####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS088_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS088_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 112 - 139 4.97 9.97 LONGEST_CONTINUOUS_SEGMENT: 28 113 - 140 4.76 10.21 LCS_AVERAGE: 54.32 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 15 118 - 132 1.97 9.05 LONGEST_CONTINUOUS_SEGMENT: 15 119 - 133 1.69 8.79 LCS_AVERAGE: 21.58 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 122 - 130 0.90 8.72 LCS_AVERAGE: 12.10 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 4 5 18 3 4 4 5 7 12 15 16 19 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT A 97 A 97 4 5 18 3 4 4 5 5 9 9 13 15 16 17 24 26 28 28 30 32 35 37 39 LCS_GDT R 98 R 98 4 5 18 3 4 4 5 5 9 9 16 19 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT G 99 G 99 4 5 18 3 7 8 10 12 14 17 19 19 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT W 100 W 100 3 5 18 3 3 4 8 10 13 16 19 19 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT E 101 E 101 3 5 18 3 3 5 6 9 10 17 19 19 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT C 102 C 102 3 5 18 3 3 4 6 9 10 12 13 17 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT T 103 T 103 4 5 18 3 3 5 6 9 10 12 13 13 15 16 26 27 28 28 30 32 33 37 39 LCS_GDT K 104 K 104 4 5 18 3 3 4 4 5 7 7 11 13 15 24 26 27 28 28 30 32 33 37 39 LCS_GDT D 105 D 105 4 5 18 3 3 4 9 11 14 17 19 19 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT R 106 R 106 4 7 18 3 4 6 10 12 14 17 19 19 21 24 26 27 28 28 30 32 35 37 39 LCS_GDT C 107 C 107 4 7 18 3 4 6 6 10 11 13 14 15 16 20 24 26 28 28 30 32 33 37 39 LCS_GDT G 108 G 108 4 7 18 3 4 6 7 10 11 12 14 14 15 16 17 24 25 27 29 31 33 36 37 LCS_GDT E 109 E 109 4 8 18 3 4 6 7 10 11 12 14 14 15 16 17 20 22 27 30 32 35 37 39 LCS_GDT V 110 V 110 3 8 18 3 5 5 7 10 11 12 14 14 15 16 17 20 22 25 29 32 35 37 39 LCS_GDT R 111 R 111 3 8 18 3 5 6 6 10 11 12 14 14 15 16 17 17 19 20 25 31 35 37 39 LCS_GDT N 112 N 112 4 8 28 3 4 6 7 10 11 12 14 14 15 16 17 20 22 26 29 31 35 37 39 LCS_GDT E 113 E 113 4 8 28 3 5 5 5 8 10 12 14 14 15 16 17 17 20 20 23 24 28 30 34 LCS_GDT E 114 E 114 4 8 28 3 5 5 7 10 11 12 14 14 22 24 25 25 26 27 28 28 29 33 34 LCS_GDT N 115 N 115 4 8 28 3 5 5 6 10 11 14 17 21 23 24 25 25 26 27 28 30 35 37 39 LCS_GDT A 116 A 116 6 9 28 3 5 7 9 12 15 16 16 22 23 24 25 25 26 27 28 28 29 31 34 LCS_GDT C 117 C 117 6 9 28 3 5 7 9 12 15 17 18 22 23 24 25 25 26 27 28 31 34 37 39 LCS_GDT H 118 H 118 6 15 28 3 4 7 9 12 15 17 19 22 23 24 25 25 26 27 29 32 35 37 39 LCS_GDT C 119 C 119 6 15 28 5 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT S 120 S 120 6 15 28 5 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT E 121 E 121 6 15 28 5 7 10 14 15 16 17 19 21 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT D 122 D 122 9 15 28 5 7 10 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT C 123 C 123 9 15 28 5 7 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT L 124 L 124 9 15 28 5 7 10 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT S 125 S 125 9 15 28 5 7 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT R 126 R 126 9 15 28 4 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT G 127 G 127 9 15 28 4 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT D 128 D 128 9 15 28 5 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT C 129 C 129 9 15 28 4 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT C 130 C 130 9 15 28 4 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT T 131 T 131 6 15 28 4 6 7 12 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT N 132 N 132 6 15 28 5 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT Y 133 Y 133 6 15 28 5 6 7 9 12 