.804 2.707 88.214 83.413 LGA T 103 T 103 1.385 0 0.054 0.158 2.526 79.286 73.129 LGA K 104 K 104 1.466 0 0.060 0.889 5.394 77.143 65.661 LGA D 105 D 105 2.435 0 0.086 0.993 6.866 68.810 51.071 LGA R 106 R 106 0.876 0 0.335 1.014 6.838 83.810 64.675 LGA C 107 C 107 1.401 0 0.520 0.893 4.221 64.048 64.603 LGA G 108 G 108 0.778 0 0.210 0.210 0.837 90.476 90.476 LGA E 109 E 109 1.165 0 0.138 0.860 3.788 83.690 69.524 LGA V 110 V 110 0.987 0 0.698 1.448 4.141 77.619 71.701 LGA R 111 R 111 3.785 0 0.078 0.947 16.198 48.690 19.567 LGA N 112 N 112 1.414 0 0.114 0.944 5.647 71.071 54.643 LGA E 113 E 113 4.042 0 0.316 1.047 10.418 46.786 24.444 LGA E 114 E 114 2.739 0 0.307 0.612 9.015 65.357 37.513 LGA N 115 N 115 1.639 0 0.273 0.267 2.564 79.405 75.238 LGA A 116 A 116 1.831 0 0.082 0.094 2.444 72.857 71.238 LGA C 117 C 117 1.165 0 0.102 0.219 1.365 81.429 84.444 LGA H 118 H 118 0.917 0 0.093 1.113 3.123 88.214 78.524 LGA C 119 C 119 0.716 0 0.194 0.364 1.668 86.071 84.524 LGA S 120 S 120 0.396 0 0.035 0.096 0.680 100.000 98.413 LGA E 121 E 121 0.770 0 0.104 0.912 2.752 88.214 80.899 LGA D 122 D 122 0.275 0 0.140 1.209 4.547 97.619 79.524 LGA C 123 C 123 0.533 0 0.056 0.737 3.024 90.595 83.810 LGA L 124 L 124 1.672 0 0.124 1.430 4.840 69.524 67.381 LGA S 125 S 125 2.017 0 0.095 0.132 2.332 66.786 66.111 LGA R 126 R 126 2.208 0 0.284 1.386 3.226 68.810 71.255 LGA G 127 G 127 1.554 0 0.157 0.157 1.650 75.000 75.000 LGA D 128 D 128 1.147 0 0.075 0.900 2.967 79.286 74.167 LGA C 129 C 129 1.457 0 0.058 0.230 1.600 83.690 81.508 LGA C 130 C 130 0.925 0 0.088 0.212 1.515 85.952 83.016 LGA T 131 T 131 0.808 0 0.114 1.149 2.803 92.857 83.265 LGA N 132 N 132 0.174 0 0.409 1.426 4.392 88.810 76.786 LGA Y 133 Y 133 0.482 0 0.062 0.349 1.305 95.238 89.048 LGA Q 134 Q 134 0.917 0 0.077 0.375 2.751 88.214 78.042 LGA V 135 V 135 1.034 0 0.044 0.085 1.249 88.214 85.306 LGA V 136 V 136 0.423 0 0.081 0.120 0.650 97.619 97.279 LGA C 137 C 137 0.517 0 0.136 0.195 1.288 90.595 90.556 LGA K 138 K 138 1.233 0 0.072 0.165 5.084 81.548 62.381 LGA G 139 G 139 1.926 0 0.682 0.682 4.085 60.357 60.357 LGA E 140 E 140 6.971 0 0.392 1.146 13.344 12.619 6.085 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 2.927 2.964 4.353 72.590 65.177 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 41 1.64 81.111 85.702 2.355 LGA_LOCAL RMSD: 1.641 Number of atoms: 41 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 3.007 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.927 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.740364 * X + 0.540639 * Y + -0.399462 * Z + 32.737347 Y_new = -0.188358 * X + 0.403597 * Y + 0.895338 * Z + 22.486610 Z_new = 0.645277 * X + 0.738118 * Y + -0.196975 * Z + -64.043007 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.892466 -0.701386 1.831581 [DEG: -165.7261 -40.1864 104.9418 ] ZXZ: -2.721938 1.769068 0.718388 [DEG: -155.9556 101.3601 41.1606 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS110_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS110_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 