####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS037_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS037_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 2.23 2.23 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 43 97 - 139 1.81 2.26 LONGEST_CONTINUOUS_SEGMENT: 43 98 - 140 1.91 2.26 LCS_AVERAGE: 93.73 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 115 - 139 0.97 2.38 LCS_AVERAGE: 41.53 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 4 6 45 3 4 4 19 25 33 36 38 42 43 43 44 45 45 45 45 45 45 45 45 LCS_GDT A 97 A 97 4 43 45 3 4 4 6 10 25 40 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT R 98 R 98 4 43 45 3 4 4 4 11 26 31 40 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT G 99 G 99 13 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT W 100 W 100 13 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT E 101 E 101 13 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 102 C 102 13 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT T 103 T 103 13 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT K 104 K 104 13 43 45 7 18 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT D 105 D 105 13 43 45 7 16 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT R 106 R 106 13 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 107 C 107 13 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT G 108 G 108 13 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT E 109 E 109 13 43 45 9 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT V 110 V 110 13 43 45 9 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT R 111 R 111 13 43 45 4 5 10 17 33 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT N 112 N 112 5 43 45 5 20 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT E 113 E 113 7 43 45 4 7 15 21 30 37 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT E 114 E 114 20 43 45 4 18 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT N 115 N 115 25 43 45 8 22 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT A 116 A 116 25 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 117 C 117 25 43 45 8 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT H 118 H 118 25 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 119 C 119 25 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT S 120 S 120 25 43 45 5 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT E 121 E 121 25 43 45 8 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT D 122 D 122 25 43 45 8 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 123 C 123 25 43 45 8 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT L 124 L 124 25 43 45 3 7 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT S 125 S 125 25 43 45 4 7 