####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS065_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS065_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.51 2.51 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 69 - 93 1.95 2.74 LONGEST_CONTINUOUS_SEGMENT: 25 70 - 94 1.93 2.69 LCS_AVERAGE: 50.56 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 72 - 94 0.86 2.63 LCS_AVERAGE: 38.75 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 11 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 11 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 11 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 11 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 11 40 15 26 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 11 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 11 40 3 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 4 11 40 3 4 5 12 18 28 35 36 37 38 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 11 40 3 17 27 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 5 11 40 4 4 5 30 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 5 11 40 4 4 5 20 24 27 33 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 5 7 40 6 17 27 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 5 7 40 4 4 5 5 6 32 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 5 25 40 0 3 5 14 23 34 35 35 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 3 25 40 2 3 5 6 7 14 25 32 36 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 3 25 40 2 3 4 4 7 14 22 32 36 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 23 25 40 4 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 23 25 40 6 23 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 23 25 40 13 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 23 25 40 10 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 23 25 40 9 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 23 25 40 7 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 23 25 40 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 23 25 40 14 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 23 25 40 12 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 23 25 40 6 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 23 25 40 14 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 23 25 40 14 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 23 25 40 3 6 27 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 24 40 3 3 3 4 5 5 6 10 35 39 39 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 63.10 ( 38.75 50.56 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 15 27 29 31 33 34 35 36 37 39 39 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 37.50 67.50 72.50 77.50 82.50 85.00 87.50 90.00 92.50 97.50 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.63 0.70 0.87 1.01 1.25 1.37 1.53 1.68 2.42 2.27 2.51 2.51 2.51 2.51 2.51 2.51 2.51 2.51 2.51 GDT RMS_ALL_AT 2.71 2.64 2.64 2.63 2.64 2.58 2.60 2.70 2.64 2.52 2.53 2.51 2.51 2.51 2.51 2.51 2.51 2.51 2.51 2.51 # Checking swapping # possible swapping detected: E 67 E 67 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 0.507 0 0.199 0.199 1.516 90.833 90.833 LGA S 57 S 57 0.421 0 0.065 0.060 0.488 100.000 100.000 LGA C 