####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS088_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS088_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 22 68 - 89 4.90 10.57 LCS_AVERAGE: 51.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 74 - 87 1.92 10.42 LONGEST_CONTINUOUS_SEGMENT: 14 75 - 88 1.72 10.00 LCS_AVERAGE: 24.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 77 - 87 0.92 10.41 LCS_AVERAGE: 16.81 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 6 15 2 3 3 5 5 14 17 17 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT S 57 S 57 3 6 19 0 3 4 5 5 7 8 13 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT C 58 C 58 5 6 19 5 6 8 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT K 59 K 59 5 6 19 5 6 6 6 6 7 9 17 20 20 21 23 24 25 27 28 29 31 33 33 LCS_GDT G 60 G 60 5 6 19 5 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT R 61 R 61 5 6 19 5 6 6 6 6 15 16 18 19 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT C 62 C 62 5 7 19 5 6 6 6 6 13 13 13 15 18 21 23 25 26 28 30 31 32 33 34 LCS_GDT F 63 F 63 3 7 19 3 3 3 5 6 9 10 11 12 14 18 21 22 26 27 29 31 32 33 34 LCS_GDT E 64 E 64 4 7 19 3 4 5 5 6 9 10 16 17 19 21 22 24 26 28 30 31 32 33 34 LCS_GDT L 65 L 65 4 7 19 3 8 9 9 10 13 13 14 17 19 20 22 23 26 27 28 28 31 32 34 LCS_GDT Q 66 Q 66 4 7 19 3 11 12 13 15 15 16 18 19 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT E 67 E 67 4 7 19 3 4 5 5 6 9 10 11 16 19 21 24 25 26 28 30 31 32 33 34 LCS_GDT V 68 V 68 4 7 22 3 4 5 5 6 9 9 11 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT G 69 G 69 4 6 22 3 3 4 5 6 9 11 13 16 18 21 23 24 26 28 30 31 32 33 34 LCS_GDT P 70 P 70 4 5 22 2 3 4 7 10 11 11 12 16 17 18 21 22 25 26 27 29 31 33 34 LCS_GDT P 71 P 71 4 5 22 3 3 4 5 10 11 11 11 16 17 18 20 22 25 26 27 29 31 33 33 LCS_GDT D 72 D 72 4 5 22 3 3 4 5 5 11 11 12 16 17 18 21 22 25 26 27 29 31 33 33 LCS_GDT C 73 C 73 4 5 22 3 3 4 5 6 9 10 11 12 17 18 21 22 25 26 27 29 31 33 34 LCS_GDT R 74 R 74 3 14 22 3 3 4 5 7 12 14 17 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT C 75 C 75 3 14 22 3 5 11 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT D 76 D 76 4 14 22 4 4 5 10 10 14 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT N 77 N 77 11 14 22 4 4 11 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT L 78 L 78 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT C 79 C 79 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT K 80 K 80 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT S 81 S 81 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT Y 82 Y 82 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT S 83 S 83 11 14 22 5 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT S 84 S 84 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT C 85 C 85 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT C 86 C 86 11 14 22 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT H 87 H 87 11 14 22 7 11 12 13 15 15 17 18 19 20 21 24 25 26 27 30 31 32 32 34 LCS_GDT D 88 D 88 8 14 22 3 8 9 10 13 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 LCS_GDT F 89 F 89 8 9 22 4 8 9 9 10 11 11 13 16 19 21 24 25 26 28 30 31 32 33 34 LCS_GDT D 90 D 90 8 9 19 4 8 9 9 10 11 11 12 16 17 18 21 22 25 26 30 31 32 33 34 LCS_GDT E 91 E 91 8 9 19 4 8 9 9 10 11 11 12 16 18 21 23 25 26 28 30 31 32 33 34 LCS_GDT L 92 L 92 8 9 19 3 8 9 9 10 11 11 12 16 17 18 21 24 25 28 30 31 32 33 34 LCS_GDT C 93 C 93 8 9 17 4 8 9 9 10 11 11 12 16 17 18 21 22 25 26 28 30 32 33 34 LCS_GDT L 94 L 94 8 9 17 3 8 9 9 10 11 11 12 16 17 18 20 22 25 26 26 28 31 33 34 LCS_GDT K 95 K 95 8 9 17 3 7 9 9 10 11 11 12 16 17 18 20 22 25 26 27 29 31 33 34 LCS_AVERAGE LCS_A: 30.60 ( 16.81 24.00 51.