####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS110_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS110_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 56 - 77 4.89 11.91 LCS_AVERAGE: 53.19 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 80 - 91 1.96 13.91 LCS_AVERAGE: 20.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 61 - 65 0.94 16.29 LCS_AVERAGE: 9.88 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 5 22 3 3 6 9 10 14 14 15 17 18 20 21 23 24 26 27 29 29 29 31 LCS_GDT S 57 S 57 3 7 22 3 3 6 10 12 14 15 17 18 18 20 22 24 24 26 27 29 29 30 31 LCS_GDT C 58 C 58 4 7 22 3 5 7 10 12 14 15 17 18 18 20 22 24 24 26 27 29 29 30 31 LCS_GDT K 59 K 59 4 7 22 3 5 7 10 12 14 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT G 60 G 60 4 7 22 3 7 8 10 12 14 15 17 18 18 20 22 24 24 25 26 27 28 30 31 LCS_GDT R 61 R 61 5 7 22 4 7 8 10 12 12 15 17 18 18 20 22 24 24 25 26 28 29 30 31 LCS_GDT C 62 C 62 5 7 22 4 5 7 10 12 14 17 18 20 20 24 25 25 26 26 27 29 29 30 31 LCS_GDT F 63 F 63 5 7 22 4 5 7 11 13 15 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT E 64 E 64 5 7 22 4 5 6 8 10 13 17 18 20 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT L 65 L 65 5 7 22 3 3 6 10 13 15 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT Q 66 Q 66 4 7 22 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT E 67 E 67 4 7 22 4 7 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT V 68 V 68 4 7 22 3 3 4 5 6 9 13 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT G 69 G 69 3 7 22 3 5 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT P 70 P 70 4 6 22 2 3 4 7 9 10 15 16 18 21 24 25 25 26 26 27 29 29 30 31 LCS_GDT P 71 P 71 4 6 22 0 3 6 8 11 16 16 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT D 72 D 72 4 8 22 3 5 8 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT C 73 C 73 4 8 22 3 5 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT R 74 R 74 4 8 22 4 5 8 10 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT C 75 C 75 4 8 22 4 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT D 76 D 76 4 8 22 3 4 7 10 12 16 16 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT N 77 N 77 3 8 22 3 4 7 10 12 14 15 17 18 18 20 22 24 24 25 27 29 29 29 30 LCS_GDT L 78 L 78 3 8 21 4 6 8 10 12 14 15 17 18 18 20 22 24 24 26 26 27 29 30 31 LCS_GDT C 79 C 79 3 8 21 4 6 8 10 12 14 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT K 80 K 80 4 12 21 4 4 7 10 11 12 14 15 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT S 81 S 81 4 12 21 3 4 8 9 12 13 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT Y 82 Y 82 4 12 21 4 7 8 10 12 14 15 17 18 18 20 22 24 24 26 27 27 29 30 31 LCS_GDT S 83 S 83 4 12 21 4 6 7 10 12 13 15 17 18 18 20 22 24 24 25 27 27 28 30 31 LCS_GDT S 84 S 84 4 12 21 3 5 7 9 11 14 15 16 18 18 20 22 24 24 26 27 28 29 30 31 LCS_GDT C 85 C 85 4 12 20 3 6 8 10 12 13 15 17 18 18 22 22 24 26 26 27 28 29 30 31 LCS_GDT C 86 C 86 4 12 20 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT H 87 H 87 4 12 20 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 29 30 LCS_GDT D 88 D 88 4 12 20 3 6 8 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT F 89 F 89 4 12 20 3 6 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT D 90 D 90 4 12 20 3 7 8 10 11 14 15 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT