####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS045_1_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS045_1_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 23 69 - 91 4.92 13.31 LCS_AVERAGE: 52.19 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 76 - 87 1.85 14.59 LCS_AVERAGE: 21.06 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 78 - 84 0.31 15.13 LONGEST_CONTINUOUS_SEGMENT: 7 79 - 85 0.94 15.10 LCS_AVERAGE: 12.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 3 4 17 0 3 3 3 3 4 8 10 11 12 13 14 18 20 21 23 27 28 28 31 LCS_GDT S 57 S 57 3 6 17 0 3 3 5 5 6 8 10 11 12 13 15 18 20 21 23 27 28 28 31 LCS_GDT C 58 C 58 5 6 17 3 4 5 5 5 7 8 10 11 15 17 17 18 20 21 23 27 28 28 31 LCS_GDT K 59 K 59 5 6 17 3 4 5 5 5 7 8 10 14 15 17 17 19 22 23 23 27 28 28 31 LCS_GDT G 60 G 60 5 6 17 3 4 5 5 5 8 12 13 14 15 17 17 19 22 23 23 27 28 28 31 LCS_GDT R 61 R 61 5 6 17 3 4 5 5 6 8 12 12 14 15 17 17 19 22 23 23 27 28 28 31 LCS_GDT C 62 C 62 5 6 17 3 4 5 6 7 8 12 13 14 15 17 17 18 22 23 23 27 28 28 30 LCS_GDT F 63 F 63 5 6 17 3 4 5 6 7 9 12 13 14 15 17 19 20 22 23 23 27 28 28 30 LCS_GDT E 64 E 64 5 6 17 3 4 5 7 8 11 12 14 16 16 17 19 20 22 23 23 27 28 28 31 LCS_GDT L 65 L 65 5 6 17 3 4 5 6 7 8 12 13 14 15 17 17 18 20 21 22 25 27 28 31 LCS_GDT Q 66 Q 66 5 5 17 1 4 5 6 7 8 9 13 14 15 17 17 18 20 21 21 24 27 28 31 LCS_GDT E 67 E 67 3 5 17 1 3 3 4 6 8 12 13 14 15 17 17 18 20 21 22 25 27 28 31 LCS_GDT V 68 V 68 3 5 22 0 3 3 4 5 8 12 13 14 15 17 18 18 20 21 24 25 27 28 31 LCS_GDT G 69 G 69 3 5 23 0 3 3 6 8 9 12 13 14 15 18 19 21 22 23 24 25 27 28 30 LCS_GDT P 70 P 70 3 5 23 2 3 3 5 8 9 11 13 14 15 18 19 21 22 23 24 25 27 28 31 LCS_GDT P 71 P 71 3 5 23 3 3 4 4 6 8 12 13 14 15 18 19 21 22 23 24 25 27 28 31 LCS_GDT D 72 D 72 3 5 23 3 3 4 4 6 8 8 12 14 15 16 19 21 22 23 24 25 27 28 31 LCS_GDT C 73 C 73 3 5 23 3 3 4 4 8 8 11 13 13 15 18 19 21 22 23 24 25 27 28 30 LCS_GDT R 74 R 74 3 5 23 0 3 3 3 5 8 11 13 13 15 18 19 21 22 23 24 25 27 28 31 LCS_GDT C 75 C 75 3 10 23 0 3 3 5 8 9 11 13 13 15 18 19 21 22 23 24 25 26 27 29 LCS_GDT D 76 D 76 4 12 23 4 4 9 10 10 11 12 13 14 15 18 19 21 22 23 24 27 28 28 31 LCS_GDT N 77 N 77 4 12 23 4 4 9 10 10 11 12 13 14 15 18 19 21 22 23 24 27 28 28 30 LCS_GDT L 78 L 78 7 12 23 5 8 9 10 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 31 LCS_GDT C 79 C 79 7 12 23 6 8 9 10 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 31 LCS_GDT K 80 K 80 7 12 23 6 8 9 10 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 31 LCS_GDT S 81 S 81 7 12 23 6 8 9 10 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 30 LCS_GDT Y 82 Y 82 7 12 23 6 8 9 10 10 11 12 13 16 16 18 19 21 22 23 24 25 28 28 30 LCS_GDT S 83 S 83 7 12 23 6 8 9 10 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 31 LCS_GDT S 84 S 84 7 12 23 6 8 9 10 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 31 LCS_GDT C 85 C 85 7 12 23 3 4 6 8 9 11 12 14 16 16 17 19 21 22 23 24 27 28 28 31 LCS_GDT C 86 C 86 4 12 23 4 8 8 10 10 11 12 13 14 15 17 19 21 22 23 23 25 27 28 31 LCS_GDT H 87 H 87 4 12 23 4 4 7 9 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 30 LCS_GDT D 88 D 88 6 10 23 4 6 8 9 10 11 11 14 16 16 18 19 21 22 23 24 27 28 28 31 LCS_GDT F 89 F 89 6 10 23 4 5 8 9 10 11 11 14 16 16 18 19 21 22 23 24 27 28 28 31 LCS_GDT D 90 D 90 6 10 23 4 5 8 9 10 11 11 14 16 16 17 19 20 22 23 24 27 28 28 31 LCS_GDT E 91 E 91 6 10 23 4 