####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS104_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS104_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 1.97 1.97 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 1.97 1.97 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 71 - 94 0.95 2.03 LCS_AVERAGE: 41.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 40 40 6 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 40 40 12 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 40 40 9 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 40 40 13 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 40 40 3 4 5 14 28 33 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 40 40 3 23 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 40 40 3 4 5 31 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 40 40 3 4 5 10 28 30 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 40 40 3 4 26 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 40 40 3 4 4 5 7 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 40 40 0 3 4 6 20 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 40 40 2 3 5 7 7 12 23 36 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 24 40 40 0 8 22 31 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 24 40 40 2 17 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 24 40 40 3 6 28 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 24 40 40 14 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 24 40 40 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 24 40 40 10 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 24 40 40 14 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 24 40 40 13 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 24 40 40 10 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 24 40 40 13 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 24 40 40 13 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 24 40 40 14 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 24 40 40 5 23 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 40 40 3 3 4 19 26 34 36 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 80.42 ( 41.25 100.00 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 27 30 32 34 35 36 38 39 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 37.50 67.50 75.00 80.00 85.00 87.50 90.00 95.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.58 0.75 0.89 1.09 1.20 1.32 1.60 1.75 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 GDT RMS_ALL_AT 2.10 2.05 2.04 2.03 2.01 2.02 2.02 2.03 1.99 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 1.97 # Checking swapping # possible swapping detected: D 76 D 76 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 1.071 0 0.176 0.176 1.071 88.214 88.214 LGA S 57 S 57 0.408 0 0.095 0.584 2.345 97.619 92.540 LGA C 58 C 58 0.392 0 0.033 0.097 0.518 97.619 96.825 LGA K 59 K 59 0.678 0 0.110 0.698 2.240 90.476 84.762 LGA G 60 G 60 0.985 0 0.112 0.112 1.149 85.952 85.952 LGA R 61 R 61 0.766 0 0.121 1.038 3.441 95.238 85.238 LGA C 62 C 62 0.361 0 0.614 0.533 1.613 93.214 95.476 LGA F 63 F 63 3.664 0 0.325 0.252 9.102 59.524 27.792 LGA E 64 E 64 