####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS060_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS060_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.36 2.36 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 28 67 - 94 1.99 2.57 LCS_AVERAGE: 58.25 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 74 - 93 0.99 2.44 LCS_AVERAGE: 33.62 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 8 11 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 8 11 40 10 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 8 11 40 10 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 8 11 40 5 13 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 8 11 40 3 9 22 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 8 11 40 3 7 23 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 8 11 40 5 16 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 8 11 40 5 13 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 4 11 40 3 8 19 26 31 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 4 11 40 3 4 9 15 26 31 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 4 11 40 3 4 13 22 28 31 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 28 40 3 3 5 6 16 31 34 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 28 40 2 3 4 4 7 7 20 22 37 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 28 40 0 3 4 23 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 28 40 3 9 16 26 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 4 28 40 3 4 5 13 28 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 6 28 40 3 4 18 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 15 28 40 3 7 16 24 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 20 28 40 5 15 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 20 28 40 5 14 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 20 28 40 4 13 21 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 20 28 40 4 7 16 25 31 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 20 28 40 10 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 20 28 40 4 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 20 28 40 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 20 28 40 6 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 20 28 40 6 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 18 28 40 4 5 21 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 27 40 0 4 4 7 10 28 33 36 39 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 63.96 ( 33.62 58.25 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 19 24 29 32 34 35 38 39 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 32.50 47.50 60.00 72.50 80.00 85.00 87.50 95.00 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.34 0.57 0.90 1.14 1.39 1.54 1.61 2.06 2.19 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 GDT RMS_ALL_AT 2.43 2.43 2.45 2.50 2.59 2.52 2.54 2.39 2.37 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 2.36 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: D 88 D 88 # possible swapping detected: D 90 D 90 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 0.748 0 0.149 0.149 1.079 88.214 88.214 LGA S 57 S 57 0.895 0 0.064 0.094 