####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 20 ( 294), selected 20 , name T0543TS055_1_1-D3 # Molecule2: number of CA atoms 386 ( 3136), selected 20 , name T0543-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS055_1_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 142 - 157 4.59 7.21 LCS_AVERAGE: 3.90 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 147 - 155 1.91 11.83 LCS_AVERAGE: 1.81 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 148 - 152 0.96 11.37 LCS_AVERAGE: 1.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 20 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 141 S 141 3 4 15 3 3 3 4 4 4 6 6 7 9 9 9 10 12 13 13 14 14 15 17 LCS_GDT H 142 H 142 3 4 16 3 3 3 4 4 8 9 10 11 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT W 143 W 143 3 5 16 3 3 3 4 5 8 9 10 11 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT V 144 V 144 3 5 16 3 3 4 5 6 8 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT D 145 D 145 3 5 16 3 3 4 4 5 5 8 11 12 12 13 14 14 16 16 16 16 16 16 17 LCS_GDT D 146 D 146 3 6 16 3 3 4 4 6 8 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT D 147 D 147 4 9 16 3 3 4 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT C 148 C 148 5 9 16 3 3 5 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT E 149 E 149 5 9 16 3 4 5 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT E 150 E 150 5 9 16 3 4 5 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT I 151 I 151 5 9 16 3 4 5 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT K 152 K 152 5 9 16 3 4 5 7 8 9 9 10 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT V 153 V 153 4 9 16 3 3 4 5 7 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT P 154 P 154 4 9 16 3 3 4 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT E 155 E 155 4 9 16 3 4 4 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 LCS_GDT C 156 C 156 4 6 16 3 4 4 5 6 6 6 6 8 9 10 13 14 16 16 16 16 16 17 17 LCS_GDT P 157 P 157 4 6 16 3 4 4 5 6 6 6 6 7 8 12 13 14 16 16 16 16 16 17 17 LCS_GDT A 158 A 158 4 6 10 3 4 4 5 6 6 6 6 7 8 8 8 8 9 9 9 12 12 13 15 LCS_GDT G 159 G 159 4 6 10 3 4 4 5 6 6 6 6 7 8 8 8 9 10 10 11 12 13 17 17 LCS_GDT F 160 F 160 4 6 10 3 4 4 5 6 6 6 6 7 8 8 8 9 10 10 11 12 15 17 17 LCS_AVERAGE LCS_A: 2.25 ( 1.02 1.81 3.90 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 3 4 5 7 8 9 9 11 12 12 13 14 14 16 16 16 16 16 17 17 GDT PERCENT_AT 0.78 1.04 1.30 1.81 2.07 2.33 2.33 2.85 3.11 3.11 3.37 3.63 3.63 4.15 4.15 4.15 4.15 4.15 4.40 4.40 GDT RMS_LOCAL 0.03 0.40 0.96 1.55 1.72 1.91 1.91 2.78 3.01 3.01 3.52 3.85 3.85 4.59 4.59 4.59 4.59 4.59 5.88 5.29 GDT RMS_ALL_AT 15.50 11.14 11.37 12.84 12.00 11.83 11.83 8.45 8.57 8.57 8.29 7.69 7.69 7.21 7.21 7.21 7.21 7.21 6.80 6.95 # Checking swapping # possible swapping detected: D 146 D 146 # possible swapping detected: E 149 E 149 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 141 S 141 16.952 0 0.051 0.103 19.104 0.000 0.000 LGA H 142 H 142 10.375 0 0.183 1.204 12.709 0.119 9.143 LGA W 143 W 143 8.008 0 0.621 1.306 12.609 11.548 6.429 LGA V 144 V 144 0.726 0 0.630 1.167 