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 LCS_GDT Q 134 Q 134 6 10 28 5 5 6 9 11 15 16 19 22 23 24 25 27 28 28 30 32 35 37 39 LCS_GDT V 135 V 135 6 9 28 5 5 6 7 9 15 16 19 22 23 24 25 26 28 28 29 31 35 37 39 LCS_GDT V 136 V 136 6 9 28 5 5 6 7 9 15 16 19 22 23 24 25 25 26 27 29 31 35 36 39 LCS_GDT C 137 C 137 6 9 28 3 4 4 7 8 10 12 13 17 17 21 24 24 26 26 28 28 29 30 32 LCS_GDT K 138 K 138 4 5 28 3 4 4 4 5 10 14 17 22 23 24 25 25 26 27 28 28 32 33 34 LCS_GDT G 139 G 139 4 5 28 3 4 7 9 12 14 17 19 22 23 24 25 25 27 28 29 31 35 36 39 LCS_GDT E 140 E 140 3 5 28 0 9 11 14 15 16 16 17 19 21 24 26 27 28 28 30 32 35 37 39 LCS_AVERAGE LCS_A: 29.33 ( 12.10 21.58 54.32 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 9 11 14 15 16 17 19 22 23 24 26 27 28 28 30 32 35 37 39 GDT PERCENT_AT 11.11 20.00 24.44 31.11 33.33 35.56 37.78 42.22 48.89 51.11 53.33 57.78 60.00 62.22 62.22 66.67 71.11 77.78 82.22 86.67 GDT RMS_LOCAL 0.13 0.77 0.97 1.32 1.47 1.67 2.27 2.57 3.26 3.36 3.50 3.77 3.96 4.11 4.11 4.52 5.02 6.18 6.37 6.62 GDT RMS_ALL_AT 9.85 9.08 8.89 8.74 8.83 8.78 9.51 9.53 11.03 10.85 9.11 9.39 9.28 9.49 9.49 9.30 9.09 8.05 8.37 8.14 # Checking swapping # possible swapping detected: D 105 D 105 # possible swapping detected: Y 133 Y 133 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 7.511 0 0.511 1.240 9.367 5.119 3.741 LGA A 97 A 97 10.038 0 0.585 0.572 12.078 1.548 1.238 LGA R 98 R 98 6.601 0 0.558 1.203 13.081 15.714 6.147 LGA G 99 G 99 1.781 0 0.078 0.078 2.833 65.000 65.000 LGA W 100 W 100 3.679 0 0.619 0.822 12.481 46.905 15.612 LGA E 101 E 101 3.162 0 0.064 1.037 5.284 50.119 43.386 LGA C 102 C 102 5.246 0 0.384 0.693 7.992 20.476 32.460 LGA T 103 T 103 6.135 0 0.265 0.785 9.476 31.786 22.857 LGA K 104 K 104 6.574 0 0.111 0.984 16.709 20.714 9.524 LGA D 105 D 105 3.800 0 0.731 0.859 4.874 43.810 46.131 LGA R 106 R 106 2.494 0 0.631 1.318 10.529 47.619 23.377 LGA C 107 C 107 7.915 0 0.027 0.265 9.436 9.643 6.905 LGA G 108 G 108 11.102 0 0.182 0.182 12.138 0.119 0.119 LGA E 109 E 109 9.840 0 0.235 1.046 11.792 0.238 0.265 LGA V 110 V 110 12.851 0 0.102 0.712 14.753 0.000 0.000 LGA R 111 R 111 16.375 0 0.404 0.955 26.689 0.000 0.000 LGA N 112 N 112 16.600 0 0.084 1.214 18.579 0.000 0.000 LGA E 113 E 113 21.756 0 0.167 1.352 23.484 0.000 0.000 LGA E 114 E 114 19.827 0 0.602 1.341 24.295 0.000 0.000 LGA N 115 N 115 14.328 0 0.185 0.756 17.018 0.000 0.000 LGA A 116 A 116 15.272 0 0.597 0.569 16.335 0.000 0.000 LGA C 117 C 117 10.158 0 0.239 0.577 11.850 0.119 1.746 LGA H 118 H 118 8.431 0 0.092 0.379 15.830 15.119 6.048 LGA C 119 C 119 4.441 0 0.506 0.457 7.966 36.310 28.254 LGA S 120 S 120 2.842 0 0.127 0.313 4.065 67.619 59.603 LGA E 121 E 121 1.973 0 0.310 1.379 6.697 70.833 49.947 LGA D 122 D 122 2.170 0 0.254 0.519 4.110 72.976 63.512 LGA C 123 C 123 1.290 0 0.105 0.734 3.250 81.548 76.270 LGA L 124 L 124 1.343 0 0.018 1.319 5.314 81.429 66.488 LGA S 125 S 125 1.336 0 0.218 0.530 1.650 81.429 80.000 LGA R 126 R 126 1.439 0 0.097 0.812 4.228 77.143 73.766 LGA G 127 G 127 1.421 0 0.254 0.254 1.421 85.952 85.952 LGA D 128 D 128 1.447 0 0.382 1.100 4.987 79.286 63.333 LGA C 129 C 129 1.629 0 0.065 0.190 1.863 72.857 72.857 LGA C 130 C 130 3.041 0 0.111 0.129 6.239 59.167 48.492 LGA T 131 T 131 1.998 0 0.308 0.670 5.484 72.976 59.728 LGA N 132 N 132 3.734 0 0.739 0.985 6.751 39.524 30.714 LGA Y 133 Y 133 6.335 0 0.220 1.454 9.274 12.500 19.127 LGA Q 134 Q 134 8.231 0 0.122 0.990 11.708 5.595 8.783 LGA V 135 V 135 10.474 0 0.042 1.394 14.486 0.714 1.837 LGA V 136 V 136 14.104 0 0.621 1.386 16.006 0.000 0.000 LGA C 137 C 137 17.653 0 0.213 0.335 20.102 0.000 0.000 LGA K 138 K 138 15.600 0 0.495 1.150 24.479 0.000 0.000 