1.303 88.214 85.952 LGA C 58 C 58 0.868 0 0.121 0.129 1.163 85.952 87.460 LGA K 59 K 59 2.049 0 0.643 0.977 8.853 62.024 42.011 LGA G 60 G 60 2.660 0 0.307 0.307 3.829 55.595 55.595 LGA R 61 R 61 2.101 0 0.489 1.636 12.626 68.810 34.416 LGA C 62 C 62 1.460 0 0.552 1.010 3.274 71.429 69.286 LGA F 63 F 63 2.154 0 0.453 0.344 3.608 59.405 60.043 LGA E 64 E 64 2.209 0 0.071 1.151 5.316 61.190 56.508 LGA L 65 L 65 4.283 0 0.652 0.787 6.648 48.810 33.036 LGA Q 66 Q 66 4.311 0 0.201 1.326 6.192 31.548 31.217 LGA E 67 E 67 4.529 0 0.590 1.445 7.472 32.857 28.730 LGA V 68 V 68 6.133 0 0.608 1.407 9.430 27.976 17.551 LGA G 69 G 69 3.515 0 0.182 0.182 3.891 60.238 60.238 LGA P 70 P 70 3.303 0 0.092 0.156 7.348 42.381 31.769 LGA P 71 P 71 3.480 0 0.066 0.259 3.837 51.786 50.068 LGA D 72 D 72 2.011 3 0.634 0.628 4.405 55.952 37.083 LGA C 73 C 73 3.006 0 0.218 0.638 4.383 59.167 51.825 LGA R 74 R 74 1.505 0 0.135 1.459 9.570 79.405 45.931 LGA C 75 C 75 1.106 0 0.051 0.178 2.127 77.381 78.810 LGA D 76 D 76 1.650 0 0.039 1.027 5.880 77.143 62.024 LGA N 77 N 77 2.484 0 0.097 1.286 4.399 66.786 59.524 LGA L 78 L 78 0.447 0 0.223 0.546 3.220 92.857 78.095 LGA C 79 C 79 0.592 0 0.043 0.739 3.476 92.857 85.317 LGA K 80 K 80 0.714 0 0.039 0.795 1.731 90.476 87.566 LGA S 81 S 81 0.478 0 0.050 0.701 2.040 97.619 92.540 LGA Y 82 Y 82 0.729 0 0.082 0.346 1.118 90.476 89.722 LGA S 83 S 83 0.721 0 0.216 0.206 0.995 90.476 90.476 LGA S 84 S 84 0.638 0 0.212 0.590 2.539 88.214 83.413 LGA C 85 C 85 0.443 0 0.055 0.768 2.311 97.619 90.952 LGA C 86 C 86 0.571 0 0.104 0.127 1.042 90.595 90.556 LGA H 87 H 87 1.319 0 0.100 1.063 8.162 81.548 50.857 LGA D 88 D 88 0.581 0 0.151 0.937 2.949 92.857 80.000 LGA F 89 F 89 0.924 0 0.046 0.356 1.650 85.952 83.983 LGA D 90 D 90 1.059 0 0.049 0.643 1.817 81.548 81.607 LGA E 91 E 91 1.080 0 0.095 0.877 3.631 83.690 69.312 LGA L 92 L 92 1.187 0 0.063 1.444 5.117 81.429 65.000 LGA C 93 C 93 0.824 0 0.081 0.836 4.593 90.476 79.127 LGA L 94 L 94 1.703 0 0.424 0.361 4.759 67.857 57.500 LGA K 95 K 95 5.429 0 0.642 0.990 11.457 22.500 18.836 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.364 2.399 3.554 71.783 63.554 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 38 2.06 78.750 77.172 1.760 LGA_LOCAL RMSD: 2.060 Number of atoms: 38 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.389 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.364 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.240804 * X + -0.945533 * Y + 0.219044 * Z + 44.577438 Y_new = 0.691951 * X + 0.008989 * Y + -0.721889 * Z + 79.084801 Z_new = 0.680601 * X + 0.325402 * Y + 0.656427 * Z + -166.176163 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.235897 -0.748583 0.460215 [DEG: 70.8117 -42.8906 26.3684 ] ZXZ: 0.294602 0.854724 1.124814 [DEG: 16.8795 48.9721 64.4471 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS060_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS060_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 38 2.06 77.172 2.36 REMARK ---------------------------------------------------------- MOLECULE T0543TS060_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT N/A ATOM 