3.372 67.619 69.048 LGA D 145 D 145 3.867 0 0.337 0.449 7.751 43.214 27.560 LGA D 146 D 146 3.760 0 0.567 1.282 8.876 53.810 31.429 LGA D 147 D 147 1.421 0 0.492 0.988 2.915 71.190 68.036 LGA C 148 C 148 3.492 0 0.079 0.294 6.193 57.262 47.222 LGA E 149 E 149 1.987 0 0.558 0.965 3.096 69.048 65.079 LGA E 150 E 150 1.924 0 0.053 0.878 5.288 64.881 55.079 LGA I 151 I 151 3.595 0 0.487 0.914 5.573 43.690 40.774 LGA K 152 K 152 5.524 0 0.124 0.845 12.761 30.357 15.661 LGA V 153 V 153 3.347 0 0.131 0.999 6.744 51.905 43.197 LGA P 154 P 154 1.489 0 0.663 0.580 2.563 70.952 68.367 LGA E 155 E 155 2.690 0 0.485 0.456 7.001 47.619 34.603 LGA C 156 C 156 8.026 0 0.131 0.221 11.074 7.381 4.921 LGA P 157 P 157 8.785 0 0.192 0.370 12.774 1.905 2.857 LGA A 158 A 158 14.828 0 0.633 0.586 16.056 0.000 0.000 LGA G 159 G 159 15.861 0 0.307 0.307 16.142 0.000 0.000 LGA F 160 F 160 15.484 0 0.211 0.966 17.609 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 20 80 80 100.00 158 158 100.00 386 SUMMARY(RMSD_GDC): 6.685 6.679 7.159 1.794 1.527 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 20 386 4.0 11 2.78 2.461 2.362 0.382 LGA_LOCAL RMSD: 2.781 Number of atoms: 11 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.449 Number of assigned atoms: 20 Std_ASGN_ATOMS RMSD: 6.685 Standard rmsd on all 20 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.877210 * X + 0.239746 * Y + -0.415963 * Z + -19.886982 Y_new = 0.082200 * X + 0.778604 * Y + 0.622109 * Z + 85.490601 Z_new = 0.473018 * X + -0.579912 * Y + 0.663292 * Z + -9.446430 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 0.093434 -0.492713 -0.718430 [DEG: 5.3534 -28.2304 -41.1630 ] ZXZ: -2.552230 0.845588 2.457368 [DEG: -146.2320 48.4486 140.7968 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS055_1_1-D3 REMARK 2: T0543-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS055_1_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 20 386 4.0 11 2.78 2.362 6.69 REMARK ---------------------------------------------------------- MOLECULE T0543TS055_1_1-D3 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PARENT number 1 REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT 3IJE_B ATOM 2064 N SER 141 -11.951 79.654 19.355 1.00 0.00 N ATOM 2065 CA SER 141 -10.542 79.920 19.270 1.00 0.00 C ATOM 2066 C SER 141 -10.000 79.596 17.909 1.00 0.00 C ATOM 2067 O SER 141 -10.684 79.072 17.031 1.00 0.00 O ATOM 2068 CB SER 141 -9.801 79.134 20.334 1.00 0.00 C ATOM 2069 OG SER 141 -9.849 77.754 20.097 1.00 0.00 O ATOM 2070 H SER 141 -12.265 78.804 19.802 1.00 0.00 H ATOM 2071 HA SER 141 -10.277 80.942 19.547 1.00 0.00 H ATOM 2072 HB2 SER 141 -8.759 79.456 20.343 1.00 0.00 H ATOM 2073 HB3 SER 141 -10.252 79.343 21.302 1.00 0.00 H ATOM 2074 HG SER 141 -9.369 77.294 20.790 1.00 0.00 H ATOM 2075 N HIS 142 -8.695 79.889 17.751 1.00 0.00 N ATOM 2076 CA HIS 142 -7.901 79.658 16.586 1.00 0.00 C ATOM 2077 C HIS 142 -7.593 78.234 16.251 1.00 0.00 C ATOM 2078 O HIS 142 -6.862 77.537 16.956 1.00 0.00 O ATOM 2079 CB HIS 142 -6.579 80.422 16.724 1.00 0.00 C ATOM 2080 CG HIS 142 -5.726 80.374 15.495 1.00 0.00 C