E 91 E 91 4 12 20 3 7 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT L 92 L 92 4 4 20 4 7 8 10 12 13 17 18 20 21 24 25 25 26 26 27 29 29 30 31 LCS_GDT C 93 C 93 4 4 20 4 6 8 11 13 15 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT L 94 L 94 4 4 20 3 5 8 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_GDT K 95 K 95 3 4 20 0 3 6 10 12 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 LCS_AVERAGE LCS_A: 27.94 ( 9.88 20.75 53.19 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 7 8 11 13 16 17 19 21 22 24 25 25 26 26 27 29 29 30 31 GDT PERCENT_AT 10.00 17.50 20.00 27.50 32.50 40.00 42.50 47.50 52.50 55.00 60.00 62.50 62.50 65.00 65.00 67.50 72.50 72.50 75.00 77.50 GDT RMS_LOCAL 0.30 0.69 0.79 1.32 1.51 2.16 2.19 2.45 2.71 2.93 3.28 3.47 3.47 3.72 3.72 4.22 4.82 4.82 5.77 5.95 GDT RMS_ALL_AT 8.78 8.94 8.88 9.49 9.45 9.56 9.60 9.61 9.61 9.63 9.56 9.57 9.57 9.50 9.50 9.71 9.76 9.76 8.76 8.70 # Checking swapping # possible swapping detected: F 63 F 63 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 11.405 0 0.748 0.748 13.232 0.000 0.000 LGA S 57 S 57 10.779 0 0.563 0.949 11.155 0.000 0.079 LGA C 58 C 58 9.547 0 0.643 0.653 12.362 0.238 7.063 LGA K 59 K 59 16.430 0 0.588 0.734 25.503 0.000 0.000 LGA G 60 G 60 17.801 0 0.338 0.338 17.801 0.000 0.000 LGA R 61 R 61 11.874 0 0.566 1.093 13.976 0.476 0.433 LGA C 62 C 62 6.530 0 0.404 0.782 8.589 10.119 15.476 LGA F 63 F 63 3.120 0 0.189 0.258 4.459 41.905 52.294 LGA E 64 E 64 6.116 0 0.562 1.302 11.470 32.619 15.820 LGA L 65 L 65 2.650 0 0.571 1.401 5.313 50.238 43.095 LGA Q 66 Q 66 1.412 0 0.518 1.185 3.170 79.524 69.894 LGA E 67 E 67 0.318 0 0.447 1.230 3.891 80.119 71.534 LGA V 68 V 68 4.015 0 0.195 1.046 8.575 45.357 28.776 LGA G 69 G 69 2.732 0 0.506 0.506 3.547 53.690 53.690 LGA P 70 P 70 6.115 0 0.647 0.593 9.182 20.000 13.946 LGA P 71 P 71 4.626 0 0.235 0.585 7.169 39.405 29.456 LGA D 72 D 72 1.780 3 0.266 0.364 2.277 75.238 45.714 LGA C 73 C 73 0.986 0 0.437 0.785 3.153 83.810 79.286 LGA R 74 R 74 2.725 0 0.341 0.702 11.987 61.548 29.394 LGA C 75 C 75 0.856 0 0.618 0.723 4.589 73.690 63.889 LGA D 76 D 76 3.880 0 0.408 1.351 7.846 36.667 28.036 LGA N 77 N 77 9.557 0 0.702 0.746 13.002 1.905 1.012 LGA L 78 L 78 15.034 0 0.138 1.240 21.082 0.000 0.000 LGA C 79 C 79 12.541 0 0.579 0.681 16.386 0.000 0.079 LGA K 80 K 80 17.580 0 0.473 1.039 21.426 0.000 0.000 LGA S 81 S 81 23.234 0 0.600 0.792 25.556 0.000 0.000 LGA Y 82 Y 82 21.047 0 0.426 0.376 23.212 0.000 0.000 LGA S 83 S 83 18.380 0 0.294 0.696 19.977 0.000 0.000 LGA S 84 S 84 11.473 0 0.223 0.532 14.145 1.310 0.873 LGA C 85 C 85 8.233 0 0.518 1.107 9.942 10.952 8.016 LGA C 86 C 86 1.234 0 0.463 1.072 3.856 64.048 62.063 LGA H 87 H 87 0.816 0 0.649 0.982 5.967 83.810 61.619 LGA D 88 D 88 3.013 0 0.238 1.172 8.906 57.381 34.821 LGA F 89 F 89 1.370 0 0.544 0.693 5.938 77.143 53.896 LGA D 90 D 90 4.893 0 0.254 1.347 10.165 40.476 21.905 LGA E 91 E 91 1.746 0 0.566 0.850 8.507 59.762 36.138 LGA L 92 L 92 6.766 0 0.496 0.440 13.564 19.881 10.119 LGA C 93 C 93 2.938 0 0.597 0.887 4.525 59.762 53.413 LGA L 94 L 94 3.235 0 0.452 0.492 9.471 53.214 32.024 LGA K 95 K 95 2.963 0 0.276 1.351 11.707 52.143 34.815 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 8.421 8.264 9.063 34.161 26.467 