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT R 126 R 126 25 43 45 4 19 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT G 127 G 127 25 43 45 4 23 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT D 128 D 128 25 43 45 9 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 129 C 129 25 43 45 10 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 130 C 130 25 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT T 131 T 131 25 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT N 132 N 132 25 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT Y 133 Y 133 25 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT Q 134 Q 134 25 43 45 4 24 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT V 135 V 135 25 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT V 136 V 136 25 43 45 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT C 137 C 137 25 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT K 138 K 138 25 43 45 7 24 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT G 139 G 139 25 43 45 7 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 LCS_GDT E 140 E 140 3 43 45 3 3 3 3 4 5 7 24 28 42 44 44 45 45 45 45 45 45 45 45 LCS_AVERAGE LCS_A: 78.42 ( 41.53 93.73 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 27 33 38 39 39 41 42 42 43 44 44 45 45 45 45 45 45 45 45 GDT PERCENT_AT 24.44 60.00 73.33 84.44 86.67 86.67 91.11 93.33 93.33 95.56 97.78 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.38 0.68 0.83 1.06 1.11 1.11 1.42 1.61 1.61 1.81 2.03 2.03 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 GDT RMS_ALL_AT 2.39 2.37 2.40 2.35 2.31 2.31 2.27 2.25 2.25 2.26 2.25 2.25 2.23 2.23 2.23 2.23 2.23 2.23 2.23 2.23 # Checking swapping # possible swapping detected: D 105 D 105 # possible swapping detected: E 109 E 109 # possible swapping detected: E 121 E 121 # possible swapping detected: D 122 D 122 # possible swapping detected: D 128 D 128 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 6.241 0 0.695 0.642 9.134 29.405 22.517 LGA A 97 A 97 4.993 0 0.101 0.121 7.630 26.548 22.667 LGA R 98 R 98 5.810 0 0.265 1.006 18.432 29.048 10.823 LGA G 99 G 99 0.187 0 0.267 0.267 1.463 92.976 92.976 LGA W 100 W 100 0.614 0 0.079 0.098 1.007 88.214 89.830 LGA E 101 E 101 0.639 0 0.068 0.877 4.282 90.476 77.143 LGA C 102 C 102 0.883 0 0.051 0.640 1.670 90.476 87.540 LGA T 103 T 103 1.257 0 0.073 1.154 3.475 79.286 72.245 LGA K 104 K 104 1.869 0 0.062 0.922 5.590 72.857 56.614 LGA D 105 D 105 1.929 0 0.102 0.302 2.129 72.857 72.917 LGA R 106 R 106 0.801 0 0.151 0.673 2.164 85.952 84.286 LGA C 107 C 107 1.495 0 0.055 0.729 3.557 79.286 73.651 LGA G 108 G 108 1.118 0 0.052 0.052 1.251 81.429 81.429 LGA E 109 E 109 1.026 0 0.235 0.754 4.875 