LGA G 139 G 139 12.779 0 0.693 0.693 13.925 0.000 0.000 LGA E 140 E 140 6.740 0 0.120 1.628 8.696 7.024 21.270 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 7.928 7.856 9.030 30.643 26.544 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 19 2.57 40.000 36.457 0.713 LGA_LOCAL RMSD: 2.565 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.528 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 7.928 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.908315 * X + -0.262684 * Y + 0.325516 * Z + 38.461971 Y_new = -0.236938 * X + -0.318208 * Y + -0.917935 * Z + 53.608276 Z_new = 0.344708 * X + -0.910901 * Y + 0.226793 * Z + 43.318363 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.886425 -0.351928 -1.326781 [DEG: -165.3800 -20.1640 -76.0189 ] ZXZ: 0.340782 1.342012 2.779822 [DEG: 19.5254 76.8916 159.2721 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS088_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS088_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 19 2.57 36.457 7.93 REMARK ---------------------------------------------------------- MOLECULE T0543TS088_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 728 N THR 96 10.989 80.648 22.610 1.00 0.00 N ATOM 729 CA THR 96 9.729 81.123 22.051 1.00 0.00 C ATOM 730 C THR 96 9.105 82.249 22.930 1.00 0.00 C ATOM 731 O THR 96 8.294 81.944 23.811 1.00 0.00 O ATOM 732 CB THR 96 8.697 79.974 21.721 1.00 0.00 C ATOM 733 OG1 THR 96 7.289 80.155 21.825 1.00 0.00 O ATOM 734 CG2 THR 96 9.193 78.582 22.008 1.00 0.00 C ATOM 735 N ALA 97 9.697 83.457 22.915 1.00 0.00 N ATOM 736 CA ALA 97 9.203 84.685 23.606 1.00 0.00 C ATOM 737 C ALA 97 9.556 85.842 22.677 1.00 0.00 C ATOM 738 O ALA 97 8.717 86.727 22.487 1.00 0.00 O ATOM 739 CB ALA 97 9.722 84.816 25.047 1.00 0.00 C ATOM 740 N ARG 98 10.824 85.925 22.350 1.00 0.00 N ATOM 741 CA ARG 98 11.264 86.882 21.423 1.00 0.00 C ATOM 742 C ARG 98 11.922 86.072 20.292 1.00 0.00 C ATOM 743 O ARG 98 12.950 85.418 20.520 1.00 0.00 O ATOM 744 CB ARG 98 12.236 87.907 22.017 1.00 0.00 C ATOM 745 CG ARG 98 11.854 88.350 23.409 1.00 0.00 C ATOM 746 CD ARG 98 10.572 89.110 23.451 1.00 0.00 C ATOM 747 NE ARG 98 10.626 90.369 22.701 1.00 0.00 N ATOM 748 CZ ARG 98 9.687 90.724 21.825 1.00 0.00 C ATOM 749 NH1 ARG 98 8.654 89.913 21.595 1.00 0.00 H ATOM 750 NH2 ARG 98 9.723 91.852 21.149 1.00 0.00 H ATOM 751 N GLY 99 11.560 86.386 19.079 1.00 0.00 N ATOM 752 CA GLY 99 12.143 85.727 17.925 1.00 0.00 C ATOM 753 C GLY 99 11.523 86.238 16.637 1.00 0.00 C ATOM 754 O GLY 99 10.615 87.096 16.598 1.00 0.00 O ATOM 755 N TRP 100 12.010 85.635 15.580 1.00 0.00 N ATOM 756 CA TRP 100 11.466 85.937 14.265 1.00 0.00 C ATOM 757 C TRP 100 10.971 84.618 13.646 1.00 0.00 C ATOM 758 O TRP 100 11.655 83.580 13.738 1.00 0.00 O ATOM 759 CB TRP 100 12.425 86.643 13.284 1.00 0.00 C ATOM 760 CG TRP 100 12.941 87.981 13.714 1.00 0.00 C ATOM 761 CD1 TRP 100 12.724 88.663 14.864 1.00 0.00 C ATOM 762 CD2 TRP 100 13.732 88.826 12.905 1.00 0.00 C ATOM 763 NE1 TRP 100 13.370 89.873 14.838 1.00 0.00 N ATOM 764 CE2 TRP 100 13.985 89.999 13.640 1.00 0.00 C ATOM 765 CE3 TRP 100 14.272 88.657 11.634 1.00 0.00 C ATOM 766 CZ2 TRP 100 14.725 91.049 13.116 1.00 0.00 C ATOM 767 CZ3 TRP 100 14.996 89.698 11.114 1.00 0.00 C ATOM 768 CH2 TRP 100 15.234 90.858 11.852 1.00 0.00 H ATOM 769 N GLU 101 9.999 84.730 12.775 1.00 0.00 N ATOM 770 CA GLU 101 9.502 83.556 12.031 1.00 0.00 C ATOM 771 C GLU 101 9.989 83.754 10.587 1.00 0.00 C ATOM 772 O GLU 101 9.682 84.836 10.058 1.00 0.00 O ATOM 773 CB GLU 101 8.007 83.348 12.108 1.00 0.00 C ATOM 774 CG GLU 101 7.068 84.360 12.634 1.00 0.00 C ATOM 775 CD GLU 101 7.140 85.757 12.164 1.00 0.00 C ATOM 776 OE1 GLU 101 7.321 86.068 10.950 