41 1.64 85.702 2.93 REMARK ---------------------------------------------------------- MOLECULE T0543TS110_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 728 N THR 96 15.896 95.882 24.960 1.00 0.00 N ATOM 729 CA THR 96 14.798 95.057 24.350 1.00 0.00 C ATOM 730 C THR 96 15.185 93.568 24.473 1.00 0.00 C ATOM 731 O THR 96 16.296 93.070 24.298 1.00 0.00 O ATOM 732 CB THR 96 14.504 95.300 22.887 1.00 0.00 C ATOM 733 OG1 THR 96 14.208 96.671 22.669 1.00 0.00 O ATOM 734 CG2 THR 96 13.298 94.445 22.461 1.00 0.00 C ATOM 735 N ALA 97 14.227 92.680 24.808 1.00 0.00 N ATOM 736 CA ALA 97 14.339 91.239 24.673 1.00 0.00 C ATOM 737 C ALA 97 14.496 90.639 23.274 1.00 0.00 C ATOM 738 O ALA 97 15.332 90.941 22.424 1.00 0.00 O ATOM 739 CB ALA 97 13.650 90.652 25.860 1.00 0.00 C ATOM 740 N ARG 98 13.649 89.675 22.894 1.00 0.00 N ATOM 741 CA ARG 98 13.706 89.180 21.424 1.00 0.00 C ATOM 742 C ARG 98 12.342 88.560 21.022 1.00 0.00 C ATOM 743 O ARG 98 11.579 87.922 21.746 1.00 0.00 O ATOM 744 CB ARG 98 14.754 88.130 21.218 1.00 0.00 C ATOM 745 CG ARG 98 14.480 86.835 21.988 1.00 0.00 C ATOM 746 CD ARG 98 15.547 85.760 21.775 1.00 0.00 C ATOM 747 NE ARG 98 15.135 84.560 22.557 1.00 0.00 N ATOM 748 CZ ARG 98 15.860 83.407 22.471 1.00 0.00 C ATOM 749 NH1 ARG 98 16.895 83.630 21.610 1.00 0.00 N ATOM 750 NH2 ARG 98 15.268 82.481 23.280 1.00 0.00 N ATOM 751 N GLY 99 11.876 88.691 19.768 1.00 0.00 N ATOM 752 CA GLY 99 10.701 87.965 19.267 1.00 0.00 C ATOM 753 C GLY 99 10.928 87.065 18.034 1.00 0.00 C ATOM 754 O GLY 99 11.973 86.491 17.729 1.00 0.00 O ATOM 755 N TRP 100 9.935 86.837 17.156 1.00 0.00 N ATOM 756 CA TRP 100 10.049 85.753 16.132 1.00 0.00 C ATOM 757 C TRP 100 8.850 85.292 15.304 1.00 0.00 C ATOM 758 O TRP 100 7.916 84.567 15.642 1.00 0.00 O ATOM 759 CB TRP 100 10.381 84.318 16.435 1.00 0.00 C ATOM 760 CG TRP 100 10.439 83.429 15.216 1.00 0.00 C ATOM 761 CD1 TRP 100 11.473 83.210 14.352 1.00 0.00 C ATOM 762 CD2 TRP 100 9.384 82.608 14.695 1.00 0.00 C ATOM 763 NE1 TRP 100 11.189 82.366 13.379 1.00 0.00 N ATOM 764 CE2 TRP 100 9.892 81.954 13.543 1.00 0.00 C ATOM 765 CE3 TRP 100 8.053 82.355 15.091 1.00 0.00 C ATOM 766 CZ2 TRP 100 9.109 81.054 12.769 1.00 0.00 C ATOM 767 CZ3 TRP 100 7.261 81.453 14.320 1.00 0.00 C ATOM 768 CH2 TRP 100 7.801 80.818 13.174 1.00 0.00 C ATOM 769 N GLU 101 8.822 85.743 14.050 1.00 0.00 N ATOM 770 CA GLU 101 7.845 85.411 12.941 1.00 0.00 C ATOM 771 C GLU 101 8.290 86.102 11.655 1.00 0.00 C ATOM 772 O GLU 101 9.224 86.891 11.518 1.00 0.00 O ATOM 773 CB GLU 101 6.382 85.461 13.251 1.00 0.00 C ATOM 774 CG GLU 101 5.913 86.825 13.761 1.00 0.00 C ATOM 775 CD GLU 101 4.457 86.694 14.182 1.00 0.00 C ATOM 776 OE1 GLU 101 3.908 85.565 14.074 1.00 0.00 O ATOM 777 OE2 GLU 101 3.872 87.722 14.618 1.00 0.00 O ATOM 778 N CYS 102 7.596 85.835 10.537 1.00 0.00 N ATOM 779 CA CYS 102 8.041 86.322 9.189 1.00 0.00 C ATOM 780 C CYS 102 7.341 87.622 8.820 1.00 0.00 C ATOM 781 O CYS 102 6.365 88.138 9.364 1.00 0.00 O ATOM 782 CB CYS 102 7.767 85.186 8.250 1.00 