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 19 2.45 40.000 37.172 0.746 LGA_LOCAL RMSD: 2.448 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.606 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 8.421 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.841320 * X + -0.217166 * Y + 0.494994 * Z + 55.800648 Y_new = 0.540331 * X + -0.363173 * Y + 0.759044 * Z + 40.081589 Z_new = 0.014930 * X + 0.906060 * Y + 0.422886 * Z + -88.503326 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.570691 -0.014930 1.134117 [DEG: 147.2897 -0.8554 64.9801 ] ZXZ: 2.563723 1.134169 0.016476 [DEG: 146.8905 64.9831 0.9440 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS110_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS110_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 19 2.45 37.172 8.42 REMARK ---------------------------------------------------------- MOLECULE T0543TS110_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 29.201 74.437 29.626 1.00 0.00 N ATOM 423 CA GLY 56 28.556 73.342 28.967 1.00 0.00 C ATOM 424 C GLY 56 27.611 74.451 28.492 1.00 0.00 C ATOM 425 O GLY 56 27.390 75.546 29.008 1.00 0.00 O ATOM 426 N SER 57 26.948 74.151 27.356 1.00 0.00 N ATOM 427 CA SER 57 26.023 75.053 26.779 1.00 0.00 C ATOM 428 C SER 57 24.880 75.427 25.842 1.00 0.00 C ATOM 429 O SER 57 24.676 76.500 25.275 1.00 0.00 O ATOM 430 CB SER 57 26.718 76.018 25.876 1.00 0.00 C ATOM 431 OG SER 57 27.329 75.325 24.799 1.00 0.00 O ATOM 432 N CYS 58 23.990 74.466 25.608 1.00 0.00 N ATOM 433 CA CYS 58 22.753 74.732 24.946 1.00 0.00 C ATOM 434 C CYS 58 21.924 74.064 26.038 1.00 0.00 C ATOM 435 O CYS 58 22.047 72.936 26.515 1.00 0.00 O ATOM 436 CB CYS 58 22.515 73.646 23.944 1.00 0.00 C ATOM 437 SG CYS 58 23.512 73.610 22.934 1.00 0.00 S ATOM 438 N LYS 59 20.940 74.815 26.529 1.00 0.00 N ATOM 439 CA LYS 59 20.262 74.401 27.749 1.00 0.00 C ATOM 440 C LYS 59 19.279 73.249 27.604 1.00 0.00 C ATOM 441 O LYS 59 19.169 72.258 28.324 1.00 0.00 O ATOM 442 CB LYS 59 19.618 75.604 28.374 1.00 0.00 C ATOM 443 CG LYS 59 18.928 75.303 29.706 1.00 0.00 C ATOM 444 CD LYS 59 18.227 76.516 30.321 1.00 0.00 C ATOM 445 CE LYS 59 19.187 77.637 30.729 1.00 0.00 C ATOM 446 NZ LYS 59 18.440 78.725 31.397 1.00 0.00 N ATOM 447 N GLY 60 18.431 73.311 26.582 1.00 0.00 N ATOM 448 CA GLY 60 17.507 72.315 26.198 1.00 0.00 C ATOM 449 C GLY 60 18.238 71.656 25.040 1.00 0.00 C ATOM 450 O GLY 60 17.907 71.658 23.855 1.00 0.00 O ATOM 451 N ARG 61 19.363 70.994 25.288 1.00 0.00 N ATOM 452 CA ARG 61 20.246 70.359 24.383 1.00 0.00 C ATOM 453 C ARG 61 19.319 70.687 23.168 1.00 0.00 C ATOM 454 O ARG 61 18.230 70.219 22.843 1.00 0.00 O ATOM 455 CB ARG 61 20.273 68.871 24.186 1.00 0.00 C ATOM 456 CG ARG 61 21.365 68.403 23.222 1.00 0.00 C ATOM 457 CD ARG 61 22.784 68.646 23.741 1.00 0.00 C ATOM 458 NE ARG 61 22.931 67.889 25.017 1.00 0.00 N ATOM 459 CZ ARG 61 23.197 66.551 24.990 1.00 0.00 C ATOM 460 NH1 ARG 61 23.275 66.167 23.682 1.00 0.00 N ATOM 461 NH2 ARG 61 23.278 66.117 26.281 1.00 0.00 N ATOM 462 N CYS 62 19.841 71.637 22.387 1.00 0.00 N ATOM 463 CA CYS 62 19.221 72.205 21.228 1.00 0.00 C ATOM 464 C CYS 62 18.548 70.876 20.878 1.00 0.00 C ATOM 465 O CYS 62 17.637 70.294 21.466 1.00 0.00 O ATOM 466 CB CYS 62 20.133 73.124 20.480 1.00 0.00 C ATOM 467 SG CYS 62 19.497 73.734 19.367 1.00 