58 C 58 0.271 0 0.105 0.193 0.350 100.000 100.000 LGA K 59 K 59 0.800 0 0.043 1.098 5.242 92.857 70.794 LGA G 60 G 60 1.354 0 0.082 0.082 1.388 81.429 81.429 LGA R 61 R 61 0.485 0 0.107 1.015 3.010 95.238 85.281 LGA C 62 C 62 1.030 0 0.589 0.908 3.885 83.690 76.587 LGA F 63 F 63 4.420 0 0.301 1.274 12.917 46.905 19.307 LGA E 64 E 64 1.740 0 0.556 0.629 3.176 67.262 67.778 LGA L 65 L 65 2.268 0 0.674 0.629 5.174 56.190 48.571 LGA Q 66 Q 66 4.156 0 0.033 1.169 10.890 56.548 28.201 LGA E 67 E 67 2.080 0 0.062 1.260 10.060 68.929 35.873 LGA V 68 V 68 3.409 0 0.604 0.977 7.849 53.690 35.170 LGA G 69 G 69 4.752 0 0.187 0.187 4.752 40.476 40.476 LGA P 70 P 70 8.174 0 0.662 0.704 11.426 9.524 5.850 LGA P 71 P 71 7.557 0 0.517 0.612 10.871 17.381 10.204 LGA D 72 D 72 1.197 3 0.613 0.603 3.589 74.167 44.226 LGA C 73 C 73 0.595 0 0.198 0.232 1.639 88.214 86.032 LGA R 74 R 74 0.420 0 0.024 1.134 6.170 100.000 75.195 LGA C 75 C 75 0.414 0 0.139 0.140 1.304 92.976 92.143 LGA D 76 D 76 0.882 0 0.031 0.388 1.745 85.952 82.619 LGA N 77 N 77 1.918 0 0.074 0.787 3.500 75.000 65.179 LGA L 78 L 78 1.070 0 0.132 1.282 3.528 81.429 75.714 LGA C 79 C 79 0.573 0 0.032 0.057 0.732 95.238 93.651 LGA K 80 K 80 0.695 0 0.024 0.843 5.004 90.476 67.407 LGA S 81 S 81 0.787 0 0.040 0.043 1.279 90.476 88.968 LGA Y 82 Y 82 0.690 0 0.085 0.201 1.519 90.595 86.032 LGA S 83 S 83 1.109 0 0.239 0.225 2.026 85.952 80.238 LGA S 84 S 84 0.997 0 0.088 0.619 1.496 92.976 89.127 LGA C 85 C 85 0.191 0 0.077 0.120 0.649 100.000 96.825 LGA C 86 C 86 0.273 0 0.043 0.253 1.304 100.000 96.905 LGA H 87 H 87 0.650 0 0.058 1.137 7.659 95.238 60.143 LGA D 88 D 88 0.346 0 0.162 0.164 1.318 100.000 94.107 LGA F 89 F 89 0.376 0 0.089 0.180 0.493 100.000 100.000 LGA D 90 D 90 0.466 0 0.072 0.704 1.651 95.238 88.452 LGA E 91 E 91 0.732 0 0.135 1.248 4.615 92.857 70.212 LGA L 92 L 92 0.469 0 0.136 0.168 1.519 100.000 90.774 LGA C 93 C 93 0.306 0 0.588 0.805 4.162 86.905 76.270 LGA L 94 L 94 2.217 0 0.481 0.875 6.034 45.952 43.929 LGA K 95 K 95 7.851 0 0.199 1.646 13.440 10.238 4.709 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.510 2.348 3.883 78.271 68.630 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 36 1.53 83.750 77.564 2.214 LGA_LOCAL RMSD: 1.526 Number of atoms: 36 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.702 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.510 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.816167 * X + -0.577028 * Y + 0.030179 * Z + 18.564341 Y_new = 0.437881 * X + 0.651741 * Y + 0.619269 * Z + 92.282242 Z_new = -0.377005 * X + -0.492212 * Y + 0.784599 * Z + 6.063013 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.492426 0.386560 -0.560282 [DEG: 28.2140 22.1483 -32.1018 ] ZXZ: 3.092897 0.668748 -2.487968 [DEG: 177.2100 38.3164 -142.5500 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS065_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS065_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 36 1.53 77.564 2.51 REMARK ---------------------------------------------------------- MOLECULE T0543TS065_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gsnA 3ismA 2o3bA 1ql0A 2ys0A ATOM 422 N GLY 56 34.244 71.177 18.577 1.00 87.73 N ATOM 423 CA GLY 