5 8 9 10 11 11 14 16 16 17 19 20 22 23 24 27 28 28 31 LCS_GDT L 92 L 92 6 10 20 3 6 8 9 10 11 11 14 16 16 17 19 20 22 23 24 27 28 28 31 LCS_GDT C 93 C 93 6 10 20 3 6 8 9 10 10 11 14 16 16 17 19 20 22 23 24 27 28 28 31 LCS_GDT L 94 L 94 5 10 20 3 6 8 9 10 10 10 12 14 15 17 19 20 22 23 23 27 28 28 31 LCS_GDT K 95 K 95 5 10 20 3 6 8 9 10 11 11 12 14 16 17 19 20 22 23 23 27 28 28 31 LCS_AVERAGE LCS_A: 28.50 ( 12.25 21.06 52.19 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 8 9 10 10 11 12 14 16 16 18 19 21 22 23 24 27 28 28 31 GDT PERCENT_AT 15.00 20.00 22.50 25.00 25.00 27.50 30.00 35.00 40.00 40.00 45.00 47.50 52.50 55.00 57.50 60.00 67.50 70.00 70.00 77.50 GDT RMS_LOCAL 0.17 0.41 1.10 1.18 1.18 1.45 1.85 3.05 3.30 3.30 4.02 4.02 4.48 4.67 4.84 5.39 5.93 6.06 6.06 7.84 GDT RMS_ALL_AT 15.23 14.83 16.13 15.43 15.43 15.36 14.59 10.87 11.20 11.20 13.64 13.82 13.88 11.12 11.10 12.11 10.70 10.68 10.68 8.77 # Checking swapping # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 14.905 0 0.043 0.043 16.134 0.000 0.000 LGA S 57 S 57 15.808 0 0.633 0.832 19.917 0.000 0.000 LGA C 58 C 58 14.121 0 0.585 0.870 15.293 0.000 0.000 LGA K 59 K 59 12.580 0 0.617 0.781 13.029 0.119 0.053 LGA G 60 G 60 10.745 0 0.206 0.206 11.933 0.357 0.357 LGA R 61 R 61 10.892 0 0.194 1.598 14.914 0.119 0.043 LGA C 62 C 62 11.714 0 0.486 0.478 16.501 0.000 0.000 LGA F 63 F 63 7.761 0 0.525 0.982 11.355 12.143 4.675 LGA E 64 E 64 3.114 0 0.065 0.644 6.333 37.500 36.878 LGA L 65 L 65 8.368 0 0.660 0.807 12.364 7.262 3.690 LGA Q 66 Q 66 12.258 0 0.669 1.464 16.012 0.000 0.000 LGA E 67 E 67 14.507 0 0.586 1.163 16.892 0.000 0.000 LGA V 68 V 68 14.110 0 0.589 0.743 16.828 0.000 0.000 LGA G 69 G 69 19.491 0 0.553 0.553 19.612 0.000 0.000 LGA P 70 P 70 18.998 0 0.095 0.227 22.459 0.000 0.000 LGA P 71 P 71 22.208 0 0.277 0.583 23.896 0.000 0.000 LGA D 72 D 72 19.770 3 0.539 0.574 20.075 0.000 0.000 LGA C 73 C 73 16.825 0 0.569 0.559 18.759 0.000 0.000 LGA R 74 R 74 15.686 0 0.602 1.164 21.673 0.000 0.000 LGA C 75 C 75 12.852 0 0.592 0.683 16.215 0.119 0.079 LGA D 76 D 76 10.033 0 0.675 1.159 12.801 3.690 1.845 LGA N 77 N 77 7.379 0 0.078 0.680 10.839 18.095 10.000 LGA L 78 L 78 0.894 0 0.227 0.566 5.466 75.952 60.238 LGA C 79 C 79 1.988 0 0.036 0.766 4.274 81.667 66.825 LGA K 80 K 80 3.685 0 0.011 0.936 10.027 42.857 25.291 LGA S 81 S 81 5.388 0 0.080 0.405 7.724 22.976 23.413 LGA Y 82 Y 82 5.840 0 0.019 0.418 9.215 21.905 13.810 LGA S 83 S 83 4.657 0 0.180 0.460 7.665 35.833 27.302 LGA S 84 S 84 3.144 0 0.582 0.822 5.965 50.357 41.508 LGA C 85 C 85 3.416 0 0.019 0.183 6.098 50.357 42.619 LGA C 86 C 86 7.112 0 0.636 1.044 12.268 22.262 15.079 LGA H 87 H 87 2.994 0 0.039 1.379 8.520 58.571 36.095 LGA D 88 D 88 3.008 0 0.287 1.113 6.182 61.071 40.714 LGA F 89 F 89 1.824 0 0.176 1.271 3.707 77.143 64.589 LGA D 90 D 90 2.771 0 0.042 1.149 6.600 57.976 43.274 LGA E 91 E 91 3.745 0 0.129 0.727 9.391 46.905 27.302 LGA L 92 L 92 2.188 0 0.128 0.309 7.128 82.381 52.798 LGA C 93 C 93 3.316 0 0.031 0.787 8.007 46.071 35.873 LGA L 94 L 94 7.583 0 0.411 1.320 12.627 10.833 5.595 LGA K 95 K 95 7.533 0 0.663 0.994 9.303 6.667 7.037 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 8.726 8.668 9.256 23.280 17.175 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 14 3.05 35.000 31.472 0.445 LGA_LOCAL RMSD: 3.048 Number of atoms: 14 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 