1.394 0 0.680 0.637 2.731 71.190 72.169 LGA L 65 L 65 2.668 0 0.675 0.904 6.360 54.286 47.262 LGA Q 66 Q 66 4.188 0 0.062 1.124 10.917 56.548 28.201 LGA E 67 E 67 2.278 0 0.070 1.204 8.539 68.929 38.360 LGA V 68 V 68 3.045 0 0.594 0.910 7.352 51.905 36.054 LGA G 69 G 69 4.936 0 0.467 0.467 5.072 31.786 31.786 LGA P 70 P 70 6.562 0 0.106 0.187 10.817 19.524 11.769 LGA P 71 P 71 3.068 0 0.184 0.339 3.827 59.762 52.721 LGA D 72 D 72 1.624 3 0.605 0.601 3.162 67.143 39.821 LGA C 73 C 73 0.617 0 0.147 0.629 2.626 88.214 81.905 LGA R 74 R 74 0.441 0 0.061 0.838 4.292 92.857 74.416 LGA C 75 C 75 0.494 0 0.033 0.050 0.879 95.238 93.651 LGA D 76 D 76 0.794 0 0.085 0.822 3.481 90.476 76.905 LGA N 77 N 77 1.941 0 0.086 0.656 4.058 77.143 62.857 LGA L 78 L 78 0.511 0 0.158 0.700 3.324 90.476 83.274 LGA C 79 C 79 0.440 0 0.061 0.121 0.502 100.000 98.413 LGA K 80 K 80 0.439 0 0.036 1.001 3.143 97.619 81.587 LGA S 81 S 81 0.642 0 0.057 0.698 2.502 90.476 83.413 LGA Y 82 Y 82 0.680 0 0.144 0.694 2.808 92.857 84.206 LGA S 83 S 83 0.799 0 0.199 0.197 1.360 90.476 87.460 LGA S 84 S 84 0.592 0 0.129 0.158 1.191 95.238 92.143 LGA C 85 C 85 0.339 0 0.031 0.079 0.725 100.000 96.825 LGA C 86 C 86 0.458 0 0.052 0.104 0.893 95.238 93.651 LGA H 87 H 87 0.717 0 0.095 0.963 7.394 92.857 59.857 LGA D 88 D 88 0.691 0 0.209 1.157 3.609 95.238 81.429 LGA F 89 F 89 0.670 0 0.097 0.155 0.722 90.476 92.208 LGA D 90 D 90 0.759 0 0.029 0.565 1.680 88.214 86.012 LGA E 91 E 91 0.532 0 0.081 0.896 3.248 90.476 81.058 LGA L 92 L 92 0.571 0 0.148 0.868 2.110 97.619 88.631 LGA C 93 C 93 0.403 0 0.488 0.509 2.611 82.262 88.175 LGA L 94 L 94 1.401 0 0.375 1.000 6.367 77.262 51.012 LGA K 95 K 95 3.759 0 0.630 1.136 10.749 43.452 28.466 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 1.972 1.871 3.175 81.077 71.562 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 1.60 85.625 91.458 2.237 LGA_LOCAL RMSD: 1.598 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.028 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 1.972 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.516315 * X + -0.707250 * Y + -0.482926 * Z + 157.800354 Y_new = -0.532376 * X + 0.706770 * Y + -0.465888 * Z + 164.257767 Z_new = 0.670817 * X + 0.016553 * Y + -0.741438 * Z + 55.693604 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.340880 -0.735309 3.119271 [DEG: -134.1226 -42.1301 178.7211 ] ZXZ: -0.803353 2.406008 1.546126 [DEG: -46.0287 137.8541 88.5865 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS104_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS104_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 1.60 91.458 1.97 REMARK ---------------------------------------------------------- MOLECULE T0543TS104_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 34.604 71.806 18.350 1.00338.48 N ATOM 423 CA GLY 56 33.874 71.995 19.561 1.00338.48 C ATOM 424 C GLY 56 33.102 73.250 19.356 1.00338.48 C ATOM 425 O GLY 56 33.092 74.136 20.211 1.00338.48 O ATOM 426 N SER 57 32.428 73.343 18.190 1.00239.59 N ATOM 427 CA SER 57 31.658 74.512 17.907 1.00239.59 C ATOM 428 CB SER 57 32.310 75.459 16.883 1.00239.59 C ATOM 429 OG SER 57 32.393 74.839 15.608 