####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 24 ( 190), selected 24 , name T0543TS045_1_1-D3 # Molecule2: number of CA atoms 386 ( 3136), selected 24 , name T0543-D3.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS045_1_1-D3.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 16 141 - 156 4.62 7.67 LCS_AVERAGE: 3.95 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 149 - 155 1.92 11.20 LONGEST_CONTINUOUS_SEGMENT: 7 158 - 164 1.25 22.97 LCS_AVERAGE: 1.55 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 151 - 155 0.86 10.49 LONGEST_CONTINUOUS_SEGMENT: 5 160 - 164 0.93 21.28 LCS_AVERAGE: 1.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 24 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT S 141 S 141 3 5 16 3 3 3 4 4 5 6 6 7 11 12 15 16 19 19 19 21 21 21 22 LCS_GDT H 142 H 142 4 5 16 3 3 4 4 4 5 6 6 9 11 12 15 16 19 20 20 21 21 21 22 LCS_GDT W 143 W 143 4 5 16 3 3 4 4 6 6 8 9 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT V 144 V 144 4 5 16 3 3 4 4 4 5 7 9 11 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT D 145 D 145 4 5 16 3 3 4 4 4 5 6 7 10 11 12 14 17 19 20 20 21 21 21 22 LCS_GDT D 146 D 146 3 4 16 3 3 3 4 4 5 7 8 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT D 147 D 147 3 4 16 3 3 3 4 4 5 6 9 11 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT C 148 C 148 3 3 16 3 3 3 3 4 5 7 8 11 11 15 16 17 19 20 20 21 21 21 22 LCS_GDT E 149 E 149 3 7 16 3 3 3 3 4 7 7 9 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT E 150 E 150 4 7 16 3 4 5 6 6 7 8 9 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT I 151 I 151 5 7 16 3 4 5 6 6 7 8 9 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT K 152 K 152 5 7 16 3 4 5 6 6 7 8 9 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT V 153 V 153 5 7 16 3 4 5 6 6 7 8 10 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT P 154 P 154 5 7 16 3 4 5 6 6 7 7 10 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT E 155 E 155 5 7 16 3 4 5 6 6 7 7 10 11 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT C 156 C 156 3 5 16 3 3 4 4 5 6 8 10 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT P 157 P 157 3 5 15 3 3 4 4 5 6 7 10 11 11 12 14 14 14 15 19 19 20 21 22 LCS_GDT A 158 A 158 3 7 14 3 4 6 7 7 7 7 10 11 11 12 14 14 14 15 16 19 20 20 21 LCS_GDT G 159 G 159 4 7 14 3 4 4 7 7 7 7 10 11 11 12 14 14 14 15 19 19 20 21 22 LCS_GDT F 160 F 160 5 7 14 3 4 6 7 7 7 8 10 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT V 161 V 161 5 7 14 4 4 6 7 7 7 8 10 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT R 162 R 162 5 7 14 4 4 6 7 7 7 7 10 12 14 15 16 17 19 20 20 21 21 21 22 LCS_GDT P 163 P 163 5 7 13 4 4 6 7 7 7 7 7 8 10 11 12 16 19 20 20 21 21 21 22 LCS_GDT P 164 P 164 5 7 12 4 4 6 7 7 7 7 7 11 11 12 13 16 18 20 20 21 21 21 22 LCS_AVERAGE LCS_A: 2.19 ( 1.06 1.55 3.95 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 4 6 7 7 7 8 10 12 14 