422 N GLY 56 35.664 72.286 18.899 1.00 0.00 N ATOM 423 CA GLY 56 34.510 72.200 19.754 1.00 0.00 C ATOM 424 C GLY 56 33.648 73.403 19.498 1.00 0.00 C ATOM 425 O GLY 56 33.187 74.041 20.446 1.00 0.00 O ATOM 426 N SER 57 33.426 73.769 18.215 1.00 0.00 N ATOM 427 CA SER 57 32.594 74.910 17.927 1.00 0.00 C ATOM 428 CB SER 57 33.319 76.002 17.118 1.00 0.00 C ATOM 429 OG SER 57 32.443 77.089 16.867 1.00 0.00 O ATOM 430 C SER 57 31.413 74.456 17.101 1.00 0.00 C ATOM 431 O SER 57 31.569 73.893 16.020 1.00 0.00 O ATOM 432 N CYS 58 30.198 74.729 17.620 1.00 0.00 N ATOM 433 CA CYS 58 28.903 74.399 17.067 1.00 0.00 C ATOM 434 CB CYS 58 27.735 74.642 18.051 1.00 0.00 C ATOM 435 SG CYS 58 27.563 73.409 19.380 1.00 0.00 S ATOM 436 C CYS 58 28.563 75.255 15.877 1.00 0.00 C ATOM 437 O CYS 58 27.677 74.914 15.099 1.00 0.00 O ATOM 438 N LYS 59 29.274 76.378 15.691 1.00 0.00 N ATOM 439 CA LYS 59 28.855 77.441 14.815 1.00 0.00 C ATOM 440 CB LYS 59 29.933 78.531 14.696 1.00 0.00 C ATOM 441 CG LYS 59 30.153 79.230 16.045 1.00 0.00 C ATOM 442 CD LYS 59 31.447 80.045 16.158 1.00 0.00 C ATOM 443 CE LYS 59 31.790 80.484 17.589 1.00 0.00 C ATOM 444 NZ LYS 59 30.883 81.565 18.034 1.00 0.00 N ATOM 445 C LYS 59 28.446 76.958 13.453 1.00 0.00 C ATOM 446 O LYS 59 27.607 77.593 12.811 1.00 0.00 O ATOM 447 N GLY 60 29.045 75.893 12.907 1.00 0.00 N ATOM 448 CA GLY 60 28.543 75.450 11.629 1.00 0.00 C ATOM 449 C GLY 60 27.191 74.788 11.742 1.00 0.00 C ATOM 450 O GLY 60 26.269 75.157 11.015 1.00 0.00 O ATOM 451 N ARG 61 27.035 73.802 12.662 1.00 0.00 N ATOM 452 CA ARG 61 25.805 73.047 12.716 1.00 0.00 C ATOM 453 CB ARG 61 25.889 71.726 11.925 1.00 0.00 C ATOM 454 CG ARG 61 26.202 71.893 10.434 1.00 0.00 C ATOM 455 CD ARG 61 25.184 72.715 9.652 1.00 0.00 C ATOM 456 NE ARG 61 25.602 72.677 8.221 1.00 0.00 N ATOM 457 CZ ARG 61 25.738 73.839 7.527 1.00 0.00 C ATOM 458 NH1 ARG 61 25.603 75.034 8.173 1.00 0.00 H ATOM 459 NH2 ARG 61 25.993 73.808 6.181 1.00 0.00 H ATOM 460 C ARG 61 25.520 72.659 14.139 1.00 0.00 C ATOM 461 O ARG 61 26.112 71.729 14.683 1.00 0.00 O ATOM 462 N CYS 62 24.521 73.334 14.729 1.00 0.00 N ATOM 463 CA CYS 62 24.054 73.276 16.087 1.00 0.00 C ATOM 464 CB CYS 62 23.260 74.530 16.496 1.00 0.00 C ATOM 465 SG CYS 62 23.114 74.706 18.303 1.00 0.00 S ATOM 466 C CYS 62 23.219 72.055 16.389 1.00 0.00 C ATOM 467 O CYS 62 22.577 72.020 17.439 1.00 0.00 O ATOM 468 N PHE 63 23.017 71.106 15.456 1.00 0.00 N ATOM 469 CA PHE 63 22.228 69.974 15.882 1.00 0.00 C ATOM 470 CB PHE 63 20.861 69.854 15.189 1.00 0.00 C ATOM 471 CG PHE 63 19.907 70.772 15.857 1.00 0.00 C ATOM 472 CD1 PHE 63 19.764 72.082 15.474 1.00 0.00 C ATOM 473 CD2 PHE 63 19.150 70.277 16.892 1.00 0.00 C ATOM 474 CE1 PHE 63 18.866 72.891 16.131 1.00 0.00 C ATOM 475 CE2 PHE 63 18.254 71.078 17.550 1.00 0.00 C ATOM 476 CZ PHE 63 18.111 72.389 17.166 1.00 0.00 C ATOM 477 C PHE 63 22.902 68.658 15.642 1.00 0.00 C ATOM 478 O PHE 63 23.186 68.280 14.509 1.00 0.00 O ATOM 479 N GLU 64 23.142 67.907 16.734 1.00 0.00 N ATOM 480 CA GLU 64 23.647 66.568 16.649 1.00 0.00 C ATOM 481 CB GLU 64 25.151 66.492 16.327 1.00 0.00 C ATOM 482 CG GLU 64 25.707 65.068 16.223 1.00 0.00 C ATOM 483 CD