1.00239.59 O ATOM 430 C SER 57 30.355 74.041 17.345 1.00239.59 C ATOM 431 O SER 57 30.294 73.038 16.642 1.00239.59 O ATOM 432 N CYS 58 29.268 74.738 17.715 1.00482.65 N ATOM 433 CA CYS 58 27.914 74.475 17.317 1.00482.65 C ATOM 434 CB CYS 58 26.853 74.948 18.323 1.00482.65 C ATOM 435 SG CYS 58 26.710 73.749 19.680 1.00482.65 S ATOM 436 C CYS 58 27.588 74.997 15.958 1.00482.65 C ATOM 437 O CYS 58 26.464 74.834 15.487 1.00482.65 O ATOM 438 N LYS 59 28.506 75.748 15.333 1.00822.60 N ATOM 439 CA LYS 59 28.182 76.304 14.053 1.00822.60 C ATOM 440 CB LYS 59 29.320 77.170 13.478 1.00822.60 C ATOM 441 CG LYS 59 29.009 77.782 12.110 1.00822.60 C ATOM 442 CD LYS 59 30.000 78.864 11.670 1.00822.60 C ATOM 443 CE LYS 59 31.450 78.382 11.575 1.00822.60 C ATOM 444 NZ LYS 59 32.325 79.494 11.139 1.00822.60 N ATOM 445 C LYS 59 27.949 75.189 13.093 1.00822.60 C ATOM 446 O LYS 59 28.912 74.576 12.653 1.00822.60 O ATOM 447 N GLY 60 26.666 74.933 12.739 1.00369.66 N ATOM 448 CA GLY 60 26.188 73.973 11.773 1.00369.66 C ATOM 449 C GLY 60 25.809 72.695 12.454 1.00369.66 C ATOM 450 O GLY 60 25.194 71.819 11.845 1.00369.66 O ATOM 451 N ARG 61 26.216 72.543 13.723 1.00377.72 N ATOM 452 CA ARG 61 25.980 71.370 14.514 1.00377.72 C ATOM 453 CB ARG 61 27.044 71.168 15.602 1.00377.72 C ATOM 454 CG ARG 61 28.422 70.926 14.977 1.00377.72 C ATOM 455 CD ARG 61 29.501 70.509 15.971 1.00377.72 C ATOM 456 NE ARG 61 29.618 69.034 15.897 1.00377.72 N ATOM 457 CZ ARG 61 29.723 68.289 17.031 1.00377.72 C ATOM 458 NH1 ARG 61 29.688 68.884 18.260 1.00377.72 N ATOM 459 NH2 ARG 61 29.819 66.934 16.918 1.00377.72 N ATOM 460 C ARG 61 24.603 71.298 15.107 1.00377.72 C ATOM 461 O ARG 61 24.174 70.228 15.528 1.00377.72 O ATOM 462 N CYS 62 23.874 72.427 15.181 1.00144.40 N ATOM 463 CA CYS 62 22.613 72.478 15.879 1.00144.40 C ATOM 464 CB CYS 62 21.892 73.830 15.690 1.00144.40 C ATOM 465 SG CYS 62 22.901 75.266 16.163 1.00144.40 S ATOM 466 C CYS 62 21.693 71.426 15.322 1.00144.40 C ATOM 467 O CYS 62 20.880 70.858 16.048 1.00144.40 O ATOM 468 N PHE 63 21.764 71.179 14.005 1.00299.47 N ATOM 469 CA PHE 63 20.934 70.240 13.296 1.00299.47 C ATOM 470 CB PHE 63 21.129 70.357 11.778 1.00299.47 C ATOM 471 CG PHE 63 20.951 71.786 11.385 1.00299.47 C ATOM 472 CD1 PHE 63 19.702 72.350 11.263 1.00299.47 C ATOM 473 CD2 PHE 63 22.057 72.564 11.126 1.00299.47 C ATOM 474 CE1 PHE 63 19.565 73.669 10.894 1.00299.47 C ATOM 475 CE2 PHE 63 21.927 73.881 10.756 1.00299.47 C ATOM 476 CZ PHE 63 20.676 74.437 10.640 1.00299.47 C ATOM 477 C PHE 63 21.240 68.800 13.644 1.00299.47 C ATOM 478 O PHE 63 20.335 67.985 13.802 1.00299.47 O ATOM 479 N GLU 64 22.532 68.460 13.817 1.00362.54 N ATOM 480 CA GLU 64 23.017 67.101 13.826 1.00362.54 C ATOM 481 CB GLU 64 24.552 66.990 13.770 1.00362.54 C ATOM 482 CG GLU 64 25.304 67.845 14.775 1.00362.54 C ATOM 483 CD GLU 64 26.767 67.443 14.738 1.00362.54 C ATOM 484 OE1 GLU 64 27.279 67.045 13.658 1.00362.54 O ATOM 485 OE2 GLU 64 27.393 67.535 15.824 1.00362.54 O ATOM 486 C GLU 64 22.481 66.160 14.864 1.00362.54 C ATOM 487 O GLU 64 22.418 64.963 14.582 1.00362.54 O ATOM 488 N LEU 65 22.134 66.632 16.076 1.00375.01 N ATOM 489 CA LEU 65 21.642 65.798 17.151 1.00375.01 