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 11 12 13 15 15 17 18 20 20 21 24 25 26 28 30 31 32 33 34 GDT PERCENT_AT 17.50 27.50 30.00 32.50 37.50 37.50 42.50 45.00 50.00 50.00 52.50 60.00 62.50 65.00 70.00 75.00 77.50 80.00 82.50 85.00 GDT RMS_LOCAL 0.24 0.62 0.68 0.90 1.33 1.33 2.06 2.22 3.00 2.77 3.04 3.79 4.07 4.26 5.09 5.39 5.56 5.82 6.24 6.61 GDT RMS_ALL_AT 10.73 10.50 10.48 10.51 10.38 10.38 9.75 9.98 9.38 9.75 9.56 9.20 9.10 9.66 8.19 8.19 8.20 8.08 8.31 7.73 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: Y 82 Y 82 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 4.634 0 0.300 0.300 6.279 24.048 24.048 LGA S 57 S 57 7.351 0 0.183 0.761 11.502 16.429 10.952 LGA C 58 C 58 3.099 0 0.649 0.675 4.886 40.476 47.302 LGA K 59 K 59 6.343 0 0.521 0.782 11.777 25.238 12.063 LGA G 60 G 60 1.148 0 0.192 0.192 2.903 71.190 71.190 LGA R 61 R 61 4.139 0 0.339 1.472 11.608 32.619 21.732 LGA C 62 C 62 8.515 0 0.060 0.259 10.147 8.214 5.476 LGA F 63 F 63 10.559 0 0.473 0.592 18.308 1.548 0.563 LGA E 64 E 64 7.785 0 0.178 1.037 10.637 3.333 2.540 LGA L 65 L 65 7.941 0 0.098 0.917 10.952 11.071 6.071 LGA Q 66 Q 66 2.234 0 0.077 1.251 6.383 48.810 42.381 LGA E 67 E 67 6.662 0 0.596 1.323 9.074 15.119 9.259 LGA V 68 V 68 10.298 0 0.478 1.325 12.237 1.190 0.680 LGA G 69 G 69 13.761 0 0.240 0.240 13.969 0.000 0.000 LGA P 70 P 70 17.526 0 0.047 0.352 19.993 0.000 0.000 LGA P 71 P 71 17.191 0 0.322 0.398 20.362 0.000 0.000 LGA D 72 D 72 16.883 3 0.698 0.664 18.103 0.000 0.000 LGA C 73 C 73 13.833 0 0.583 1.046 17.220 0.000 0.000 LGA R 74 R 74 6.664 0 0.693 0.835 9.501 19.167 15.801 LGA C 75 C 75 2.269 0 0.214 0.627 5.986 54.167 49.206 LGA D 76 D 76 4.817 0 0.675 1.158 9.402 40.357 22.560 LGA N 77 N 77 2.310 0 0.143 0.556 2.983 67.024 63.036 LGA L 78 L 78 1.348 0 0.209 0.967 5.644 83.929 61.429 LGA C 79 C 79 0.394 0 0.037 0.677 2.268 97.619 92.540 LGA K 80 K 80 0.843 0 0.056 0.913 7.443 90.476 63.968 LGA S 81 S 81 1.179 0 0.040 0.395 2.276 81.429 78.651 LGA Y 82 Y 82 1.220 0 0.054 0.718 2.964 81.429 73.849 LGA S 83 S 83 1.102 0 0.242 0.450 3.902 88.333 78.254 LGA S 84 S 84 0.582 0 0.372 0.441 2.146 88.452 83.333 LGA C 85 C 85 0.890 0 0.169 0.258 1.658 86.071 83.095 LGA C 86 C 86 1.084 0 0.136 0.275 1.897 79.286 78.571 LGA H 87 H 87 1.491 0 0.534 1.179 5.621 73.571 55.857 LGA D 88 D 88 3.246 0 0.548 0.451 7.021 37.738 30.774 LGA F 89 F 89 8.304 0 0.218 1.601 12.489 5.476 3.420 LGA D 90 D 90 14.390 0 0.097 0.682 16.807 0.000 0.000 LGA E 91 E 91 13.322 0 0.145 1.253 16.688 0.000 0.000 LGA L 92 L 92 14.025 0 0.086 0.858 17.402 0.000 0.060 LGA C 93 C 93 16.727 0 0.035 0.168 21.376 0.000 0.000 LGA L 94 L 94 22.086 0 0.061 1.197 24.368 0.000 0.000 LGA K 95 K 95 24.296 0 0.041 1.286 28.363 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 7.637 7.507 8.691 34.345 29.717 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 18 2.22 45.000 39.596 0.776 