1.00 0.00 O ATOM 777 OE2 GLU 101 7.072 86.550 13.104 1.00 0.00 O ATOM 778 N CYS 102 11.078 83.062 10.183 1.00 0.00 N ATOM 779 CA CYS 102 11.696 83.206 8.853 1.00 0.00 C ATOM 780 C CYS 102 12.018 84.672 8.714 1.00 0.00 C ATOM 781 O CYS 102 13.022 85.067 9.349 1.00 0.00 O ATOM 782 CB CYS 102 10.859 82.584 7.704 1.00 0.00 C ATOM 783 SG CYS 102 9.125 83.087 7.797 1.00 0.00 S ATOM 784 N THR 103 11.525 85.398 7.712 1.00 0.00 N ATOM 785 CA THR 103 11.688 86.843 7.681 1.00 0.00 C ATOM 786 C THR 103 10.325 87.440 8.200 1.00 0.00 C ATOM 787 O THR 103 9.402 87.582 7.383 1.00 0.00 O ATOM 788 CB THR 103 12.159 87.398 6.301 1.00 0.00 C ATOM 789 OG1 THR 103 11.519 88.640 5.839 1.00 0.00 O ATOM 790 CG2 THR 103 12.466 86.406 5.243 1.00 0.00 C ATOM 791 N LYS 104 10.240 87.847 9.505 1.00 0.00 N ATOM 792 CA LYS 104 8.996 88.472 9.959 1.00 0.00 C ATOM 793 C LYS 104 8.942 89.820 9.191 1.00 0.00 C ATOM 794 O LYS 104 7.939 90.052 8.512 1.00 0.00 O ATOM 795 CB LYS 104 8.882 88.812 11.403 1.00 0.00 C ATOM 796 CG LYS 104 9.569 88.483 12.650 1.00 0.00 C ATOM 797 CD LYS 104 9.522 89.660 13.631 1.00 0.00 C ATOM 798 CE LYS 104 9.964 89.335 15.035 1.00 0.00 C ATOM 799 NZ LYS 104 10.436 90.551 15.757 1.00 0.00 N ATOM 800 N ASP 105 9.948 90.704 9.265 1.00 0.00 N ATOM 801 CA ASP 105 10.052 91.949 8.528 1.00 0.00 C ATOM 802 C ASP 105 11.257 91.802 7.539 1.00 0.00 C ATOM 803 O ASP 105 12.060 90.847 7.731 1.00 0.00 O ATOM 804 CB ASP 105 10.224 93.106 9.510 1.00 0.00 C ATOM 805 CG ASP 105 9.397 93.071 10.786 1.00 0.00 C ATOM 806 OD1 ASP 105 8.248 92.502 10.872 1.00 0.00 O ATOM 807 OD2 ASP 105 9.863 93.623 11.826 1.00 0.00 O ATOM 808 N ARG 106 11.315 92.528 6.425 1.00 0.00 N ATOM 809 CA ARG 106 12.534 92.369 5.574 1.00 0.00 C ATOM 810 C ARG 106 13.842 92.261 6.443 1.00 0.00 C ATOM 811 O ARG 106 14.049 93.079 7.355 1.00 0.00 O ATOM 812 CB ARG 106 12.605 93.606 4.721 1.00 0.00 C ATOM 813 CG ARG 106 11.298 94.134 4.171 1.00 0.00 C ATOM 814 CD ARG 106 10.595 93.178 3.267 1.00 0.00 C ATOM 815 NE ARG 106 11.329 92.920 2.024 1.00 0.00 N ATOM 816 CZ ARG 106 11.551 91.690 1.563 1.00 0.00 C ATOM 817 NH1 ARG 106 11.111 90.635 2.248 1.00 0.00 H ATOM 818 NH2 ARG 106 12.204 91.446 0.448 1.00 0.00 H ATOM 819 N CYS 107 14.613 91.195 6.207 1.00 0.00 N ATOM 820 CA CYS 107 15.842 91.002 6.936 1.00 0.00 C ATOM 821 C CYS 107 16.654 92.297 6.759 1.00 0.00 C ATOM 822 O CYS 107 16.988 92.630 5.612 1.00 0.00 O ATOM 823 CB CYS 107 16.580 89.746 6.454 1.00 0.00 C ATOM 824 SG CYS 107 15.606 88.347 5.980 1.00 0.00 S ATOM 825 N GLY 108 17.386 92.625 7.782 1.00 0.00 N ATOM 826 CA GLY 108 18.213 93.776 7.814 1.00 0.00 C ATOM 827 C GLY 108 17.629 94.971 8.601 1.00 0.00 C ATOM 828 O GLY 108 18.457 95.727 9.148 1.00 0.00 O ATOM 829 N GLU 109 16.290 95.208 8.624 1.00 0.00 N ATOM 830 CA GLU 109 15.716 96.287 9.463 1.00 0.00 C ATOM 831 C GLU 109 15.019 95.503 10.636 1.00 0.00 C ATOM 832 O GLU 109 13.877 95.021 10.452 1.00 0.00 O ATOM 833 CB GLU 109 14.728 97.132 8.749 1.00 0.00 C ATOM 834 CG GLU 109 14.679 97.415 7.299 1.00 0.00 C ATOM 835 CD GLU 109 16.016 97.817 6.708 1.00 0.00 C ATOM 836 OE1 GLU 109 16.494 98.955 7.015 1.00 0.00 O ATOM 837 OE2 GLU 109 16.640 97.042 5.961 1.00 0.00 O ATOM 838 N VAL 110 15.597 95.560 11.823 1.00 0.00 N ATOM 839 CA VAL 110 15.037 94.758 12.868 1.00 0.00 C ATOM 840 C VAL 110 14.355 95.581 14.034 1.00 0.00 C ATOM 841 O VAL 110 14.993 96.501 14.598 1.00 0.00 O ATOM 842 CB VAL 110 16.127 93.838 13.393 1.00 0.00 C ATOM 843 CG1 VAL 110 17.383 93.716 12.614 1.00 0.00 C ATOM 844 CG2 VAL 110 16.385 93.807 14.925 1.00 0.00 C ATOM 845 N ARG 111 13.082 95.607 13.919 1.00 0.00 N ATOM 846 CA ARG 111 12.125 96.190 14.862 1.00 0.00 C ATOM 847 C ARG 111 10.750 95.637 14.315 1.00 0.00 