GLU 64 25.148 64.400 14.965 1.00 0.00 C ATOM 484 OE1 GLU 64 25.411 64.911 13.845 1.00 0.00 O ATOM 485 OE2 GLU 64 24.444 63.364 15.123 1.00 0.00 O ATOM 486 C GLU 64 23.443 65.988 18.012 1.00 0.00 C ATOM 487 O GLU 64 23.823 66.607 19.009 1.00 0.00 O ATOM 488 N LEU 65 22.795 64.802 18.097 1.00 0.00 N ATOM 489 CA LEU 65 22.666 64.141 19.367 1.00 0.00 C ATOM 490 CB LEU 65 21.341 63.444 19.703 1.00 0.00 C ATOM 491 CG LEU 65 20.147 64.308 20.095 1.00 0.00 C ATOM 492 CD1 LEU 65 19.514 64.991 18.873 1.00 0.00 C ATOM 493 CD2 LEU 65 19.183 63.473 20.953 1.00 0.00 C ATOM 494 C LEU 65 23.502 62.928 19.296 1.00 0.00 C ATOM 495 O LEU 65 23.235 62.045 18.478 1.00 0.00 O ATOM 496 N GLN 66 24.506 62.835 20.178 1.00 0.00 N ATOM 497 CA GLN 66 25.308 61.652 20.187 1.00 0.00 C ATOM 498 CB GLN 66 26.674 61.845 19.516 1.00 0.00 C ATOM 499 CG GLN 66 26.560 62.009 18.006 1.00 0.00 C ATOM 500 CD GLN 66 26.048 60.683 17.469 1.00 0.00 C ATOM 501 OE1 GLN 66 26.202 59.645 18.112 1.00 0.00 O ATOM 502 NE2 GLN 66 25.414 60.713 16.266 1.00 0.00 N ATOM 503 C GLN 66 25.577 61.280 21.604 1.00 0.00 C ATOM 504 O GLN 66 26.499 61.809 22.223 1.00 0.00 O ATOM 505 N GLU 67 24.792 60.339 22.156 1.00 0.00 N ATOM 506 CA GLU 67 25.066 59.910 23.496 1.00 0.00 C ATOM 507 CB GLU 67 24.025 58.948 24.086 1.00 0.00 C ATOM 508 CG GLU 67 22.839 59.699 24.687 1.00 0.00 C ATOM 509 CD GLU 67 23.410 60.607 25.772 1.00 0.00 C ATOM 510 OE1 GLU 67 24.178 60.097 26.636 1.00 0.00 O ATOM 511 OE2 GLU 67 23.085 61.822 25.755 1.00 0.00 O ATOM 512 C GLU 67 26.394 59.237 23.487 1.00 0.00 C ATOM 513 O GLU 67 27.162 59.336 24.445 1.00 0.00 O ATOM 514 N VAL 68 26.674 58.498 22.401 1.00 0.00 N ATOM 515 CA VAL 68 27.917 57.813 22.207 1.00 0.00 C ATOM 516 CB VAL 68 27.871 56.828 21.081 1.00 0.00 C ATOM 517 CG1 VAL 68 27.444 57.560 19.799 1.00 0.00 C ATOM 518 CG2 VAL 68 29.259 56.175 20.977 1.00 0.00 C ATOM 519 C VAL 68 29.026 58.782 21.916 1.00 0.00 C ATOM 520 O VAL 68 30.163 58.564 22.336 1.00 0.00 O ATOM 521 N GLY 69 28.729 59.882 21.189 1.00 0.00 N ATOM 522 CA GLY 69 29.743 60.798 20.721 1.00 0.00 C ATOM 523 C GLY 69 30.434 61.463 21.869 1.00 0.00 C ATOM 524 O GLY 69 29.924 61.578 22.984 1.00 0.00 O ATOM 525 N PRO 70 31.631 61.893 21.579 1.00 0.00 N ATOM 526 CA PRO 70 32.438 62.624 22.515 1.00 0.00 C ATOM 527 CD PRO 70 32.417 61.312 20.507 1.00 0.00 C ATOM 528 CB PRO 70 33.852 62.630 21.929 1.00 0.00 C ATOM 529 CG PRO 70 33.685 62.176 20.468 1.00 0.00 C ATOM 530 C PRO 70 31.801 63.974 22.696 1.00 0.00 C ATOM 531 O PRO 70 31.077 64.417 21.806 1.00 0.00 O ATOM 532 N PRO 71 32.056 64.588 23.823 1.00 0.00 N ATOM 533 CA PRO 71 31.480 65.837 24.266 1.00 0.00 C ATOM 534 CD PRO 71 32.823 63.929 24.867 1.00 0.00 C ATOM 535 CB PRO 71 31.796 65.924 25.760 1.00 0.00 C ATOM 536 CG PRO 71 33.017 65.008 25.946 1.00 0.00 C ATOM 537 C PRO 71 31.987 67.035 23.541 1.00 0.00 C ATOM 538 O PRO 71 31.718 68.149 23.986 1.00 0.00 O ATOM 539 N ASP 72 32.745 66.847 22.459 1.00 0.00 N ATOM 540 CA ASP 72 33.367 67.934 21.758 1.00 0.00 C ATOM 541 CB ASP 72 34.201 67.440 20.562 1.00 0.00 C ATOM 542 CG ASP 72 33.286 66.623 19.672 1.00 0.00 C ATOM 543 OD1 ASP 72 33.006 65.452 20.056 1.00 0.00 O ATOM 