LGA_LOCAL RMSD: 2.218 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 9.979 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 7.637 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.675934 * X + 0.591025 * Y + -0.440230 * Z + 8.241927 Y_new = 0.523427 * X + 0.035497 * Y + 0.851331 * Z + 101.526741 Z_new = 0.518785 * X + -0.805872 * Y + -0.285365 * Z + 23.078871 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.658920 -0.545429 -1.911125 [DEG: 37.7533 -31.2508 -109.4994 ] ZXZ: -2.664352 1.860183 2.569620 [DEG: -152.6562 106.5806 147.2284 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS088_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS088_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 18 2.22 39.596 7.64 REMARK ---------------------------------------------------------- MOLECULE T0543TS088_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 422 N GLY 56 30.880 69.766 21.894 1.00 0.00 N ATOM 423 CA GLY 56 31.284 69.716 20.480 1.00 0.00 C ATOM 424 C GLY 56 30.095 69.517 19.451 1.00 0.00 C ATOM 425 O GLY 56 30.222 70.082 18.385 1.00 0.00 O ATOM 426 N SER 57 28.940 68.894 19.815 1.00 0.00 N ATOM 427 CA SER 57 27.822 68.719 18.860 1.00 0.00 C ATOM 428 C SER 57 27.000 70.022 18.685 1.00 0.00 C ATOM 429 O SER 57 26.099 70.284 19.492 1.00 0.00 O ATOM 430 CB SER 57 27.025 67.480 19.287 1.00 0.00 C ATOM 431 OG SER 57 27.242 66.988 20.648 1.00 0.00 O ATOM 432 N CYS 58 26.971 70.473 17.420 1.00 0.00 N ATOM 433 CA CYS 58 26.320 71.690 16.938 1.00 0.00 C ATOM 434 C CYS 58 25.536 71.330 15.652 1.00 0.00 C ATOM 435 O CYS 58 26.099 70.582 14.819 1.00 0.00 O ATOM 436 CB CYS 58 27.457 72.630 16.527 1.00 0.00 C ATOM 437 SG CYS 58 28.891 72.744 17.615 1.00 0.00 S ATOM 438 N LYS 59 24.469 72.086 15.309 1.00 0.00 N ATOM 439 CA LYS 59 23.704 71.662 14.128 1.00 0.00 C ATOM 440 C LYS 59 24.546 71.589 12.827 1.00 0.00 C ATOM 441 O LYS 59 24.834 70.490 12.362 1.00 0.00 O ATOM 442 CB LYS 59 22.557 72.552 13.836 1.00 0.00 C ATOM 443 CG LYS 59 21.835 73.702 14.388 1.00 0.00 C ATOM 444 CD LYS 59 21.328 74.660 13.304 1.00 0.00 C ATOM 445 CE LYS 59 20.373 75.719 13.789 1.00 0.00 C ATOM 446 NZ LYS 59 20.366 76.907 12.887 1.00 0.00 N ATOM 447 N GLY 60 25.095 72.731 12.367 1.00 0.00 N ATOM 448 CA GLY 60 25.863 72.865 11.185 1.00 0.00 C ATOM 449 C GLY 60 27.381 72.569 11.362 1.00 0.00 C ATOM 450 O GLY 60 27.969 72.146 10.356 1.00 0.00 O ATOM 451 N ARG 61 27.972 72.770 12.527 1.00 0.00 N ATOM 452 CA ARG 61 29.380 72.585 12.674 1.00 0.00 C ATOM 453 C ARG 61 29.843 71.137 12.484 1.00 0.00 C ATOM 454 O ARG 61 30.658 70.954 11.575 1.00 0.00 O ATOM 455 CB ARG 61 29.970 73.302 13.886 1.00 0.00 C ATOM 456 CG ARG 61 29.396 74.586 14.335 1.00 0.00 C ATOM 457 CD ARG 61 29.574 75.656 13.288 1.00 0.00 C ATOM 458 NE ARG 61 28.567 76.710 13.476 1.00 0.00 N ATOM 459 CZ ARG 61 28.485 77.858 12.767 1.00 0.00 C ATOM 460 NH1 ARG 61 29.423 78.209 11.873 1.00 0.00 H ATOM 461 NH2 ARG 61 27.352 78.561 12.852 1.00 0.00 H ATOM 462 N CYS 62 29.293 70.153 13.229 1.00 0.00 N ATOM 463 CA CYS 62 29.700 68.786 12.973 1.00 0.00 C ATOM 464 C CYS 62 28.574 68.096 12.191 1.00 0.00 C ATOM 465 O CYS 62 27.448 67.905 12.695 1.00 0.00 O ATOM 466 CB CYS 62 30.066 68.049 14.249 1.00 0.00 C ATOM 467 SG CYS 62 30.813 69.002 15.563 1.00 0.00 S ATOM 468 N PHE 63 28.885 67.900 10.894 1.00 0.00 