C ATOM 848 O ARG 111 10.671 94.394 14.181 1.00 0.00 O ATOM 849 CB ARG 111 12.280 97.740 14.831 1.00 0.00 C ATOM 850 CG ARG 111 11.508 98.418 15.943 1.00 0.00 C ATOM 851 CD ARG 111 11.913 99.884 15.984 1.00 0.00 C ATOM 852 NE ARG 111 11.921 100.452 17.373 1.00 0.00 N ATOM 853 CZ ARG 111 10.798 101.085 17.746 1.00 0.00 C ATOM 854 NH1 ARG 111 9.765 101.206 16.876 1.00 0.00 H ATOM 855 NH2 ARG 111 10.649 101.620 18.970 1.00 0.00 H ATOM 856 N ASN 112 9.630 96.332 14.638 1.00 0.00 N ATOM 857 CA ASN 112 8.302 95.930 14.079 1.00 0.00 C ATOM 858 C ASN 112 7.324 97.129 13.747 1.00 0.00 C ATOM 859 O ASN 112 6.961 97.870 14.679 1.00 0.00 O ATOM 860 CB ASN 112 7.589 95.040 15.107 1.00 0.00 C ATOM 861 CG ASN 112 8.163 94.415 16.343 1.00 0.00 C ATOM 862 OD1 ASN 112 9.375 94.261 16.716 1.00 0.00 O ATOM 863 ND2 ASN 112 7.283 94.104 17.324 1.00 0.00 N ATOM 864 N GLU 113 7.078 97.486 12.453 1.00 0.00 N ATOM 865 CA GLU 113 6.021 98.464 12.037 1.00 0.00 C ATOM 866 C GLU 113 4.891 97.591 11.362 1.00 0.00 C ATOM 867 O GLU 113 3.708 97.742 11.643 1.00 0.00 O ATOM 868 CB GLU 113 6.494 99.546 11.108 1.00 0.00 C ATOM 869 CG GLU 113 7.811 99.532 10.435 1.00 0.00 C ATOM 870 CD GLU 113 8.256 98.325 9.710 1.00 0.00 C ATOM 871 OE1 GLU 113 7.488 97.643 8.971 1.00 0.00 O ATOM 872 OE2 GLU 113 9.426 98.050 9.976 1.00 0.00 O ATOM 873 N GLU 114 5.361 96.688 10.457 1.00 0.00 N ATOM 874 CA GLU 114 4.589 95.691 9.763 1.00 0.00 C ATOM 875 C GLU 114 5.347 94.359 9.814 1.00 0.00 C ATOM 876 O GLU 114 6.500 94.217 9.314 1.00 0.00 O ATOM 877 CB GLU 114 4.340 96.003 8.305 1.00 0.00 C ATOM 878 CG GLU 114 4.380 97.375 7.697 1.00 0.00 C ATOM 879 CD GLU 114 3.561 98.410 8.441 1.00 0.00 C ATOM 880 OE1 GLU 114 2.293 98.323 8.400 1.00 0.00 O ATOM 881 OE2 GLU 114 4.118 99.311 9.097 1.00 0.00 O ATOM 882 N ASN 115 4.574 93.354 10.165 1.00 0.00 N ATOM 883 CA ASN 115 5.003 91.993 10.227 1.00 0.00 C ATOM 884 C ASN 115 4.219 91.129 9.222 1.00 0.00 C ATOM 885 O ASN 115 3.035 90.806 9.403 1.00 0.00 O ATOM 886 CB ASN 115 4.822 91.418 11.631 1.00 0.00 C ATOM 887 CG ASN 115 4.507 92.168 12.885 1.00 0.00 C ATOM 888 OD1 ASN 115 4.584 93.413 13.159 1.00 0.00 O ATOM 889 ND2 ASN 115 3.891 91.466 13.866 1.00 0.00 N ATOM 890 N ALA 116 4.915 90.879 8.134 1.00 0.00 N ATOM 891 CA ALA 116 4.479 90.047 7.048 1.00 0.00 C ATOM 892 C ALA 116 5.621 89.035 6.789 1.00 0.00 C ATOM 893 O ALA 116 6.634 89.393 6.165 1.00 0.00 O ATOM 894 CB ALA 116 4.138 90.905 5.817 1.00 0.00 C ATOM 895 N CYS 117 5.372 87.754 7.056 1.00 0.00 N ATOM 896 CA CYS 117 6.363 86.696 6.934 1.00 0.00 C ATOM 897 C CYS 117 6.491 86.275 5.440 1.00 0.00 C ATOM 898 O CYS 117 5.546 85.708 4.864 1.00 0.00 O ATOM 899 CB CYS 117 5.780 85.482 7.672 1.00 0.00 C ATOM 900 SG CYS 117 4.933 85.794 9.242 1.00 0.00 S ATOM 901 N HIS 118 7.625 86.563 4.829 1.00 0.00 N ATOM 902 CA HIS 118 7.957 86.169 3.449 1.00 0.00 C ATOM 903 C HIS 118 8.979 85.024 3.338 1.00 0.00 C ATOM 904 O HIS 118 9.952 84.972 4.098 1.00 0.00 O ATOM 905 CB HIS 118 8.286 87.320 2.563 1.00 0.00 C ATOM 906 CG HIS 118 7.633 88.605 2.788 1.00 0.00 C ATOM 907 ND1 HIS 118 8.318 89.825 2.832 1.00 0.00 N ATOM 908 CD2 HIS 118 6.308 88.856 2.963 1.00 0.00 C ATOM 909 CE1 HIS 118 7.409 90.773 3.040 1.00 0.00 C ATOM 910 NE2 HIS 118 6.193 90.223 3.126 1.00 0.00 N ATOM 911 N CYS 119 8.627 84.060 2.442 1.00 0.00 N ATOM 912 CA CYS 119 9.387 82.838 2.141 1.00 0.00 C ATOM 913 C CYS 119 10.628 83.217 1.283 1.00 0.00 C ATOM 914 O CYS 119 10.449 83.886 0.269 1.00 0.00 O ATOM 915 CB CYS 119 8.478 81.974 1.244 1.00 0.00 C ATOM 916 SG CYS 119 6.725 81.898 1.679 1.00 0.00 S ATOM 917 N SER 120 11.823 82.680 1.539 1.00 0.00 N ATOM 918 CA SER 120 13.029 82.980 0.755 1.00 0.00 C ATOM 919 C SER 120 13.959 81.722 0.657 