0.00 C ATOM 783 SG CYS 102 6.378 84.936 8.091 1.00 0.00 S ATOM 784 N THR 103 7.835 88.290 7.786 1.00 0.00 N ATOM 785 CA THR 103 7.217 89.592 7.322 1.00 0.00 C ATOM 786 C THR 103 7.176 89.543 5.798 1.00 0.00 C ATOM 787 O THR 103 7.792 88.774 5.061 1.00 0.00 O ATOM 788 CB THR 103 7.946 90.816 7.824 1.00 0.00 C ATOM 789 OG1 THR 103 9.267 90.846 7.302 1.00 0.00 O ATOM 790 CG2 THR 103 8.008 90.778 9.360 1.00 0.00 C ATOM 791 N LYS 104 6.388 90.429 5.168 1.00 0.00 N ATOM 792 CA LYS 104 6.286 90.463 3.710 1.00 0.00 C ATOM 793 C LYS 104 7.540 90.963 3.014 1.00 0.00 C ATOM 794 O LYS 104 7.964 90.601 1.919 1.00 0.00 O ATOM 795 CB LYS 104 5.094 91.295 3.333 1.00 0.00 C ATOM 796 CG LYS 104 4.828 91.333 1.827 1.00 0.00 C ATOM 797 CD LYS 104 4.365 89.993 1.252 1.00 0.00 C ATOM 798 CE LYS 104 3.986 90.058 -0.229 1.00 0.00 C ATOM 799 NZ LYS 104 3.506 88.736 -0.688 1.00 0.00 N ATOM 800 N ASP 105 8.282 91.897 3.640 1.00 0.00 N ATOM 801 CA ASP 105 9.496 92.393 3.045 1.00 0.00 C ATOM 802 C ASP 105 10.749 91.658 3.527 1.00 0.00 C ATOM 803 O ASP 105 11.901 91.789 3.118 1.00 0.00 O ATOM 804 CB ASP 105 9.710 93.806 3.466 1.00 0.00 C ATOM 805 CG ASP 105 8.568 94.642 2.905 1.00 0.00 C ATOM 806 OD1 ASP 105 8.265 94.491 1.692 1.00 0.00 O ATOM 807 OD2 ASP 105 7.984 95.443 3.684 1.00 0.00 O ATOM 808 N ARG 106 10.612 90.765 4.501 1.00 0.00 N ATOM 809 CA ARG 106 11.642 89.856 4.880 1.00 0.00 C ATOM 810 C ARG 106 11.187 88.514 4.322 1.00 0.00 C ATOM 811 O ARG 106 10.986 87.465 4.933 1.00 0.00 O ATOM 812 CB ARG 106 11.464 89.436 6.311 1.00 0.00 C ATOM 813 CG ARG 106 11.538 90.599 7.302 1.00 0.00 C ATOM 814 CD ARG 106 12.910 91.275 7.353 1.00 0.00 C ATOM 815 NE ARG 106 13.883 90.273 7.871 1.00 0.00 N ATOM 816 CZ ARG 106 15.224 90.512 7.778 1.00 0.00 C ATOM 817 NH1 ARG 106 15.389 91.726 7.175 1.00 0.00 N ATOM 818 NH2 ARG 106 15.877 89.445 8.322 1.00 0.00 N ATOM 819 N CYS 107 10.974 88.444 3.025 1.00 0.00 N ATOM 820 CA CYS 107 10.356 87.237 2.454 1.00 0.00 C ATOM 821 C CYS 107 11.583 86.795 1.646 1.00 0.00 C ATOM 822 O CYS 107 12.235 85.761 1.777 1.00 0.00 O ATOM 823 CB CYS 107 9.047 87.385 1.744 1.00 0.00 C ATOM 824 SG CYS 107 8.558 86.150 1.242 1.00 0.00 S ATOM 825 N GLY 108 12.021 87.608 0.680 1.00 0.00 N ATOM 826 CA GLY 108 13.174 87.111 -0.082 1.00 0.00 C ATOM 827 C GLY 108 14.476 87.757 0.301 1.00 0.00 C ATOM 828 O GLY 108 15.333 88.212 -0.454 1.00 0.00 O ATOM 829 N GLU 109 14.749 87.859 1.594 1.00 0.00 N ATOM 830 CA GLU 109 16.000 88.487 2.088 1.00 0.00 C ATOM 831 C GLU 109 17.206 87.644 2.408 1.00 0.00 C ATOM 832 O GLU 109 17.216 86.520 2.907 1.00 0.00 O ATOM 833 CB GLU 109 15.555 89.025 3.412 1.00 0.00 C ATOM 834 CG GLU 109 16.640 89.818 4.144 1.00 0.00 C ATOM 835 CD GLU 109 16.048 90.333 5.448 1.00 0.00 C ATOM 836 OE1 GLU 109 14.852 90.037 5.711 1.00 0.00 O ATOM 837 OE2 GLU 109 16.784 91.028 6.198 1.00 0.00 O ATOM 838 N VAL 110 18.399 88.172 2.118 1.00 0.00 N ATOM 839 CA VAL 110 19.692 87.568 2.495 1.00 0.00 C ATOM 840 C VAL 110 20.319 87.600 3.853 1.00 0.00 C ATOM 841 O VAL 110 21.143 86.809 4.310 1.00 0.00 