N ATOM 469 CA PHE 63 27.890 67.268 10.070 1.00 0.00 C ATOM 470 C PHE 63 27.439 65.856 10.567 1.00 0.00 C ATOM 471 O PHE 63 26.288 65.798 11.032 1.00 0.00 O ATOM 472 CB PHE 63 28.288 67.160 8.614 1.00 0.00 C ATOM 473 CG PHE 63 28.881 68.204 7.777 1.00 0.00 C ATOM 474 CD1 PHE 63 29.025 69.485 8.228 1.00 0.00 C ATOM 475 CD2 PHE 63 29.462 67.816 6.592 1.00 0.00 C ATOM 476 CE1 PHE 63 29.769 70.370 7.514 1.00 0.00 C ATOM 477 CE2 PHE 63 30.219 68.716 5.873 1.00 0.00 C ATOM 478 CZ PHE 63 30.374 69.997 6.337 1.00 0.00 C ATOM 479 N GLU 64 28.252 64.775 10.432 1.00 0.00 N ATOM 480 CA GLU 64 27.777 63.478 11.013 1.00 0.00 C ATOM 481 C GLU 64 28.638 63.069 12.164 1.00 0.00 C ATOM 482 O GLU 64 29.789 62.649 11.967 1.00 0.00 O ATOM 483 CB GLU 64 27.647 62.362 9.997 1.00 0.00 C ATOM 484 CG GLU 64 28.290 62.411 8.651 1.00 0.00 C ATOM 485 CD GLU 64 29.702 62.816 8.521 1.00 0.00 C ATOM 486 OE1 GLU 64 30.608 62.422 9.315 1.00 0.00 O ATOM 487 OE2 GLU 64 29.855 63.621 7.602 1.00 0.00 O ATOM 488 N LEU 65 28.179 63.397 13.376 1.00 0.00 N ATOM 489 CA LEU 65 28.930 62.967 14.527 1.00 0.00 C ATOM 490 C LEU 65 28.260 61.800 15.366 1.00 0.00 C ATOM 491 O LEU 65 28.987 60.860 15.712 1.00 0.00 O ATOM 492 CB LEU 65 29.282 64.244 15.330 1.00 0.00 C ATOM 493 CG LEU 65 28.097 65.190 15.611 1.00 0.00 C ATOM 494 CD1 LEU 65 26.998 64.498 16.324 1.00 0.00 C ATOM 495 CD2 LEU 65 28.507 66.433 16.377 1.00 0.00 C ATOM 496 N GLN 66 26.908 61.775 15.515 1.00 0.00 N ATOM 497 CA GLN 66 26.102 60.715 16.195 1.00 0.00 C ATOM 498 C GLN 66 25.005 60.278 15.253 1.00 0.00 C ATOM 499 O GLN 66 24.224 61.139 14.827 1.00 0.00 O ATOM 500 CB GLN 66 25.609 61.090 17.589 1.00 0.00 C ATOM 501 CG GLN 66 26.525 61.892 18.444 1.00 0.00 C ATOM 502 CD GLN 66 28.017 61.722 18.517 1.00 0.00 C ATOM 503 OE1 GLN 66 28.550 60.726 19.047 1.00 0.00 O ATOM 504 NE2 GLN 66 28.821 62.745 18.058 1.00 0.00 N ATOM 505 N GLU 67 24.594 59.063 15.482 1.00 0.00 N ATOM 506 CA GLU 67 23.538 58.391 14.735 1.00 0.00 C ATOM 507 C GLU 67 22.084 58.741 15.186 1.00 0.00 C ATOM 508 O GLU 67 21.330 59.150 14.285 1.00 0.00 O ATOM 509 CB GLU 67 23.687 56.888 14.859 1.00 0.00 C ATOM 510 CG GLU 67 24.906 56.125 15.235 1.00 0.00 C ATOM 511 CD GLU 67 26.143 56.533 14.459 1.00 0.00 C ATOM 512 OE1 GLU 67 26.217 56.217 13.228 1.00 0.00 O ATOM 513 OE2 GLU 67 27.052 57.183 15.007 1.00 0.00 O ATOM 514 N VAL 68 21.773 58.858 16.495 1.00 0.00 N ATOM 515 CA VAL 68 20.402 58.969 16.839 1.00 0.00 C ATOM 516 C VAL 68 19.711 60.352 16.703 1.00 0.00 C ATOM 517 O VAL 68 18.893 60.449 15.780 1.00 0.00 O ATOM 518 CB VAL 68 20.160 58.295 18.201 1.00 0.00 C ATOM 519 CG1 VAL 68 21.320 57.616 18.831 1.00 0.00 C ATOM 520 CG2 VAL 68 19.353 59.134 19.243 1.00 0.00 C ATOM 521 N GLY 69 19.911 61.385 17.525 1.00 0.00 N ATOM 522 CA GLY 69 19.080 62.592 17.288 1.00 0.00 C ATOM 523 C GLY 69 19.505 63.489 16.064 1.00 0.00 C ATOM 524 O GLY 69 20.744 63.579 15.851 1.00 0.00 O ATOM 525 N PRO 70 18.658 63.963 15.057 1.00 0.00 N ATOM 526 CA PRO 70 19.262 64.874 14.137 1.00 0.00 C ATOM 527 C PRO 70 19.907 66.023 14.903 1.00 0.00 C ATOM 528 O PRO 70 19.294 66.449 15.941 1.00 0.00 O ATOM 529 CB PRO 70 18.220 65.338 13.076 1.00 0.00 C ATOM 530 CG PRO 70 17.046 65.441 14.094 1.00 0.00 C ATOM 531 CD PRO 70 17.136 64.196 14.944 1.00 0.00 C ATOM 532 N PRO 71 20.780 66.855 14.267 1.00 