15 16 17 19 20 20 21 21 21 22 GDT PERCENT_AT 1.04 1.04 1.55 1.81 1.81 1.81 2.07 2.59 3.11 3.63 3.89 4.15 4.40 4.92 5.18 5.18 5.44 5.44 5.44 5.70 GDT RMS_LOCAL 0.18 0.18 0.91 1.25 1.25 1.25 2.53 3.31 3.63 3.92 4.08 4.24 4.46 4.94 5.14 5.14 5.40 5.40 5.40 5.95 GDT RMS_ALL_AT 24.82 24.82 22.10 22.97 22.97 22.97 7.32 14.01 6.88 6.78 6.76 6.73 6.72 6.76 6.93 6.93 6.95 6.95 6.95 6.70 # Checking swapping # possible swapping detected: D 145 D 145 # possible swapping detected: D 146 D 146 # possible swapping detected: E 149 E 149 # possible swapping detected: E 155 E 155 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA S 141 S 141 26.065 0 0.426 0.727 27.653 0.000 0.000 LGA H 142 H 142 24.334 0 0.192 0.898 29.593 0.000 0.000 LGA W 143 W 143 22.479 0 0.100 1.228 31.691 0.000 0.000 LGA V 144 V 144 24.803 0 0.641 1.181 29.405 0.000 0.000 LGA D 145 D 145 20.574 0 0.166 1.072 21.845 0.000 0.000 LGA D 146 D 146 17.686 0 0.615 1.154 18.877 0.000 0.000 LGA D 147 D 147 20.167 0 0.631 0.625 23.438 0.000 0.000 LGA C 148 C 148 17.817 0 0.634 0.711 22.134 0.000 0.000 LGA E 149 E 149 11.776 0 0.660 1.058 13.911 0.000 2.804 LGA E 150 E 150 13.291 0 0.655 0.929 17.074 0.000 0.000 LGA I 151 I 151 10.628 0 0.140 0.241 14.456 1.071 0.595 LGA K 152 K 152 6.408 0 0.070 0.627 7.915 19.167 21.111 LGA V 153 V 153 3.635 0 0.150 0.873 5.311 40.476 41.429 LGA P 154 P 154 3.160 0 0.647 0.665 4.863 48.929 44.898 LGA E 155 E 155 3.581 0 0.524 1.081 9.957 52.143 26.878 LGA C 156 C 156 2.931 0 0.606 0.767 6.127 66.905 53.651 LGA P 157 P 157 2.594 0 0.547 0.791 5.946 57.262 45.578 LGA A 158 A 158 3.800 0 0.629 0.611 6.251 59.762 51.238 LGA G 159 G 159 3.276 0 0.647 0.647 4.830 45.357 45.357 LGA F 160 F 160 2.883 0 0.150 0.563 12.937 65.119 26.970 LGA V 161 V 161 3.133 0 0.082 0.159 7.229 54.167 39.864 LGA R 162 R 162 3.876 0 0.057 1.486 6.169 37.619 44.545 LGA P 163 P 163 10.390 0 0.026 0.073 12.580 1.190 0.884 LGA P 164 P 164 13.162 0 0.659 0.599 17.660 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 24 96 96 100.00 190 190 100.00 386 SUMMARY(RMSD_GDC): 6.683 6.649 7.400 1.423 1.155 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 24 386 4.0 10 3.31 2.655 2.419 0.293 LGA_LOCAL RMSD: 3.312 Number of atoms: 10 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 14.013 Number of assigned atoms: 24 Std_ASGN_ATOMS RMSD: 6.683 Standard rmsd on all 24 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.305251 * X + 0.951777 * Y + -0.030681 * Z + 17.523542 Y_new = -0.622032 * X + 0.174894 * Y + -0.763209 * Z + 49.728539 Z_new = -0.721039 * X + 0.252055 * Y + 0.645422 * Z + 15.476501 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.114590 0.805301 0.372314 [DEG: -63.8613 46.1404 21.3320 ] ZXZ: -0.040178 0.869220 -1.234503 [DEG: -2.3021 49.8026 -70.7318 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS045_1_1-D3 REMARK 2: T0543-D3.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS045_1_1-D3.