ATOM 2081 ND1 HIS 142 -4.835 79.351 15.248 1.00 0.00 N ATOM 2082 CD2 HIS 142 -5.626 81.223 14.445 1.00 0.00 C ATOM 2083 CE1 HIS 142 -4.224 79.573 14.096 1.00 0.00 C ATOM 2084 NE2 HIS 142 -4.687 80.701 13.590 1.00 0.00 N ATOM 2085 H HIS 142 -8.269 80.316 18.562 1.00 0.00 H ATOM 2086 HA HIS 142 -8.455 79.961 15.698 1.00 0.00 H ATOM 2087 HB2 HIS 142 -6.774 81.476 16.927 1.00 0.00 H ATOM 2088 HB3 HIS 142 -5.985 80.001 17.534 1.00 0.00 H ATOM 2089 HD1 HIS 142 -4.718 78.524 15.797 1.00 0.00 H ATOM 2090 HD2 HIS 142 -6.126 82.160 14.199 1.00 0.00 H ATOM 2091 HE1 HIS 142 -3.478 78.873 13.720 1.00 0.00 H ATOM 2092 N TRP 143 -8.148 77.827 15.090 1.00 0.00 N ATOM 2093 CA TRP 143 -8.058 76.534 14.480 1.00 0.00 C ATOM 2094 C TRP 143 -7.942 76.832 13.003 1.00 0.00 C ATOM 2095 O TRP 143 -8.488 77.820 12.518 1.00 0.00 O ATOM 2096 CB TRP 143 -9.274 75.661 14.795 1.00 0.00 C ATOM 2097 CG TRP 143 -9.475 75.419 16.260 1.00 0.00 C ATOM 2098 CD1 TRP 143 -10.356 76.060 17.078 1.00 0.00 C ATOM 2099 CD2 TRP 143 -8.782 74.470 17.080 1.00 0.00 C ATOM 2100 NE1 TRP 143 -10.256 75.571 18.358 1.00 0.00 N ATOM 2101 CE2 TRP 143 -9.294 74.592 18.383 1.00 0.00 C ATOM 2102 CE3 TRP 143 -7.775 73.528 16.835 1.00 0.00 C ATOM 2103 CZ2 TRP 143 -8.839 73.816 19.436 1.00 0.00 C ATOM 2104 CZ3 TRP 143 -7.319 72.748 17.892 1.00 0.00 C ATOM 2105 CH2 TRP 143 -7.836 72.888 19.155 1.00 0.00 H ATOM 2106 H TRP 143 -8.679 78.552 14.628 1.00 0.00 H ATOM 2107 HA TRP 143 -7.105 76.071 14.735 1.00 0.00 H ATOM 2108 HB2 TRP 143 -10.185 76.135 14.429 1.00 0.00 H ATOM 2109 HB3 TRP 143 -9.164 74.681 14.329 1.00 0.00 H ATOM 2110 HD1 TRP 143 -10.981 76.826 16.625 1.00 0.00 H ATOM 2111 HE1 TRP 143 -10.798 75.882 19.151 1.00 0.00 H ATOM 2112 HE3 TRP 143 -7.331 73.375 15.852 1.00 0.00 H ATOM 2113 HZ2 TRP 143 -9.278 73.959 20.425 1.00 0.00 H ATOM 2114 HZ3 TRP 143 -6.534 72.019 17.688 1.00 0.00 H ATOM 2115 HH2 TRP 143 -7.451 72.255 19.955 1.00 0.00 H ATOM 2116 N VAL 144 -7.251 75.951 12.252 1.00 0.00 N ATOM 2117 CA VAL 144 -6.964 76.177 10.853 1.00 0.00 C ATOM 2118 C VAL 144 -7.294 75.044 9.917 1.00 0.00 C ATOM 2119 O VAL 144 -7.498 73.904 10.311 1.00 0.00 O ATOM 2120 CB VAL 144 -5.474 76.521 10.665 1.00 0.00 C ATOM 2121 CG1 VAL 144 -5.128 77.809 11.398 1.00 0.00 C ATOM 2122 CG2 VAL 144 -4.597 75.379 11.155 1.00 0.00 C ATOM 2123 H VAL 144 -6.925 75.102 12.691 1.00 0.00 H ATOM 2124 HA VAL 144 -7.495 77.051 10.475 1.00 0.00 H ATOM 2125 HB VAL 144 -5.270 76.643 9.601 1.00 0.00 H ATOM 2126 HG11 VAL 144 -4.072 78.038 11.255 1.00 0.00 H ATOM 2127 HG12 VAL 144 -5.732 78.626 11.004 1.00 0.00 H ATOM 2128 HG13 VAL 144 -5.330 77.687 12.462 1.00 0.00 H ATOM 2129 HG21 VAL 144 -3.548 75.639 11.014 1.00 0.00 H ATOM 2130 HG22 VAL 144 -4.789 75.203 12.213 1.00 0.00 H ATOM 2131 HG23 VAL 144 -4.826 74.477 10.588 1.00 0.00 H ATOM 2132 N ASP 145 -7.321 75.356 8.599 1.00 0.00 N ATOM 2133 CA ASP 145 -7.401 74.343 7.588 1.00 0.00 C ATOM 2134 C ASP 145 -8.606 73.463 7.697 1.00 0.00 C ATOM 2135 O ASP 145 -8.428 72.271 7.919 1.00 0.00 O ATOM 2136 CB ASP 145 -6.139 73.478 7.623 1.00 0.00 C ATOM 2137 CG ASP 145 -4.882 74.179 7.128 1.00 0.00 