0.00 N ATOM 533 CA PRO 71 21.422 67.874 14.995 1.00 0.00 C ATOM 534 C PRO 71 20.562 68.888 15.817 1.00 0.00 C ATOM 535 O PRO 71 21.009 69.188 16.894 1.00 0.00 O ATOM 536 CB PRO 71 22.522 68.458 14.216 1.00 0.00 C ATOM 537 CG PRO 71 21.869 68.388 12.768 1.00 0.00 C ATOM 538 CD PRO 71 21.028 67.115 12.808 1.00 0.00 C ATOM 539 N ASP 72 19.439 69.600 15.335 1.00 0.00 N ATOM 540 CA ASP 72 18.823 70.573 16.291 1.00 0.00 C ATOM 541 C ASP 72 18.677 70.037 17.767 1.00 0.00 C ATOM 542 O ASP 72 18.762 70.883 18.667 1.00 0.00 O ATOM 543 CB ASP 72 17.466 70.891 15.646 1.00 0.00 C ATOM 544 CG ASP 72 17.326 70.956 14.148 1.00 0.00 C ATOM 545 OD1 ASP 72 18.293 71.299 13.373 1.00 0.00 O ATOM 546 OD2 ASP 72 16.226 70.629 13.612 1.00 0.00 O ATOM 547 N CYS 73 18.014 68.891 18.006 1.00 0.00 N ATOM 548 CA CYS 73 17.943 68.331 19.378 1.00 0.00 C ATOM 549 C CYS 73 19.387 68.084 19.875 1.00 0.00 C ATOM 550 O CYS 73 19.655 68.496 20.991 1.00 0.00 O ATOM 551 CB CYS 73 17.128 67.032 19.345 1.00 0.00 C ATOM 552 SG CYS 73 15.727 66.949 18.251 1.00 0.00 S ATOM 553 N ARG 74 20.196 67.220 19.259 1.00 0.00 N ATOM 554 CA ARG 74 21.612 67.045 19.649 1.00 0.00 C ATOM 555 C ARG 74 22.349 68.324 19.974 1.00 0.00 C ATOM 556 O ARG 74 23.388 68.201 20.520 1.00 0.00 O ATOM 557 CB ARG 74 22.509 66.251 18.749 1.00 0.00 C ATOM 558 CG ARG 74 21.976 65.226 17.827 1.00 0.00 C ATOM 559 CD ARG 74 21.586 63.898 18.467 1.00 0.00 C ATOM 560 NE ARG 74 22.331 63.469 19.596 1.00 0.00 N ATOM 561 CZ ARG 74 22.814 62.231 19.818 1.00 0.00 C ATOM 562 NH1 ARG 74 22.753 61.186 18.994 1.00 0.00 H ATOM 563 NH2 ARG 74 23.475 62.056 20.948 1.00 0.00 H ATOM 564 N CYS 75 22.104 69.464 19.358 1.00 0.00 N ATOM 565 CA CYS 75 22.904 70.650 19.759 1.00 0.00 C ATOM 566 C CYS 75 22.410 71.294 21.084 1.00 0.00 C ATOM 567 O CYS 75 23.235 72.026 21.666 1.00 0.00 O ATOM 568 CB CYS 75 23.095 71.680 18.635 1.00 0.00 C ATOM 569 SG CYS 75 21.498 72.098 17.857 1.00 0.00 S ATOM 570 N ASP 76 21.113 71.552 21.249 1.00 0.00 N ATOM 571 CA ASP 76 20.627 72.185 22.463 1.00 0.00 C ATOM 572 C ASP 76 19.864 71.253 23.466 1.00 0.00 C ATOM 573 O ASP 76 19.825 71.635 24.628 1.00 0.00 O ATOM 574 CB ASP 76 19.779 73.399 21.992 1.00 0.00 C ATOM 575 CG ASP 76 20.162 74.126 20.737 1.00 0.00 C ATOM 576 OD1 ASP 76 21.379 74.234 20.336 1.00 0.00 O ATOM 577 OD2 ASP 76 19.257 74.651 20.026 1.00 0.00 O ATOM 578 N ASN 77 19.062 70.244 23.016 1.00 0.00 N ATOM 579 CA ASN 77 18.284 69.471 24.005 1.00 0.00 C ATOM 580 C ASN 77 19.086 68.350 24.694 1.00 0.00 C ATOM 581 O ASN 77 19.155 68.398 25.938 1.00 0.00 O ATOM 582 CB ASN 77 16.877 69.109 23.535 1.00 0.00 C ATOM 583 CG ASN 77 16.291 69.417 22.216 1.00 0.00 C ATOM 584 OD1 ASN 77 16.550 70.351 21.383 1.00 0.00 O ATOM 585 ND2 ASN 77 15.374 68.544 21.736 1.00 0.00 N ATOM 586 N LEU 78 19.668 67.353 23.965 1.00 0.00 N ATOM 587 CA LEU 78 20.488 66.380 24.693 1.00 0.00 C ATOM 588 C LEU 78 21.766 67.068 25.292 1.00 0.00 C ATOM 589 O LEU 78 22.170 66.608 26.353 1.00 0.00 O ATOM 590 CB LEU 78 20.799 65.068 24.066 1.00 0.00 C ATOM 591 CG LEU 78 19.979 64.596 22.954 1.00 0.00 C ATOM 592 CD1 LEU 78 19.410 65.644 22.091 1.00 0.00 C ATOM 593 CD2 LEU 78 20.518 63.421 22.171 1.00 0.00 C ATOM 594 N CYS 79 22.363 68.145 24.696 1.00 0.00 N ATOM 595 CA CYS 79 23.490 68.780 25.398 1.00 0.00 C ATOM 596 C CYS 79 23.056 69.489 