10.867 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 8.726 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.742627 * X + 0.404046 * Y + 0.534090 * Z + 54.236462 Y_new = -0.617075 * X + -0.102933 * Y + -0.780143 * Z + 67.407539 Z_new = -0.260239 * X + -0.908929 * Y + 0.325767 * Z + 18.242825 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.448271 0.263269 -1.226651 [DEG: -140.2756 15.0842 -70.2819 ] ZXZ: 0.600319 1.238973 -2.862739 [DEG: 34.3958 70.9879 -164.0229 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS045_1_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS045_1_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 14 3.05 31.472 8.73 REMARK ---------------------------------------------------------- MOLECULE T0543TS045_1_1-D1 USER MOD reduce.3.15.091106 removed 282 hydrogens (0 hets) REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PAR REMARK PFRMAT TS REMARK TARGET T0543 REMARK PARENT N/A ATOM 516 N GLY 56 30.564 57.306 21.928 1.00 99.90 N ATOM 517 CA GLY 56 30.267 58.682 21.548 1.00 99.90 C ATOM 518 C GLY 56 31.538 59.515 21.458 1.00 99.90 C ATOM 519 O GLY 56 31.509 60.732 21.637 1.00 99.90 O ATOM 521 N SER 57 32.656 58.852 21.178 1.00 99.90 N ATOM 522 CA SER 57 33.937 59.532 21.045 1.00 99.90 C ATOM 523 C SER 57 33.926 60.504 19.872 1.00 99.90 C ATOM 524 O SER 57 34.648 61.501 19.873 1.00 99.90 O ATOM 525 CB SER 57 35.052 58.518 20.880 1.00 99.90 C ATOM 526 OG SER 57 34.731 57.531 19.939 1.00 99.90 O ATOM 529 N CYS 58 33.102 60.208 18.873 1.00 99.90 N ATOM 530 CA CYS 58 32.995 61.054 17.690 1.00 99.90 C ATOM 531 C CYS 58 32.318 62.378 18.019 1.00 99.90 C ATOM 532 O CYS 58 31.230 62.403 18.594 1.00 99.90 O ATOM 533 CB CYS 58 32.120 60.219 16.755 1.00 99.90 C ATOM 534 SG CYS 58 31.234 61.178 15.504 1.00 99.90 S ATOM 536 N LYS 59 32.967 63.477 17.652 1.00 99.90 N ATOM 537 CA LYS 59 32.425 64.808 17.899 1.00 99.90 C ATOM 538 C LYS 59 30.982 64.910 17.426 1.00 99.90 C ATOM 539 O LYS 59 30.155 65.563 18.061 1.00 99.90 O ATOM 540 CB LYS 59 33.282 65.872 17.213 1.00 99.90 C ATOM 541 CG LYS 59 32.487 67.007 16.582 1.00 99.90 C ATOM 542 CD LYS 59 33.077 67.416 15.239 1.00 99.90 C ATOM 543 CE LYS 59 32.080 68.218 14.417 1.00 99.90 C ATOM 544 NZ LYS 59 32.479 68.302 12.986 1.00 99.90 N ATOM 549 N GLY 60 30.685 64.262 16.304 1.00 99.90 N ATOM 550 CA GLY 60 29.354 64.323 15.713 1.00 99.90 C ATOM 551 C GLY 60 28.371 63.446 16.478 1.00 99.90 C ATOM 552 O GLY 60 27.179 63.745 16.543 1.00 99.90 O ATOM 554 N ARG 61 28.878 62.363 17.056 1.00 99.90 N ATOM 555 CA ARG 61 28.040 61.422 17.791 1.00 99.90 C ATOM 556 C ARG 61 27.478 62.059 19.056 1.00 99.90 C ATOM 557 O ARG 61 26.379 61.719 19.497 1.00 99.90 O ATOM 558 CB ARG 61 28.768 60.121 18.097 1.00 99.90 C ATOM 559 CG ARG 61 28.318 58.927 17.270 1.00 99.90 C ATOM 560 CD ARG 61 29.283 58.511 16.221 1.00 99.90 C ATOM 561 NE ARG 61 28.709 57.691 15.166 1.00 99.90 N ATOM 562 CZ ARG 61 29.390 56.767 14.458 1.00 99.90 C ATOM 563 NH1 ARG 61 30.699 56.674 14.550 1.00 99.90 H ATOM 564 NH2 ARG 61 28.709 55.974 13.650 1.00 99.90 H ATOM 571 N CYS 62 28.238 62.981 19.636 1.00 99.90 N ATOM 572 CA CYS 62 27.852 63.611 20.892 1.00 99.90 C ATOM 573 C CYS 62 27.630 65.108 20.711 1.00 99.90 C ATOM 574 O CYS 62 27.778 65.886 21.655 1.00 99.90 O ATOM 575 CB CYS 62 29.064 63.352 21.787 1.00 99.90 C ATOM 576 SG CYS 62 29.168 61.666 22.435 1.00 99.90 S ATOM 578 N PHE 