O ATOM 842 CB VAL 110 20.783 88.044 1.549 1.00 0.00 C ATOM 843 CG1 VAL 110 20.500 87.721 0.080 1.00 0.00 C ATOM 844 CG2 VAL 110 21.011 89.556 1.590 1.00 0.00 C ATOM 845 N ARG 111 19.970 88.565 4.670 1.00 0.00 N ATOM 846 CA ARG 111 20.649 88.930 5.932 1.00 0.00 C ATOM 847 C ARG 111 19.836 88.419 7.118 1.00 0.00 C ATOM 848 O ARG 111 18.626 88.511 7.313 1.00 0.00 O ATOM 849 CB ARG 111 20.622 90.416 6.123 1.00 0.00 C ATOM 850 CG ARG 111 21.402 91.183 5.053 1.00 0.00 C ATOM 851 CD ARG 111 21.292 92.703 5.186 1.00 0.00 C ATOM 852 NE ARG 111 22.080 93.307 4.076 1.00 0.00 N ATOM 853 CZ ARG 111 22.168 94.665 3.962 1.00 0.00 C ATOM 854 NH1 ARG 111 21.447 95.216 4.982 1.00 0.00 N ATOM 855 NH2 ARG 111 22.940 94.943 2.871 1.00 0.00 N ATOM 856 N ASN 112 20.549 87.791 8.058 1.00 0.00 N ATOM 857 CA ASN 112 19.972 87.164 9.241 1.00 0.00 C ATOM 858 C ASN 112 21.086 87.015 10.286 1.00 0.00 C ATOM 859 O ASN 112 22.291 86.839 10.111 1.00 0.00 O ATOM 860 CB ASN 112 19.472 85.768 9.096 1.00 0.00 C ATOM 861 CG ASN 112 20.631 84.899 8.629 1.00 0.00 C ATOM 862 OD1 ASN 112 21.541 84.591 9.396 1.00 0.00 O ATOM 863 ND2 ASN 112 20.659 84.456 7.344 1.00 0.00 N ATOM 864 N GLU 113 20.707 87.083 11.550 1.00 0.00 N ATOM 865 CA GLU 113 21.727 87.491 12.601 1.00 0.00 C ATOM 866 C GLU 113 21.194 86.806 13.847 1.00 0.00 C ATOM 867 O GLU 113 21.633 85.798 14.399 1.00 0.00 O ATOM 868 CB GLU 113 22.793 88.500 12.890 1.00 0.00 C ATOM 869 CG GLU 113 23.502 88.273 14.226 1.00 0.00 C ATOM 870 CD GLU 113 24.602 89.318 14.359 1.00 0.00 C ATOM 871 OE1 GLU 113 24.766 90.126 13.407 1.00 0.00 O ATOM 872 OE2 GLU 113 25.292 89.319 15.413 1.00 0.00 O ATOM 873 N GLU 114 20.118 87.369 14.408 1.00 0.00 N ATOM 874 CA GLU 114 19.328 86.750 15.443 1.00 0.00 C ATOM 875 C GLU 114 18.539 85.563 14.934 1.00 0.00 C ATOM 876 O GLU 114 18.734 84.376 15.189 1.00 0.00 O ATOM 877 CB GLU 114 18.654 87.847 16.223 1.00 0.00 C ATOM 878 CG GLU 114 17.809 87.334 17.392 1.00 0.00 C ATOM 879 CD GLU 114 17.204 88.539 18.099 1.00 0.00 C ATOM 880 OE1 GLU 114 16.526 89.348 17.412 1.00 0.00 O ATOM 881 OE2 GLU 114 17.412 88.666 19.335 1.00 0.00 O ATOM 882 N ASN 115 17.520 85.789 14.122 1.00 0.00 N ATOM 883 CA ASN 115 16.539 84.743 13.807 1.00 0.00 C ATOM 884 C ASN 115 16.546 83.218 13.910 1.00 0.00 C ATOM 885 O ASN 115 17.372 82.425 13.461 1.00 0.00 O ATOM 886 CB ASN 115 16.361 84.981 12.346 1.00 0.00 C ATOM 887 CG ASN 115 15.606 86.290 12.171 1.00 0.00 C ATOM 888 OD1 ASN 115 14.896 86.738 13.070 1.00 0.00 O ATOM 889 ND2 ASN 115 15.718 86.976 11.001 1.00 0.00 N ATOM 890 N ALA 116 15.528 82.676 14.573 1.00 0.00 N ATOM 891 CA ALA 116 15.350 81.230 14.687 1.00 0.00 C ATOM 892 C ALA 116 14.901 80.560 13.419 1.00 0.00 C ATOM 893 O ALA 116 15.231 79.447 13.011 1.00 0.00 O ATOM 894 CB ALA 116 14.368 80.915 15.782 1.00 0.00 C ATOM 895 N CYS 117 14.074 81.161 12.617 1.00 0.00 N ATOM 896 CA CYS 117 13.654 80.711 11.325 1.00 0.00 C ATOM 897 C CYS 117 14.089 81.697 10.291 1.00 0.00 C ATOM 898 O CYS 117 14.190 82.915 10.431 1.00 0.00 O ATOM 899 CB CYS 117 12.163 80.549 11.334 