1.00 0.00 C ATOM 920 O SER 120 14.266 81.209 1.728 1.00 0.00 O ATOM 921 CB SER 120 13.620 84.155 1.538 1.00 0.00 C ATOM 922 OG SER 120 12.957 84.462 2.818 1.00 0.00 O ATOM 923 N GLU 121 14.821 81.668 -0.380 1.00 0.00 N ATOM 924 CA GLU 121 15.693 80.502 -0.673 1.00 0.00 C ATOM 925 C GLU 121 16.393 79.895 0.566 1.00 0.00 C ATOM 926 O GLU 121 15.953 78.802 0.950 1.00 0.00 O ATOM 927 CB GLU 121 16.683 80.782 -1.793 1.00 0.00 C ATOM 928 CG GLU 121 17.053 82.153 -2.220 1.00 0.00 C ATOM 929 CD GLU 121 17.382 83.185 -1.216 1.00 0.00 C ATOM 930 OE1 GLU 121 18.105 82.953 -0.201 1.00 0.00 O ATOM 931 OE2 GLU 121 16.812 84.247 -1.462 1.00 0.00 O ATOM 932 N ASP 122 17.154 80.693 1.320 1.00 0.00 N ATOM 933 CA ASP 122 17.839 80.268 2.531 1.00 0.00 C ATOM 934 C ASP 122 16.956 79.462 3.510 1.00 0.00 C ATOM 935 O ASP 122 17.379 78.410 3.984 1.00 0.00 O ATOM 936 CB ASP 122 18.249 81.535 3.239 1.00 0.00 C ATOM 937 CG ASP 122 17.402 82.781 3.229 1.00 0.00 C ATOM 938 OD1 ASP 122 16.510 82.896 2.385 1.00 0.00 O ATOM 939 OD2 ASP 122 17.537 83.657 4.158 1.00 0.00 O ATOM 940 N CYS 123 15.876 80.097 3.953 1.00 0.00 N ATOM 941 CA CYS 123 14.932 79.538 4.823 1.00 0.00 C ATOM 942 C CYS 123 14.358 78.205 4.270 1.00 0.00 C ATOM 943 O CYS 123 14.414 77.234 5.041 1.00 0.00 O ATOM 944 CB CYS 123 13.819 80.528 5.163 1.00 0.00 C ATOM 945 SG CYS 123 14.254 82.261 5.217 1.00 0.00 S ATOM 946 N LEU 124 13.722 78.191 3.066 1.00 0.00 N ATOM 947 CA LEU 124 13.281 76.899 2.567 1.00 0.00 C ATOM 948 C LEU 124 14.390 75.803 2.613 1.00 0.00 C ATOM 949 O LEU 124 14.073 74.707 3.080 1.00 0.00 O ATOM 950 CB LEU 124 12.371 76.902 1.292 1.00 0.00 C ATOM 951 CG LEU 124 11.989 78.208 0.683 1.00 0.00 C ATOM 952 CD1 LEU 124 11.052 78.884 1.674 1.00 0.00 C ATOM 953 CD2 LEU 124 13.164 79.138 0.308 1.00 0.00 C ATOM 954 N SER 125 15.621 76.058 2.160 1.00 0.00 N ATOM 955 CA SER 125 16.660 75.068 2.194 1.00 0.00 C ATOM 956 C SER 125 17.005 74.523 3.637 1.00 0.00 C ATOM 957 O SER 125 16.921 73.297 3.795 1.00 0.00 O ATOM 958 CB SER 125 17.871 75.642 1.424 1.00 0.00 C ATOM 959 OG SER 125 17.885 77.085 1.208 1.00 0.00 O ATOM 960 N ARG 126 17.157 75.366 4.699 1.00 0.00 N ATOM 961 CA ARG 126 17.564 74.916 5.991 1.00 0.00 C ATOM 962 C ARG 126 16.470 74.588 7.060 1.00 0.00 C ATOM 963 O ARG 126 16.885 74.284 8.196 1.00 0.00 O ATOM 964 CB ARG 126 18.549 75.943 6.471 1.00 0.00 C ATOM 965 CG ARG 126 19.571 76.576 5.606 1.00 0.00 C ATOM 966 CD ARG 126 20.458 75.556 4.940 1.00 0.00 C ATOM 967 NE ARG 126 20.977 76.096 3.675 1.00 0.00 N ATOM 968 CZ ARG 126 21.866 75.484 2.861 1.00 0.00 C ATOM 969 NH1 ARG 126 22.469 74.335 3.204 1.00 0.00 H ATOM 970 NH2 ARG 126 22.004 75.962 1.620 1.00 0.00 H ATOM 971 N GLY 127 15.230 74.400 6.689 1.00 0.00 N ATOM 972 CA GLY 127 14.217 73.996 7.627 1.00 0.00 C ATOM 973 C GLY 127 13.400 75.074 8.345 1.00 0.00 C ATOM 974 O GLY 127 12.389 74.689 8.968 1.00 0.00 O ATOM 975 N ASP 128 13.970 76.276 8.657 1.00 0.00 N ATOM 976 CA ASP 128 13.181 77.278 9.253 1.00 0.00 C ATOM 977 C ASP 128 12.491 78.091 8.174 1.00 0.00 C ATOM 978 O ASP 128 13.033 79.060 7.634 1.00 0.00 O ATOM 979 CB ASP 128 13.946 78.180 10.208 1.00 0.00 C ATOM 980 CG ASP 128 15.028 77.460 11.073 1.00 0.00 C ATOM 981 OD1 ASP 128 14.910 76.251 11.491 1.00 0.00 O ATOM 982 OD2 ASP 128 16.072 78.098 11.398 1.00 0.00 O ATOM 983 N CYS 129 11.267 77.763 8.031 1.00 0.00 N ATOM 984 CA CYS 129 10.330 78.387 7.131 1.00 0.00 C ATOM 985 C CYS 129 9.135 78.868 7.960 1.00 0.00 C ATOM 986 O CYS 129 8.840 78.367 9.061 1.00 0.00 O ATOM 987 CB CYS 129 9.996 77.540 5.954 1.00 0.00 C ATOM 988 SG CYS 129 11.248 76.456 5.298 1.00 0.00 S ATOM 989 N CYS 130 8.353 79.645 7.299 1.00 0.00 N ATOM 990 CA CYS 130 7.224 80.326 7.802 1.00 0.00 C