C ATOM 490 CB LEU 65 20.698 64.650 16.669 1.00375.01 C ATOM 491 CG LEU 65 19.789 63.880 17.670 1.00375.01 C ATOM 492 CD1 LEU 65 20.521 62.849 18.530 1.00375.01 C ATOM 493 CD2 LEU 65 18.922 64.832 18.501 1.00375.01 C ATOM 494 C LEU 65 22.892 65.326 17.847 1.00375.01 C ATOM 495 O LEU 65 23.994 65.729 17.480 1.00375.01 O ATOM 496 N GLN 66 22.762 64.492 18.888 1.00187.96 N ATOM 497 CA GLN 66 23.847 64.060 19.727 1.00187.96 C ATOM 498 CB GLN 66 23.319 63.142 20.836 1.00187.96 C ATOM 499 CG GLN 66 24.365 62.608 21.801 1.00187.96 C ATOM 500 CD GLN 66 23.619 61.706 22.766 1.00187.96 C ATOM 501 OE1 GLN 66 23.382 60.537 22.468 1.00187.96 O ATOM 502 NE2 GLN 66 23.224 62.264 23.942 1.00187.96 N ATOM 503 C GLN 66 24.865 63.278 18.955 1.00187.96 C ATOM 504 O GLN 66 24.523 62.333 18.247 1.00187.96 O ATOM 505 N GLU 67 26.160 63.649 19.099 1.00212.34 N ATOM 506 CA GLU 67 27.218 62.949 18.427 1.00212.34 C ATOM 507 CB GLU 67 28.033 63.842 17.479 1.00212.34 C ATOM 508 CG GLU 67 27.217 64.390 16.307 1.00212.34 C ATOM 509 CD GLU 67 26.927 63.253 15.335 1.00212.34 C ATOM 510 OE1 GLU 67 27.237 62.081 15.675 1.00212.34 O ATOM 511 OE2 GLU 67 26.390 63.548 14.235 1.00212.34 O ATOM 512 C GLU 67 28.162 62.422 19.458 1.00212.34 C ATOM 513 O GLU 67 28.676 63.158 20.300 1.00212.34 O ATOM 514 N VAL 68 28.393 61.099 19.414 1.00172.19 N ATOM 515 CA VAL 68 29.291 60.441 20.316 1.00172.19 C ATOM 516 CB VAL 68 29.209 58.942 20.221 1.00172.19 C ATOM 517 CG1 VAL 68 27.840 58.488 20.753 1.00172.19 C ATOM 518 CG2 VAL 68 29.439 58.530 18.759 1.00172.19 C ATOM 519 C VAL 68 30.690 60.865 20.000 1.00172.19 C ATOM 520 O VAL 68 31.511 61.039 20.900 1.00172.19 O ATOM 521 N GLY 69 30.981 61.079 18.701 1.00114.13 N ATOM 522 CA GLY 69 32.330 61.299 18.272 1.00114.13 C ATOM 523 C GLY 69 32.934 62.477 18.951 1.00114.13 C ATOM 524 O GLY 69 34.051 62.351 19.446 1.00114.13 O ATOM 525 N PRO 70 32.332 63.632 18.954 1.00226.96 N ATOM 526 CA PRO 70 32.947 64.648 19.762 1.00226.96 C ATOM 527 CD PRO 70 31.819 64.171 17.706 1.00226.96 C ATOM 528 CB PRO 70 32.633 65.984 19.100 1.00226.96 C ATOM 529 CG PRO 70 32.354 65.609 17.635 1.00226.96 C ATOM 530 C PRO 70 32.375 64.555 21.137 1.00226.96 C ATOM 531 O PRO 70 31.162 64.728 21.240 1.00226.96 O ATOM 532 N PRO 71 33.118 64.278 22.167 1.00140.11 N ATOM 533 CA PRO 71 32.588 64.426 23.491 1.00140.11 C ATOM 534 CD PRO 71 34.159 63.267 22.110 1.00140.11 C ATOM 535 CB PRO 71 33.359 63.445 24.376 1.00140.11 C ATOM 536 CG PRO 71 34.618 63.102 23.565 1.00140.11 C ATOM 537 C PRO 71 32.814 65.853 23.875 1.00140.11 C ATOM 538 O PRO 71 32.258 66.305 24.876 1.00140.11 O ATOM 539 N ASP 72 33.634 66.570 23.079 1.00137.00 N ATOM 540 CA ASP 72 34.047 67.904 23.400 1.00137.00 C ATOM 541 CB ASP 72 34.896 68.577 22.309 1.00137.00 C ATOM 542 CG ASP 72 36.332 68.116 22.460 1.00137.00 C ATOM 543 OD1 ASP 72 36.858 68.200 23.601 1.00137.00 O ATOM 544 OD2 ASP 72 36.921 67.671 21.441 1.00137.00 O ATOM 545 C ASP 72 32.847 68.743 23.545 1.00137.00 C ATOM 546 O ASP 72 32.750 69.542 24.476 1.00137.00 O ATOM 547 N CYS 73 31.903 68.586 22.613 1.00128.48 N ATOM 548 CA CYS 73 30.744 69.397 22.701 1.00128.48 C ATOM 549 CB CYS 73 30.910 70.697 21.923 1.00128.48 