544 OD2 ASP 72 32.867 67.138 18.604 1.00 0.00 O ATOM 545 C ASP 72 32.370 68.940 21.260 1.00 0.00 C ATOM 546 O ASP 72 32.631 70.142 21.346 1.00 0.00 O ATOM 547 N CYS 73 31.213 68.511 20.716 1.00 0.00 N ATOM 548 CA CYS 73 30.344 69.528 20.195 1.00 0.00 C ATOM 549 CB CYS 73 30.877 70.125 18.879 1.00 0.00 C ATOM 550 SG CYS 73 29.806 71.431 18.217 1.00 0.00 S ATOM 551 C CYS 73 29.004 68.946 19.894 1.00 0.00 C ATOM 552 O CYS 73 28.666 68.696 18.733 1.00 0.00 O ATOM 553 N ARG 74 28.201 68.733 20.955 1.00 0.00 N ATOM 554 CA ARG 74 26.854 68.306 20.770 1.00 0.00 C ATOM 555 CB ARG 74 26.523 67.021 21.540 1.00 0.00 C ATOM 556 CG ARG 74 27.332 65.845 20.999 1.00 0.00 C ATOM 557 CD ARG 74 27.343 65.757 19.471 1.00 0.00 C ATOM 558 NE ARG 74 28.334 64.711 19.102 1.00 0.00 N ATOM 559 CZ ARG 74 29.612 65.045 18.770 1.00 0.00 C ATOM 560 NH1 ARG 74 29.951 66.357 18.581 1.00 0.00 H ATOM 561 NH2 ARG 74 30.552 64.066 18.639 1.00 0.00 H ATOM 562 C ARG 74 26.050 69.459 21.272 1.00 0.00 C ATOM 563 O ARG 74 26.171 69.887 22.417 1.00 0.00 O ATOM 564 N CYS 75 25.368 70.094 20.312 1.00 0.00 N ATOM 565 CA CYS 75 24.552 71.272 20.351 1.00 0.00 C ATOM 566 CB CYS 75 24.764 72.078 19.065 1.00 0.00 C ATOM 567 SG CYS 75 26.492 71.915 18.502 1.00 0.00 S ATOM 568 C CYS 75 23.085 71.013 20.597 1.00 0.00 C ATOM 569 O CYS 75 22.266 71.906 20.371 1.00 0.00 O ATOM 570 N ASP 76 22.693 69.752 20.867 1.00 0.00 N ATOM 571 CA ASP 76 21.314 69.379 21.048 1.00 0.00 C ATOM 572 CB ASP 76 21.148 67.855 20.924 1.00 0.00 C ATOM 573 CG ASP 76 19.671 67.497 20.834 1.00 0.00 C ATOM 574 OD1 ASP 76 19.032 67.891 19.820 1.00 0.00 O ATOM 575 OD2 ASP 76 19.159 66.834 21.770 1.00 0.00 O ATOM 576 C ASP 76 20.816 69.770 22.413 1.00 0.00 C ATOM 577 O ASP 76 21.585 70.095 23.320 1.00 0.00 O ATOM 578 N ASN 77 19.476 69.716 22.578 1.00 0.00 N ATOM 579 CA ASN 77 18.777 70.039 23.790 1.00 0.00 C ATOM 580 CB ASN 77 17.245 69.911 23.630 1.00 0.00 C ATOM 581 CG ASN 77 16.883 68.487 23.222 1.00 0.00 C ATOM 582 OD1 ASN 77 16.598 67.654 24.079 1.00 0.00 O ATOM 583 ND2 ASN 77 16.871 68.204 21.887 1.00 0.00 N ATOM 584 C ASN 77 19.248 69.102 24.856 1.00 0.00 C ATOM 585 O ASN 77 19.386 69.493 26.015 1.00 0.00 O ATOM 586 N LEU 78 19.531 67.842 24.485 1.00 0.00 N ATOM 587 CA LEU 78 19.962 66.862 25.435 1.00 0.00 C ATOM 588 CB LEU 78 20.053 65.443 24.839 1.00 0.00 C ATOM 589 CG LEU 78 20.487 64.351 25.842 1.00 0.00 C ATOM 590 CD1 LEU 78 19.590 64.319 27.093 1.00 0.00 C ATOM 591 CD2 LEU 78 20.528 62.978 25.155 1.00 0.00 C ATOM 592 C LEU 78 21.281 67.290 25.986 1.00 0.00 C ATOM 593 O LEU 78 21.579 67.075 27.160 1.00 0.00 O ATOM 594 N CYS 79 22.103 67.925 25.143 1.00 0.00 N ATOM 595 CA CYS 79 23.417 68.369 25.505 1.00 0.00 C ATOM 596 CB CYS 79 24.105 68.999 24.297 1.00 0.00 C ATOM 597 SG CYS 79 23.907 67.887 22.874 1.00 0.00 S ATOM 598 C CYS 79 23.286 69.396 26.585 1.00 0.00 C ATOM 599 O CYS 79 24.105 69.456 27.502 1.00 0.00 O ATOM 600 N LYS 80 22.259 70.259 26.489 1.00 0.00 N ATOM 601 CA LYS 80 22.054 71.284 27.474 1.00 0.00 C ATOM 602 CB LYS 80 20.937 72.279 27.095 1.00 0.00 C ATOM 603 CG LYS 80 20.877 73.508 28.016 1.00 0.00 C ATOM 604 CD LYS 80 22.142 74.367 27.957 1.00 0.00 C