81.548 61.958 LGA V 110 V 110 1.487 0 0.705 1.075 5.240 69.762 57.959 LGA R 111 R 111 3.465 0 0.079 0.709 15.328 55.714 22.727 LGA N 112 N 112 1.047 0 0.134 1.260 7.440 81.548 54.226 LGA E 113 E 113 4.122 0 0.188 1.262 11.408 48.571 24.392 LGA E 114 E 114 1.499 0 0.053 0.728 5.498 81.786 57.566 LGA N 115 N 115 0.775 0 0.121 0.345 0.822 92.857 92.857 LGA A 116 A 116 0.747 0 0.120 0.116 0.943 90.476 90.476 LGA C 117 C 117 0.538 0 0.117 0.238 1.611 97.619 90.794 LGA H 118 H 118 0.932 0 0.206 1.173 3.346 88.214 80.238 LGA C 119 C 119 0.661 0 0.196 0.277 1.523 88.214 84.524 LGA S 120 S 120 0.836 0 0.126 0.616 2.220 92.857 86.270 LGA E 121 E 121 1.098 0 0.069 0.698 2.335 83.690 79.630 LGA D 122 D 122 0.067 0 0.133 0.820 2.919 97.619 84.464 LGA C 123 C 123 0.091 0 0.044 0.803 3.456 92.976 86.984 LGA L 124 L 124 1.862 0 0.050 1.383 4.577 70.952 67.917 LGA S 125 S 125 2.318 0 0.187 0.544 3.123 63.095 61.190 LGA R 126 R 126 2.070 0 0.170 0.798 2.993 64.881 73.983 LGA G 127 G 127 1.325 0 0.139 0.139 1.435 81.429 81.429 LGA D 128 D 128 1.022 0 0.038 0.532 2.362 85.952 83.929 LGA C 129 C 129 0.914 0 0.039 0.250 1.149 92.857 89.048 LGA C 130 C 130 0.353 0 0.061 0.168 1.759 95.238 90.714 LGA T 131 T 131 1.126 0 0.216 1.057 3.190 88.214 78.367 LGA N 132 N 132 1.180 0 0.024 1.014 3.461 85.952 77.619 LGA Y 133 Y 133 0.474 0 0.054 0.628 1.908 92.857 88.333 LGA Q 134 Q 134 1.477 0 0.067 0.955 5.849 79.286 65.661 LGA V 135 V 135 1.271 0 0.050 0.077 2.479 88.333 80.544 LGA V 136 V 136 0.600 0 0.023 0.882 3.390 92.857 84.762 LGA C 137 C 137 0.984 0 0.133 0.747 2.935 88.333 81.984 LGA K 138 K 138 1.503 0 0.099 0.189 4.203 79.286 63.280 LGA G 139 G 139 1.547 0 0.593 0.593 5.165 57.619 57.619 LGA E 140 E 140 6.727 0 0.220 1.180 8.702 14.524 11.746 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 2.229 2.204 3.855 77.421 69.729 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 42 1.61 84.444 88.958 2.452 LGA_LOCAL RMSD: 1.613 Number of atoms: 42 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.247 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.229 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.210424 * X + -0.826372 * Y + 0.522332 * Z + -16.317688 Y_new = -0.951050 * X + -0.296736 * Y + -0.086325 * Z + 228.993652 Z_new = 0.226331 * X + -0.478599 * Y + -0.848362 * Z + 139.428391 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.353049 -0.228309 -2.627954 [DEG: -77.5240 -13.0811 -150.5707 ] ZXZ: 1.407009 2.583679 2.699857 [DEG: 80.6157 148.0339 154.6904 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS037_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS037_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 42 1.61 88.958 2.23 REMARK ---------------------------------------------------------- MOLECULE T0543TS037_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 728 N THR 96 17.150 90.916 19.859 1.00 0.00 N ATOM 729 CA THR 96 15.677 90.850 19.635 1.00 0.00 C ATOM 730 C THR 96 15.328 89.506 20.235 1.00 0.00 C ATOM 731 O THR 96 15.903 88.509 19.722 1.00 0.00 O ATOM 732 CB THR 96 15.364 90.757 18.100 1.00 0.00 C ATOM 733 OG1 THR 96 15.684 92.019 17.410 1.00 0.00 O ATOM 734 CG2 THR 96 13.876 90.507 17.838 1.00 0.00 C ATOM 735 N ALA 97 14.246 89.326 20.898 1.00 0.00 N ATOM 736 CA ALA 97 14.068 88.052 21.511 1.00 0.00 C ATOM 737 C ALA 97 13.071 87.080 20.849 1.00 0.00 C ATOM 738 O ALA 97 11.849 87.274 20.864 1.00 0.00 O ATOM 739 CB ALA 97 13.707 88.112 22.994 1.00 0.00 C ATOM 740 N ARG 98 13.697 86.094 20.211 1.00 0.00 N ATOM 741 CA ARG 98 13.089 84.963 19.571 1.00 0.00 C ATOM 742 C ARG 98 11.896 85.237 18.614 1.00 0.00 C ATOM 743 O ARG 98 10.824 84.643 18.888 1.00 0.00 O ATOM 744 CB ARG 98 12.723 84.005 20.730 1.00 0.00 C ATOM 745 CG ARG 98 13.942 83.478 21.501 1.00 0.00 C ATOM 746 CD ARG 98 13.563 82.612 22.708 1.00 0.00 C ATOM 747 NE ARG 98 12.956 81.326 22.320 1.00 0.00 N ATOM 748 CZ ARG 98 12.557 80.385 23.160 1.00 0.00 C ATOM 749 NH1 ARG 98 12.055 79.262 22.731 1.00 0.00 H ATOM 750 NH2 ARG 98 12.648 80.533 24.453 1.00 0.00 H ATOM 751 N GLY 99 11.969 86.165 17.653 1.00 0.00 N ATOM 752 CA GLY 99 10.832 86.241 16.763 1.00 0.00 C ATOM 753 C GLY 99 10.862 84.893 15.940 1.00 0.00 C ATOM 754 O GLY 99 11.898 84.575 15.329 1.00 0.00 O ATOM 755 N TRP 100 9.720 84.296 15.764 1.00 0.00 N ATOM 756 CA TRP 100 9.469 83.075 14.952 1.00 0.00 C ATOM 757 C TRP 100 8.509 83.334 13.748 1.00 0.00 C ATOM 758 O TRP 100 8.320 82.384 12.974 1.00 0.00 O ATOM 759 CB TRP 100 8.856 81.982 15.845 1.00 0.00 C ATOM 760 CG TRP 100 9.597 81.751 17.129 1.00 0.00 C ATOM 761 CD1 TRP 100 9.164 82.124 18.352 1.00 0.00 C ATOM 762 CD2 TRP 100 10.906 81.133 17.339 1.00 0.00 C ATOM 763 NE1 TRP 100 10.101 81.781 19.303 1.00 0.00 N ATOM 764 CE2 TRP 100 11.192 81.157 18.736 1.00 0.00 C ATOM 765 CE3 TRP 100 11.878 80.552 16.500 1.00 0.00 C ATOM 766 CZ2 TRP 100 12.371 80.621 19.278 1.00 0.00 C ATOM 767 CZ3 TRP 100 13.069 80.016 17.027 1.00 0.00 C ATOM 768 CH2 TRP 100 13.319 80.044 18.412 1.00 0.00 H ATOM 769 N GLU 101 8.224 84.598 13.383 1.00 0.00 N ATOM 770 CA GLU 101 7.320 85.002 12.387 1.00 0.00 C ATOM 771 C GLU 101 7.903 86.101 11.447 1.00 0.00 C ATOM 772 O GLU 101 8.432 87.142 11.871 1.00 0.00 O ATOM 773 CB GLU 101 6.134 85.635 13.162 1.00 0.00 C ATOM 774 CG GLU 101 5.314 84.592 13.999 1.00 0.00 C ATOM 775 CD GLU 101 4.550 83.605 13.110 1.00 0.00 C ATOM 776 OE1 GLU 101 3.374 83.904 12.802 1.00 0.00 O ATOM 777 OE2 GLU 101 5.160 82.613 12.647 1.00 0.00 O ATOM 778 N CYS 102 