C ATOM 550 SG CYS 73 29.314 71.490 21.665 1.00128.48 S ATOM 551 C CYS 73 29.607 68.681 22.078 1.00128.48 C ATOM 552 O CYS 73 29.795 67.888 21.159 1.00128.48 O ATOM 553 N ARG 74 28.390 68.911 22.602 1.00288.55 N ATOM 554 CA ARG 74 27.258 68.416 21.889 1.00288.55 C ATOM 555 CB ARG 74 26.509 67.223 22.514 1.00288.55 C ATOM 556 CG ARG 74 27.296 65.905 22.507 1.00288.55 C ATOM 557 CD ARG 74 28.249 65.764 23.695 1.00288.55 C ATOM 558 NE ARG 74 27.507 65.223 24.878 1.00288.55 N ATOM 559 CZ ARG 74 27.441 63.872 25.083 1.00288.55 C ATOM 560 NH1 ARG 74 27.762 63.019 24.071 1.00288.55 N ATOM 561 NH2 ARG 74 27.107 63.385 26.316 1.00288.55 N ATOM 562 C ARG 74 26.334 69.576 21.705 1.00288.55 C ATOM 563 O ARG 74 26.230 70.452 22.566 1.00288.55 O ATOM 564 N CYS 75 25.679 69.624 20.528 1.00167.98 N ATOM 565 CA CYS 75 24.821 70.723 20.196 1.00167.98 C ATOM 566 CB CYS 75 25.117 71.303 18.805 1.00167.98 C ATOM 567 SG CYS 75 26.807 71.963 18.709 1.00167.98 S ATOM 568 C CYS 75 23.405 70.248 20.204 1.00167.98 C ATOM 569 O CYS 75 22.515 70.877 19.635 1.00167.98 O ATOM 570 N ASP 76 23.168 69.131 20.904 1.00223.66 N ATOM 571 CA ASP 76 21.880 68.523 21.018 1.00223.66 C ATOM 572 CB ASP 76 22.069 67.137 21.662 1.00223.66 C ATOM 573 CG ASP 76 20.781 66.360 21.848 1.00223.66 C ATOM 574 OD1 ASP 76 19.733 66.752 21.276 1.00223.66 O ATOM 575 OD2 ASP 76 20.838 65.337 22.582 1.00223.66 O ATOM 576 C ASP 76 21.077 69.387 21.945 1.00223.66 C ATOM 577 O ASP 76 21.627 70.165 22.723 1.00223.66 O ATOM 578 N ASN 77 19.737 69.298 21.859 1.00107.05 N ATOM 579 CA ASN 77 18.883 70.045 22.735 1.00107.05 C ATOM 580 CB ASN 77 17.400 69.902 22.403 1.00107.05 C ATOM 581 CG ASN 77 17.190 70.652 21.105 1.00107.05 C ATOM 582 OD1 ASN 77 17.445 71.851 21.017 1.00107.05 O ATOM 583 ND2 ASN 77 16.732 69.920 20.057 1.00107.05 N ATOM 584 C ASN 77 19.057 69.521 24.122 1.00107.05 C ATOM 585 O ASN 77 18.980 70.273 25.092 1.00107.05 O ATOM 586 N LEU 78 19.282 68.198 24.238 1.00249.70 N ATOM 587 CA LEU 78 19.436 67.535 25.507 1.00249.70 C ATOM 588 CB LEU 78 19.554 66.001 25.434 1.00249.70 C ATOM 589 CG LEU 78 18.249 65.205 25.267 1.00249.70 C ATOM 590 CD1 LEU 78 17.632 65.310 23.857 1.00249.70 C ATOM 591 CD2 LEU 78 18.478 63.772 25.774 1.00249.70 C ATOM 592 C LEU 78 20.674 67.993 26.212 1.00249.70 C ATOM 593 O LEU 78 20.737 67.882 27.434 1.00249.70 O ATOM 594 N CYS 79 21.684 68.514 25.483 1.00128.65 N ATOM 595 CA CYS 79 22.996 68.797 26.009 1.00128.65 C ATOM 596 CB CYS 79 23.979 69.422 24.991 1.00128.65 C ATOM 597 SG CYS 79 23.642 71.153 24.535 1.00128.65 S ATOM 598 C CYS 79 22.932 69.708 27.193 1.00128.65 C ATOM 599 O CYS 79 23.831 69.715 28.031 1.00128.65 O ATOM 600 N LYS 80 21.893 70.540 27.282 1.00203.41 N ATOM 601 CA LYS 80 21.800 71.435 28.394 1.00203.41 C ATOM 602 CB LYS 80 20.479 72.225 28.336 1.00203.41 C ATOM 603 CG LYS 80 20.325 73.417 29.286 1.00203.41 C ATOM 604 CD LYS 80 20.927 74.728 28.767 1.00203.41 C ATOM 605 CE LYS 80 20.181 75.331 27.565 1.00203.41 C ATOM 606 NZ LYS 80 19.031 76.152 28.011 1.00203.41 N ATOM 607 C LYS 80 21.753 70.633 29.676 1.00203.41 C ATOM 608 O LYS 80 22.384 70.994 30.668 1.00203.41 O ATOM 609 N SER 81 20.977 69.527 29.719 1.00 87.71 N