1.00 0.00 C ATOM 900 SG CYS 117 11.486 81.768 11.603 1.00 0.00 S ATOM 901 N HIS 118 14.405 81.238 9.091 1.00 0.00 N ATOM 902 CA HIS 118 14.753 82.179 7.997 1.00 0.00 C ATOM 903 C HIS 118 13.522 82.658 7.220 1.00 0.00 C ATOM 904 O HIS 118 12.463 82.069 7.010 1.00 0.00 O ATOM 905 CB HIS 118 15.686 81.347 7.172 1.00 0.00 C ATOM 906 CG HIS 118 16.961 81.012 7.887 1.00 0.00 C ATOM 907 ND1 HIS 118 18.032 81.875 7.999 1.00 0.00 N ATOM 908 CD2 HIS 118 17.343 79.890 8.540 1.00 0.00 C ATOM 909 CE1 HIS 118 18.996 81.323 8.671 1.00 0.00 C ATOM 910 NE2 HIS 118 18.611 80.110 9.018 1.00 0.00 N ATOM 911 N CYS 119 13.607 83.867 6.703 1.00 0.00 N ATOM 912 CA CYS 119 12.643 84.421 5.767 1.00 0.00 C ATOM 913 C CYS 119 13.428 84.661 4.470 1.00 0.00 C ATOM 914 O CYS 119 13.634 85.724 3.889 1.00 0.00 O ATOM 915 CB CYS 119 12.480 85.893 5.976 1.00 0.00 C ATOM 916 SG CYS 119 11.989 86.208 7.271 1.00 0.00 S ATOM 917 N SER 120 13.955 83.580 3.898 1.00 0.00 N ATOM 918 CA SER 120 14.636 83.644 2.623 1.00 0.00 C ATOM 919 C SER 120 14.165 82.513 1.735 1.00 0.00 C ATOM 920 O SER 120 13.588 81.485 2.087 1.00 0.00 O ATOM 921 CB SER 120 16.116 83.613 2.822 1.00 0.00 C ATOM 922 OG SER 120 16.505 82.376 3.399 1.00 0.00 O ATOM 923 N GLU 121 14.380 82.600 0.428 1.00 0.00 N ATOM 924 CA GLU 121 14.036 81.449 -0.423 1.00 0.00 C ATOM 925 C GLU 121 14.874 80.209 -0.152 1.00 0.00 C ATOM 926 O GLU 121 14.520 79.038 -0.275 1.00 0.00 O ATOM 927 CB GLU 121 14.186 81.892 -1.856 1.00 0.00 C ATOM 928 CG GLU 121 13.119 82.894 -2.299 1.00 0.00 C ATOM 929 CD GLU 121 13.443 83.326 -3.722 1.00 0.00 C ATOM 930 OE1 GLU 121 14.495 82.881 -4.252 1.00 0.00 O ATOM 931 OE2 GLU 121 12.640 84.109 -4.300 1.00 0.00 O ATOM 932 N ASP 122 16.133 80.363 0.264 1.00 0.00 N ATOM 933 CA ASP 122 16.935 79.203 0.587 1.00 0.00 C ATOM 934 C ASP 122 16.331 78.393 1.746 1.00 0.00 C ATOM 935 O ASP 122 16.494 77.200 1.999 1.00 0.00 O ATOM 936 CB ASP 122 18.326 79.669 0.851 1.00 0.00 C ATOM 937 CG ASP 122 18.949 80.069 -0.479 1.00 0.00 C ATOM 938 OD1 ASP 122 18.345 79.742 -1.536 1.00 0.00 O ATOM 939 OD2 ASP 122 20.035 80.705 -0.455 1.00 0.00 O ATOM 940 N CYS 123 15.533 79.017 2.599 1.00 0.00 N ATOM 941 CA CYS 123 14.886 78.199 3.631 1.00 0.00 C ATOM 942 C CYS 123 14.034 77.080 3.045 1.00 0.00 C ATOM 943 O CYS 123 13.865 75.945 3.490 1.00 0.00 O ATOM 944 CB CYS 123 14.207 79.141 4.571 1.00 0.00 C ATOM 945 SG CYS 123 15.130 79.900 5.340 1.00 0.00 S ATOM 946 N LEU 124 13.387 77.333 1.923 1.00 0.00 N ATOM 947 CA LEU 124 12.513 76.410 1.262 1.00 0.00 C ATOM 948 C LEU 124 13.263 75.218 0.691 1.00 0.00 C ATOM 949 O LEU 124 12.821 74.091 0.477 1.00 0.00 O ATOM 950 CB LEU 124 11.755 77.067 0.134 1.00 0.00 C ATOM 951 CG LEU 124 10.708 76.155 -0.509 1.00 0.00 C ATOM 952 CD1 LEU 124 9.618 75.656 0.438 1.00 0.00 C ATOM 953 CD2 LEU 124 9.919 76.786 -1.656 1.00 0.00 C ATOM 954 N SER 125 14.536 75.361 0.374 1.00 0.00 N ATOM 955 CA SER 125 15.308 74.246 -0.144 1.00 0.00 C ATOM 956 C SER 125 16.122 73.639 0.983 1.00 0.00 C ATOM 957 O SER 125 16.488 72.469 1.075 1.00 0.00 O ATOM 958 