63 27.276 65.505 19.494 1.00 99.90 N ATOM 579 CA PHE 63 27.064 66.914 19.179 1.00 99.90 C ATOM 580 C PHE 63 25.926 67.090 18.182 1.00 99.90 C ATOM 581 O PHE 63 25.854 66.385 17.175 1.00 99.90 O ATOM 582 CB PHE 63 28.348 67.537 18.629 1.00 99.90 C ATOM 583 CG PHE 63 28.303 69.036 18.538 1.00 99.90 C ATOM 584 CD1 PHE 63 27.281 69.752 19.143 1.00 99.90 C ATOM 585 CD2 PHE 63 29.283 69.733 17.847 1.00 99.90 C ATOM 586 CE1 PHE 63 27.239 71.130 19.060 1.00 99.90 C ATOM 587 CE2 PHE 63 29.245 71.111 17.763 1.00 99.90 C ATOM 588 CZ PHE 63 28.222 71.811 18.370 1.00 99.90 C ATOM 590 N GLU 64 25.038 68.037 18.467 1.00 99.90 N ATOM 591 CA GLU 64 23.961 68.378 17.547 1.00 99.90 C ATOM 592 C GLU 64 23.538 69.833 17.708 1.00 99.90 C ATOM 593 O GLU 64 23.350 70.314 18.825 1.00 99.90 O ATOM 594 CB GLU 64 22.759 67.455 17.762 1.00 99.90 C ATOM 595 CG GLU 64 21.685 67.560 16.687 1.00 99.90 C ATOM 596 CD GLU 64 21.343 66.208 16.124 1.00 99.90 C ATOM 597 OE1 GLU 64 20.558 65.516 16.727 1.00 99.90 O ATOM 598 OE2 GLU 64 21.775 65.914 15.035 1.00 99.90 O ATOM 600 N LEU 65 23.391 70.529 16.586 1.00 99.90 N ATOM 601 CA LEU 65 22.979 71.928 16.600 1.00 99.90 C ATOM 602 C LEU 65 21.484 72.059 16.853 1.00 99.90 C ATOM 603 O LEU 65 20.708 71.158 16.532 1.00 99.90 O ATOM 604 CB LEU 65 23.358 72.605 15.276 1.00 99.90 C ATOM 605 CG LEU 65 24.797 72.358 14.805 1.00 99.90 C ATOM 606 CD1 LEU 65 25.271 73.522 13.945 1.00 99.90 C ATOM 607 CD2 LEU 65 25.705 72.176 16.014 1.00 99.90 C ATOM 609 N GLN 66 21.083 73.186 17.432 1.00 99.90 N ATOM 610 CA GLN 66 19.690 73.403 17.804 1.00 99.90 C ATOM 611 C GLN 66 18.810 73.576 16.572 1.00 99.90 C ATOM 612 O GLN 66 17.588 73.469 16.651 1.00 99.90 O ATOM 613 CB GLN 66 19.562 74.633 18.707 1.00 99.90 C ATOM 614 CG GLN 66 20.016 74.405 20.139 1.00 99.90 C ATOM 615 CD GLN 66 19.496 73.100 20.710 1.00 99.90 C ATOM 616 NE2 GLN 66 20.401 72.165 20.971 1.00 99.90 N ATOM 617 OE1 GLN 66 18.290 72.933 20.918 1.00 99.90 O ATOM 621 N GLU 67 19.443 73.844 15.434 1.00 99.90 N ATOM 622 CA GLU 67 18.722 73.992 14.175 1.00 99.90 C ATOM 623 C GLU 67 18.255 72.642 13.646 1.00 99.90 C ATOM 624 O GLU 67 17.444 72.574 12.723 1.00 99.90 O ATOM 625 CB GLU 67 19.601 74.689 13.135 1.00 99.90 C ATOM 626 CG GLU 67 20.906 73.968 12.830 1.00 99.90 C ATOM 627 CD GLU 67 21.464 74.388 11.499 1.00 99.90 C ATOM 628 OE1 GLU 67 20.823 75.155 10.822 1.00 99.90 O ATOM 629 OE2 GLU 67 22.582 74.032 11.206 1.00 99.90 O ATOM 631 N VAL 68 18.771 71.570 14.237 1.00 99.90 N ATOM 632 CA VAL 68 18.376 70.219 13.853 1.00 99.90 C ATOM 633 C VAL 68 16.910 69.962 14.177 1.00 99.90 C ATOM 634 O VAL 68 16.188 69.353 13.387 1.00 99.90 O ATOM 635 CB VAL 68 19.240 69.156 14.557 1.00 99.90 C ATOM 636 CG1 VAL 68 18.534 67.810 14.556 1.00 99.90 C ATOM 637 CG2 VAL 68 20.601 69.044 13.884 1.00 99.90 C ATOM 639 N GLY 69 16.475 70.430 15.341 1.00 99.90 N ATOM 640 CA GLY 69 15.098 70.231 15.781 1.00 99.90 C ATOM 641 C GLY 69 14.880 68.809 16.281 1.00 99.90 C ATOM 642 O GLY 69 14.018 68.090 15.777 1.00 99.90 O ATOM 644 N PRO 70 15.665 68.409 17.275 1.00 99.90 N ATOM 645 CA PRO 70 15.529 67.087 17.876 1.00 99.90 C ATOM 646 C PRO 70 14.229 66.971 18.660 1.00 99.90 C ATOM 647 O PRO 70 13.542 67.964 18.893 1.00 99.90 O ATOM 648 CB PRO 70 16.760 66.957 18.778 1.00 99.90 C ATOM 649 CG PRO 70 17.115 68.362 19.127 1.00 99.90 C ATOM 650 CD PRO 70 16.793 69.172 17.900 1.00 99.90 C ATOM 651 N PRO 71 13.896 