56 34.380 72.324 19.431 1.00 87.73 C ATOM 424 C GLY 56 33.466 73.443 19.026 1.00 87.73 C ATOM 425 O GLY 56 33.274 74.375 19.808 1.00 87.73 O ATOM 426 N SER 57 32.876 73.415 17.818 1.00 54.27 N ATOM 427 CA SER 57 32.009 74.516 17.509 1.00 54.27 C ATOM 428 C SER 57 30.682 73.975 17.077 1.00 54.27 C ATOM 429 O SER 57 30.608 72.963 16.384 1.00 54.27 O ATOM 430 CB SER 57 32.536 75.410 16.371 1.00 54.27 C ATOM 431 OG SER 57 31.627 76.474 16.125 1.00 54.27 O ATOM 432 N CYS 58 29.591 74.610 17.553 1.00 99.41 N ATOM 433 CA CYS 58 28.238 74.269 17.208 1.00 99.41 C ATOM 434 C CYS 58 27.799 74.781 15.874 1.00 99.41 C ATOM 435 O CYS 58 26.772 74.326 15.380 1.00 99.41 O ATOM 436 CB CYS 58 27.161 74.635 18.247 1.00 99.41 C ATOM 437 SG CYS 58 26.962 73.309 19.478 1.00 99.41 S ATOM 438 N LYS 59 28.507 75.765 15.278 1.00160.16 N ATOM 439 CA LYS 59 28.022 76.385 14.069 1.00160.16 C ATOM 440 C LYS 59 27.675 75.360 13.029 1.00160.16 C ATOM 441 O LYS 59 28.505 74.555 12.609 1.00160.16 O ATOM 442 CB LYS 59 29.014 77.382 13.435 1.00160.16 C ATOM 443 CG LYS 59 30.167 76.734 12.661 1.00160.16 C ATOM 444 CD LYS 59 31.030 75.785 13.493 1.00160.16 C ATOM 445 CE LYS 59 32.165 75.135 12.697 1.00160.16 C ATOM 446 NZ LYS 59 33.185 76.149 12.346 1.00160.16 N ATOM 447 N GLY 60 26.386 75.365 12.621 1.00 43.52 N ATOM 448 CA GLY 60 25.875 74.526 11.574 1.00 43.52 C ATOM 449 C GLY 60 25.525 73.171 12.112 1.00 43.52 C ATOM 450 O GLY 60 25.017 72.338 11.369 1.00 43.52 O ATOM 451 N ARG 61 25.831 72.914 13.397 1.00176.22 N ATOM 452 CA ARG 61 25.649 71.677 14.118 1.00176.22 C ATOM 453 C ARG 61 24.255 71.397 14.613 1.00176.22 C ATOM 454 O ARG 61 23.997 70.255 14.982 1.00176.22 O ATOM 455 CB ARG 61 26.639 71.476 15.276 1.00176.22 C ATOM 456 CG ARG 61 28.046 71.131 14.781 1.00176.22 C ATOM 457 CD ARG 61 29.021 70.774 15.903 1.00176.22 C ATOM 458 NE ARG 61 28.616 69.447 16.444 1.00176.22 N ATOM 459 CZ ARG 61 29.006 69.077 17.699 1.00176.22 C ATOM 460 NH1 ARG 61 29.767 69.924 18.452 1.00176.22 N ATOM 461 NH2 ARG 61 28.629 67.865 18.202 1.00176.22 N ATOM 462 N CYS 62 23.353 72.404 14.664 1.00197.14 N ATOM 463 CA CYS 62 21.989 72.366 15.158 1.00197.14 C ATOM 464 C CYS 62 21.416 71.192 14.421 1.00197.14 C ATOM 465 O CYS 62 20.515 70.529 14.883 1.00197.14 O ATOM 466 CB CYS 62 21.053 73.592 14.713 1.00197.14 C ATOM 467 SG CYS 62 19.502 74.029 15.623 1.00197.14 S ATOM 468 N PHE 63 21.855 70.864 13.215 1.00160.50 N ATOM 469 CA PHE 63 21.162 69.774 12.571 1.00160.50 C ATOM 470 C PHE 63 21.468 68.404 13.118 1.00160.50 C ATOM 471 O PHE 63 20.588 67.547 13.187 1.00160.50 O ATOM 472 CB PHE 63 21.443 69.658 11.057 1.00160.50 C ATOM 473 CG PHE 63 22.820 69.116 10.821 1.00160.50 C ATOM 474 CD1 PHE 63 23.063 67.759 10.741 1.00160.50 C ATOM 475 CD2 PHE 63 23.884 69.961 10.660 1.00160.50 C ATOM 476 CE1 PHE 63 24.328 67.267 10.522 1.00160.50 C ATOM 477 CE2 PHE 63 25.156 69.484 10.441 1.00160.50 C ATOM 478 CZ PHE 63 25.384 68.132 10.372 1.00160.50 C ATOM 479 N GLU 64 22.734 68.181 13.510 1.00158.04 N ATOM 480 CA GLU 64 23.347 66.890 13.674 1.00158.04 C ATOM 481 C GLU 64 22.644 65.915 14.571 1.00158.04 C ATOM 482 O GLU 64 22.243 64.864 14.080 1.00158.04 O ATOM 483 CB GLU 64 24.776 67.086 14.207 1.00158.04 C ATOM 484 CG GLU 64 25.605 