C ATOM 2138 OD1 ASP 145 -5.006 75.193 6.482 1.00 0.00 O ATOM 2139 OD2 ASP 145 -3.811 73.790 7.528 1.00 0.00 O ATOM 2140 H ASP 145 -7.285 76.327 8.321 1.00 0.00 H ATOM 2141 HA ASP 145 -7.382 74.804 6.600 1.00 0.00 H ATOM 2142 HB2 ASP 145 -5.945 73.032 8.600 1.00 0.00 H ATOM 2143 HB3 ASP 145 -6.422 72.698 6.916 1.00 0.00 H ATOM 2144 N ASP 146 -9.842 73.968 7.497 1.00 0.00 N ATOM 2145 CA ASP 146 -10.979 73.083 7.561 1.00 0.00 C ATOM 2146 C ASP 146 -11.666 72.704 6.270 1.00 0.00 C ATOM 2147 O ASP 146 -12.844 72.377 6.372 1.00 0.00 O ATOM 2148 CB ASP 146 -12.139 73.552 8.478 1.00 0.00 C ATOM 2149 CG ASP 146 -12.939 74.803 8.227 1.00 0.00 C ATOM 2150 OD1 ASP 146 -12.335 75.867 7.959 1.00 0.00 O ATOM 2151 OD2 ASP 146 -14.188 74.719 8.359 1.00 0.00 O ATOM 2152 H ASP 146 -9.991 74.948 7.303 1.00 0.00 H ATOM 2153 HA ASP 146 -10.669 72.109 7.941 1.00 0.00 H ATOM 2154 HB2 ASP 146 -12.898 72.787 8.643 1.00 0.00 H ATOM 2155 HB3 ASP 146 -11.590 73.726 9.405 1.00 0.00 H ATOM 2156 N ASP 147 -10.982 72.695 5.078 1.00 0.00 N ATOM 2157 CA ASP 147 -11.553 72.337 3.800 1.00 0.00 C ATOM 2158 C ASP 147 -10.573 71.368 3.305 1.00 0.00 C ATOM 2159 O ASP 147 -10.303 71.328 2.115 1.00 0.00 O ATOM 2160 CB ASP 147 -11.697 73.301 2.602 1.00 0.00 C ATOM 2161 CG ASP 147 -12.807 73.015 1.632 1.00 0.00 C ATOM 2162 OD1 ASP 147 -13.945 72.749 2.093 1.00 0.00 O ATOM 2163 OD2 ASP 147 -12.535 73.083 0.405 1.00 0.00 O ATOM 2164 H ASP 147 -10.010 72.963 5.125 1.00 0.00 H ATOM 2165 HA ASP 147 -12.586 72.014 3.935 1.00 0.00 H ATOM 2166 HB2 ASP 147 -11.768 74.350 2.893 1.00 0.00 H ATOM 2167 HB3 ASP 147 -10.745 73.126 2.100 1.00 0.00 H ATOM 2168 N CYS 148 -10.067 70.504 4.201 1.00 0.00 N ATOM 2169 CA CYS 148 -9.132 69.529 3.730 1.00 0.00 C ATOM 2170 C CYS 148 -9.842 68.403 3.148 1.00 0.00 C ATOM 2171 O CYS 148 -10.999 68.158 3.443 1.00 0.00 O ATOM 2172 CB CYS 148 -8.395 69.096 4.997 1.00 0.00 C ATOM 2173 SG CYS 148 -7.405 70.398 5.770 1.00 0.00 S ATOM 2174 H CYS 148 -10.314 70.516 5.179 1.00 0.00 H ATOM 2175 HA CYS 148 -8.394 69.934 3.039 1.00 0.00 H ATOM 2176 HB2 CYS 148 -9.107 68.768 5.754 1.00 0.00 H ATOM 2177 HB3 CYS 148 -7.703 68.285 4.772 1.00 0.00 H ATOM 2178 HG CYS 148 -6.958 69.653 6.776 1.00 0.00 H ATOM 2179 N GLU 149 -9.230 67.721 2.192 1.00 0.00 N ATOM 2180 CA GLU 149 -10.015 66.600 1.825 1.00 0.00 C ATOM 2181 C GLU 149 -10.110 65.594 2.922 1.00 0.00 C ATOM 2182 O GLU 149 -11.186 65.405 3.482 1.00 0.00 O ATOM 2183 CB GLU 149 -9.441 65.948 0.566 1.00 0.00 C ATOM 2184 CG GLU 149 -9.639 66.758 -0.707 1.00 0.00 C ATOM 2185 CD GLU 149 -9.015 66.074 -1.892 1.00 0.00 C ATOM 2186 OE1 GLU 149 -9.330 64.933 -2.129 1.00 0.00 O ATOM 2187 OE2 GLU 149 -8.311 66.727 -2.627 1.00 0.00 O ATOM 2188 H GLU 149 -8.348 67.877 1.725 1.00 0.00 H ATOM 2189 HA GLU 149 -11.053 66.904 1.692 1.00 0.00 H ATOM 2190 HB2 GLU 149 -8.374 65.801 0.741 1.00 0.00 H ATOM 2191 HB3 GLU 149 -9.928 64.978 0.458 1.00 0.00 H ATOM 2192 HG2 GLU 149 -10.683 66.977 -0.924 1.00 0.00 H ATOM 2193 HG3 GLU 149 -9.108 67.687 -0.504 1.00 0.00 H ATOM 2194 N GLU 150 -8.964 64.990 3.296 1.00 0.00 N ATOM 2195 CA GLU 150 -8.880 63.984 