0.00 S ATOM 468 N PHE 63 19.020 70.278 19.788 1.00 0.00 N ATOM 469 CA PHE 63 18.387 69.137 19.170 1.00 0.00 C ATOM 470 C PHE 63 18.886 67.807 19.675 1.00 0.00 C ATOM 471 O PHE 63 18.378 66.698 19.517 1.00 0.00 O ATOM 472 CB PHE 63 18.594 69.079 17.686 1.00 0.00 C ATOM 473 CG PHE 63 17.869 70.233 17.087 1.00 0.00 C ATOM 474 CD1 PHE 63 18.533 71.424 16.714 1.00 0.00 C ATOM 475 CD2 PHE 63 16.480 70.157 16.875 1.00 0.00 C ATOM 476 CE1 PHE 63 17.832 72.522 16.138 1.00 0.00 C ATOM 477 CE2 PHE 63 15.753 71.243 16.300 1.00 0.00 C ATOM 478 CZ PHE 63 16.434 72.432 15.932 1.00 0.00 C ATOM 479 N GLU 64 19.993 67.803 20.371 1.00 0.00 N ATOM 480 CA GLU 64 20.624 66.551 20.826 1.00 0.00 C ATOM 481 C GLU 64 21.461 65.986 19.710 1.00 0.00 C ATOM 482 O GLU 64 22.643 65.653 19.758 1.00 0.00 O ATOM 483 CB GLU 64 20.149 65.369 21.630 1.00 0.00 C ATOM 484 CG GLU 64 19.829 65.711 23.087 1.00 0.00 C ATOM 485 CD GLU 64 19.331 64.445 23.769 1.00 0.00 C ATOM 486 OE1 GLU 64 19.274 63.388 23.085 1.00 0.00 O ATOM 487 OE2 GLU 64 19.002 64.518 24.983 1.00 0.00 O ATOM 488 N LEU 65 20.879 65.821 18.538 1.00 0.00 N ATOM 489 CA LEU 65 21.783 65.476 17.382 1.00 0.00 C ATOM 490 C LEU 65 23.180 64.864 17.534 1.00 0.00 C ATOM 491 O LEU 65 24.007 65.068 18.421 1.00 0.00 O ATOM 492 CB LEU 65 21.368 66.364 16.238 1.00 0.00 C ATOM 493 CG LEU 65 22.194 66.150 14.969 1.00 0.00 C ATOM 494 CD1 LEU 65 22.032 64.778 14.315 1.00 0.00 C ATOM 495 CD2 LEU 65 21.894 67.124 13.830 1.00 0.00 C ATOM 496 N GLN 66 23.547 63.999 16.582 1.00 0.00 N ATOM 497 CA GLN 66 24.904 63.599 16.340 1.00 0.00 C ATOM 498 C GLN 66 25.697 63.145 17.555 1.00 0.00 C ATOM 499 O GLN 66 26.891 63.325 17.789 1.00 0.00 O ATOM 500 CB GLN 66 26.157 64.266 15.845 1.00 0.00 C ATOM 501 CG GLN 66 26.043 64.793 14.413 1.00 0.00 C ATOM 502 CD GLN 66 27.381 65.409 14.030 1.00 0.00 C ATOM 503 OE1 GLN 66 28.368 65.282 14.754 1.00 0.00 O ATOM 504 NE2 GLN 66 27.487 66.112 12.871 1.00 0.00 N ATOM 505 N GLU 67 25.019 62.470 18.483 1.00 0.00 N ATOM 506 CA GLU 67 25.491 62.080 19.783 1.00 0.00 C ATOM 507 C GLU 67 26.150 61.044 20.690 1.00 0.00 C ATOM 508 O GLU 67 25.729 60.543 21.732 1.00 0.00 O ATOM 509 CB GLU 67 24.261 61.843 20.601 1.00 0.00 C ATOM 510 CG GLU 67 24.499 61.962 22.107 1.00 0.00 C ATOM 511 CD GLU 67 23.154 61.830 22.808 1.00 0.00 C ATOM 512 OE1 GLU 67 22.588 60.704 22.794 1.00 0.00 O ATOM 513 OE2 GLU 67 22.674 62.853 23.367 1.00 0.00 O ATOM 514 N VAL 68 27.341 60.646 20.274 1.00 0.00 N ATOM 515 CA VAL 68 28.138 59.659 20.994 1.00 0.00 C ATOM 516 C VAL 68 29.379 60.219 20.396 1.00 0.00 C ATOM 517 O VAL 68 29.539 60.589 19.234 1.00 0.00 O ATOM 518 CB VAL 68 27.992 58.146 20.848 1.00 0.00 C ATOM 519 CG1 VAL 68 28.290 57.639 19.435 1.00 0.00 C ATOM 520 CG2 VAL 68 28.925 57.352 21.764 1.00 0.00 C ATOM 521 N GLY 69 30.430 60.338 21.193 1.00 0.00 N ATOM 522 CA GLY 69 31.655 60.991 20.863 1.00 0.00 C ATOM 523 C GLY 69 31.549 62.499 20.842 1.00 0.00 C ATOM 524 O GLY 69 32.370 63.304 21.279 1.00 0.00 O ATOM 525 N PRO 70 30.462 63.045 20.300 1.00 0.00 N ATOM 526 CA PRO 70 30.291 64.466 20.402 1.00 0.00 C ATOM 527 C PRO 70 30.056 65.064 21.753 1.00 0.00 C ATOM 528 O PRO 70 29.854 66.255 21.985 1.00 0.00 O ATOM 529 CB PRO 70 29.077 64.763 19.632 1.00 0.00 C ATOM 530 CG PRO 70 28.677 63.646 18.667 1.00 0.00 C ATOM 531 CD PRO 70 29.052 62.246 