65.749 19.065 1.00 99.90 N ATOM 652 CA PRO 71 12.700 65.506 19.862 1.00 99.90 C ATOM 653 C PRO 71 12.691 66.366 21.120 1.00 99.90 C ATOM 654 O PRO 71 11.633 66.767 21.603 1.00 99.90 O ATOM 655 CB PRO 71 12.764 64.009 20.187 1.00 99.90 C ATOM 656 CG PRO 71 13.589 63.427 19.090 1.00 99.90 C ATOM 657 CD PRO 71 14.617 64.477 18.764 1.00 99.90 C ATOM 658 N ASP 72 13.880 66.644 21.648 1.00 99.90 N ATOM 659 CA ASP 72 14.012 67.442 22.861 1.00 99.90 C ATOM 660 C ASP 72 14.611 68.809 22.559 1.00 99.90 C ATOM 661 O ASP 72 15.504 69.276 23.266 1.00 99.90 O ATOM 662 CB ASP 72 14.867 66.709 23.896 1.00 99.90 C ATOM 663 CG ASP 72 14.133 65.614 24.658 1.00 99.90 C ATOM 664 OD1 ASP 72 12.960 65.771 24.903 1.00 99.90 O ATOM 665 OD2 ASP 72 14.704 64.567 24.851 1.00 99.90 O ATOM 667 N CYS 73 14.116 69.447 21.503 1.00 99.90 N ATOM 668 CA CYS 73 14.593 70.769 21.114 1.00 99.90 C ATOM 669 C CYS 73 14.016 71.851 22.017 1.00 99.90 C ATOM 670 O CYS 73 14.292 73.035 21.836 1.00 99.90 O ATOM 671 CB CYS 73 14.058 70.915 19.690 1.00 99.90 C ATOM 672 SG CYS 73 13.329 72.530 19.324 1.00 99.90 S ATOM 674 N ARG 74 13.213 71.435 22.991 1.00 99.90 N ATOM 675 CA ARG 74 12.610 72.366 23.937 1.00 99.90 C ATOM 676 C ARG 74 12.880 71.942 25.375 1.00 99.90 C ATOM 677 O ARG 74 12.171 72.349 26.295 1.00 99.90 O ATOM 678 CB ARG 74 11.123 72.561 23.684 1.00 99.90 C ATOM 679 CG ARG 74 10.782 73.649 22.678 1.00 99.90 C ATOM 680 CD ARG 74 9.591 74.460 23.034 1.00 99.90 C ATOM 681 NE ARG 74 8.400 74.157 22.259 1.00 99.90 N ATOM 682 CZ ARG 74 7.400 75.027 22.016 1.00 99.90 C ATOM 683 NH1 ARG 74 7.482 76.279 22.411 1.00 99.90 H ATOM 684 NH2 ARG 74 6.324 74.585 21.392 1.00 99.90 H ATOM 691 N CYS 75 13.910 71.124 25.562 1.00 99.90 N ATOM 692 CA CYS 75 14.305 70.678 26.893 1.00 99.90 C ATOM 693 C CYS 75 15.789 70.913 27.135 1.00 99.90 C ATOM 694 O CYS 75 16.578 70.988 26.192 1.00 99.90 O ATOM 695 CB CYS 75 13.994 69.182 26.856 1.00 99.90 C ATOM 696 SG CYS 75 12.939 68.669 25.479 1.00 99.90 S ATOM 698 N ASP 76 16.167 71.027 28.404 1.00 99.90 N ATOM 699 CA ASP 76 17.567 71.191 28.776 1.00 99.90 C ATOM 700 C ASP 76 18.196 69.857 29.157 1.00 99.90 C ATOM 701 O ASP 76 19.377 69.791 29.501 1.00 99.90 O ATOM 702 CB ASP 76 17.703 72.185 29.931 1.00 99.90 C ATOM 703 CG ASP 76 17.338 71.617 31.297 1.00 99.90 C ATOM 704 OD1 ASP 76 16.244 71.125 31.440 1.00 99.90 O ATOM 705 OD2 ASP 76 18.203 71.538 32.134 1.00 99.90 O ATOM 707 N ASN 77 17.401 68.794 29.094 1.00 99.90 N ATOM 708 CA ASN 77 17.889 67.452 29.394 1.00 99.90 C ATOM 709 C ASN 77 18.815 66.947 28.295 1.00 99.90 C ATOM 710 O ASN 77 19.841 66.324 28.573 1.00 99.90 O ATOM 711 CB ASN 77 16.743 66.480 29.605 1.00 99.90 C ATOM 712 CG ASN 77 15.533 67.100 30.246 1.00 99.90 C ATOM 713 ND2 ASN 77 15.241 66.660 31.444 1.00 99.90 N ATOM 714 OD1 ASN 77 14.914 68.017 29.694 1.00 99.90 O ATOM 718 N LEU 78 18.446 67.214 27.048 1.00 99.90 N ATOM 719 CA LEU 78 19.267 66.827 25.905 1.00 99.90 C ATOM 720 C LEU 78 20.552 67.645 25.849 1.00 99.90 C ATOM 721 O LEU 78 21.611 67.129 25.490 1.00 99.90 O ATOM 722 CB LEU 78 18.475 66.990 24.604 1.00 99.90 C ATOM 723 CG LEU 78 19.091 66.308 23.375 1.00 99.90 C ATOM 724 CD1 LEU 78 19.721 64.981 23.776 1.00 99.90 C ATOM 725 CD2 LEU 78 18.017 66.099 22.317 1.00 99.90 C ATOM 727 N CYS 79 20.452 68.921 26.207 1.00 99.90 N ATOM 728 CA CYS 79 21.611 69.804 26.222 1.00 99.90 C ATOM 729 C CYS 79 22.641 69.347 27.246 