ATOM 605 CE LYS 80 22.104 75.662 28.777 1.00 0.00 C ATOM 606 NZ LYS 80 21.820 76.818 27.899 1.00 0.00 N ATOM 607 C LYS 80 21.694 70.649 28.785 1.00 0.00 C ATOM 608 O LYS 80 22.115 71.117 29.839 1.00 0.00 O ATOM 609 N SER 81 20.879 69.576 28.756 1.00 0.00 N ATOM 610 CA SER 81 20.476 68.922 29.972 1.00 0.00 C ATOM 611 CB SER 81 19.538 67.735 29.726 1.00 0.00 C ATOM 612 OG SER 81 19.205 67.120 30.958 1.00 0.00 O ATOM 613 C SER 81 21.702 68.386 30.646 1.00 0.00 C ATOM 614 O SER 81 21.891 68.558 31.847 1.00 0.00 O ATOM 615 N TYR 82 22.567 67.726 29.858 1.00 0.00 N ATOM 616 CA TYR 82 23.825 67.165 30.269 1.00 0.00 C ATOM 617 CB TYR 82 24.487 66.294 29.185 1.00 0.00 C ATOM 618 CG TYR 82 23.803 64.969 29.196 1.00 0.00 C ATOM 619 CD1 TYR 82 22.437 64.870 29.027 1.00 0.00 C ATOM 620 CD2 TYR 82 24.535 63.811 29.335 1.00 0.00 C ATOM 621 CE1 TYR 82 21.818 63.640 29.033 1.00 0.00 C ATOM 622 CE2 TYR 82 23.923 62.584 29.338 1.00 0.00 C ATOM 623 CZ TYR 82 22.562 62.493 29.192 1.00 0.00 C ATOM 624 OH TYR 82 21.943 61.227 29.197 1.00 0.00 H ATOM 625 C TYR 82 24.754 68.281 30.643 1.00 0.00 C ATOM 626 O TYR 82 25.740 68.061 31.338 1.00 0.00 O ATOM 627 N SER 83 24.508 69.497 30.121 1.00 0.00 N ATOM 628 CA SER 83 25.370 70.615 30.380 1.00 0.00 C ATOM 629 CB SER 83 25.599 70.921 31.875 1.00 0.00 C ATOM 630 OG SER 83 24.394 71.372 32.480 1.00 0.00 O ATOM 631 C SER 83 26.684 70.317 29.736 1.00 0.00 C ATOM 632 O SER 83 27.724 70.830 30.150 1.00 0.00 O ATOM 633 N SER 84 26.656 69.469 28.688 1.00 0.00 N ATOM 634 CA SER 84 27.840 69.154 27.949 1.00 0.00 C ATOM 635 CB SER 84 28.032 67.634 27.790 1.00 0.00 C ATOM 636 OG SER 84 28.117 67.016 29.066 1.00 0.00 O ATOM 637 C SER 84 27.642 69.722 26.579 1.00 0.00 C ATOM 638 O SER 84 27.844 69.055 25.565 1.00 0.00 O ATOM 639 N CYS 85 27.270 71.009 26.528 1.00 0.00 N ATOM 640 CA CYS 85 27.061 71.660 25.274 1.00 0.00 C ATOM 641 CB CYS 85 25.787 72.517 25.270 1.00 0.00 C ATOM 642 SG CYS 85 25.791 73.754 26.603 1.00 0.00 S ATOM 643 C CYS 85 28.220 72.573 25.082 1.00 0.00 C ATOM 644 O CYS 85 28.955 72.872 26.021 1.00 0.00 O ATOM 645 N CYS 86 28.439 72.999 23.828 1.00 0.00 N ATOM 646 CA CYS 86 29.468 73.960 23.569 1.00 0.00 C ATOM 647 CB CYS 86 29.749 74.177 22.072 1.00 0.00 C ATOM 648 SG CYS 86 30.394 72.689 21.253 1.00 0.00 S ATOM 649 C CYS 86 28.925 75.248 24.105 1.00 0.00 C ATOM 650 O CYS 86 27.765 75.324 24.507 1.00 0.00 O ATOM 651 N HIS 87 29.788 76.271 24.223 1.00 0.00 N ATOM 652 CA HIS 87 29.331 77.579 24.597 1.00 0.00 C ATOM 653 ND1 HIS 87 29.997 80.363 26.531 1.00 0.00 N ATOM 654 CG HIS 87 30.061 79.926 25.226 1.00 0.00 C ATOM 655 CB HIS 87 30.500 78.554 24.801 1.00 0.00 C ATOM 656 NE2 HIS 87 29.338 82.065 25.259 1.00 0.00 N ATOM 657 CD2 HIS 87 29.655 80.980 24.463 1.00 0.00 C ATOM 658 CE1 HIS 87 29.560 81.647 26.493 1.00 0.00 C ATOM 659 C HIS 87 28.501 78.107 23.456 1.00 0.00 C ATOM 660 O HIS 87 27.425 78.670 23.646 1.00 0.00 O ATOM 661 N ASP 88 29.004 77.873 22.228 1.00 0.00 N ATOM 662 CA ASP 88 28.500 78.301 20.948 1.00 0.00 C ATOM 663 CB ASP 88 29.424 77.902 19.792 1.00 0.00 C ATOM 664 CG ASP 88 30.783 78.505 20.084 1.00 0.00 C ATOM 665 OD1 ASP 88 30.849 79.713 20.426 1.00 0.00 