19.160 1.00 0.00 C ATOM 532 N PRO 71 30.064 64.226 22.825 1.00 0.00 N ATOM 533 CA PRO 71 29.796 64.563 24.198 1.00 0.00 C ATOM 534 C PRO 71 30.724 65.695 24.655 1.00 0.00 C ATOM 535 O PRO 71 30.534 66.487 25.578 1.00 0.00 O ATOM 536 CB PRO 71 29.959 63.392 25.069 1.00 0.00 C ATOM 537 CG PRO 71 29.782 62.059 24.339 1.00 0.00 C ATOM 538 CD PRO 71 30.301 62.076 22.900 1.00 0.00 C ATOM 539 N ASP 72 31.885 65.857 23.980 1.00 0.00 N ATOM 540 CA ASP 72 32.718 66.979 24.275 1.00 0.00 C ATOM 541 C ASP 72 31.909 67.779 23.267 1.00 0.00 C ATOM 542 O ASP 72 32.058 67.816 22.046 1.00 0.00 O ATOM 543 CB ASP 72 34.019 66.781 23.572 1.00 0.00 C ATOM 544 CG ASP 72 34.989 67.844 24.069 1.00 0.00 C ATOM 545 OD1 ASP 72 34.555 69.016 24.219 1.00 0.00 O ATOM 546 OD2 ASP 72 36.177 67.496 24.304 1.00 0.00 O ATOM 547 N CYS 73 30.919 68.535 23.753 1.00 0.00 N ATOM 548 CA CYS 73 30.329 69.541 22.763 1.00 0.00 C ATOM 549 C CYS 73 29.908 69.634 21.307 1.00 0.00 C ATOM 550 O CYS 73 30.313 70.428 20.459 1.00 0.00 O ATOM 551 CB CYS 73 30.600 71.005 22.933 1.00 0.00 C ATOM 552 SG CYS 73 30.038 71.527 24.129 1.00 0.00 S ATOM 553 N ARG 74 29.002 68.773 20.867 1.00 0.00 N ATOM 554 CA ARG 74 28.592 68.742 19.470 1.00 0.00 C ATOM 555 C ARG 74 27.121 68.853 19.856 1.00 0.00 C ATOM 556 O ARG 74 26.240 67.998 19.781 1.00 0.00 O ATOM 557 CB ARG 74 28.344 67.360 18.937 1.00 0.00 C ATOM 558 CG ARG 74 29.607 66.500 18.861 1.00 0.00 C ATOM 559 CD ARG 74 30.635 67.009 17.847 1.00 0.00 C ATOM 560 NE ARG 74 29.969 67.048 16.515 1.00 0.00 N ATOM 561 CZ ARG 74 29.962 65.937 15.722 1.00 0.00 C ATOM 562 NH1 ARG 74 30.627 64.947 16.388 1.00 0.00 N ATOM 563 NH2 ARG 74 29.293 66.248 14.574 1.00 0.00 N ATOM 564 N CYS 75 26.755 70.037 20.337 1.00 0.00 N ATOM 565 CA CYS 75 25.393 70.319 20.814 1.00 0.00 C ATOM 566 C CYS 75 25.204 70.558 19.289 1.00 0.00 C ATOM 567 O CYS 75 25.780 71.318 18.512 1.00 0.00 O ATOM 568 CB CYS 75 25.265 71.714 21.337 1.00 0.00 C ATOM 569 SG CYS 75 23.951 72.007 21.786 1.00 0.00 S ATOM 570 N ASP 76 24.258 69.798 18.788 1.00 0.00 N ATOM 571 CA ASP 76 23.858 69.818 17.368 1.00 0.00 C ATOM 572 C ASP 76 22.942 70.504 16.337 1.00 0.00 C ATOM 573 O ASP 76 21.717 70.445 16.236 1.00 0.00 O ATOM 574 CB ASP 76 22.879 68.691 17.376 1.00 0.00 C ATOM 575 CG ASP 76 22.363 68.507 15.956 1.00 0.00 C ATOM 576 OD1 ASP 76 22.716 69.346 15.085 1.00 0.00 O ATOM 577 OD2 ASP 76 21.609 67.525 15.724 1.00 0.00 O ATOM 578 N ASN 77 23.551 71.265 15.434 1.00 0.00 N ATOM 579 CA ASN 77 22.863 71.876 14.327 1.00 0.00 C ATOM 580 C ASN 77 24.233 71.867 13.679 1.00 0.00 C ATOM 581 O ASN 77 25.167 72.632 13.912 1.00 0.00 O ATOM 582 CB ASN 77 22.579 73.325 14.474 1.00 0.00 C ATOM 583 CG ASN 77 21.639 73.736 13.349 1.00 0.00 C ATOM 584 OD1 ASN 77 21.577 73.087 12.306 1.00 0.00 O ATOM 585 ND2 ASN 77 20.855 74.837 13.501 1.00 0.00 N ATOM 586 N LEU 78 24.501 70.954 12.756 1.00 0.00 N ATOM 587 CA LEU 78 25.827 70.916 12.142 1.00 0.00 C ATOM 588 C LEU 78 27.106 71.342 12.712 1.00 0.00 C ATOM 589 O LEU 78 28.051 71.754 12.041 1.00 0.00 O ATOM 590 CB LEU 78 26.168 71.593 10.837 1.00 0.00 C ATOM 591 CG LEU 78 25.392 71.038 9.641 1.00 0.00 C ATOM 592 CD1 LEU 78 25.610 71.785 8.326 1.00 0.00 C ATOM 593 CD2 LEU 78 25.710 69.587 9.281 1.00 0.00 C ATOM 594 N CYS 79 27.322 71.301 14.039 1.00 0.00 N ATOM 595 CA CYS 79 28.530 