8.004 85.685 10.238 1.00 0.00 N ATOM 779 CA CYS 102 8.389 86.358 9.065 1.00 0.00 C ATOM 780 C CYS 102 7.359 87.412 8.610 1.00 0.00 C ATOM 781 O CYS 102 6.156 87.322 8.880 1.00 0.00 O ATOM 782 CB CYS 102 8.398 85.255 7.959 1.00 0.00 C ATOM 783 SG CYS 102 9.230 85.714 6.407 1.00 0.00 S ATOM 784 N THR 103 7.867 88.470 8.008 1.00 0.00 N ATOM 785 CA THR 103 7.084 89.533 7.409 1.00 0.00 C ATOM 786 C THR 103 7.393 89.631 5.874 1.00 0.00 C ATOM 787 O THR 103 8.268 88.907 5.385 1.00 0.00 O ATOM 788 CB THR 103 7.223 90.872 8.232 1.00 0.00 C ATOM 789 OG1 THR 103 6.206 91.869 7.941 1.00 0.00 O ATOM 790 CG2 THR 103 8.558 91.506 8.414 1.00 0.00 C ATOM 791 N LYS 104 6.391 90.052 5.064 1.00 0.00 N ATOM 792 CA LYS 104 6.585 90.097 3.587 1.00 0.00 C ATOM 793 C LYS 104 7.967 90.779 3.256 1.00 0.00 C ATOM 794 O LYS 104 8.512 90.406 2.207 1.00 0.00 O ATOM 795 CB LYS 104 5.369 90.625 2.808 1.00 0.00 C ATOM 796 CG LYS 104 5.404 90.055 1.376 1.00 0.00 C ATOM 797 CD LYS 104 4.014 90.108 0.725 1.00 0.00 C ATOM 798 CE LYS 104 3.844 89.102 -0.415 1.00 0.00 C ATOM 799 NZ LYS 104 2.408 88.911 -0.730 1.00 0.00 N ATOM 800 N ASP 105 8.310 91.970 3.811 1.00 0.00 N ATOM 801 CA ASP 105 9.635 92.565 3.596 1.00 0.00 C ATOM 802 C ASP 105 10.780 91.525 3.916 1.00 0.00 C ATOM 803 O ASP 105 11.794 91.581 3.214 1.00 0.00 O ATOM 804 CB ASP 105 9.713 93.853 4.439 1.00 0.00 C ATOM 805 CG ASP 105 9.198 93.830 5.891 1.00 0.00 C ATOM 806 OD1 ASP 105 8.003 93.499 6.064 1.00 0.00 O ATOM 807 OD2 ASP 105 9.870 94.205 6.881 1.00 0.00 O ATOM 808 N ARG 106 10.641 90.637 4.947 1.00 0.00 N ATOM 809 CA ARG 106 11.573 89.578 5.361 1.00 0.00 C ATOM 810 C ARG 106 11.698 88.499 4.201 1.00 0.00 C ATOM 811 O ARG 106 12.797 87.974 4.018 1.00 0.00 O ATOM 812 CB ARG 106 10.998 89.030 6.676 1.00 0.00 C ATOM 813 CG ARG 106 11.563 89.764 7.907 1.00 0.00 C ATOM 814 CD ARG 106 11.222 88.955 9.168 1.00 0.00 C ATOM 815 NE ARG 106 11.981 89.354 10.376 1.00 0.00 N ATOM 816 CZ ARG 106 12.985 88.648 10.873 1.00 0.00 C ATOM 817 NH1 ARG 106 13.247 88.668 12.145 1.00 0.00 H ATOM 818 NH2 ARG 106 13.749 87.884 10.156 1.00 0.00 H ATOM 819 N CYS 107 10.580 88.068 3.541 1.00 0.00 N ATOM 820 CA CYS 107 10.439 87.180 2.349 1.00 0.00 C ATOM 821 C CYS 107 11.453 87.553 1.257 1.00 0.00 C ATOM 822 O CYS 107 11.487 88.707 0.799 1.00 0.00 O ATOM 823 CB CYS 107 9.046 87.511 1.772 1.00 0.00 C ATOM 824 SG CYS 107 8.732 86.103 0.601 1.00 0.00 S ATOM 825 N GLY 108 12.442 86.664 1.006 1.00 0.00 N ATOM 826 CA GLY 108 13.493 86.865 -0.039 1.00 0.00 C ATOM 827 C GLY 108 14.816 87.589 0.467 1.00 0.00 C ATOM 828 O GLY 108 15.701 87.770 -0.380 1.00 0.00 O ATOM 829 N GLU 109 14.941 88.027 1.744 1.00 0.00 N ATOM 830 CA GLU 109 16.105 88.735 2.286 1.00 0.00 C ATOM 831 C GLU 109 17.281 