4.328 1.00 0.00 C ATOM 2196 C GLU 150 -7.429 63.819 4.638 1.00 0.00 C ATOM 2197 O GLU 150 -6.622 63.630 3.728 1.00 0.00 O ATOM 2198 CB GLU 150 -9.505 62.658 3.890 1.00 0.00 C ATOM 2199 CG GLU 150 -9.634 61.626 5.001 1.00 0.00 C ATOM 2200 CD GLU 150 -10.444 62.160 6.150 1.00 0.00 C ATOM 2201 OE1 GLU 150 -11.571 62.535 5.934 1.00 0.00 O ATOM 2202 OE2 GLU 150 -9.978 62.089 7.263 1.00 0.00 O ATOM 2203 H GLU 150 -8.123 65.272 2.814 1.00 0.00 H ATOM 2204 HA GLU 150 -9.555 64.237 5.147 1.00 0.00 H ATOM 2205 HB2 GLU 150 -10.493 62.888 3.491 1.00 0.00 H ATOM 2206 HB3 GLU 150 -8.876 62.256 3.094 1.00 0.00 H ATOM 2207 HG2 GLU 150 -10.059 60.680 4.668 1.00 0.00 H ATOM 2208 HG3 GLU 150 -8.606 61.467 5.325 1.00 0.00 H ATOM 2209 N ILE 151 -7.040 63.895 5.919 1.00 0.00 N ATOM 2210 CA ILE 151 -5.648 63.796 6.210 1.00 0.00 C ATOM 2211 C ILE 151 -5.339 62.359 6.476 1.00 0.00 C ATOM 2212 O ILE 151 -4.174 61.970 6.533 1.00 0.00 O ATOM 2213 CB ILE 151 -5.238 64.656 7.418 1.00 0.00 C ATOM 2214 CG1 ILE 151 -5.885 64.123 8.698 1.00 0.00 C ATOM 2215 CG2 ILE 151 -5.621 66.110 7.190 1.00 0.00 C ATOM 2216 CD1 ILE 151 -5.366 64.772 9.962 1.00 0.00 C ATOM 2217 H ILE 151 -7.694 64.019 6.679 1.00 0.00 H ATOM 2218 HA ILE 151 -5.054 64.131 5.360 1.00 0.00 H ATOM 2219 HB ILE 151 -4.159 64.583 7.557 1.00 0.00 H ATOM 2220 HG12 ILE 151 -6.958 64.294 8.616 1.00 0.00 H ATOM 2221 HG13 ILE 151 -5.691 63.050 8.736 1.00 0.00 H ATOM 2222 HG21 ILE 151 -5.324 66.705 8.055 1.00 0.00 H ATOM 2223 HG22 ILE 151 -5.115 66.486 6.302 1.00 0.00 H ATOM 2224 HG23 ILE 151 -6.700 66.186 7.052 1.00 0.00 H ATOM 2225 HD11 ILE 151 -5.871 64.342 10.827 1.00 0.00 H ATOM 2226 HD12 ILE 151 -4.292 64.600 10.046 1.00 0.00 H ATOM 2227 HD13 ILE 151 -5.559 65.843 9.926 1.00 0.00 H ATOM 2228 N LYS 152 -6.374 61.507 6.599 1.00 0.00 N ATOM 2229 CA LYS 152 -6.068 60.128 6.826 1.00 0.00 C ATOM 2230 C LYS 152 -5.566 59.638 5.523 1.00 0.00 C ATOM 2231 O LYS 152 -4.642 58.832 5.435 1.00 0.00 O ATOM 2232 CB LYS 152 -7.282 59.327 7.299 1.00 0.00 C ATOM 2233 CG LYS 152 -7.768 59.685 8.697 1.00 0.00 C ATOM 2234 CD LYS 152 -8.981 58.857 9.091 1.00 0.00 C ATOM 2235 CE LYS 152 -9.480 59.229 10.479 1.00 0.00 C ATOM 2236 NZ LYS 152 -10.680 58.440 10.870 1.00 0.00 N ATOM 2237 H LYS 152 -7.341 61.793 6.539 1.00 0.00 H ATOM 2238 HA LYS 152 -5.338 60.040 7.632 1.00 0.00 H ATOM 2239 HB2 LYS 152 -8.082 59.507 6.580 1.00 0.00 H ATOM 2240 HB3 LYS 152 -7.001 58.274 7.272 1.00 0.00 H ATOM 2241 HG2 LYS 152 -6.957 59.502 9.402 1.00 0.00 H ATOM 2242 HG3 LYS 152 -8.029 60.743 8.712 1.00 0.00 H ATOM 2243 HD2 LYS 152 -9.773 59.031 8.360 1.00 0.00 H ATOM 2244 HD3 LYS 152 -8.702 57.803 9.077 1.00 0.00 H ATOM 2245 HE2 LYS 152 -8.677 59.047 11.192 1.00 0.00 H ATOM 2246 HE3 LYS 152 -9.729 60.291 10.479 1.00 0.00 H ATOM 2247 HZ1 LYS 152 -10.978 58.718 11.794 1.00 0.00 H ATOM 2248 HZ2 LYS 152 -11.425 58.611 10.210 1.00 0.00 H ATOM 2249 HZ3 LYS 152 -10.449 57.457 10.871 1.00 0.00 H ATOM 2250 N VAL 153 -6.150 60.188 4.453 1.00 0.00 N ATOM 2251 CA VAL 153 -5.709 59.839 3.149 1.00 0.00 C ATOM 2252 C VAL 153 -4.403 60.512 2.922 1.00 0.00 C ATOM 2253 O VAL 153 -4.240 61.727 3.034 1.00 0.00 O ATOM 2254 CB VAL 153 -6.714 60.253 2.057 1.00 0.00 C ATOM 2255 CG1 VAL 153 -6.149 59.959 0.675 1.00 0.00 C ATOM 2256 CG2 VAL 153 -8.041 59.535 2.253 1.00 0.00 C ATOM 2257 H VAL 153 -6.905 60.850 4.556 1.00 0.00 H ATOM 2258 HA VAL 153 -5.565 58.762 3.054 1.00 0.00 H ATOM 2259 HB VAL 153 -6.916 61.320 2.148 1.00 0.00 H ATOM 2260 HG11 VAL 153 -6.872 60.258 -0.084 1.00 0.00 H ATOM 2261 HG12 VAL 153 -5.224 60.517 0.534 1.00 0.00 H ATOM 2262 HG13 VAL 153 -5.949 58.893 0.583 1.00 0.00 H ATOM 2263 HG21 VAL 153 -8.739 59.839 1.473 1.00 0.00 H ATOM 2264 HG22 VAL 153 -7.881 58.458 2.197 1.00 0.00 H ATOM 2265 HG23 VAL 153 -8.453 59.791 3.228 1.00 0.00 H ATOM 2266 N PRO 154 -3.466 59.667 2.641 1.00 0.00 N ATOM 2267 CA PRO 154 -2.094 60.068 2.531 1.00 0.00 C ATOM 2268 C PRO 154 -1.809 60.678 1.199 1.00 0.00 C ATOM 2269 O PRO 154 -0.757 61.295 1.041 1.00 0.00 O ATOM 2270 CB PRO 154 -1.305 58.773 2.750 1.00 0.00 C ATOM 2271 CG PRO 154 -2.199 57.702 2.225 1.00 0.00 C ATOM 2272 CD PRO 154 -3.598 58.155 2.549 1.00 0.00 C ATOM 2273 HA PRO 154 -1.829 60.874 3.233 1.00 0.00 H ATOM 2274 HB2 PRO 154 -0.345 58.790 2.212 1.00 0.00 H ATOM 2275 HB3 PRO 154 -1.077 58.616 3.814 1.00 0.00 H ATOM 2276 HG2 PRO 154 -2.068 57.569 1.141 1.00 0.00 H ATOM 2277 HG3 PRO 154 -1.977 56.733 2.697 1.00 0.00 H ATOM 2278 HD2 PRO 154 -4.319 57.869 1.769 1.00 0.00 H ATOM 2279 HD3 PRO 154 -3.964 57.730 3.496 1.00 0.00 H ATOM 2280 N GLU 155 -2.705 60.496 0.215 1.00 0.00 N ATOM 2281 CA GLU 155 -2.426 61.045 -1.074 1.00 0.00 C ATOM 2282 C GLU 155 -2.816 62.483 -1.023 1.00 0.00 C ATOM 2283 O GLU 155 -2.368 63.274 -1.852 1.00 0.00 O ATOM 2284 CB GLU 155 -3.179 60.307 -2.183 1.00 0.00 C ATOM 2285 CG GLU 155 -2.756 58.857 -2.373 1.00 0.00 C ATOM 2286 CD GLU 155 -3.568 58.187 -3.446 1.00 0.00 C ATOM 2287 OE1 GLU 155 -4.407 58.837 -4.022 1.00 0.00 O ATOM 2288 OE2 GLU 155 -3.275 57.059 -3.768 1.00 0.00 O ATOM 2289 H GLU 155 -3.565 59.987 0.356 1.00 0.00 H ATOM 2290 HA GLU 155 -1.364 60.933 -1.302 1.00 0.00 H ATOM 2291 HB2 GLU 155 -4.238 60.344 -1.927 1.00 0.00 H ATOM 2292 HB3 GLU 155 -3.008 60.858 -3.107 1.00 0.00 H ATOM 2293 HG2 GLU 155 -1.695 58.740 -2.595 1.00 0.00 H ATOM 2294 HG3 GLU 155 -2.977 58.397 -1.411 1.00 0.00 H ATOM 2295 N CYS 156 -3.626 62.859 -0.014 1.00 0.00 N ATOM 2296 CA CYS 156 -4.059 64.221 0.059 1.00 0.00 C ATOM 2297 C CYS 156 -3.131 64.738 1.097 1.00 0.00 C ATOM 2298 O CYS 156 -3.112 64.135 2.166 1.00 0.00 O ATOM 2299 CB CYS 156 -5.508 64.165 0.543 1.00 0.00 C ATOM 2300 SG CYS 156 -6.647 63.337 -0.591 1.00 0.00 S ATOM 2301 H CYS 156 -3.934 62.207 0.692 1.00 0.00 H ATOM 2302 HA CYS 156 -4.081 64.720 -0.910 1.00 0.00 H ATOM 2303 HB2 CYS 156 -5.569 63.619 1.486 1.00 0.00 H ATOM 2304 HB3 CYS 156 -5.898 65.174 0.681 1.00 0.00 H ATOM 2305 HG CYS 156 -6.447 64.162 -1.615 1.00 0.00 H ATOM 2306 N PRO 157 -2.360 65.773 0.834 1.00 0.00 N ATOM 2307 CA PRO 157 -1.445 66.321 1.807 1.00 0.00 C ATOM 2308 C PRO 157 -2.091 66.670 3.103 1.00 0.00 C ATOM 2309 O PRO 157 -3.060 67.427 3.136 1.00 0.00 O ATOM 2310 CB PRO 157 -0.877 67.564 1.114 1.00 0.00 C ATOM 2311 CG