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 24 386 4.0 10 3.31 2.419 6.68 REMARK ---------------------------------------------------------- MOLECULE T0543TS045_1_1-D3 USER MOD reduce.3.15.091106 removed 282 hydrogens (0 hets) REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PAR REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT N/A ATOM 1323 N SER 141 8.254 60.327 -8.564 1.00 99.90 N ATOM 1324 CA SER 141 8.655 61.273 -9.599 1.00 99.90 C ATOM 1325 C SER 141 7.466 62.092 -10.086 1.00 99.90 C ATOM 1326 O SER 141 7.095 62.029 -11.257 1.00 99.90 O ATOM 1327 CB SER 141 9.299 60.537 -10.758 1.00 99.90 C ATOM 1328 OG SER 141 10.692 60.691 -10.768 1.00 99.90 O ATOM 1331 N HIS 142 6.872 62.860 -9.178 1.00 99.90 N ATOM 1332 CA HIS 142 5.741 63.714 -9.519 1.00 99.90 C ATOM 1333 C HIS 142 6.091 65.188 -9.351 1.00 99.90 C ATOM 1334 O HIS 142 6.157 65.695 -8.233 1.00 99.90 O ATOM 1335 CB HIS 142 4.520 63.364 -8.660 1.00 99.90 C ATOM 1336 CG HIS 142 3.924 62.029 -8.978 1.00 99.90 C ATOM 1337 CD2 HIS 142 2.681 61.681 -9.384 1.00 99.90 C ATOM 1338 ND1 HIS 142 4.642 60.854 -8.888 1.00 99.90 N ATOM 1339 CE1 HIS 142 3.863 59.841 -9.226 1.00 99.90 C ATOM 1340 NE2 HIS 142 2.669 60.315 -9.531 1.00 99.90 N ATOM 1344 N TRP 143 6.317 65.867 -10.470 1.00 99.90 N ATOM 1345 CA TRP 143 6.668 67.282 -10.449 1.00 99.90 C ATOM 1346 C TRP 143 5.423 68.160 -10.496 1.00 99.90 C ATOM 1347 O TRP 143 5.429 69.287 -10.002 1.00 99.90 O ATOM 1348 CB TRP 143 7.592 67.620 -11.620 1.00 99.90 C ATOM 1349 CG TRP 143 8.998 67.137 -11.432 1.00 99.90 C ATOM 1350 CD1 TRP 143 9.686 67.068 -10.256 1.00 99.90 C ATOM 1351 CD2 TRP 143 9.886 66.654 -12.446 1.00 99.90 C ATOM 1352 CE2 TRP 143 11.094 66.310 -11.814 1.00 99.90 C ATOM 1353 CE3 TRP 143 9.775 66.478 -13.831 1.00 99.90 C ATOM 1354 NE1 TRP 143 10.948 66.574 -10.476 1.00 99.90 N ATOM 1355 CZ2 TRP 143 12.182 65.806 -12.512 1.00 99.90 C ATOM 1356 CZ3 TRP 143 10.864 65.971 -14.530 1.00 99.90 C ATOM 1357 CH2 TRP 143 12.032 65.644 -13.890 1.00 99.90 H ATOM 1360 N VAL 144 4.358 67.635 -11.093 1.00 99.90 N ATOM 1361 CA VAL 144 3.120 68.387 -11.248 1.00 99.90 C ATOM 1362 C VAL 144 2.307 68.383 -9.959 1.00 99.90 C ATOM 1363 O VAL 144 2.015 67.325 -9.401 1.00 99.90 O ATOM 1364 CB VAL 144 2.253 67.823 -12.390 1.00 99.90 C ATOM 1365 CG1 VAL 144 0.810 68.282 -12.241 1.00 99.90 C ATOM 1366 CG2 VAL 144 2.810 68.248 -13.739 1.00 99.90 C ATOM 1368 N ASP 145 1.945 69.573 -9.489 1.00 99.90 N ATOM 1369 CA ASP 145 1.251 69.713 -8.216 1.00 99.90 C ATOM 1370 C ASP 145 -0.106 69.024 -8.249 1.00 99.90 C ATOM 1371 O ASP 145 -0.550 68.456 -7.249 1.00 99.90 O ATOM 1372 CB ASP 145 1.082 71.193 -7.858 1.00 99.90 C ATOM 1373 CG ASP 145 2.237 71.784 -7.061 1.00 99.90 C ATOM 1374 OD1 ASP 145 3.028 71.029 -6.550 1.00 99.90 O ATOM 1375 OD2 ASP 145 2.408 72.979 -7.100 1.00 99.90 O ATOM 1377 N ASP 146 -0.762 69.076 -9.402 1.00 99.90 N ATOM 1378 CA ASP 