26.728 1.00 0.00 C ATOM 597 O CYS 79 23.855 69.372 27.686 1.00 0.00 O ATOM 598 CB CYS 79 24.274 69.820 24.554 1.00 0.00 C ATOM 599 SG CYS 79 24.349 69.407 22.773 1.00 0.00 S ATOM 600 N LYS 80 21.921 70.193 26.808 1.00 0.00 N ATOM 601 CA LYS 80 21.652 70.894 28.051 1.00 0.00 C ATOM 602 C LYS 80 21.510 69.974 29.232 1.00 0.00 C ATOM 603 O LYS 80 21.897 70.416 30.326 1.00 0.00 O ATOM 604 CB LYS 80 20.429 71.719 27.927 1.00 0.00 C ATOM 605 CG LYS 80 19.113 71.932 27.352 1.00 0.00 C ATOM 606 CD LYS 80 17.963 72.242 28.331 1.00 0.00 C ATOM 607 CE LYS 80 16.601 71.862 27.719 1.00 0.00 C ATOM 608 NZ LYS 80 15.687 73.047 27.884 1.00 0.00 N ATOM 609 N SER 81 20.756 68.874 29.143 1.00 0.00 N ATOM 610 CA SER 81 20.581 67.863 30.182 1.00 0.00 C ATOM 611 C SER 81 21.945 67.341 30.739 1.00 0.00 C ATOM 612 O SER 81 21.993 67.127 31.957 1.00 0.00 O ATOM 613 CB SER 81 19.755 66.681 29.606 1.00 0.00 C ATOM 614 OG SER 81 19.562 66.723 28.203 1.00 0.00 O ATOM 615 N TYR 82 22.956 66.981 29.895 1.00 0.00 N ATOM 616 CA TYR 82 24.318 66.535 30.279 1.00 0.00 C ATOM 617 C TYR 82 25.318 67.675 30.570 1.00 0.00 C ATOM 618 O TYR 82 26.465 67.341 30.876 1.00 0.00 O ATOM 619 CB TYR 82 24.831 65.407 29.374 1.00 0.00 C ATOM 620 CG TYR 82 23.780 64.562 28.694 1.00 0.00 C ATOM 621 CD1 TYR 82 22.731 64.001 29.442 1.00 0.00 C ATOM 622 CD2 TYR 82 23.783 64.417 27.301 1.00 0.00 C ATOM 623 CE1 TYR 82 21.685 63.334 28.801 1.00 0.00 C ATOM 624 CE2 TYR 82 22.744 63.741 26.652 1.00 0.00 C ATOM 625 CZ TYR 82 21.696 63.215 27.409 1.00 0.00 C ATOM 626 OH TYR 82 20.620 62.647 26.758 1.00 0.00 H ATOM 627 N SER 83 24.839 68.884 30.835 1.00 0.00 N ATOM 628 CA SER 83 25.605 70.056 31.220 1.00 0.00 C ATOM 629 C SER 83 26.812 70.373 30.295 1.00 0.00 C ATOM 630 O SER 83 27.763 70.972 30.794 1.00 0.00 O ATOM 631 CB SER 83 25.937 69.856 32.750 1.00 0.00 C ATOM 632 OG SER 83 25.683 68.440 33.155 1.00 0.00 O ATOM 633 N SER 84 26.717 70.046 28.987 1.00 0.00 N ATOM 634 CA SER 84 27.739 70.363 28.058 1.00 0.00 C ATOM 635 C SER 84 27.083 70.801 26.716 1.00 0.00 C ATOM 636 O SER 84 26.914 69.995 25.815 1.00 0.00 O ATOM 637 CB SER 84 28.645 69.079 27.934 1.00 0.00 C ATOM 638 OG SER 84 28.085 67.956 28.744 1.00 0.00 O ATOM 639 N CYS 85 27.217 72.084 26.489 1.00 0.00 N ATOM 640 CA CYS 85 26.653 72.816 25.365 1.00 0.00 C ATOM 641 C CYS 85 27.788 73.636 24.790 1.00 0.00 C ATOM 642 O CYS 85 28.310 74.518 25.508 1.00 0.00 O ATOM 643 CB CYS 85 25.478 73.694 25.831 1.00 0.00 C ATOM 644 SG CYS 85 24.384 73.018 27.062 1.00 0.00 S ATOM 645 N CYS 86 27.739 73.708 23.478 1.00 0.00 N ATOM 646 CA CYS 86 28.775 74.365 22.756 1.00 0.00 C ATOM 647 C CYS 86 28.520 75.860 22.571 1.00 0.00 C ATOM 648 O CYS 86 27.476 76.282 22.053 1.00 0.00 O ATOM 649 CB CYS 86 28.753 73.761 21.375 1.00 0.00 C ATOM 650 SG CYS 86 28.420 71.975 21.213 1.00 0.00 S ATOM 651 N HIS 87 29.334 76.585 23.258 1.00 0.00 N ATOM 652 CA HIS 87 29.407 78.021 23.211 1.00 0.00 C ATOM 653 C HIS 87 30.186 78.343 21.958 1.00 0.00 C ATOM 654 O HIS 87 29.809 77.758 20.922 1.00 0.00 O ATOM 655 CB HIS 87 30.143 78.361 24.456 1.00 0.00 C ATOM 656 CG HIS 87 31.448 77.879 24.906 1.00 0.00 C ATOM 657 ND1 HIS 87 32.685 78.471 24.845 1.00 0.00 N ATOM 658 CD2 HIS 87 31.684 76.680 25.459 1.00 0.00 C ATOM 659 CE1 HIS 87 33.635 77.719 25.262 1.00 0.00 C ATOM 660 NE2 HIS 87 33.051 