65.823 14.405 1.00158.04 C ATOM 485 CD GLU 64 26.957 66.286 14.932 1.00158.04 C ATOM 486 OE1 GLU 64 27.782 66.762 14.107 1.00158.04 O ATOM 487 OE2 GLU 64 27.176 66.189 16.168 1.00158.04 O ATOM 488 N LEU 65 22.472 66.226 15.873 1.00155.90 N ATOM 489 CA LEU 65 21.871 65.383 16.888 1.00155.90 C ATOM 490 C LEU 65 23.011 65.236 17.844 1.00155.90 C ATOM 491 O LEU 65 23.994 65.970 17.752 1.00155.90 O ATOM 492 CB LEU 65 21.497 63.927 16.503 1.00155.90 C ATOM 493 CG LEU 65 20.338 63.248 17.286 1.00155.90 C ATOM 494 CD1 LEU 65 20.362 61.728 17.077 1.00155.90 C ATOM 495 CD2 LEU 65 20.181 63.684 18.752 1.00155.90 C ATOM 496 N GLN 66 22.912 64.291 18.792 1.00 55.59 N ATOM 497 CA GLN 66 23.981 64.064 19.711 1.00 55.59 C ATOM 498 C GLN 66 24.970 63.178 19.039 1.00 55.59 C ATOM 499 O GLN 66 24.601 62.232 18.343 1.00 55.59 O ATOM 500 CB GLN 66 23.544 63.342 20.998 1.00 55.59 C ATOM 501 CG GLN 66 24.687 63.095 21.984 1.00 55.59 C ATOM 502 CD GLN 66 24.140 62.287 23.152 1.00 55.59 C ATOM 503 NE2 GLN 66 23.579 62.991 24.171 1.00 55.59 N ATOM 504 OE1 GLN 66 24.204 61.059 23.155 1.00 55.59 O ATOM 505 N GLU 67 26.270 63.488 19.196 1.00 98.80 N ATOM 506 CA GLU 67 27.221 62.559 18.679 1.00 98.80 C ATOM 507 C GLU 67 28.081 62.168 19.837 1.00 98.80 C ATOM 508 O GLU 67 28.898 62.948 20.326 1.00 98.80 O ATOM 509 CB GLU 67 28.099 63.088 17.532 1.00 98.80 C ATOM 510 CG GLU 67 28.826 61.956 16.796 1.00 98.80 C ATOM 511 CD GLU 67 29.351 62.484 15.468 1.00 98.80 C ATOM 512 OE1 GLU 67 29.177 63.704 15.204 1.00 98.80 O ATOM 513 OE2 GLU 67 29.940 61.673 14.705 1.00 98.80 O ATOM 514 N VAL 68 27.883 60.922 20.306 1.00120.72 N ATOM 515 CA VAL 68 28.560 60.362 21.439 1.00120.72 C ATOM 516 C VAL 68 29.998 60.190 21.109 1.00120.72 C ATOM 517 O VAL 68 30.871 60.329 21.963 1.00120.72 O ATOM 518 CB VAL 68 28.035 59.010 21.820 1.00120.72 C ATOM 519 CG1 VAL 68 26.557 59.153 22.216 1.00120.72 C ATOM 520 CG2 VAL 68 28.283 58.041 20.651 1.00120.72 C ATOM 521 N GLY 69 30.279 59.912 19.828 1.00113.26 N ATOM 522 CA GLY 69 31.601 59.554 19.438 1.00113.26 C ATOM 523 C GLY 69 32.443 60.776 19.302 1.00113.26 C ATOM 524 O GLY 69 32.833 61.416 20.276 1.00113.26 O ATOM 525 N PRO 70 32.735 61.073 18.078 1.00122.99 N ATOM 526 CA PRO 70 33.683 62.094 17.746 1.00122.99 C ATOM 527 C PRO 70 33.457 63.467 18.284 1.00122.99 C ATOM 528 O PRO 70 34.464 64.129 18.530 1.00122.99 O ATOM 529 CB PRO 70 33.805 62.035 16.226 1.00122.99 C ATOM 530 CG PRO 70 33.508 60.563 15.891 1.00122.99 C ATOM 531 CD PRO 70 32.559 60.105 17.009 1.00122.99 C ATOM 532 N PRO 71 32.272 63.961 18.472 1.00159.15 N ATOM 533 CA PRO 71 32.220 65.312 18.945 1.00159.15 C ATOM 534 C PRO 71 32.658 65.492 20.362 1.00159.15 C ATOM 535 O PRO 71 32.241 64.729 21.232 1.00159.15 O ATOM 536 CB PRO 71 30.814 65.817 18.636 1.00159.15 C ATOM 537 CG PRO 71 30.431 65.014 17.380 1.00159.15 C ATOM 538 CD PRO 71 31.208 63.692 17.523 1.00159.15 C ATOM 539 N ASP 72 33.504 66.511 20.596 1.00 36.65 N ATOM 540 CA ASP 72 34.001 66.852 21.894 1.00 36.65 C ATOM 541 C ASP 72 32.867 67.404 22.706 1.00 36.65 C ATOM 542 O ASP 72 32.721 67.071 23.880 1.00 36.65 O ATOM 543 CB ASP 72 35.100 67.927 21.829 1.00 36.65 C ATOM 544 CG ASP 72 36.323 67.301 21.172 1.00 36.65 C ATOM 545 OD1 ASP 72 36.488 66.058 