146 -2.044 68.406 -9.585 1.00 99.90 C ATOM 1379 C ASP 146 -1.914 66.902 -9.384 1.00 99.90 C ATOM 1380 O ASP 146 -2.799 66.264 -8.814 1.00 99.90 O ATOM 1381 CB ASP 146 -2.612 68.703 -10.975 1.00 99.90 C ATOM 1382 CG ASP 146 -2.770 70.185 -11.286 1.00 99.90 C ATOM 1383 OD1 ASP 146 -2.290 70.987 -10.523 1.00 99.90 O ATOM 1384 OD2 ASP 146 -3.227 70.500 -12.359 1.00 99.90 O ATOM 1386 N ASP 147 -0.804 66.342 -9.853 1.00 99.90 N ATOM 1387 CA ASP 147 -0.556 64.910 -9.725 1.00 99.90 C ATOM 1388 C ASP 147 -0.286 64.525 -8.277 1.00 99.90 C ATOM 1389 O ASP 147 -0.695 63.457 -7.824 1.00 99.90 O ATOM 1390 CB ASP 147 0.621 64.490 -10.609 1.00 99.90 C ATOM 1391 CG ASP 147 0.386 64.678 -12.102 1.00 99.90 C ATOM 1392 OD1 ASP 147 -0.575 65.321 -12.456 1.00 99.90 O ATOM 1393 OD2 ASP 147 1.246 64.317 -12.869 1.00 99.90 O ATOM 1395 N CYS 148 0.404 65.400 -7.555 1.00 99.90 N ATOM 1396 CA CYS 148 0.666 65.188 -6.137 1.00 99.90 C ATOM 1397 C CYS 148 -0.633 65.069 -5.350 1.00 99.90 C ATOM 1398 O CYS 148 -0.768 64.205 -4.484 1.00 99.90 O ATOM 1399 CB CYS 148 1.424 66.455 -5.740 1.00 99.90 C ATOM 1400 SG CYS 148 2.972 66.716 -6.637 1.00 99.90 S ATOM 1402 N GLU 149 -1.587 65.942 -5.657 1.00 99.90 N ATOM 1403 CA GLU 149 -2.916 65.863 -5.065 1.00 99.90 C ATOM 1404 C GLU 149 -3.678 64.649 -5.579 1.00 99.90 C ATOM 1405 O GLU 149 -4.489 64.062 -4.862 1.00 99.90 O ATOM 1406 CB GLU 149 -3.708 67.141 -5.353 1.00 99.90 C ATOM 1407 CG GLU 149 -2.847 68.364 -5.631 1.00 99.90 C ATOM 1408 CD GLU 149 -3.172 69.486 -4.682 1.00 99.90 C ATOM 1409 OE1 GLU 149 -3.888 69.252 -3.739 1.00 99.90 O ATOM 1410 OE2 GLU 149 -2.613 70.547 -4.837 1.00 99.90 O ATOM 1412 N GLU 150 -3.412 64.276 -6.825 1.00 99.90 N ATOM 1413 CA GLU 150 -4.034 63.098 -7.422 1.00 99.90 C ATOM 1414 C GLU 150 -3.531 61.818 -6.764 1.00 99.90 C ATOM 1415 O GLU 150 -4.210 60.791 -6.785 1.00 99.90 O ATOM 1416 CB GLU 150 -3.767 63.055 -8.926 1.00 99.90 C ATOM 1417 CG GLU 150 -3.795 61.659 -9.531 1.00 99.90 C ATOM 1418 CD GLU 150 -4.913 61.515 -10.524 1.00 99.90 C ATOM 1419 OE1 GLU 150 -4.907 62.221 -11.504 1.00 99.90 O ATOM 1420 OE2 GLU 150 -5.714 60.623 -10.364 1.00 99.90 O ATOM 1422 N ILE 151 -2.338 61.886 -6.183 1.00 99.90 N ATOM 1423 CA ILE 151 -1.787 60.765 -5.431 1.00 99.90 C ATOM 1424 C ILE 151 -2.630 60.462 -4.198 1.00 99.90 C ATOM 1425 O ILE 151 -2.837 61.326 -3.348 1.00 99.90 O ATOM 1426 CB ILE 151 -0.336 61.036 -4.994 1.00 99.90 C ATOM 1427 CG1 ILE 151 0.590 61.071 -6.213 1.00 99.90 C ATOM 1428 CG2 ILE 151 0.126 59.982 -4.001 1.00 99.90 C ATOM 1429 CD1 ILE 151 1.876 61.831 -5.981 1.00 99.90 C ATOM 1431 N LYS 152 -3.114 59.227 -4.109 1.00 99.90 N ATOM 1432 CA LYS 152 -4.036 58.842 -3.047 1.00 99.90 C ATOM 1433 C LYS 152 -3.377 58.956 -1.678 1.00 99.90 C ATOM 1434 O LYS 152 -4.004 59.387 -0.712 1.00 99.90 O ATOM 1435 CB LYS 152 -4.542 57.416 -3.269 1.00 99.90 C ATOM 1436 CG LYS 152 -5.196 57.185 -4.626 1.00 99.90 C ATOM 1437 CD LYS 152 -6.361 56.211 -4.520 1.00 99.90 C ATOM 1438 CE LYS 152 -7.695 56.943 -4.493 1.00 99.90 C ATOM 1439 NZ LYS 152 -8.817 56.039 -4.123 1.00 99.90 N ATOM 1444 N VAL 153 -2.110 58.566 -1.602 1.00 99.90 N ATOM 1445 CA VAL 153 -1.368 58.610 -0.349 1.00 99.90 C ATOM 1446 C VAL 153 -0.831 60.009 -0.075 1.00 99.90 C ATOM 1447 O VAL 153 -0.109 60.578 -0.893 1.00 99.90 O ATOM 1448 CB VAL 153 -0.194 57.612 -0.350 1.00 99.90 C ATOM 1449 CG1 VAL 153 0.820 57.980 0.723 1.00 99.90 C ATOM 1450 CG2 VAL 153 -0.701 56.194 -0.139 1.00 99.90 C ATOM 1452 N PRO 154 -1.188 60.558 1.081 1.00 99.90 N ATOM 1453 CA PRO 154 -0.854 61.939 1.409 1.00 99.90 C ATOM 1454 C PRO 154 0.653 62.161 1.388 1.00 99.90 C ATOM 1455 O PRO 154 1.124 63.251 1.063 1.00 99.90 O ATOM 1456 CB PRO 154 -1.449 62.146 2.805 1.00 99.90 C ATOM 1457 CG PRO 154 -2.580 61.179 2.875 1.00 99.90 C ATOM 1458 CD PRO 154 -2.120 59.969 2.105 1.00 99.90 C ATOM 1459 N GLU 155 1.403 61.123 1.738 1.00 99.90 N ATOM 1460 CA GLU 155 2.833 61.262 1.990 1.00 99.90 C ATOM 1461 C GLU 155 3.641 61.058 0.714 1.00 99.90 C ATOM 1462 O GLU 155 4.740 61.592 0.572 1.00 99.90 O ATOM 1463 CB GLU 155 3.286 60.269 3.063 1.00 99.90 C ATOM 1464 CG GLU 155 2.483 60.330 4.354 1.00 99.90 C ATOM 1465 CD GLU 155 1.548 59.156 4.470 1.00 99.90 C ATOM 1466 OE1 GLU 155 1.141 58.644 3.457 1.00 99.90 O ATOM 1467 OE2 GLU 155 1.334 58.701 5.570 1.00 99.90 O ATOM 1469 N CYS 156 3.086 60.283 -0.211 1.00 99.90 N ATOM 1470 CA CYS 156 3.837 59.825 -1.375 1.00 99.90 C ATOM 1471 C CYS 156 4.487 60.994 -2.105 1.00 99.90 C ATOM 1472 O CYS 156 5.641 60.910 -2.525 1.00 99.90 O ATOM 1473 CB CYS 156 2.754 59.183 -2.243 1.00 99.90 C ATOM 1474 SG CYS 156 2.879 57.384 -2.388 1.00 99.90 S ATOM 1476 N PRO 157 3.739 62.082 -2.252 1.00 99.90 N ATOM 1477 CA PRO 157 4.249 63.277 -2.913 1.00 99.90 C ATOM 1478 C PRO 157 5.643 63.633 -2.411 1.00 99.90 C ATOM 1479 O PRO 157 6.536 63.945 -3.198 1.00 99.90 O ATOM 1480 CB PRO 157 3.221 64.360 -2.574 1.00 99.90 C ATOM 1481 CG PRO 157 1.927 63.626 -2.482 1.00 99.90 C ATOM 1482 CD PRO 157 2.264 62.299 -1.859 1.00 99.90 C ATOM 1483 N ALA 158 5.823 63.583 -1.096 1.00 99.90 N ATOM 1484 CA ALA 158 7.113 63.887 -0.486 1.00 99.90 C ATOM 1485 C ALA 158 8.102 62.749 -0.694 1.00 99.90 C ATOM 1486 O ALA 158 9.277 62.979 -0.981 1.00 99.90 O ATOM 1487 CB ALA 158 6.940 64.181 0.997 1.00 99.90 C ATOM 1489 N GLY 159 7.621 61.519 -0.544 1.00 99.90 N ATOM 1490 CA GLY 159 8.460 60.340 -0.734 1.00 99.90 C ATOM 1491 C GLY 159 7.937 59.158 0.072 1.00 99.90 C ATOM 1492 O GLY 159 6.895 59.249 0.722 1.00 99.90 O ATOM 1494 N PHE 160 8.665 58.048 0.022 1.00 99.90 N ATOM 1495 CA PHE 160 8.297 56.857 0.780 1.00 99.90 C ATOM 1496 C PHE 160 8.376 57.111 2.278 1.00 99.90 C ATOM 1497 O PHE 160 9.308 57.755 2.761 1.00 99.90 O ATOM 1498 CB PHE 160 9.198 55.681 0.397 1.00 99.90 C ATOM 1499 CG PHE 160 8.444 54.428 0.050 1.00 99.90 C ATOM 1500 CD1 PHE 160 7.695 54.353 -1.115 1.00 