PRO 157 -1.012 67.272 -0.341 1.00 0.00 C ATOM 2312 CD PRO 157 -2.286 66.481 -0.473 1.00 0.00 C ATOM 2313 HA PRO 157 -0.701 65.588 2.152 1.00 0.00 H ATOM 2314 HB2 PRO 157 -1.435 68.470 1.393 1.00 0.00 H ATOM 2315 HB3 PRO 157 0.173 67.735 1.391 1.00 0.00 H ATOM 2316 HG2 PRO 157 -1.060 68.200 -0.930 1.00 0.00 H ATOM 2317 HG3 PRO 157 -0.150 66.700 -0.713 1.00 0.00 H ATOM 2318 HD2 PRO 157 -3.162 67.126 -0.633 1.00 0.00 H ATOM 2319 HD3 PRO 157 -2.250 65.773 -1.315 1.00 0.00 H ATOM 2320 N ALA 158 -1.541 66.081 4.181 1.00 0.00 N ATOM 2321 CA ALA 158 -2.008 66.298 5.511 1.00 0.00 C ATOM 2322 C ALA 158 -1.445 67.591 5.950 1.00 0.00 C ATOM 2323 O ALA 158 -2.029 68.300 6.768 1.00 0.00 O ATOM 2324 CB ALA 158 -1.603 65.167 6.446 1.00 0.00 C ATOM 2325 H ALA 158 -0.760 65.459 4.029 1.00 0.00 H ATOM 2326 HA ALA 158 -3.098 66.272 5.507 1.00 0.00 H ATOM 2327 HB1 ALA 158 -1.941 65.393 7.457 1.00 0.00 H ATOM 2328 HB2 ALA 158 -2.061 64.236 6.111 1.00 0.00 H ATOM 2329 HB3 ALA 158 -0.519 65.061 6.440 1.00 0.00 H ATOM 2330 N GLY 159 -0.274 67.932 5.394 1.00 0.00 N ATOM 2331 CA GLY 159 0.332 69.165 5.780 1.00 0.00 C ATOM 2332 C GLY 159 0.190 70.091 4.625 1.00 0.00 C ATOM 2333 O GLY 159 1.109 70.838 4.298 1.00 0.00 O ATOM 2334 H GLY 159 0.189 67.349 4.712 1.00 0.00 H ATOM 2335 HA2 GLY 159 -0.178 69.552 6.663 1.00 0.00 H ATOM 2336 HA3 GLY 159 1.381 68.986 6.017 1.00 0.00 H ATOM 2337 N PHE 160 -0.993 70.057 3.983 1.00 0.00 N ATOM 2338 CA PHE 160 -1.266 70.877 2.841 1.00 0.00 C ATOM 2339 C PHE 160 -0.915 72.323 3.181 1.00 0.00 C ATOM 2340 O PHE 160 -1.083 72.710 4.368 1.00 0.00 O ATOM 2341 OXT PHE 160 -0.464 73.055 2.261 1.00 0.00 O ATOM 2342 CB PHE 160 -2.730 70.747 2.419 1.00 0.00 C ATOM 2343 CG PHE 160 -3.067 71.501 1.164 1.00 0.00 C ATOM 2344 CD1 PHE 160 -2.853 70.931 -0.082 1.00 0.00 C ATOM 2345 CD2 PHE 160 -3.600 72.780 1.226 1.00 0.00 C ATOM 2346 CE1 PHE 160 -3.163 71.623 -1.238 1.00 0.00 C ATOM 2347 CE2 PHE 160 -3.912 73.473 0.074 1.00 0.00 C ATOM 2348 CZ PHE 160 -3.692 72.893 -1.160 1.00 0.00 C ATOM 2349 H PHE 160 -1.709 69.430 4.322 1.00 0.00 H ATOM 2350 HA PHE 160 -0.680 70.529 1.987 1.00 0.00 H ATOM 2351 HB2 PHE 160 -2.976 69.703 2.232 1.00 0.00 H ATOM 2352 HB3 PHE 160 -3.380 71.138 3.201 1.00 0.00 H ATOM 2353 HD1 PHE 160 -2.436 69.925 -0.144 1.00 0.00 H ATOM 2354 HD2 PHE 160 -3.772 73.237 2.202 1.00 0.00 H ATOM 2355 HE1 PHE 160 -2.990 71.164 -2.211 1.00 0.00 H ATOM 2356 HE2 PHE 160 -4.329 74.478 0.137 1.00 0.00 H ATOM 2357 HZ PHE 160 -3.937 73.440 -2.070 1.00 0.00 H TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 158 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.25 42.1 38 5.0 767 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 306 ARMSMC SURFACE . . . . . . . . 85.56 45.5 33 9.5 347 ARMSMC BURIED . . . . . . . . 97.62 20.0 5 1.2 420 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 81.67 38.9 18 5.4 334 ARMSSC1 RELIABLE SIDE CHAINS . 74.85 43.8 16 5.2 310 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 132 ARMSSC1 SURFACE . . . . . . . . 73.90 46.7 15 9.4 159 ARMSSC1 BURIED . . . . . . . . 