CB SER 125 16.222 74.696 -1.247 1.00 0.00 C ATOM 959 OG SER 125 17.177 75.618 -0.743 1.00 0.00 O ATOM 960 N ARG 126 16.499 74.428 2.000 1.00 0.00 N ATOM 961 CA ARG 126 17.206 73.871 3.131 1.00 0.00 C ATOM 962 C ARG 126 16.325 73.802 4.350 1.00 0.00 C ATOM 963 O ARG 126 16.626 74.156 5.489 1.00 0.00 O ATOM 964 CB ARG 126 18.087 74.941 3.709 1.00 0.00 C ATOM 965 CG ARG 126 19.140 75.461 2.728 1.00 0.00 C ATOM 966 CD ARG 126 19.951 76.640 3.267 1.00 0.00 C ATOM 967 NE ARG 126 20.715 76.155 4.450 1.00 0.00 N ATOM 968 CZ ARG 126 21.313 77.050 5.291 1.00 0.00 C ATOM 969 NH1 ARG 126 21.054 78.303 4.816 1.00 0.00 N ATOM 970 NH2 ARG 126 21.936 76.341 6.278 1.00 0.00 N ATOM 971 N GLY 127 15.093 73.322 4.242 1.00 0.00 N ATOM 972 CA GLY 127 14.129 73.440 5.318 1.00 0.00 C ATOM 973 C GLY 127 14.022 74.177 6.651 1.00 0.00 C ATOM 974 O GLY 127 13.782 73.705 7.761 1.00 0.00 O ATOM 975 N ASP 128 14.207 75.494 6.626 1.00 0.00 N ATOM 976 CA ASP 128 14.135 76.290 7.833 1.00 0.00 C ATOM 977 C ASP 128 13.060 77.357 7.692 1.00 0.00 C ATOM 978 O ASP 128 12.972 78.411 8.318 1.00 0.00 O ATOM 979 CB ASP 128 15.310 77.192 8.001 1.00 0.00 C ATOM 980 CG ASP 128 16.550 76.325 8.165 1.00 0.00 C ATOM 981 OD1 ASP 128 16.538 75.441 9.063 1.00 0.00 O ATOM 982 OD2 ASP 128 17.525 76.535 7.396 1.00 0.00 O ATOM 983 N CYS 129 12.090 77.173 6.807 1.00 0.00 N ATOM 984 CA CYS 129 11.032 78.120 6.632 1.00 0.00 C ATOM 985 C CYS 129 10.285 78.372 7.930 1.00 0.00 C ATOM 986 O CYS 129 9.993 77.546 8.793 1.00 0.00 O ATOM 987 CB CYS 129 10.177 77.566 5.531 1.00 0.00 C ATOM 988 SG CYS 129 10.843 77.559 4.278 1.00 0.00 S ATOM 989 N CYS 130 9.900 79.646 8.163 1.00 0.00 N ATOM 990 CA CYS 130 9.100 80.005 9.298 1.00 0.00 C ATOM 991 C CYS 130 7.761 79.294 9.317 1.00 0.00 C ATOM 992 O CYS 130 7.139 78.863 8.348 1.00 0.00 O ATOM 993 CB CYS 130 9.071 81.503 9.291 1.00 0.00 C ATOM 994 SG CYS 130 10.352 82.072 9.518 1.00 0.00 S ATOM 995 N THR 131 7.181 79.111 10.517 1.00 0.00 N ATOM 996 CA THR 131 5.895 78.467 10.632 1.00 0.00 C ATOM 997 C THR 131 4.880 79.078 9.688 1.00 0.00 C ATOM 998 O THR 131 4.026 78.492 9.025 1.00 0.00 O ATOM 999 CB THR 131 5.485 78.375 12.086 1.00 0.00 C ATOM 1000 OG1 THR 131 6.427 77.599 12.811 1.00 0.00 O ATOM 1001 CG2 THR 131 4.100 77.715 12.184 1.00 0.00 C ATOM 1002 N ASN 132 4.902 80.400 9.552 1.00 0.00 N ATOM 1003 CA ASN 132 3.999 81.156 8.718 1.00 0.00 C ATOM 1004 C ASN 132 4.655 81.014 7.355 1.00 0.00 C ATOM 1005 O ASN 132 4.237 80.366 6.398 1.00 0.00 O ATOM 1006 CB ASN 132 3.569 82.390 9.422 1.00 0.00 C ATOM 1007 CG ASN 132 2.677 81.981 10.585 1.00 0.00 C ATOM 1008 OD1 ASN 132 2.090 80.900 10.584 1.00 0.00 O ATOM 1009 ND2 ASN 132 2.526 82.824 11.642 1.00 0.00 N ATOM 1010 N TYR 133 5.803 81.632 7.117 1.00 0.00 N ATOM 1011 CA TYR 133 6.460 81.613 5.838 1.00 0.00 C ATOM 1012 C TYR 133 5.440 81.618 4.692 1.00 0.00 C ATOM 1013 O TYR 133 5.270 82.476 3.826 1.00 0.00 O ATOM 1014 CB TYR 133 7.709 80.814 5.624 1.00 0.00 C ATOM 1015 CG TYR 133 8.144 81.032 4.215 1.00 0.00 C ATOM 1016 CD1 TYR 133 8.794 82.221 3.862 1.00 