87.736 2.477 1.00 0.00 C ATOM 832 O GLU 109 17.306 86.996 3.468 1.00 0.00 O ATOM 833 CB GLU 109 15.729 89.451 3.598 1.00 0.00 C ATOM 834 CG GLU 109 16.841 90.420 4.027 1.00 0.00 C ATOM 835 CD GLU 109 16.512 91.310 5.242 1.00 0.00 C ATOM 836 OE1 GLU 109 15.574 91.014 6.028 1.00 0.00 O ATOM 837 OE2 GLU 109 17.228 92.329 5.397 1.00 0.00 O ATOM 838 N VAL 110 18.334 87.941 1.678 1.00 0.00 N ATOM 839 CA VAL 110 19.548 87.106 1.703 1.00 0.00 C ATOM 840 C VAL 110 20.482 87.315 2.972 1.00 0.00 C ATOM 841 O VAL 110 21.331 86.441 3.189 1.00 0.00 O ATOM 842 CB VAL 110 20.384 87.338 0.402 1.00 0.00 C ATOM 843 CG1 VAL 110 21.400 86.174 0.178 1.00 0.00 C ATOM 844 CG2 VAL 110 19.504 87.332 -0.871 1.00 0.00 C ATOM 845 N ARG 111 20.226 88.285 3.895 1.00 0.00 N ATOM 846 CA ARG 111 21.138 88.502 5.059 1.00 0.00 C ATOM 847 C ARG 111 20.363 88.293 6.378 1.00 0.00 C ATOM 848 O ARG 111 19.473 89.116 6.689 1.00 0.00 O ATOM 849 CB ARG 111 21.789 89.907 5.006 1.00 0.00 C ATOM 850 CG ARG 111 22.399 90.365 6.339 1.00 0.00 C ATOM 851 CD ARG 111 22.988 91.736 6.326 1.00 0.00 C ATOM 852 NE ARG 111 24.073 91.836 5.360 1.00 0.00 N ATOM 853 CZ ARG 111 24.768 92.942 5.118 1.00 0.00 C ATOM 854 NH1 ARG 111 24.503 94.068 5.772 1.00 0.00 H ATOM 855 NH2 ARG 111 25.741 92.919 4.219 1.00 0.00 H ATOM 856 N ASN 112 20.609 87.218 7.077 1.00 0.00 N ATOM 857 CA ASN 112 19.909 86.926 8.344 1.00 0.00 C ATOM 858 C ASN 112 21.021 86.952 9.454 1.00 0.00 C ATOM 859 O ASN 112 21.660 85.915 9.708 1.00 0.00 O ATOM 860 CB ASN 112 19.267 85.516 8.185 1.00 0.00 C ATOM 861 CG ASN 112 17.937 85.489 7.412 1.00 0.00 C ATOM 862 OD1 ASN 112 17.046 86.307 7.571 1.00 0.00 O ATOM 863 ND2 ASN 112 17.745 84.510 6.551 1.00 0.00 N ATOM 864 N GLU 113 21.166 88.055 10.220 1.00 0.00 N ATOM 865 CA GLU 113 22.180 88.137 11.298 1.00 0.00 C ATOM 866 C GLU 113 21.905 87.205 12.545 1.00 0.00 C ATOM 867 O GLU 113 22.775 86.392 12.842 1.00 0.00 O ATOM 868 CB GLU 113 22.283 89.605 11.708 1.00 0.00 C ATOM 869 CG GLU 113 22.874 90.577 10.719 1.00 0.00 C ATOM 870 CD GLU 113 21.773 91.366 10.005 1.00 0.00 C ATOM 871 OE1 GLU 113 20.834 90.726 9.483 1.00 0.00 O ATOM 872 OE2 GLU 113 21.833 92.621 9.967 1.00 0.00 O ATOM 873 N GLU 114 20.840 87.457 13.338 1.00 0.00 N ATOM 874 CA GLU 114 20.470 86.736 14.586 1.00 0.00 C ATOM 875 C GLU 114 19.030 86.069 14.519 1.00 0.00 C ATOM 876 O GLU 114 18.661 85.466 15.542 1.00 0.00 O ATOM 877 CB GLU 114 20.561 87.747 15.763 1.00 0.00 C ATOM 878 CG GLU 114 20.482 87.100 17.165 1.00 0.00 C ATOM 879 CD GLU 114 21.303 87.870 18.201 1.00 0.00 C ATOM 880 OE1 GLU 114 20.959 89.020 18.566 1.00 0.00 O ATOM 881 OE2 GLU 114 22.348 87.348 18.653 1.00 0.00 O ATOM 882 N ASN 115 18.413 85.851 13.348 1.00 0.00 N ATOM 883 CA ASN 115 17.038 85.316 