ATOM 991 C CYS 130 6.123 79.447 8.527 1.00 0.00 C ATOM 992 O CYS 130 6.292 78.192 8.518 1.00 0.00 O ATOM 993 CB CYS 130 6.563 80.948 6.581 1.00 0.00 C ATOM 994 SG CYS 130 7.603 81.567 5.246 1.00 0.00 S ATOM 995 N THR 131 5.491 80.075 9.507 1.00 0.00 N ATOM 996 CA THR 131 4.476 79.343 10.232 1.00 0.00 C ATOM 997 C THR 131 3.606 78.502 9.285 1.00 0.00 C ATOM 998 O THR 131 3.860 77.301 9.258 1.00 0.00 O ATOM 999 CB THR 131 3.706 80.214 11.278 1.00 0.00 C ATOM 1000 OG1 THR 131 2.314 79.942 11.581 1.00 0.00 O ATOM 1001 CG2 THR 131 4.087 81.655 11.332 1.00 0.00 C ATOM 1002 N ASN 132 2.953 79.097 8.271 1.00 0.00 N ATOM 1003 CA ASN 132 2.192 78.249 7.296 1.00 0.00 C ATOM 1004 C ASN 132 3.273 77.596 6.388 1.00 0.00 C ATOM 1005 O ASN 132 4.422 77.471 6.861 1.00 0.00 O ATOM 1006 CB ASN 132 1.204 79.064 6.512 1.00 0.00 C ATOM 1007 CG ASN 132 0.658 80.408 6.812 1.00 0.00 C ATOM 1008 OD1 ASN 132 0.724 81.118 7.871 1.00 0.00 O ATOM 1009 ND2 ASN 132 0.119 81.089 5.773 1.00 0.00 N ATOM 1010 N TYR 133 2.978 76.972 5.215 1.00 0.00 N ATOM 1011 CA TYR 133 4.112 76.349 4.524 1.00 0.00 C ATOM 1012 C TYR 133 4.581 75.177 5.461 1.00 0.00 C ATOM 1013 O TYR 133 4.022 74.100 5.278 1.00 0.00 O ATOM 1014 CB TYR 133 5.183 77.342 4.108 1.00 0.00 C ATOM 1015 CG TYR 133 4.688 78.714 3.726 1.00 0.00 C ATOM 1016 CD1 TYR 133 3.595 78.872 2.857 1.00 0.00 C ATOM 1017 CD2 TYR 133 5.253 79.845 4.330 1.00 0.00 C ATOM 1018 CE1 TYR 133 3.056 80.138 2.623 1.00 0.00 C ATOM 1019 CE2 TYR 133 4.724 81.119 4.093 1.00 0.00 C ATOM 1020 CZ TYR 133 3.621 81.252 3.250 1.00 0.00 C ATOM 1021 OH TYR 133 3.036 82.493 3.105 1.00 0.00 H ATOM 1022 N GLN 134 5.669 75.234 6.211 1.00 0.00 N ATOM 1023 CA GLN 134 5.947 74.067 7.099 1.00 0.00 C ATOM 1024 C GLN 134 4.747 73.380 7.816 1.00 0.00 C ATOM 1025 O GLN 134 4.614 72.180 7.592 1.00 0.00 O ATOM 1026 CB GLN 134 7.173 74.210 7.941 1.00 0.00 C ATOM 1027 CG GLN 134 8.337 74.908 7.357 1.00 0.00 C ATOM 1028 CD GLN 134 8.648 74.377 5.992 1.00 0.00 C ATOM 1029 OE1 GLN 134 9.072 73.213 5.949 1.00 0.00 O ATOM 1030 NE2 GLN 134 8.382 75.148 4.903 1.00 0.00 N ATOM 1031 N VAL 135 3.774 74.054 8.428 1.00 0.00 N ATOM 1032 CA VAL 135 2.708 73.254 9.089 1.00 0.00 C ATOM 1033 C VAL 135 1.978 72.296 8.067 1.00 0.00 C ATOM 1034 O VAL 135 1.911 71.106 8.394 1.00 0.00 O ATOM 1035 CB VAL 135 1.710 74.090 9.888 1.00 0.00 C ATOM 1036 CG1 VAL 135 2.123 75.535 10.079 1.00 0.00 C ATOM 1037 CG2 VAL 135 0.236 73.940 9.593 1.00 0.00 C ATOM 1038 N VAL 136 1.570 72.733 6.857 1.00 0.00 N ATOM 1039 CA VAL 136 0.851 71.914 5.897 1.00 0.00 C ATOM 1040 C VAL 136 1.789 70.972 5.116 1.00 0.00 C ATOM 1041 O VAL 136 2.826 71.398 4.561 1.00 0.00 O ATOM 1042 CB VAL 136 0.068 72.829 4.957 1.00 0.00 C ATOM 1043 CG1 VAL 136 -0.087 74.258 5.348 1.00 0.00 C ATOM 1044 CG2 VAL 136 0.247 72.648 3.441 1.00 0.00 C ATOM 1045 N CYS 137 1.579 69.666 5.327 1.00 0.00 N ATOM 1046 CA CYS 137 2.269 68.550 4.626 1.00 0.00 C ATOM 1047 C CYS 137 1.872 68.463 3.107 1.00 0.00 C ATOM 1048 O CYS 137 2.757 68.582 2.271 1.00 0.00 O ATOM 1049 CB CYS 137 2.000 67.222 5.346 1.00 0.00 C ATOM 1050 SG CYS 137 1.797 67.273 7.120 1.00 0.00 S ATOM 1051 N LYS 138 0.562 68.293 2.780 1.00 0.00 N ATOM 1052 CA LYS 138 -0.004 68.275 1.431 1.00 0.00 C ATOM 1053 C LYS 138 -1.170 69.295 1.420 1.00 0.00 C ATOM 1054 O LYS 138 -2.188 69.086 2.085 1.00 0.00 O ATOM 1055 CB LYS 138 -0.582 66.943 1.057 1.00 0.00 C ATOM 1056 CG LYS 138 -0.593 65.563 1.474 1.00 0.00 C ATOM 1057 CD LYS 138 -1.926 64.875 1.160 1.00 0.00 C ATOM 1058 CE LYS 138 -1.926 63.379 1.341 1.00 0.00 C ATOM 1059 NZ LYS 138 -3.301 62.855 1.581 1.00 0.00 N ATOM 1060 N GLY 139 -1.127 70.191 0.462 1.00 0.00 N ATOM 1061 CA GLY 139 -2.073 71.291 0.348 1.00 0.00 C ATOM 