0.00 C ATOM 1017 CD2 TYR 133 7.922 80.059 3.215 1.00 0.00 C ATOM 1018 CE1 TYR 133 9.222 82.462 2.543 1.00 0.00 C ATOM 1019 CE2 TYR 133 8.351 80.288 1.867 1.00 0.00 C ATOM 1020 CZ TYR 133 9.001 81.500 1.552 1.00 0.00 C ATOM 1021 OH TYR 133 9.427 81.765 0.269 1.00 0.00 O ATOM 1022 N GLN 134 4.629 80.572 4.607 1.00 0.00 N ATOM 1023 CA GLN 134 3.656 80.631 3.486 1.00 0.00 C ATOM 1024 C GLN 134 2.553 81.648 3.769 1.00 0.00 C ATOM 1025 O GLN 134 2.020 82.432 2.984 1.00 0.00 O ATOM 1026 CB GLN 134 3.183 79.217 3.293 1.00 0.00 C ATOM 1027 CG GLN 134 4.254 78.288 2.718 1.00 0.00 C ATOM 1028 CD GLN 134 3.684 76.877 2.683 1.00 0.00 C ATOM 1029 OE1 GLN 134 2.582 76.627 3.168 1.00 0.00 O ATOM 1030 NE2 GLN 134 4.404 75.878 2.107 1.00 0.00 N ATOM 1031 N VAL 135 2.093 81.718 5.004 1.00 0.00 N ATOM 1032 CA VAL 135 1.014 82.661 5.299 1.00 0.00 C ATOM 1033 C VAL 135 1.443 84.007 4.953 1.00 0.00 C ATOM 1034 O VAL 135 0.795 84.826 4.304 1.00 0.00 O ATOM 1035 CB VAL 135 0.560 82.471 6.737 1.00 0.00 C ATOM 1036 CG1 VAL 135 -0.429 83.538 7.210 1.00 0.00 C ATOM 1037 CG2 VAL 135 -0.145 81.135 6.982 1.00 0.00 C ATOM 1038 N VAL 136 2.609 84.422 5.346 1.00 0.00 N ATOM 1039 CA VAL 136 3.060 85.847 5.015 1.00 0.00 C ATOM 1040 C VAL 136 3.642 86.014 3.594 1.00 0.00 C ATOM 1041 O VAL 136 3.375 86.872 2.755 1.00 0.00 O ATOM 1042 CB VAL 136 4.020 86.333 6.087 1.00 0.00 C ATOM 1043 CG1 VAL 136 4.635 87.701 5.781 1.00 0.00 C ATOM 1044 CG2 VAL 136 3.369 86.487 7.464 1.00 0.00 C ATOM 1045 N CYS 137 4.553 85.124 3.211 1.00 0.00 N ATOM 1046 CA CYS 137 5.173 85.245 1.906 1.00 0.00 C ATOM 1047 C CYS 137 4.281 84.703 0.787 1.00 0.00 C ATOM 1048 O CYS 137 4.058 85.207 -0.313 1.00 0.00 O ATOM 1049 CB CYS 137 6.544 84.649 1.966 1.00 0.00 C ATOM 1050 SG CYS 137 7.426 85.395 2.791 1.00 0.00 S ATOM 1051 N LYS 138 3.661 83.548 1.007 1.00 0.00 N ATOM 1052 CA LYS 138 2.828 82.951 -0.021 1.00 0.00 C ATOM 1053 C LYS 138 1.461 83.594 -0.070 1.00 0.00 C ATOM 1054 O LYS 138 0.467 83.202 -0.680 1.00 0.00 O ATOM 1055 CB LYS 138 2.499 81.537 0.367 1.00 0.00 C ATOM 1056 CG LYS 138 3.725 80.625 0.445 1.00 0.00 C ATOM 1057 CD LYS 138 4.439 80.444 -0.897 1.00 0.00 C ATOM 1058 CE LYS 138 5.642 79.499 -0.827 1.00 0.00 C ATOM 1059 NZ LYS 138 6.229 79.328 -2.174 1.00 0.00 N ATOM 1060 N GLY 139 1.314 84.719 0.628 1.00 0.00 N ATOM 1061 CA GLY 139 -0.048 85.327 0.741 1.00 0.00 C ATOM 1062 C GLY 139 -0.588 85.810 -0.592 1.00 0.00 C ATOM 1063 O GLY 139 -0.007 85.867 -1.674 1.00 0.00 O ATOM 1064 N GLU 140 -1.836 86.226 -0.599 1.00 0.00 N ATOM 1065 CA GLU 140 -2.469 86.774 -1.823 1.00 0.00 C ATOM 1066 C GLU 140 -2.111 88.072 -2.479 1.00 0.00 C ATOM 1067 O GLU 140 -2.513 89.202 -2.211 1.00 0.00 O ATOM 1068 CB GLU 140 -3.900 87.087 -1.520 1.00 0.00 C ATOM 1069 CG GLU 140 -4.739 85.849 -1.195 1.00 0.00 C ATOM 1070 CD GLU 140 -6.154 86.311 -0.877 1.00 0.00 C ATOM 1071 OE1 GLU 140 -6.391 87.549 -0.890 1.00 0.00 O ATOM 1072 OE2 GLU 140 -7.019 85.432 -0.616 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 60.61 61.4 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 68.63 59.7 62 100.0 62 ARMSMC BURIED . . . . . . . . 