71.752 14.681 1.00 0.00 C ATOM 596 C CYS 79 29.338 72.501 13.660 1.00 0.00 C ATOM 597 O CYS 79 29.994 72.013 12.741 1.00 0.00 O ATOM 598 CB CYS 79 29.522 70.736 15.153 1.00 0.00 C ATOM 599 SG CYS 79 29.003 69.909 16.185 1.00 0.00 S ATOM 600 N LYS 80 29.373 73.828 13.724 1.00 0.00 N ATOM 601 CA LYS 80 30.362 74.620 12.901 1.00 0.00 C ATOM 602 C LYS 80 30.733 73.803 11.670 1.00 0.00 C ATOM 603 O LYS 80 31.837 73.346 11.378 1.00 0.00 O ATOM 604 CB LYS 80 31.785 75.019 13.171 1.00 0.00 C ATOM 605 CG LYS 80 32.357 75.979 12.126 1.00 0.00 C ATOM 606 CD LYS 80 33.799 76.406 12.413 1.00 0.00 C ATOM 607 CE LYS 80 34.392 77.319 11.337 1.00 0.00 C ATOM 608 NZ LYS 80 35.783 77.682 11.692 1.00 0.00 N ATOM 609 N SER 81 29.770 73.540 10.794 1.00 0.00 N ATOM 610 CA SER 81 30.046 72.825 9.561 1.00 0.00 C ATOM 611 C SER 81 31.057 71.911 10.241 1.00 0.00 C ATOM 612 O SER 81 32.251 72.132 10.438 1.00 0.00 O ATOM 613 CB SER 81 30.741 73.223 8.290 1.00 0.00 C ATOM 614 OG SER 81 30.765 72.130 7.384 1.00 0.00 O ATOM 615 N TYR 82 30.646 70.734 10.686 1.00 0.00 N ATOM 616 CA TYR 82 31.592 69.794 11.268 1.00 0.00 C ATOM 617 C TYR 82 31.841 70.322 12.679 1.00 0.00 C ATOM 618 O TYR 82 31.222 70.058 13.708 1.00 0.00 O ATOM 619 CB TYR 82 32.598 68.900 10.607 1.00 0.00 C ATOM 620 CG TYR 82 31.845 67.890 9.811 1.00 0.00 C ATOM 621 CD1 TYR 82 31.694 68.065 8.429 1.00 0.00 C ATOM 622 CD2 TYR 82 31.278 66.746 10.414 1.00 0.00 C ATOM 623 CE1 TYR 82 30.992 67.131 7.642 1.00 0.00 C ATOM 624 CE2 TYR 82 30.561 65.787 9.630 1.00 0.00 C ATOM 625 CZ TYR 82 30.430 65.998 8.241 1.00 0.00 C ATOM 626 OH TYR 82 29.744 65.105 7.446 1.00 0.00 O ATOM 627 N SER 83 32.852 71.175 12.829 1.00 0.00 N ATOM 628 CA SER 83 33.206 71.668 14.159 1.00 0.00 C ATOM 629 C SER 83 32.715 71.336 15.551 1.00 0.00 C ATOM 630 O SER 83 31.578 70.995 15.873 1.00 0.00 O ATOM 631 CB SER 83 33.364 73.137 13.946 1.00 0.00 C ATOM 632 OG SER 83 33.653 73.781 15.179 1.00 0.00 O ATOM 633 N SER 84 33.573 71.409 16.560 1.00 0.00 N ATOM 634 CA SER 84 33.070 71.219 17.933 1.00 0.00 C ATOM 635 C SER 84 32.693 72.559 18.536 1.00 0.00 C ATOM 636 O SER 84 33.099 73.054 19.586 1.00 0.00 O ATOM 637 CB SER 84 34.286 71.098 18.806 1.00 0.00 C ATOM 638 OG SER 84 35.043 69.956 18.433 1.00 0.00 O ATOM 639 N CYS 85 31.825 73.296 17.862 1.00 0.00 N ATOM 640 CA CYS 85 31.265 74.524 18.469 1.00 0.00 C ATOM 641 C CYS 85 30.444 74.735 19.725 1.00 0.00 C ATOM 642 O CYS 85 29.296 75.165 19.823 1.00 0.00 O ATOM 643 CB CYS 85 30.046 74.890 17.681 1.00 0.00 C ATOM 644 SG CYS 85 29.028 73.905 17.766 1.00 0.00 S ATOM 645 N CYS 86 31.053 74.410 20.860 1.00 0.00 N ATOM 646 CA CYS 86 30.376 74.428 22.167 1.00 0.00 C ATOM 647 C CYS 86 30.867 75.463 23.171 1.00 0.00 C ATOM 648 O CYS 86 31.319 75.273 24.299 1.00 0.00 O ATOM 649 CB CYS 86 30.530 73.211 23.030 1.00 0.00 C ATOM 650 SG CYS 86 29.766 73.293 24.225 1.00 0.00 S ATOM 651 N HIS 87 30.817 76.727 22.826 1.00 0.00 N ATOM 652 CA HIS 87 31.208 77.780 23.767 1.00 0.00 C ATOM 653 C HIS 87 30.075 78.682 23.381 1.00 0.00 C ATOM 654 O HIS 87 29.961 79.313 22.332 1.00 0.00 O ATOM 655 CB HIS 87 32.244 78.666 23.155 1.00 0.00 C ATOM 656 CG HIS 87 32.730 79.733 24.091 1.00 0.00 C ATOM 657 ND1 HIS 87 33.629 79.511 25.114 1.00 0.00 N ATOM 658 CD2 HIS 87 32.437 81.054 24.159 1.00 0.00 C ATOM 659 CE1 HIS 87 33.870 80.613 