13.364 1.00 0.00 C ATOM 884 C ASN 115 16.928 83.842 13.738 1.00 0.00 C ATOM 885 O ASN 115 17.540 82.966 13.127 1.00 0.00 O ATOM 886 CB ASN 115 16.412 85.594 12.025 1.00 0.00 C ATOM 887 CG ASN 115 16.638 86.939 11.388 1.00 0.00 C ATOM 888 OD1 ASN 115 16.598 87.992 12.068 1.00 0.00 O ATOM 889 ND2 ASN 115 16.929 86.987 10.077 1.00 0.00 N ATOM 890 N ALA 116 15.933 83.627 14.595 1.00 0.00 N ATOM 891 CA ALA 116 15.485 82.329 15.084 1.00 0.00 C ATOM 892 C ALA 116 14.698 81.568 13.950 1.00 0.00 C ATOM 893 O ALA 116 14.666 80.333 14.000 1.00 0.00 O ATOM 894 CB ALA 116 14.640 82.581 16.337 1.00 0.00 C ATOM 895 N CYS 117 14.029 82.268 13.016 1.00 0.00 N ATOM 896 CA CYS 117 13.323 81.743 11.895 1.00 0.00 C ATOM 897 C CYS 117 13.901 82.405 10.609 1.00 0.00 C ATOM 898 O CYS 117 14.249 83.607 10.590 1.00 0.00 O ATOM 899 CB CYS 117 11.854 82.104 12.142 1.00 0.00 C ATOM 900 SG CYS 117 11.601 83.897 12.221 1.00 0.00 S ATOM 901 N HIS 118 14.122 81.621 9.574 1.00 0.00 N ATOM 902 CA HIS 118 14.635 82.104 8.302 1.00 0.00 C ATOM 903 C HIS 118 13.408 82.382 7.335 1.00 0.00 C ATOM 904 O HIS 118 12.753 81.432 6.885 1.00 0.00 O ATOM 905 CB HIS 118 15.609 81.056 7.848 1.00 0.00 C ATOM 906 CG HIS 118 16.772 80.878 8.852 1.00 0.00 C ATOM 907 ND1 HIS 118 17.766 81.812 9.166 1.00 0.00 N ATOM 908 CD2 HIS 118 16.922 79.779 9.648 1.00 0.00 C ATOM 909 CE1 HIS 118 18.513 81.233 10.121 1.00 0.00 C ATOM 910 NE2 HIS 118 18.021 80.024 10.440 1.00 0.00 N ATOM 911 N CYS 119 13.499 83.520 6.659 1.00 0.00 N ATOM 912 CA CYS 119 12.469 84.114 5.787 1.00 0.00 C ATOM 913 C CYS 119 12.749 83.988 4.228 1.00 0.00 C ATOM 914 O CYS 119 11.829 84.295 3.475 1.00 0.00 O ATOM 915 CB CYS 119 12.630 85.639 6.161 1.00 0.00 C ATOM 916 SG CYS 119 12.149 85.838 7.947 1.00 0.00 S ATOM 917 N SER 120 13.914 83.549 3.765 1.00 0.00 N ATOM 918 CA SER 120 14.266 83.511 2.323 1.00 0.00 C ATOM 919 C SER 120 13.946 82.206 1.624 1.00 0.00 C ATOM 920 O SER 120 13.243 81.342 2.155 1.00 0.00 O ATOM 921 CB SER 120 15.762 83.704 2.189 1.00 0.00 C ATOM 922 OG SER 120 16.429 84.598 3.000 1.00 0.00 O ATOM 923 N GLU 121 13.951 82.349 0.262 1.00 0.00 N ATOM 924 CA GLU 121 13.773 81.213 -0.644 1.00 0.00 C ATOM 925 C GLU 121 14.737 80.056 -0.202 1.00 0.00 C ATOM 926 O GLU 121 14.415 78.914 -0.533 1.00 0.00 O ATOM 927 CB GLU 121 13.961 81.666 -2.099 1.00 0.00 C ATOM 928 CG GLU 121 12.909 82.659 -2.597 1.00 0.00 C ATOM 929 CD GLU 121 11.499 82.097 -2.880 1.00 0.00 C ATOM 930 OE1 GLU 121 10.967 82.333 -3.986 1.00 0.00 O ATOM 931 OE2 GLU 121 10.821 81.541 -1.979 1.00 0.00 O ATOM 932 N ASP 122 16.016 80.339 0.167 1.00 0.00 N ATOM 933 CA ASP 122 16.990 79.378 0.699 1.00 0.00 C ATOM 934 C ASP 122 16.376 78.593 1.912 1.00 0.00 C ATOM 935 O ASP 122 16.876 77.495 2.178 