O ATOM 666 OD2 ASP 88 31.780 77.745 19.975 1.00 0.00 O ATOM 667 C ASP 88 27.205 77.604 20.677 1.00 0.00 C ATOM 668 O ASP 88 26.496 77.930 19.726 1.00 0.00 O ATOM 669 N PHE 89 26.922 76.551 21.452 1.00 0.00 N ATOM 670 CA PHE 89 25.707 75.799 21.335 1.00 0.00 C ATOM 671 CB PHE 89 25.674 74.720 22.438 1.00 0.00 C ATOM 672 CG PHE 89 24.291 74.422 22.892 1.00 0.00 C ATOM 673 CD1 PHE 89 23.421 73.639 22.170 1.00 0.00 C ATOM 674 CD2 PHE 89 23.876 74.933 24.101 1.00 0.00 C ATOM 675 CE1 PHE 89 22.151 73.388 22.646 1.00 0.00 C ATOM 676 CE2 PHE 89 22.609 74.675 24.566 1.00 0.00 C ATOM 677 CZ PHE 89 21.737 73.900 23.845 1.00 0.00 C ATOM 678 C PHE 89 24.518 76.703 21.478 1.00 0.00 C ATOM 679 O PHE 89 23.654 76.732 20.602 1.00 0.00 O ATOM 680 N ASP 90 24.470 77.504 22.558 1.00 0.00 N ATOM 681 CA ASP 90 23.316 78.319 22.787 1.00 0.00 C ATOM 682 CB ASP 90 23.457 79.228 24.024 1.00 0.00 C ATOM 683 CG ASP 90 23.297 78.431 25.314 1.00 0.00 C ATOM 684 OD1 ASP 90 22.743 77.305 25.272 1.00 0.00 O ATOM 685 OD2 ASP 90 23.718 78.959 26.377 1.00 0.00 O ATOM 686 C ASP 90 23.120 79.254 21.636 1.00 0.00 C ATOM 687 O ASP 90 22.015 79.370 21.112 1.00 0.00 O ATOM 688 N GLU 91 24.190 79.942 21.197 1.00 0.00 N ATOM 689 CA GLU 91 24.036 80.938 20.175 1.00 0.00 C ATOM 690 CB GLU 91 25.337 81.718 19.898 1.00 0.00 C ATOM 691 CG GLU 91 26.524 80.831 19.511 1.00 0.00 C ATOM 692 CD GLU 91 27.671 81.743 19.107 1.00 0.00 C ATOM 693 OE1 GLU 91 28.080 82.587 19.947 1.00 0.00 O ATOM 694 OE2 GLU 91 28.149 81.612 17.945 1.00 0.00 O ATOM 695 C GLU 91 23.580 80.336 18.880 1.00 0.00 C ATOM 696 O GLU 91 22.621 80.822 18.280 1.00 0.00 O ATOM 697 N LEU 92 24.224 79.254 18.402 1.00 0.00 N ATOM 698 CA LEU 92 23.823 78.779 17.103 1.00 0.00 C ATOM 699 CB LEU 92 24.752 77.809 16.361 1.00 0.00 C ATOM 700 CG LEU 92 24.228 77.592 14.920 1.00 0.00 C ATOM 701 CD1 LEU 92 24.286 78.911 14.126 1.00 0.00 C ATOM 702 CD2 LEU 92 24.936 76.435 14.198 1.00 0.00 C ATOM 703 C LEU 92 22.473 78.137 17.136 1.00 0.00 C ATOM 704 O LEU 92 21.793 78.118 16.111 1.00 0.00 O ATOM 705 N CYS 93 22.088 77.502 18.260 1.00 0.00 N ATOM 706 CA CYS 93 20.802 76.866 18.325 1.00 0.00 C ATOM 707 CB CYS 93 20.583 76.098 19.641 1.00 0.00 C ATOM 708 SG CYS 93 19.024 75.155 19.659 1.00 0.00 S ATOM 709 C CYS 93 19.731 77.916 18.230 1.00 0.00 C ATOM 710 O CYS 93 18.770 77.759 17.477 1.00 0.00 O ATOM 711 N LEU 94 19.880 79.031 18.980 1.00 0.00 N ATOM 712 CA LEU 94 18.876 80.062 18.983 1.00 0.00 C ATOM 713 CB LEU 94 19.188 81.241 19.933 1.00 0.00 C ATOM 714 CG LEU 94 19.291 80.893 21.436 1.00 0.00 C ATOM 715 CD1 LEU 94 19.279 82.166 22.298 1.00 0.00 C ATOM 716 CD2 LEU 94 18.237 79.859 21.862 1.00 0.00 C ATOM 717 C LEU 94 18.790 80.642 17.609 1.00 0.00 C ATOM 718 O LEU 94 17.698 80.834 17.074 1.00 0.00 O ATOM 719 N LYS 95 17.815 76.973 18.031 1.00 0.00 N ATOM 720 CA LYS 95 16.896 77.382 17.006 1.00 0.00 C ATOM 721 CB LYS 95 17.063 78.859 16.612 1.00 0.00 C ATOM 722 CG LYS 95 16.014 79.337 15.609 1.00 0.00 C ATOM 723 CD LYS 95 14.589 79.321 16.164 1.00 0.00 C ATOM 724 CE LYS 95 14.319 80.391 17.223 1.00 0.00 C ATOM 725 NZ LYS 95 12.873 80.436 17.535 1.00 0.00 N ATOM 726 C LYS 95 17.168 76.544 15.800 1.00 0.00 C ATOM 727 O LYS 95 16.299 76.361 14.948 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 63.94 59.0 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 69.61 55.