112.77 0.0 3 1.7 175 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 51.99 53.8 13 5.3 247 ARMSSC2 RELIABLE SIDE CHAINS . 53.67 50.0 12 6.6 183 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 58.74 40.0 10 8.5 118 ARMSSC2 BURIED . . . . . . . . 14.53 100.0 3 2.3 129 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 61.80 50.0 4 5.6 71 ARMSSC3 RELIABLE SIDE CHAINS . 61.80 50.0 4 6.6 61 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC3 SURFACE . . . . . . . . 61.80 50.0 4 9.1 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 5.27 100.0 1 3.1 32 ARMSSC4 RELIABLE SIDE CHAINS . 5.27 100.0 1 3.1 32 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 5.27 100.0 1 4.5 22 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.69 (Number of atoms: 20) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.69 20 5.2 386 CRMSCA CRN = ALL/NP . . . . . 0.3343 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSCA SURFACE . . . . . . . . 6.63 17 9.7 176 CRMSCA BURIED . . . . . . . . 7.01 3 1.4 210 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.80 99 5.2 1902 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 758 CRMSMC SURFACE . . . . . . . . 6.68 84 9.6 872 CRMSMC BURIED . . . . . . . . 7.43 15 1.5 1030 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 7.96 78 4.9 1592 CRMSSC RELIABLE SIDE CHAINS . 8.20 70 5.2 1352 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 633 CRMSSC SURFACE . . . . . . . . 7.69 57 7.5 764 CRMSSC BURIED . . . . . . . . 8.65 21 2.5 828 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.34 158 5.0 3136 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 1245 CRMSALL SURFACE . . . . . . . . 7.08 125 8.5 1468 CRMSALL BURIED . . . . . . . . 8.27 33 2.0 1668 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.045 1.000 0.500 20 5.2 386 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRCA SURFACE . . . . . . . . 6.064 1.000 0.500 17 9.7 176 ERRCA BURIED . . . . . . . . 5.934 1.000 0.500 3 1.4 210 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.142 1.000 0.500 99 5.2 1902 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 758 ERRMC SURFACE . . . . . . . . 6.102 1.000 0.500 84 9.6 872 ERRMC BURIED . . . . . . . . 6.363 1.000 0.500 15 1.5 1030 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.081 1.000 0.500 78 4.9 1592 ERRSC RELIABLE SIDE CHAINS . 7.346 1.000 0.500 70 5.2 1352 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 633 ERRSC SURFACE . . . . . . . . 6.899 1.000 0.500 57 7.5 764 ERRSC BURIED . . . . . . . . 7.574 1.000 0.500 21 2.5 828 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.564 1.000 0.500 158 5.0 3136 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1245 ERRALL SURFACE . . . . . . . . 6.403 1.000 0.500 125 8.5 1468 ERRALL BURIED . . . . . . . . 7.171 1.000 0.500 33 2.0 1668 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 3 8 17 20 386 DISTCA CA (P) 0.00 0.52 0.78 2.07 4.40 386 DISTCA CA (RMS) 0.00 1.77 2.05 3.51 5.60 DISTCA ALL (N) 1 9 22 59 127 158 3136 DISTALL ALL (P) 0.03 0.29 0.70 1.88 4.05 3136 DISTALL ALL (RMS) 0.90 1.49 2.19 3.53 5.71 DISTALL END of the results output