1.00 99.90 C ATOM 730 O CYS 79 23.842 69.350 26.978 1.00 99.90 O ATOM 731 CB CYS 79 21.006 71.148 26.630 1.00 99.90 C ATOM 732 SG CYS 79 19.679 71.732 25.548 1.00 99.90 S ATOM 734 N LYS 80 22.163 68.952 28.421 1.00 99.90 N ATOM 735 CA LYS 80 23.035 68.425 29.465 1.00 99.90 C ATOM 736 C LYS 80 23.569 67.048 29.092 1.00 99.90 C ATOM 737 O LYS 80 24.743 66.747 29.309 1.00 99.90 O ATOM 738 CB LYS 80 22.291 68.355 30.800 1.00 99.90 C ATOM 739 CG LYS 80 21.877 69.710 31.360 1.00 99.90 C ATOM 740 CD LYS 80 20.651 69.589 32.253 1.00 99.90 C ATOM 741 CE LYS 80 21.023 69.715 33.722 1.00 99.90 C ATOM 742 NZ LYS 80 19.843 69.535 34.612 1.00 99.90 N ATOM 747 N SER 81 22.702 66.214 28.530 1.00 99.90 N ATOM 748 CA SER 81 23.102 64.893 28.059 1.00 99.90 C ATOM 749 C SER 81 24.158 64.996 26.965 1.00 99.90 C ATOM 750 O SER 81 24.963 64.084 26.779 1.00 99.90 O ATOM 751 CB SER 81 21.892 64.130 27.555 1.00 99.90 C ATOM 752 OG SER 81 21.698 62.932 28.256 1.00 99.90 O ATOM 755 N TYR 82 24.149 66.110 26.244 1.00 99.90 N ATOM 756 CA TYR 82 25.133 66.354 25.196 1.00 99.90 C ATOM 757 C TYR 82 26.352 67.084 25.744 1.00 99.90 C ATOM 758 O TYR 82 27.341 67.279 25.037 1.00 99.90 O ATOM 759 CB TYR 82 24.510 67.159 24.053 1.00 99.90 C ATOM 760 CG TYR 82 23.801 66.308 23.022 1.00 99.90 C ATOM 761 CD1 TYR 82 24.380 65.148 22.532 1.00 99.90 C ATOM 762 CD2 TYR 82 22.550 66.670 22.541 1.00 99.90 C ATOM 763 CE1 TYR 82 23.738 64.369 21.590 1.00 99.90 C ATOM 764 CE2 TYR 82 21.897 65.898 21.599 1.00 99.90 C ATOM 765 CZ TYR 82 22.494 64.748 21.127 1.00 99.90 C ATOM 766 OH TYR 82 21.847 63.976 20.190 1.00 99.90 H ATOM 769 N SER 83 26.277 67.486 27.008 1.00 99.90 N ATOM 770 CA SER 83 27.343 68.262 27.630 1.00 99.90 C ATOM 771 C SER 83 27.594 69.558 26.873 1.00 99.90 C ATOM 772 O SER 83 28.736 70.005 26.750 1.00 99.90 O ATOM 773 CB SER 83 28.614 67.437 27.703 1.00 99.90 C ATOM 774 OG SER 83 29.127 67.375 29.005 1.00 99.90 O ATOM 777 N SER 84 26.525 70.160 26.365 1.00 99.90 N ATOM 778 CA SER 84 26.629 71.394 25.599 1.00 99.90 C ATOM 779 C SER 84 26.515 72.616 26.501 1.00 99.90 C ATOM 780 O SER 84 25.671 72.663 27.395 1.00 99.90 O ATOM 781 CB SER 84 25.563 71.433 24.522 1.00 99.90 C ATOM 782 OG SER 84 25.679 72.564 23.704 1.00 99.90 O ATOM 785 N CYS 85 27.372 73.603 26.263 1.00 99.90 N ATOM 786 CA CYS 85 27.426 74.791 27.106 1.00 99.90 C ATOM 787 C CYS 85 26.549 75.904 26.548 1.00 99.90 C ATOM 788 O CYS 85 26.195 75.897 25.369 1.00 99.90 O ATOM 789 CB CYS 85 28.902 75.186 27.040 1.00 99.90 C ATOM 790 SG CYS 85 30.040 73.797 26.819 1.00 99.90 S ATOM 792 N CYS 86 26.200 76.860 27.402 1.00 99.90 N ATOM 793 CA CYS 86 25.454 78.037 26.971 1.00 99.90 C ATOM 794 C CYS 86 26.129 78.713 25.784 1.00 99.90 C ATOM 795 O CYS 86 25.461 79.239 24.895 1.00 99.90 O ATOM 796 CB CYS 86 25.504 78.939 28.205 1.00 99.90 C ATOM 797 SG CYS 86 24.588 80.490 28.038 1.00 99.90 S ATOM 799 N HIS 87 27.458 78.697 25.777 1.00 99.90 N ATOM 800 CA HIS 87 28.225 79.262 24.675 1.00 99.90 C ATOM 801 C HIS 87 28.009 78.472 23.391 1.00 99.90 C ATOM 802 O HIS 87 27.947 79.044 22.301 1.00 99.90 O ATOM 803 CB HIS 87 29.718 79.304 25.019 1.00 99.90 C ATOM 804 CG HIS 87 30.040 80.176 26.191 1.00 99.90 C ATOM 805 CD2 HIS 87 29.247 80.721 27.143 1.00 99.90 C ATOM 806 ND1 HIS 87 31.326 80.581 26.485 1.00 99.90 N ATOM 807 CE1 HIS 87 31.309 81.339 27.568 1.00 99.90 C ATOM 808 NE2 HIS 87 30.060 81.439 27.986 1.00 99.90 N ATOM 