99.90 C ATOM 1501 CD2 PHE 160 8.483 53.324 0.887 1.00 99.90 C ATOM 1502 CE1 PHE 160 7.001 53.201 -1.435 1.00 99.90 C ATOM 1503 CE2 PHE 160 7.793 52.170 0.569 1.00 99.90 C ATOM 1504 CZ PHE 160 7.051 52.109 -0.593 1.00 99.90 C ATOM 1506 N VAL 161 7.392 56.602 3.014 1.00 99.90 N ATOM 1507 CA VAL 161 7.310 56.835 4.450 1.00 99.90 C ATOM 1508 C VAL 161 8.314 55.974 5.206 1.00 99.90 C ATOM 1509 O VAL 161 8.454 56.092 6.424 1.00 99.90 O ATOM 1510 CB VAL 161 5.896 56.548 4.989 1.00 99.90 C ATOM 1511 CG1 VAL 161 4.843 57.028 4.001 1.00 99.90 C ATOM 1512 CG2 VAL 161 5.722 55.063 5.270 1.00 99.90 C ATOM 1514 N ARG 162 9.012 55.110 4.478 1.00 99.90 N ATOM 1515 CA ARG 162 10.098 54.325 5.051 1.00 99.90 C ATOM 1516 C ARG 162 11.439 54.707 4.438 1.00 99.90 C ATOM 1517 O ARG 162 11.523 55.017 3.249 1.00 99.90 O ATOM 1518 CB ARG 162 9.843 52.830 4.946 1.00 99.90 C ATOM 1519 CG ARG 162 9.045 52.234 6.095 1.00 99.90 C ATOM 1520 CD ARG 162 9.869 51.530 7.112 1.00 99.90 C ATOM 1521 NE ARG 162 9.103 50.810 8.116 1.00 99.90 N ATOM 1522 CZ ARG 162 9.018 51.166 9.414 1.00 99.90 C ATOM 1523 NH1 ARG 162 9.539 52.293 9.843 1.00 99.90 H ATOM 1524 NH2 ARG 162 8.419 50.335 10.250 1.00 99.90 H ATOM 1531 N PRO 163 12.486 54.685 5.254 1.00 99.90 N ATOM 1532 CA PRO 163 13.826 55.030 4.793 1.00 99.90 C ATOM 1533 C PRO 163 14.192 54.253 3.535 1.00 99.90 C ATOM 1534 O PRO 163 14.189 53.022 3.532 1.00 99.90 O ATOM 1535 CB PRO 163 14.733 54.674 5.976 1.00 99.90 C ATOM 1536 CG PRO 163 13.861 54.838 7.174 1.00 99.90 C ATOM 1537 CD PRO 163 12.491 54.396 6.734 1.00 99.90 C ATOM 1538 N PRO 164 14.508 54.979 2.468 1.00 99.90 N ATOM 1539 CA PRO 164 14.826 54.361 1.188 1.00 99.90 C ATOM 1540 C PRO 164 16.137 53.587 1.261 1.00 99.90 C ATOM 1541 O PRO 164 16.502 52.877 0.323 1.00 99.90 O ATOM 1542 CB PRO 164 14.907 55.539 0.211 1.00 99.90 C ATOM 1543 CG PRO 164 15.203 56.716 1.075 1.00 99.90 C ATOM 1544 CD PRO 164 14.475 56.457 2.367 1.00 99.90 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 190 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 87.55 45.7 46 6.0 767 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 306 ARMSMC SURFACE . . . . . . . . 96.72 40.5 37 10.7 347 ARMSMC BURIED . . . . . . . . 26.78 66.7 9 2.1 420 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.94 50.0 22 6.6 334 ARMSSC1 RELIABLE SIDE CHAINS . 73.59 52.6 19 6.1 310 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 132 ARMSSC1 SURFACE . . . . . . . . 77.84 52.9 17 10.7 159 ARMSSC1 BURIED . . . . . . . . 58.76 40.0 5 2.9 175 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.73 31.2 16 6.5 247 ARMSSC2 RELIABLE SIDE CHAINS . 56.68 33.3 15 8.2 183 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 100 ARMSSC2 SURFACE . . . . . . . . 64.12 18.2 11 9.3 118 ARMSSC2 BURIED . . . . . . . . 59.53 60.0 5 3.9 129 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 97.01 40.0 5 7.0 71 ARMSSC3 RELIABLE SIDE CHAINS . 