ATOM 610 CA SER 81 20.854 68.815 30.971 1.00 87.71 C ATOM 611 CB SER 81 19.784 67.704 31.003 1.00 87.71 C ATOM 612 OG SER 81 20.161 66.597 30.198 1.00 87.71 O ATOM 613 C SER 81 22.145 68.159 31.326 1.00 87.71 C ATOM 614 O SER 81 22.459 68.005 32.503 1.00 87.71 O ATOM 615 N TYR 82 22.887 67.702 30.304 1.00135.80 N ATOM 616 CA TYR 82 24.172 67.066 30.405 1.00135.80 C ATOM 617 CB TYR 82 24.635 66.465 29.064 1.00135.80 C ATOM 618 CG TYR 82 23.813 65.253 28.751 1.00135.80 C ATOM 619 CD1 TYR 82 22.660 65.005 29.453 1.00135.80 C ATOM 620 CD2 TYR 82 24.159 64.390 27.735 1.00135.80 C ATOM 621 CE1 TYR 82 21.879 63.908 29.178 1.00135.80 C ATOM 622 CE2 TYR 82 23.379 63.284 27.451 1.00135.80 C ATOM 623 CZ TYR 82 22.235 63.045 28.173 1.00135.80 C ATOM 624 OH TYR 82 21.419 61.924 27.899 1.00135.80 O ATOM 625 C TYR 82 25.185 68.088 30.805 1.00135.80 C ATOM 626 O TYR 82 26.150 67.787 31.510 1.00135.80 O ATOM 627 N SER 83 24.965 69.333 30.345 1.00 91.29 N ATOM 628 CA SER 83 25.853 70.438 30.521 1.00 91.29 C ATOM 629 CB SER 83 26.268 70.638 31.981 1.00 91.29 C ATOM 630 OG SER 83 25.119 70.934 32.758 1.00 91.29 O ATOM 631 C SER 83 27.079 70.216 29.700 1.00 91.29 C ATOM 632 O SER 83 28.165 70.669 30.062 1.00 91.29 O ATOM 633 N SER 84 26.949 69.500 28.564 1.00120.11 N ATOM 634 CA SER 84 28.119 69.371 27.740 1.00120.11 C ATOM 635 CB SER 84 28.467 67.916 27.372 1.00120.11 C ATOM 636 OG SER 84 27.422 67.334 26.609 1.00120.11 O ATOM 637 C SER 84 27.900 70.135 26.476 1.00120.11 C ATOM 638 O SER 84 28.375 69.738 25.415 1.00120.11 O ATOM 639 N CYS 85 27.236 71.300 26.571 1.00 96.97 N ATOM 640 CA CYS 85 26.932 72.085 25.412 1.00 96.97 C ATOM 641 CB CYS 85 25.784 73.076 25.663 1.00 96.97 C ATOM 642 SG CYS 85 24.246 72.237 26.154 1.00 96.97 S ATOM 643 C CYS 85 28.142 72.879 25.044 1.00 96.97 C ATOM 644 O CYS 85 28.968 73.179 25.904 1.00 96.97 O ATOM 645 N CYS 86 28.279 73.231 23.743 1.00132.99 N ATOM 646 CA CYS 86 29.366 74.069 23.308 1.00132.99 C ATOM 647 CB CYS 86 29.405 74.447 21.809 1.00132.99 C ATOM 648 SG CYS 86 29.841 73.133 20.647 1.00132.99 S ATOM 649 C CYS 86 29.107 75.406 23.919 1.00132.99 C ATOM 650 O CYS 86 27.985 75.717 24.313 1.00132.99 O ATOM 651 N HIS 87 30.164 76.225 24.046 1.00147.65 N ATOM 652 CA HIS 87 29.982 77.576 24.490 1.00147.65 C ATOM 653 ND1 HIS 87 32.577 76.864 26.228 1.00147.65 N ATOM 654 CG HIS 87 32.055 78.091 25.873 1.00147.65 C ATOM 655 CB HIS 87 31.300 78.358 24.612 1.00147.65 C ATOM 656 NE2 HIS 87 33.107 78.282 27.858 1.00147.65 N ATOM 657 CD2 HIS 87 32.388 78.941 26.877 1.00147.65 C ATOM 658 CE1 HIS 87 33.192 77.038 27.423 1.00147.65 C ATOM 659 C HIS 87 29.217 78.269 23.419 1.00147.65 C ATOM 660 O HIS 87 28.318 79.067 23.681 1.00147.65 O ATOM 661 N ASP 88 29.598 77.945 22.170 1.00252.73 N ATOM 662 CA ASP 88 29.082 78.483 20.947 1.00252.73 C ATOM 663 CB ASP 88 29.847 77.998 19.700 1.00252.73 C ATOM 664 CG ASP 88 31.211 78.674 19.658 1.00252.73 C ATOM 665 OD1 ASP 88 31.427 79.632 20.446 1.00252.73 O ATOM 666 OD2 ASP 88 32.054 78.245 18.824 1.00252.73 O ATOM 667 C ASP 88 27.663 78.048 20.771 1.00252.73 C ATOM 668 O ASP 88 26.914 78.675 20.026 1.00252.73 O ATOM 669 N PHE 89 27.263 76.956 21.446 1.00171.00 N