34.64 65.4 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.24 51.3 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 86.49 50.0 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 85.43 46.2 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 84.85 61.5 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 80.53 60.9 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 64.15 66.7 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 80.41 56.2 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 80.81 71.4 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.01 46.2 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 74.29 50.0 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 63.12 50.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 95.87 33.3 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.41 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 73.41 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 80.42 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 56.84 50.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.93 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.93 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0651 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 3.33 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.54 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 3.08 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 3.50 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.67 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.50 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 5.74 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.70 112 100.0 112 CRMSSC BURIED . . . . . . . . 5.05 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.36 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.61 240 100.0 240 CRMSALL BURIED . . . . . . . . 3.75 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.168 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.491 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 1.372 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.294 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.650 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 1.438 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 4.135 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 4.320 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 4.461 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 3.445 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.136 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 3.444 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 2.433 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 10 31 38 41 44 45 45 DISTCA CA (P) 22.22 68.89 84.44 91.11 97.78 45 DISTCA CA (RMS) 0.84 1.34 1.60 1.77 2.47 DISTCA ALL (N) 40 166 242 286 329 345 345 DISTALL ALL (P) 11.59 48.12 70.14 82.90 95.36 345 DISTALL ALL (RMS) 0.79 1.33 1.76 2.17 3.37 DISTALL END of the results output