76.596 25.656 1.00 0.00 N ATOM 661 N ASP 88 30.860 79.475 21.830 1.00 0.00 N ATOM 662 CA ASP 88 31.645 79.597 20.609 1.00 0.00 C ATOM 663 C ASP 88 32.478 78.359 20.667 1.00 0.00 C ATOM 664 O ASP 88 33.237 78.187 21.664 1.00 0.00 O ATOM 665 CB ASP 88 32.741 80.707 20.515 1.00 0.00 C ATOM 666 CG ASP 88 33.219 81.284 21.862 1.00 0.00 C ATOM 667 OD1 ASP 88 32.716 81.007 22.953 1.00 0.00 O ATOM 668 OD2 ASP 88 34.314 81.953 21.800 1.00 0.00 O ATOM 669 N PHE 89 32.714 77.732 19.583 1.00 0.00 N ATOM 670 CA PHE 89 33.510 76.557 19.604 1.00 0.00 C ATOM 671 C PHE 89 35.031 76.837 19.362 1.00 0.00 C ATOM 672 O PHE 89 35.829 76.002 19.786 1.00 0.00 O ATOM 673 CB PHE 89 32.902 75.658 18.590 1.00 0.00 C ATOM 674 CG PHE 89 31.482 75.708 18.221 1.00 0.00 C ATOM 675 CD1 PHE 89 31.090 75.981 16.902 1.00 0.00 C ATOM 676 CD2 PHE 89 30.504 75.539 19.216 1.00 0.00 C ATOM 677 CE1 PHE 89 29.737 76.069 16.580 1.00 0.00 C ATOM 678 CE2 PHE 89 29.139 75.663 18.905 1.00 0.00 C ATOM 679 CZ PHE 89 28.757 75.919 17.569 1.00 0.00 C ATOM 680 N ASP 90 35.435 77.828 18.532 1.00 0.00 N ATOM 681 CA ASP 90 36.825 78.121 18.415 1.00 0.00 C ATOM 682 C ASP 90 37.461 78.064 19.842 1.00 0.00 C ATOM 683 O ASP 90 38.668 77.892 19.872 1.00 0.00 O ATOM 684 CB ASP 90 36.912 79.581 17.908 1.00 0.00 C ATOM 685 CG ASP 90 35.970 79.963 16.746 1.00 0.00 C ATOM 686 OD1 ASP 90 35.482 79.119 15.908 1.00 0.00 O ATOM 687 OD2 ASP 90 35.624 81.176 16.632 1.00 0.00 O ATOM 688 N GLU 91 36.868 78.705 20.889 1.00 0.00 N ATOM 689 CA GLU 91 37.488 78.572 22.178 1.00 0.00 C ATOM 690 C GLU 91 37.310 77.220 22.963 1.00 0.00 C ATOM 691 O GLU 91 38.300 76.786 23.469 1.00 0.00 O ATOM 692 CB GLU 91 37.647 79.803 23.017 1.00 0.00 C ATOM 693 CG GLU 91 37.091 81.121 22.664 1.00 0.00 C ATOM 694 CD GLU 91 37.774 81.665 21.425 1.00 0.00 C ATOM 695 OE1 GLU 91 39.006 81.978 21.500 1.00 0.00 O ATOM 696 OE2 GLU 91 37.151 81.781 20.354 1.00 0.00 O ATOM 697 N LEU 92 36.097 76.679 23.238 1.00 0.00 N ATOM 698 CA LEU 92 35.867 75.390 23.938 1.00 0.00 C ATOM 699 C LEU 92 36.546 74.190 23.170 1.00 0.00 C ATOM 700 O LEU 92 36.964 73.255 23.868 1.00 0.00 O ATOM 701 CB LEU 92 34.412 75.026 24.092 1.00 0.00 C ATOM 702 CG LEU 92 33.476 75.405 22.887 1.00 0.00 C ATOM 703 CD1 LEU 92 33.893 74.584 21.726 1.00 0.00 C ATOM 704 CD2 LEU 92 32.001 75.191 23.166 1.00 0.00 C ATOM 705 N CYS 93 36.514 74.105 21.805 1.00 0.00 N ATOM 706 CA CYS 93 37.235 73.004 21.091 1.00 0.00 C ATOM 707 C CYS 93 38.750 73.275 21.178 1.00 0.00 C ATOM 708 O CYS 93 39.456 72.285 21.281 1.00 0.00 O ATOM 709 CB CYS 93 36.684 72.708 19.688 1.00 0.00 C ATOM 710 SG CYS 93 34.968 73.021 19.410 1.00 0.00 S ATOM 711 N LEU 94 39.237 74.530 21.253 1.00 0.00 N ATOM 712 CA LEU 94 40.617 74.717 21.431 1.00 0.00 C ATOM 713 C LEU 94 41.051 75.137 22.885 1.00 0.00 C ATOM 714 O LEU 94 42.033 75.890 22.962 1.00 0.00 O ATOM 715 CB LEU 94 41.412 75.372 20.271 1.00 0.00 C ATOM 716 CG LEU 94 41.093 75.128 18.835 1.00 0.00 C ATOM 717 CD1 LEU 94 40.527 73.748 18.468 1.00 0.00 C ATOM 718 CD2 LEU 94 40.018 76.174 18.364 1.00 0.00 C ATOM 719 N LYS 95 40.277 74.859 23.967 1.00 0.00 N ATOM 720 CA LYS 95 40.790 75.188 25.326 1.00 0.00 C ATOM 721 C LYS 95 42.217 74.569 25.476 1.00 0.00 C ATOM 722 O LYS 95 42.411 73.360 25.209 1.00 0.00 O ATOM 723 CB LYS 95 39.974 74.609 26.418 1.00 0.00 C ATOM 724 CG LYS 95 38.677 73.987 26.657 1.00 0.00 C ATOM 725 CD LYS 95 38.730 72.958 27.791 1.00 0.00 C ATOM 726 CE LYS 95 37.388 72.453 28.253 1.00 0.00 C ATOM 727 NZ LYS 95 37.499 71.113 28.901 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 69.09 50.0 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 65.98 55.