21.297 1.00 36.65 O ATOM 546 OD2 ASP 72 37.106 68.054 20.532 1.00 36.65 O ATOM 547 N CYS 73 32.028 68.262 22.086 1.00 69.68 N ATOM 548 CA CYS 73 30.933 68.883 22.783 1.00 69.68 C ATOM 549 C CYS 73 29.691 68.600 21.992 1.00 69.68 C ATOM 550 O CYS 73 29.774 68.207 20.829 1.00 69.68 O ATOM 551 CB CYS 73 30.995 70.411 22.809 1.00 69.68 C ATOM 552 SG CYS 73 30.491 71.052 21.190 1.00 69.68 S ATOM 553 N ARG 74 28.503 68.834 22.592 1.00126.27 N ATOM 554 CA ARG 74 27.272 68.502 21.927 1.00126.27 C ATOM 555 C ARG 74 26.438 69.725 21.655 1.00126.27 C ATOM 556 O ARG 74 26.515 70.741 22.344 1.00126.27 O ATOM 557 CB ARG 74 26.440 67.488 22.727 1.00126.27 C ATOM 558 CG ARG 74 27.033 66.079 22.643 1.00126.27 C ATOM 559 CD ARG 74 26.572 65.121 23.741 1.00126.27 C ATOM 560 NE ARG 74 27.339 65.464 24.971 1.00126.27 N ATOM 561 CZ ARG 74 28.614 64.996 25.123 1.00126.27 C ATOM 562 NH1 ARG 74 29.186 64.250 24.132 1.00126.27 N ATOM 563 NH2 ARG 74 29.317 65.274 26.258 1.00126.27 N ATOM 564 N CYS 75 25.778 69.707 20.481 1.00145.82 N ATOM 565 CA CYS 75 24.848 70.695 19.994 1.00145.82 C ATOM 566 C CYS 75 23.388 70.409 20.242 1.00145.82 C ATOM 567 O CYS 75 22.549 71.257 19.930 1.00145.82 O ATOM 568 CB CYS 75 25.102 71.045 18.524 1.00145.82 C ATOM 569 SG CYS 75 26.818 71.631 18.327 1.00145.82 S ATOM 570 N ASP 76 23.027 69.182 20.692 1.00 91.17 N ATOM 571 CA ASP 76 21.650 68.738 20.773 1.00 91.17 C ATOM 572 C ASP 76 20.835 69.553 21.723 1.00 91.17 C ATOM 573 O ASP 76 21.345 70.324 22.530 1.00 91.17 O ATOM 574 CB ASP 76 21.493 67.255 21.160 1.00 91.17 C ATOM 575 CG ASP 76 22.016 67.042 22.574 1.00 91.17 C ATOM 576 OD1 ASP 76 23.172 67.454 22.862 1.00 91.17 O ATOM 577 OD2 ASP 76 21.253 66.462 23.392 1.00 91.17 O ATOM 578 N ASN 77 19.500 69.384 21.620 1.00 63.45 N ATOM 579 CA ASN 77 18.524 70.118 22.375 1.00 63.45 C ATOM 580 C ASN 77 18.705 69.878 23.844 1.00 63.45 C ATOM 581 O ASN 77 18.510 70.783 24.652 1.00 63.45 O ATOM 582 CB ASN 77 17.087 69.700 22.037 1.00 63.45 C ATOM 583 CG ASN 77 16.785 70.177 20.627 1.00 63.45 C ATOM 584 ND2 ASN 77 16.844 69.246 19.636 1.00 63.45 N ATOM 585 OD1 ASN 77 16.513 71.356 20.415 1.00 63.45 O ATOM 586 N LEU 78 19.023 68.623 24.205 1.00 90.03 N ATOM 587 CA LEU 78 19.196 68.114 25.542 1.00 90.03 C ATOM 588 C LEU 78 20.477 68.538 26.207 1.00 90.03 C ATOM 589 O LEU 78 20.587 68.467 27.429 1.00 90.03 O ATOM 590 CB LEU 78 19.124 66.581 25.611 1.00 90.03 C ATOM 591 CG LEU 78 17.734 66.036 25.239 1.00 90.03 C ATOM 592 CD1 LEU 78 17.667 64.511 25.418 1.00 90.03 C ATOM 593 CD2 LEU 78 16.624 66.781 25.999 1.00 90.03 C ATOM 594 N CYS 79 21.480 69.007 25.442 1.00 89.57 N ATOM 595 CA CYS 79 22.830 69.132 25.934 1.00 89.57 C ATOM 596 C CYS 79 22.956 69.893 27.225 1.00 89.57 C ATOM 597 O CYS 79 23.843 69.576 28.017 1.00 89.57 O ATOM 598 CB CYS 79 23.816 69.756 24.919 1.00 89.57 C ATOM 599 SG CYS 79 23.529 71.516 24.574 1.00 89.57 S ATOM 600 N LYS 80 22.113 70.907 27.495 1.00115.35 N ATOM 601 CA LYS 80 22.281 71.680 28.699 1.00115.35 C ATOM 602 C LYS 80 22.147 70.810 29.916 1.00115.35 C ATOM 603 O LYS 80 22.877 70.988 30.891 1.00115.35 O ATOM 604 CB LYS 80 21.262 72.823 28.844 1.00115.35 C ATOM 605 CG LYS 80 21.578 73.750 30.023 1.00115.35 C ATOM 606 CD LYS 80 20.796 75.065 30.015 