ATOM 670 CA PHE 89 25.972 76.345 21.290 1.00171.00 C ATOM 671 CB PHE 89 25.774 75.184 22.284 1.00171.00 C ATOM 672 CG PHE 89 24.374 74.682 22.206 1.00171.00 C ATOM 673 CD1 PHE 89 23.988 73.804 21.220 1.00171.00 C ATOM 674 CD2 PHE 89 23.444 75.081 23.140 1.00171.00 C ATOM 675 CE1 PHE 89 22.695 73.341 21.160 1.00171.00 C ATOM 676 CE2 PHE 89 22.150 74.622 23.086 1.00171.00 C ATOM 677 CZ PHE 89 21.774 73.751 22.092 1.00171.00 C ATOM 678 C PHE 89 24.870 77.332 21.517 1.00171.00 C ATOM 679 O PHE 89 23.911 77.378 20.750 1.00171.00 O ATOM 680 N ASP 90 24.947 78.142 22.583 1.00185.93 N ATOM 681 CA ASP 90 23.855 79.040 22.834 1.00185.93 C ATOM 682 CB ASP 90 23.996 79.777 24.176 1.00185.93 C ATOM 683 CG ASP 90 23.770 78.751 25.280 1.00185.93 C ATOM 684 OD1 ASP 90 22.985 77.792 25.049 1.00185.93 O ATOM 685 OD2 ASP 90 24.385 78.911 26.367 1.00185.93 O ATOM 686 C ASP 90 23.750 80.055 21.736 1.00185.93 C ATOM 687 O ASP 90 22.655 80.348 21.256 1.00185.93 O ATOM 688 N GLU 91 24.894 80.620 21.306 1.00269.31 N ATOM 689 CA GLU 91 24.885 81.664 20.319 1.00269.31 C ATOM 690 CB GLU 91 26.294 82.230 20.078 1.00269.31 C ATOM 691 CG GLU 91 26.892 82.895 21.318 1.00269.31 C ATOM 692 CD GLU 91 28.369 83.151 21.055 1.00269.31 C ATOM 693 OE1 GLU 91 28.806 82.952 19.891 1.00269.31 O ATOM 694 OE2 GLU 91 29.077 83.544 22.019 1.00269.31 O ATOM 695 C GLU 91 24.401 81.134 19.004 1.00269.31 C ATOM 696 O GLU 91 23.477 81.687 18.408 1.00269.31 O ATOM 697 N LEU 92 25.026 80.038 18.526 1.00339.95 N ATOM 698 CA LEU 92 24.691 79.465 17.254 1.00339.95 C ATOM 699 CB LEU 92 25.683 78.393 16.770 1.00339.95 C ATOM 700 CG LEU 92 26.989 78.974 16.196 1.00339.95 C ATOM 701 CD1 LEU 92 26.715 79.747 14.895 1.00339.95 C ATOM 702 CD2 LEU 92 27.753 79.812 17.231 1.00339.95 C ATOM 703 C LEU 92 23.331 78.854 17.278 1.00339.95 C ATOM 704 O LEU 92 22.566 79.010 16.327 1.00339.95 O ATOM 705 N CYS 93 22.987 78.130 18.359 1.00127.54 N ATOM 706 CA CYS 93 21.705 77.494 18.378 1.00127.54 C ATOM 707 CB CYS 93 21.765 76.045 18.895 1.00127.54 C ATOM 708 SG CYS 93 23.124 75.076 18.170 1.00127.54 S ATOM 709 C CYS 93 20.879 78.251 19.362 1.00127.54 C ATOM 710 O CYS 93 20.499 77.724 20.405 1.00127.54 O ATOM 711 N LEU 94 20.624 79.535 19.070 1.00196.98 N ATOM 712 CA LEU 94 19.784 80.343 19.899 1.00196.98 C ATOM 713 CB LEU 94 19.845 81.822 19.462 1.00196.98 C ATOM 714 CG LEU 94 19.037 82.846 20.293 1.00196.98 C ATOM 715 CD1 LEU 94 17.527 82.596 20.220 1.00196.98 C ATOM 716 CD2 LEU 94 19.554 82.977 21.733 1.00196.98 C ATOM 717 C LEU 94 18.396 79.838 19.686 1.00196.98 C ATOM 718 O LEU 94 17.564 79.818 20.593 1.00196.98 O ATOM 719 N LYS 95 18.147 79.465 18.420 1.00133.23 N ATOM 720 CA LYS 95 16.889 79.087 17.850 1.00133.23 C ATOM 721 CB LYS 95 17.013 79.041 16.318 1.00133.23 C ATOM 722 CG LYS 95 15.715 79.294 15.560 1.00133.23 C ATOM 723 CD LYS 95 15.941 79.592 14.073 1.00133.23 C ATOM 724 CE LYS 95 14.733 80.213 13.367 1.00133.23 C ATOM 725 NZ LYS 95 14.981 80.316 11.912 1.00133.23 N ATOM 726 C LYS 95 16.349 77.759 18.316 1.00133.23 C ATOM 727 O LYS 95 15.159 77.647 18.605 1.00133.23 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 56.68 70.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 56.51 69.