1062 C GLY 139 -1.657 72.238 -0.755 1.00 0.00 C ATOM 1063 O GLY 139 -1.253 71.752 -1.847 1.00 0.00 O ATOM 1064 N GLU 140 -2.311 73.361 -0.705 1.00 0.00 N ATOM 1065 CA GLU 140 -1.925 74.402 -1.674 1.00 0.00 C ATOM 1066 C GLU 140 -0.439 74.531 -1.570 1.00 0.00 C ATOM 1067 O GLU 140 0.203 74.442 -0.473 1.00 0.00 O ATOM 1068 CB GLU 140 -2.634 75.719 -1.468 1.00 0.00 C ATOM 1069 CG GLU 140 -3.396 76.069 -0.251 1.00 0.00 C ATOM 1070 CD GLU 140 -2.807 75.839 1.082 1.00 0.00 C ATOM 1071 OE1 GLU 140 -1.599 76.100 1.356 1.00 0.00 O ATOM 1072 OE2 GLU 140 -3.616 75.307 1.844 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 73.52 38.6 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 72.99 41.9 62 100.0 62 ARMSMC BURIED . . . . . . . . 74.77 30.8 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 88.45 28.2 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 81.22 30.6 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 91.67 23.1 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 81.62 38.5 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.07 17.4 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 100.62 11.1 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 101.89 6.2 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 73.11 42.9 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 66.88 38.5 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 69.13 33.3 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 54.53 50.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 97.30 0.0 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.86 16.7 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 77.86 16.7 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 92.20 0.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 34.47 50.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.93 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.93 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.1762 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.25 32 100.0 32 CRMSCA BURIED . . . . . . . . 7.07 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.02 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.31 156 100.0 156 CRMSMC BURIED . . . . . . . . 7.27 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.24 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 10.50 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 10.37 112 100.0 112 CRMSSC BURIED . . . . . . . . 9.96 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.08 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.23 240 100.0 240 CRMSALL BURIED . . . . . . . . 8.73 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.225 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 7.520 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 6.498 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.266 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 7.551 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 6.582 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.230 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 9.465 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 9.403 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 8.863 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.132 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 8.315 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 7.715 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 17 34 45 45 DISTCA CA (P) 0.00 0.00 4.44 37.78 75.56 45 DISTCA CA (RMS) 0.00 0.00 2.50 3.98 6.10 DISTCA ALL (N) 1 3 17 100 237 345 345 DISTALL ALL (P) 0.29 0.87 4.93 28.99 68.70 345 DISTALL ALL (RMS) 0.83 1.58 2.41 3.78 6.38 DISTALL END of the results output