1.00115.35 C ATOM 607 CE LYS 80 19.594 75.067 30.962 1.00115.35 C ATOM 608 NZ LYS 80 20.057 75.181 32.362 1.00115.35 N ATOM 609 N SER 81 21.215 69.839 29.906 1.00 38.74 N ATOM 610 CA SER 81 21.033 69.017 31.068 1.00 38.74 C ATOM 611 C SER 81 22.325 68.314 31.347 1.00 38.74 C ATOM 612 O SER 81 22.712 68.128 32.498 1.00 38.74 O ATOM 613 CB SER 81 19.953 67.941 30.871 1.00 38.74 C ATOM 614 OG SER 81 18.685 68.551 30.681 1.00 38.74 O ATOM 615 N TYR 82 23.000 67.882 30.272 1.00 91.56 N ATOM 616 CA TYR 82 24.261 67.199 30.281 1.00 91.56 C ATOM 617 C TYR 82 25.406 68.114 30.615 1.00 91.56 C ATOM 618 O TYR 82 26.452 67.656 31.068 1.00 91.56 O ATOM 619 CB TYR 82 24.529 66.437 28.978 1.00 91.56 C ATOM 620 CG TYR 82 23.527 65.340 29.030 1.00 91.56 C ATOM 621 CD1 TYR 82 22.248 65.527 28.559 1.00 91.56 C ATOM 622 CD2 TYR 82 23.864 64.127 29.582 1.00 91.56 C ATOM 623 CE1 TYR 82 21.325 64.510 28.621 1.00 91.56 C ATOM 624 CE2 TYR 82 22.946 63.106 29.648 1.00 91.56 C ATOM 625 CZ TYR 82 21.675 63.297 29.165 1.00 91.56 C ATOM 626 OH TYR 82 20.731 62.250 29.231 1.00 91.56 O ATOM 627 N SER 83 25.277 69.425 30.344 1.00 67.73 N ATOM 628 CA SER 83 26.349 70.356 30.591 1.00 67.73 C ATOM 629 C SER 83 27.460 70.090 29.612 1.00 67.73 C ATOM 630 O SER 83 28.609 70.453 29.856 1.00 67.73 O ATOM 631 CB SER 83 26.926 70.256 32.013 1.00 67.73 C ATOM 632 OG SER 83 25.940 70.624 32.967 1.00 67.73 O ATOM 633 N SER 84 27.120 69.397 28.501 1.00129.19 N ATOM 634 CA SER 84 27.967 69.040 27.386 1.00129.19 C ATOM 635 C SER 84 28.007 70.089 26.301 1.00129.19 C ATOM 636 O SER 84 28.755 69.942 25.335 1.00129.19 O ATOM 637 CB SER 84 27.483 67.765 26.678 1.00129.19 C ATOM 638 OG SER 84 27.430 66.681 27.588 1.00129.19 O ATOM 639 N CYS 85 27.197 71.156 26.391 1.00 85.20 N ATOM 640 CA CYS 85 27.047 72.064 25.281 1.00 85.20 C ATOM 641 C CYS 85 28.321 72.815 24.999 1.00 85.20 C ATOM 642 O CYS 85 29.048 73.201 25.914 1.00 85.20 O ATOM 643 CB CYS 85 25.962 73.128 25.536 1.00 85.20 C ATOM 644 SG CYS 85 24.379 72.467 26.155 1.00 85.20 S ATOM 645 N CYS 86 28.623 73.032 23.694 1.00 90.60 N ATOM 646 CA CYS 86 29.715 73.890 23.327 1.00 90.60 C ATOM 647 C CYS 86 29.325 75.265 23.773 1.00 90.60 C ATOM 648 O CYS 86 28.143 75.575 23.908 1.00 90.60 O ATOM 649 CB CYS 86 29.982 74.002 21.814 1.00 90.60 C ATOM 650 SG CYS 86 31.268 72.909 21.147 1.00 90.60 S ATOM 651 N HIS 87 30.324 76.137 24.004 1.00118.21 N ATOM 652 CA HIS 87 30.084 77.457 24.516 1.00118.21 C ATOM 653 C HIS 87 29.245 78.238 23.549 1.00118.21 C ATOM 654 O HIS 87 28.390 79.023 23.958 1.00118.21 O ATOM 655 CB HIS 87 31.382 78.248 24.747 1.00118.21 C ATOM 656 CG HIS 87 31.145 79.609 25.331 1.00118.21 C ATOM 657 CD2 HIS 87 31.058 80.822 24.720 1.00118.21 C ATOM 658 ND1 HIS 87 30.967 79.850 26.675 1.00118.21 N ATOM 659 CE1 HIS 87 30.783 81.188 26.810 1.00118.21 C ATOM 660 NE2 HIS 87 30.832 81.819 25.650 1.00118.21 N ATOM 661 N ASP 88 29.499 78.053 22.240 1.00 85.95 N ATOM 662 CA ASP 88 28.849 78.736 21.150 1.00 85.95 C ATOM 663 C ASP 88 27.432 78.274 20.947 1.00 85.95 C ATOM 664 O ASP 88 26.672 78.896 20.209 1.00 85.95 O ATOM 665 CB ASP 88 29.620 78.641 19.816 1.00 85.95 C ATOM 666 CG ASP 88 29.745 77.197 19.352 1.00 85.95 C ATOM 667 OD1 ASP 88 29.040 76.313 19.904 1.00 