97.01 40.0 5 8.2 61 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 32 ARMSSC3 SURFACE . . . . . . . . 97.01 40.0 5 11.4 44 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 118.25 50.0 2 6.2 32 ARMSSC4 RELIABLE SIDE CHAINS . 118.25 50.0 2 6.2 32 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 15 ARMSSC4 SURFACE . . . . . . . . 118.25 50.0 2 9.1 22 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 10 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 6.68 (Number of atoms: 24) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 6.68 24 6.2 386 CRMSCA CRN = ALL/NP . . . . . 0.2784 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 153 CRMSCA SURFACE . . . . . . . . 6.66 19 10.8 176 CRMSCA BURIED . . . . . . . . 6.76 5 2.4 210 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 6.84 119 6.3 1902 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 758 CRMSMC SURFACE . . . . . . . . 6.68 94 10.8 872 CRMSMC BURIED . . . . . . . . 7.40 25 2.4 1030 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.35 94 5.9 1592 CRMSSC RELIABLE SIDE CHAINS . 8.06 84 6.2 1352 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 633 CRMSSC SURFACE . . . . . . . . 8.51 67 8.8 764 CRMSSC BURIED . . . . . . . . 7.96 27 3.3 828 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.54 190 6.1 3136 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 1245 CRMSALL SURFACE . . . . . . . . 7.47 143 9.7 1468 CRMSALL BURIED . . . . . . . . 7.77 47 2.8 1668 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.863 0.887 0.894 24 6.2 386 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 153 ERRCA SURFACE . . . . . . . . 93.872 0.887 0.894 19 10.8 176 ERRCA BURIED . . . . . . . . 93.829 0.887 0.894 5 2.4 210 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.767 0.886 0.893 119 6.3 1902 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 758 ERRMC SURFACE . . . . . . . . 93.860 0.887 0.894 94 10.8 872 ERRMC BURIED . . . . . . . . 93.416 0.880 0.888 25 2.4 1030 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 92.051 0.856 0.866 94 5.9 1592 ERRSC RELIABLE SIDE CHAINS . 92.255 0.859 0.869 84 6.2 1352 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 633 ERRSC SURFACE . . . . . . . . 91.890 0.853 0.864 67 8.8 764 ERRSC BURIED . . . . . . . . 92.451 0.862 0.872 27 3.3 828 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 93.013 0.873 0.881 190 6.1 3136 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 1245 ERRALL SURFACE . . . . . . . . 93.077 0.874 0.882 143 9.7 1468 ERRALL BURIED . . . . . . . . 92.816 0.869 0.878 47 2.8 1668 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 3 14 20 24 386 DISTCA CA (P) 0.00 0.00 0.78 3.63 5.18 386 DISTCA CA (RMS) 0.00 0.00 2.54 4.12 5.36 DISTCA ALL (N) 1 2 14 69 157 190 3136 DISTALL ALL (P) 0.03 0.06 0.45 2.20 5.01 3136 DISTALL ALL (RMS) 0.76 1.21 2.44 3.98 6.20 DISTALL END of the results output