812 N ASP 88 27.893 77.156 23.525 1.00 99.90 N ATOM 813 CA ASP 88 27.593 76.293 22.387 1.00 99.90 C ATOM 814 C ASP 88 26.192 76.554 21.854 1.00 99.90 C ATOM 815 O ASP 88 25.960 76.518 20.645 1.00 99.90 O ATOM 816 CB ASP 88 27.741 74.820 22.779 1.00 99.90 C ATOM 817 CG ASP 88 29.114 74.449 23.323 1.00 99.90 C ATOM 818 OD1 ASP 88 29.946 75.318 23.428 1.00 99.90 O ATOM 819 OD2 ASP 88 29.271 73.339 23.776 1.00 99.90 O ATOM 821 N PHE 89 25.257 76.818 22.761 1.00 99.90 N ATOM 822 CA PHE 89 23.890 77.151 22.378 1.00 99.90 C ATOM 823 C PHE 89 23.810 78.549 21.779 1.00 99.90 C ATOM 824 O PHE 89 22.961 78.824 20.932 1.00 99.90 O ATOM 825 CB PHE 89 22.957 77.042 23.585 1.00 99.90 C ATOM 826 CG PHE 89 22.992 75.700 24.260 1.00 99.90 C ATOM 827 CD1 PHE 89 22.916 74.532 23.515 1.00 99.90 C ATOM 828 CD2 PHE 89 23.101 75.602 25.639 1.00 99.90 C ATOM 829 CE1 PHE 89 22.949 73.296 24.135 1.00 99.90 C ATOM 830 CE2 PHE 89 23.135 74.369 26.260 1.00 99.90 C ATOM 831 CZ PHE 89 23.058 73.215 25.507 1.00 99.90 C ATOM 833 N ASP 90 24.701 79.429 22.225 1.00 99.90 N ATOM 834 CA ASP 90 24.819 80.761 21.642 1.00 99.90 C ATOM 835 C ASP 90 25.416 80.697 20.241 1.00 99.90 C ATOM 836 O ASP 90 25.056 81.485 19.367 1.00 99.90 O ATOM 837 CB ASP 90 25.672 81.664 22.536 1.00 99.90 C ATOM 838 CG ASP 90 24.879 82.691 23.333 1.00 99.90 C ATOM 839 OD1 ASP 90 24.355 83.601 22.736 1.00 99.90 O ATOM 840 OD2 ASP 90 24.669 82.472 24.503 1.00 99.90 O ATOM 842 N GLU 91 26.330 79.756 20.035 1.00 99.90 N ATOM 843 CA GLU 91 26.880 79.498 18.709 1.00 99.90 C ATOM 844 C GLU 91 25.791 79.059 17.738 1.00 99.90 C ATOM 845 O GLU 91 25.742 79.516 16.597 1.00 99.90 O ATOM 846 CB GLU 91 27.978 78.435 18.781 1.00 99.90 C ATOM 847 CG GLU 91 27.887 77.361 17.707 1.00 99.90 C ATOM 848 CD GLU 91 29.207 76.668 17.513 1.00 99.90 C ATOM 849 OE1 GLU 91 30.195 77.167 17.997 1.00 99.90 O ATOM 850 OE2 GLU 91 29.212 75.584 16.980 1.00 99.90 O ATOM 852 N LEU 92 24.916 78.170 18.199 1.00 99.90 N ATOM 853 CA LEU 92 23.802 77.698 17.386 1.00 99.90 C ATOM 854 C LEU 92 22.789 78.809 17.143 1.00 99.90 C ATOM 855 O LEU 92 22.247 78.939 16.046 1.00 99.90 O ATOM 856 CB LEU 92 23.126 76.496 18.059 1.00 99.90 C ATOM 857 CG LEU 92 24.079 75.522 18.764 1.00 99.90 C ATOM 858 CD1 LEU 92 23.281 74.498 19.561 1.00 99.90 C ATOM 859 CD2 LEU 92 24.961 74.836 17.732 1.00 99.90 C ATOM 861 N CYS 93 22.536 79.608 18.174 1.00 99.90 N ATOM 862 CA CYS 93 21.625 80.740 18.060 1.00 99.90 C ATOM 863 C CYS 93 22.137 81.759 17.050 1.00 99.90 C ATOM 864 O CYS 93 21.362 82.328 16.282 1.00 99.90 O ATOM 865 CB CYS 93 21.638 81.327 19.472 1.00 99.90 C ATOM 866 SG CYS 93 20.482 82.696 19.726 1.00 99.90 S ATOM 868 N LEU 94 23.446 81.986 17.058 1.00 99.90 N ATOM 869 CA LEU 94 24.074 82.883 16.094 1.00 99.90 C ATOM 870 C LEU 94 23.901 82.369 14.670 1.00 99.90 C ATOM 871 O LEU 94 23.599 83.137 13.756 1.00 99.90 O ATOM 872 CB LEU 94 25.562 83.055 16.422 1.00 99.90 C ATOM 873 CG LEU 94 25.988 84.482 16.790 1.00 99.90 C ATOM 874 CD1 LEU 94 25.136 85.002 17.939 1.00 99.90 C ATOM 875 CD2 LEU 94 27.463 84.492 17.164 1.00 99.90 C ATOM 877 N LYS 95 24.094 81.067 14.489 1.00 99.90 N ATOM 878 CA LYS 95 23.984 80.453 13.171 1.00 99.90 C ATOM 879 C LYS 95 22.530 80.345 12.733 1.00 99.90 C ATOM 880 O LYS 95 22.234 80.266 11.540 1.00 99.90 O ATOM 881 CB LYS 95 24.640 79.071 13.168 1.00 99.90 C ATOM 882 CG LYS 95 26.040 79.037 13.764 1.00 99.90 C ATOM 883 CD LYS 95 26.901 77.975 13.095 1.00 99.90 C ATOM 884 CE LYS 95 27.786 78.580 12.015 1.00 99.90 C ATOM 885 NZ LYS 95 28.466 77.535 11.203 1.00 99.90 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 76.82 50.0 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 74.27 51.8 56 100.0 56 ARMSMC BURIED . . . . . . . . 