85.95 O ATOM 668 OD2 ASP 88 30.562 76.961 18.425 1.00 85.95 O ATOM 669 N PHE 89 27.040 77.156 21.578 1.00 99.01 N ATOM 670 CA PHE 89 25.752 76.548 21.373 1.00 99.01 C ATOM 671 C PHE 89 24.614 77.518 21.570 1.00 99.01 C ATOM 672 O PHE 89 23.720 77.588 20.727 1.00 99.01 O ATOM 673 CB PHE 89 25.579 75.380 22.357 1.00 99.01 C ATOM 674 CG PHE 89 24.168 74.927 22.368 1.00 99.01 C ATOM 675 CD1 PHE 89 23.691 74.061 21.414 1.00 99.01 C ATOM 676 CD2 PHE 89 23.334 75.379 23.363 1.00 99.01 C ATOM 677 CE1 PHE 89 22.382 73.651 21.456 1.00 99.01 C ATOM 678 CE2 PHE 89 22.026 74.976 23.412 1.00 99.01 C ATOM 679 CZ PHE 89 21.559 74.112 22.455 1.00 99.01 C ATOM 680 N ASP 90 24.608 78.304 22.661 1.00 51.66 N ATOM 681 CA ASP 90 23.462 79.128 22.944 1.00 51.66 C ATOM 682 C ASP 90 23.207 80.099 21.839 1.00 51.66 C ATOM 683 O ASP 90 22.096 80.170 21.313 1.00 51.66 O ATOM 684 CB ASP 90 23.633 79.948 24.235 1.00 51.66 C ATOM 685 CG ASP 90 23.667 78.979 25.408 1.00 51.66 C ATOM 686 OD1 ASP 90 23.406 77.767 25.182 1.00 51.66 O ATOM 687 OD2 ASP 90 23.951 79.437 26.548 1.00 51.66 O ATOM 688 N GLU 91 24.227 80.876 21.446 1.00100.66 N ATOM 689 CA GLU 91 23.987 81.858 20.433 1.00100.66 C ATOM 690 C GLU 91 23.758 81.166 19.131 1.00100.66 C ATOM 691 O GLU 91 22.879 81.545 18.357 1.00100.66 O ATOM 692 CB GLU 91 25.158 82.842 20.259 1.00100.66 C ATOM 693 CG GLU 91 24.764 84.142 19.552 1.00100.66 C ATOM 694 CD GLU 91 24.566 83.864 18.069 1.00100.66 C ATOM 695 OE1 GLU 91 25.189 82.898 17.555 1.00100.66 O ATOM 696 OE2 GLU 91 23.793 84.627 17.427 1.00100.66 O ATOM 697 N LEU 92 24.543 80.107 18.868 1.00 70.16 N ATOM 698 CA LEU 92 24.505 79.467 17.593 1.00 70.16 C ATOM 699 C LEU 92 23.171 78.840 17.337 1.00 70.16 C ATOM 700 O LEU 92 22.703 78.930 16.208 1.00 70.16 O ATOM 701 CB LEU 92 25.637 78.449 17.403 1.00 70.16 C ATOM 702 CG LEU 92 27.045 79.072 17.420 1.00 70.16 C ATOM 703 CD1 LEU 92 28.115 78.034 17.044 1.00 70.16 C ATOM 704 CD2 LEU 92 27.113 80.340 16.553 1.00 70.16 C ATOM 705 N CYS 93 22.544 78.135 18.315 1.00188.65 N ATOM 706 CA CYS 93 21.207 77.668 18.053 1.00188.65 C ATOM 707 C CYS 93 20.390 77.672 19.304 1.00188.65 C ATOM 708 O CYS 93 20.800 78.226 20.320 1.00188.65 O ATOM 709 CB CYS 93 21.028 76.442 17.108 1.00188.65 C ATOM 710 SG CYS 93 19.379 75.895 16.556 1.00188.65 S ATOM 711 N LEU 94 19.190 77.072 19.254 1.00287.73 N ATOM 712 CA LEU 94 18.256 77.262 20.323 1.00287.73 C ATOM 713 C LEU 94 18.822 76.757 21.605 1.00287.73 C ATOM 714 O LEU 94 19.512 75.744 21.654 1.00287.73 O ATOM 715 CB LEU 94 16.901 76.565 20.073 1.00287.73 C ATOM 716 CG LEU 94 15.782 76.898 21.088 1.00287.73 C ATOM 717 CD1 LEU 94 16.046 76.324 22.488 1.00287.73 C ATOM 718 CD2 LEU 94 15.502 78.408 21.114 1.00287.73 C ATOM 719 N LYS 95 18.594 77.526 22.683 1.00285.88 N ATOM 720 CA LYS 95 18.939 77.084 23.997 1.00285.88 C ATOM 721 C LYS 95 18.503 77.785 25.234 1.00285.88 C ATOM 722 O LYS 95 19.023 78.853 25.556 1.00285.88 O ATOM 723 CB LYS 95 20.475 77.138 23.965 1.00285.88 C ATOM 724 CG LYS 95 21.128 76.030 24.791 1.00285.88 C ATOM 725 CD LYS 95 20.683 76.002 26.253 1.00285.88 C ATOM 726 CE LYS 95 21.306 77.099 27.114 1.00285.88 C ATOM 727 NZ LYS 95 20.810 76.979 28.504 1.00285.88 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 62.01 61.5 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 63.36 62.