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 57.08 72.7 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.50 63.9 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 68.34 65.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 72.50 60.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 62.15 72.7 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.25 34.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 75.78 47.1 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 93.58 27.8 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 51.92 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.22 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 79.22 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 81.66 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 46.12 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 53.10 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 53.10 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 41.24 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 85.43 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.97 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.97 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0493 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.19 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.23 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.10 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.29 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.49 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.21 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 3.81 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.70 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.54 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.20 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.55 219 100.0 219 CRMSALL BURIED . . . . . . . . 1.99 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 223.268 0.984 0.984 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 221.756 0.982 0.982 29 100.0 29 ERRCA BURIED . . . . . . . . 227.255 0.990 0.990 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 222.455 0.983 0.983 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 220.652 0.981 0.982 142 100.0 142 ERRMC BURIED . . . . . . . . 227.111 0.988 0.989 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 236.464 0.969 0.970 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 240.543 0.973 0.974 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 236.462 0.963 0.964 103 100.0 103 ERRSC BURIED . . . . . . . . 236.470 0.984 0.984 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 229.521 0.977 0.978 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 228.724 0.973 0.974 219 100.0 219 ERRALL BURIED . . . . . . . . 231.598 0.986 0.987 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 25 31 34 39 40 40 40 DISTCA CA (P) 62.50 77.50 85.00 97.50 100.00 40 DISTCA CA (RMS) 0.70 0.94 1.16 1.77 1.97 DISTCA ALL (N) 132 195 229 266 298 303 303 DISTALL ALL (P) 43.56 64.36 75.58 87.79 98.35 303 DISTALL ALL (RMS) 0.68 1.00 1.33 1.88 2.91 DISTALL END of the results output