82.96 45.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 83.13 25.0 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 84.15 25.7 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 74.20 28.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 100.51 18.2 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.99 21.7 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 69.85 23.5 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 76.11 22.2 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 48.28 20.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 106.29 22.2 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 103.88 25.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 101.13 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 122.66 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 23.73 80.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 23.73 80.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 21.68 100.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 30.58 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 8.73 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 8.73 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.2181 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 8.93 29 100.0 29 CRMSCA BURIED . . . . . . . . 8.17 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 8.82 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 9.04 142 100.0 142 CRMSMC BURIED . . . . . . . . 8.23 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 9.91 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 9.63 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 10.46 103 100.0 103 CRMSSC BURIED . . . . . . . . 8.33 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 9.28 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 9.65 219 100.0 219 CRMSALL BURIED . . . . . . . . 8.22 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.443 0.845 0.856 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 91.213 0.841 0.853 29 100.0 29 ERRCA BURIED . . . . . . . . 92.051 0.855 0.866 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.364 0.843 0.855 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 91.118 0.839 0.852 142 100.0 142 ERRMC BURIED . . . . . . . . 91.997 0.854 0.865 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 90.571 0.831 0.845 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 90.847 0.836 0.849 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 89.825 0.818 0.834 103 100.0 103 ERRSC BURIED . . . . . . . . 92.494 0.864 0.875 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 91.050 0.838 0.851 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 90.587 0.830 0.844 219 100.0 219 ERRALL BURIED . . . . . . . . 92.257 0.859 0.870 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 1 30 40 40 DISTCA CA (P) 0.00 0.00 0.00 2.50 75.00 40 DISTCA CA (RMS) 0.00 0.00 0.00 3.96 7.76 DISTCA ALL (N) 0 3 9 21 193 303 303 DISTALL ALL (P) 0.00 0.99 2.97 6.93 63.70 303 DISTALL ALL (RMS) 0.00 1.72 2.40 3.36 7.53 DISTALL END of the results output