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 58.43 59.1 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.59 52.8 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 68.16 54.3 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 73.23 48.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 60.48 63.6 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 79.98 43.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 65.44 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 89.68 33.3 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 21.82 80.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.62 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 87.76 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 79.20 42.9 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 97.50 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.30 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 77.30 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 69.38 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 103.06 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.51 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.51 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0627 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.78 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.57 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.63 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.91 142 100.0 142 CRMSMC BURIED . . . . . . . . 1.71 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.13 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.93 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.78 103 100.0 103 CRMSSC BURIED . . . . . . . . 2.85 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.92 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.39 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.25 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 112.723 0.966 0.967 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 111.274 0.961 0.962 29 100.0 29 ERRCA BURIED . . . . . . . . 116.544 0.979 0.980 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 113.139 0.964 0.965 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 111.856 0.959 0.960 142 100.0 142 ERRMC BURIED . . . . . . . . 116.450 0.978 0.979 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 119.141 0.935 0.939 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 119.819 0.942 0.944 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 120.883 0.922 0.927 103 100.0 103 ERRSC BURIED . . . . . . . . 114.654 0.968 0.969 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 115.782 0.952 0.954 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 115.840 0.943 0.946 219 100.0 219 ERRALL BURIED . . . . . . . . 115.631 0.974 0.974 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 18 29 33 37 40 40 40 DISTCA CA (P) 45.00 72.50 82.50 92.50 100.00 40 DISTCA CA (RMS) 0.75 1.02 1.25 1.85 2.51 DISTCA ALL (N) 94 174 211 255 293 303 303 DISTALL ALL (P) 31.02 57.43 69.64 84.16 96.70 303 DISTALL ALL (RMS) 0.72 1.12 1.43 2.09 3.33 DISTALL END of the results output