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 46.47 68.2 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.03 44.4 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 85.34 45.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 85.49 44.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 90.44 45.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 94.88 30.4 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 91.70 35.3 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 96.19 27.8 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 90.02 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.75 22.2 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 86.49 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 79.33 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 105.17 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 82.02 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 82.02 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 80.45 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 87.99 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.36 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.36 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0591 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.46 29 100.0 29 CRMSCA BURIED . . . . . . . . 2.10 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.49 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.62 142 100.0 142 CRMSMC BURIED . . . . . . . . 2.13 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.55 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.36 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.65 103 100.0 103 CRMSSC BURIED . . . . . . . . 4.29 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.58 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.69 219 100.0 219 CRMSALL BURIED . . . . . . . . 3.27 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.874 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.020 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.492 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.966 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.127 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 1.549 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.614 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 3.367 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 3.735 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 3.302 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.714 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.858 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 2.337 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 16 25 30 39 40 40 40 DISTCA CA (P) 40.00 62.50 75.00 97.50 100.00 40 DISTCA CA (RMS) 0.60 1.04 1.37 2.20 2.36 DISTCA ALL (N) 91 148 192 261 299 303 303 DISTALL ALL (P) 30.03 48.84 63.37 86.14 98.68 303 DISTALL ALL (RMS) 0.66 1.09 1.52 2.37 3.33 DISTALL END of the results output