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 76.43 36.4 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.85 27.8 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 83.47 28.6 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 84.77 28.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 91.42 27.3 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 107.77 8.7 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 105.60 11.8 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 111.95 5.6 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 91.12 20.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.06 22.2 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 61.82 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 72.04 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 72.14 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 50.00 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 50.00 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 50.22 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 49.11 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.64 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.64 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.1909 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.13 29 100.0 29 CRMSCA BURIED . . . . . . . . 6.16 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.78 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 8.24 142 100.0 142 CRMSMC BURIED . . . . . . . . 6.46 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 10.02 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 9.93 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 10.99 103 100.0 103 CRMSSC BURIED . . . . . . . . 6.92 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 8.79 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.47 219 100.0 219 CRMSALL BURIED . . . . . . . . 6.70 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.043 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 7.521 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 5.783 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.146 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 7.597 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 5.983 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 9.272 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 9.125 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 10.396 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 6.377 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 8.032 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 8.741 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 6.182 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 2 13 32 40 40 DISTCA CA (P) 0.00 0.00 5.00 32.50 80.00 40 DISTCA CA (RMS) 0.00 0.00 2.45 3.92 6.35 DISTCA ALL (N) 0 0 14 69 211 303 303 DISTALL ALL (P) 0.00 0.00 4.62 22.77 69.64 303 DISTALL ALL (RMS) 0.00 0.00 2.56 3.83 6.42 DISTALL END of the results output