25.758 1.00 0.00 C ATOM 660 NE2 HIS 87 33.159 81.576 25.204 1.00 0.00 N ATOM 661 N ASP 88 29.076 78.835 24.237 1.00 0.00 N ATOM 662 CA ASP 88 27.859 79.622 23.955 1.00 0.00 C ATOM 663 C ASP 88 26.844 78.976 23.021 1.00 0.00 C ATOM 664 O ASP 88 25.626 79.140 22.990 1.00 0.00 O ATOM 665 CB ASP 88 27.693 81.090 23.755 1.00 0.00 C ATOM 666 CG ASP 88 27.929 81.777 25.093 1.00 0.00 C ATOM 667 OD1 ASP 88 27.922 81.064 26.133 1.00 0.00 O ATOM 668 OD2 ASP 88 28.121 83.022 25.094 1.00 0.00 O ATOM 669 N PHE 89 27.339 78.127 22.126 1.00 0.00 N ATOM 670 CA PHE 89 26.506 77.432 21.181 1.00 0.00 C ATOM 671 C PHE 89 25.718 78.668 20.756 1.00 0.00 C ATOM 672 O PHE 89 24.657 79.089 21.215 1.00 0.00 O ATOM 673 CB PHE 89 25.364 76.471 21.311 1.00 0.00 C ATOM 674 CG PHE 89 24.997 76.021 19.939 1.00 0.00 C ATOM 675 CD1 PHE 89 25.732 75.026 19.255 1.00 0.00 C ATOM 676 CD2 PHE 89 23.890 76.593 19.286 1.00 0.00 C ATOM 677 CE1 PHE 89 25.372 74.600 17.944 1.00 0.00 C ATOM 678 CE2 PHE 89 23.508 76.184 17.973 1.00 0.00 C ATOM 679 CZ PHE 89 24.254 75.184 17.299 1.00 0.00 C ATOM 680 N ASP 90 26.239 79.384 19.766 1.00 0.00 N ATOM 681 CA ASP 90 25.560 80.568 19.248 1.00 0.00 C ATOM 682 C ASP 90 25.137 81.611 20.311 1.00 0.00 C ATOM 683 O ASP 90 25.793 82.493 20.863 1.00 0.00 O ATOM 684 CB ASP 90 24.934 80.478 17.898 1.00 0.00 C ATOM 685 CG ASP 90 24.446 81.867 17.512 1.00 0.00 C ATOM 686 OD1 ASP 90 25.285 82.807 17.501 1.00 0.00 O ATOM 687 OD2 ASP 90 23.227 82.007 17.223 1.00 0.00 O ATOM 688 N GLU 91 23.888 81.541 20.678 1.00 0.00 N ATOM 689 CA GLU 91 23.325 82.379 21.705 1.00 0.00 C ATOM 690 C GLU 91 22.548 81.253 22.352 1.00 0.00 C ATOM 691 O GLU 91 21.392 80.918 22.100 1.00 0.00 O ATOM 692 CB GLU 91 22.048 83.071 21.309 1.00 0.00 C ATOM 693 CG GLU 91 21.544 84.067 22.356 1.00 0.00 C ATOM 694 CD GLU 91 20.271 84.708 21.822 1.00 0.00 C ATOM 695 OE1 GLU 91 19.861 84.349 20.686 1.00 0.00 O ATOM 696 OE2 GLU 91 19.692 85.564 22.542 1.00 0.00 O ATOM 697 N LEU 92 23.121 80.519 23.295 1.00 0.00 N ATOM 698 CA LEU 92 22.431 79.412 23.896 1.00 0.00 C ATOM 699 C LEU 92 21.519 78.787 22.839 1.00 0.00 C ATOM 700 O LEU 92 20.321 78.995 22.651 1.00 0.00 O ATOM 701 CB LEU 92 21.416 79.455 25.012 1.00 0.00 C ATOM 702 CG LEU 92 21.989 79.957 26.339 1.00 0.00 C ATOM 703 CD1 LEU 92 20.962 80.150 27.454 1.00 0.00 C ATOM 704 CD2 LEU 92 23.037 79.047 26.976 1.00 0.00 C ATOM 705 N CYS 93 22.082 77.907 22.017 1.00 0.00 N ATOM 706 CA CYS 93 21.061 77.254 21.071 1.00 0.00 C ATOM 707 C CYS 93 20.683 78.341 20.061 1.00 0.00 C ATOM 708 O CYS 93 20.044 79.372 20.269 1.00 0.00 O ATOM 709 CB CYS 93 20.035 76.184 21.293 1.00 0.00 C ATOM 710 SG CYS 93 19.329 75.854 20.107 1.00 0.00 S ATOM 711 N LEU 94 21.081 78.175 18.798 1.00 0.00 N ATOM 712 CA LEU 94 20.741 79.202 17.763 1.00 0.00 C ATOM 713 C LEU 94 19.320 79.257 17.214 1.00 0.00 C ATOM 714 O LEU 94 18.465 78.373 17.202 1.00 0.00 O ATOM 715 CB LEU 94 21.747 78.864 16.692 1.00 0.00 C ATOM 716 CG LEU 94 23.199 79.038 17.143 1.00 0.00 C ATOM 717 CD1 LEU 94 24.248 78.609 16.119 1.00 0.00 C ATOM 718 CD2 LEU 94 23.602 80.470 17.486 1.00 0.00 C ATOM 719 N LYS 95 18.970 80.422 16.682 1.00 0.00 N ATOM 720 CA LYS 95 17.586 80.651 16.045 1.00 0.00 C ATOM 721 C LYS 95 17.333 81.463 14.773 1.00 0.00 C ATOM 722 O LYS 95 17.334 82.686 14.641 1.00 0.00 O ATOM 723 CB LYS 95 16.804 81.627 16.870 1.00 0.00 C ATOM 724 CG LYS 95 15.373 81.838 16.373 1.00 0.00 C ATOM 725 CD LYS 95 14.527 82.717 17.296 1.00 0.00 C ATOM 726 CE LYS 95 13.063 82.825 16.867 1.00 0.00 C ATOM 727 NZ LYS 95 12.302 83.621 17.856 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 102.11 12.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 100.12 16.1 56 100.0 56 ARMSMC BURIED . . . . . . . . 107.00 4.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.61 27.8 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 96.61 28.6 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 93.12 28.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 107.13 27.3 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.28 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 67.10 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 81.83 38.9 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 69.36 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.57 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 72.91 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 68.76 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 76.57 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.28 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 75.28 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 68.90 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 96.68 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.42 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.42 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2105 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.98 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.73 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.43 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.94 142 100.0 142 CRMSMC BURIED . . . . . . . . 6.95 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.17 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 9.15 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 11.09 103 100.0 103 CRMSSC BURIED . . . . . . . . 7.27 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.22 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.91 219 100.0 219 CRMSALL BURIED . . . . . . . . 7.10 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.355 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 7.933 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 5.830 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.351 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 7.888 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 5.965 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.732 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 7.920 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 9.754 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 6.099 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.939 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 8.667 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 6.041 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 7 17 27 40 40 DISTCA CA (P) 0.00 5.00 17.50 42.50 67.50 40 DISTCA CA (RMS) 0.00 1.85 2.49 3.52 5.37 DISTCA ALL (N) 5 23 45 97 203 303 303 DISTALL ALL (P) 1.65 7.59 14.85 32.01 67.00 303 DISTALL ALL (RMS) 0.75 1.38 2.10 3.22 5.75 DISTALL END of the results output