1.00 0.00 O ATOM 936 CB ASP 122 18.282 80.142 1.039 1.00 0.00 C ATOM 937 CG ASP 122 19.355 79.305 1.689 1.00 0.00 C ATOM 938 OD1 ASP 122 19.821 78.318 1.088 1.00 0.00 O ATOM 939 OD2 ASP 122 19.741 79.639 2.832 1.00 0.00 O ATOM 940 N CYS 123 15.618 79.254 2.804 1.00 0.00 N ATOM 941 CA CYS 123 14.887 78.675 3.931 1.00 0.00 C ATOM 942 C CYS 123 13.844 77.622 3.360 1.00 0.00 C ATOM 943 O CYS 123 13.615 76.654 4.077 1.00 0.00 O ATOM 944 CB CYS 123 14.249 79.857 4.625 1.00 0.00 C ATOM 945 SG CYS 123 15.509 81.100 4.889 1.00 0.00 S ATOM 946 N LEU 124 13.098 77.886 2.250 1.00 0.00 N ATOM 947 CA LEU 124 12.211 76.892 1.646 1.00 0.00 C ATOM 948 C LEU 124 13.087 75.685 1.146 1.00 0.00 C ATOM 949 O LEU 124 12.735 74.560 1.498 1.00 0.00 O ATOM 950 CB LEU 124 11.394 77.503 0.496 1.00 0.00 C ATOM 951 CG LEU 124 10.255 76.638 -0.030 1.00 0.00 C ATOM 952 CD1 LEU 124 9.206 76.303 1.036 1.00 0.00 C ATOM 953 CD2 LEU 124 9.537 77.385 -1.157 1.00 0.00 C ATOM 954 N SER 125 14.145 75.880 0.309 1.00 0.00 N ATOM 955 CA SER 125 15.103 74.853 -0.163 1.00 0.00 C ATOM 956 C SER 125 15.588 73.917 1.002 1.00 0.00 C ATOM 957 O SER 125 15.527 72.703 0.787 1.00 0.00 O ATOM 958 CB SER 125 16.268 75.554 -0.882 1.00 0.00 C ATOM 959 OG SER 125 17.145 74.691 -1.604 1.00 0.00 O ATOM 960 N ARG 126 16.209 74.411 2.093 1.00 0.00 N ATOM 961 CA ARG 126 16.631 73.604 3.280 1.00 0.00 C ATOM 962 C ARG 126 15.471 73.028 4.129 1.00 0.00 C ATOM 963 O ARG 126 15.573 71.867 4.503 1.00 0.00 O ATOM 964 CB ARG 126 17.353 74.485 4.250 1.00 0.00 C ATOM 965 CG ARG 126 18.781 74.690 4.004 1.00 0.00 C ATOM 966 CD ARG 126 19.347 75.074 5.347 1.00 0.00 C ATOM 967 NE ARG 126 20.641 75.673 5.100 1.00 0.00 N ATOM 968 CZ ARG 126 20.754 76.950 4.745 1.00 0.00 C ATOM 969 NH1 ARG 126 19.713 77.794 4.826 1.00 0.00 H ATOM 970 NH2 ARG 126 21.958 77.382 4.379 1.00 0.00 H ATOM 971 N GLY 127 14.420 73.812 4.401 1.00 0.00 N ATOM 972 CA GLY 127 13.383 73.412 5.317 1.00 0.00 C ATOM 973 C GLY 127 13.328 74.311 6.627 1.00 0.00 C ATOM 974 O GLY 127 12.592 73.925 7.541 1.00 0.00 O ATOM 975 N ASP 128 14.142 75.399 6.780 1.00 0.00 N ATOM 976 CA ASP 128 14.218 76.283 7.959 1.00 0.00 C ATOM 977 C ASP 128 13.236 77.510 7.933 1.00 0.00 C ATOM 978 O ASP 128 13.433 78.411 8.745 1.00 0.00 O ATOM 979 CB ASP 128 15.697 76.659 8.098 1.00 0.00 C ATOM 980 CG ASP 128 16.436 77.396 6.997 1.00 0.00 C ATOM 981 OD1 ASP 128 17.311 76.769 6.357 1.00 0.00 O ATOM 982 OD2 ASP 128 16.229 78.604 6.769 1.00 0.00 O ATOM 983 N CYS 129 12.205 77.546 7.060 1.00 0.00 N ATOM 984 CA CYS 129 11.178 78.548 6.991 1.00 0.00 C ATOM 985 C CYS 129 10.556 78.750 8.377 1.00 0.00 C ATOM 986 O CYS 129 10.452 77.819 9.192 1.00 0.00 O ATOM 987 CB CYS 129 10.061 77.992 6.091 1.00 0.00 C ATOM 988 SG CYS 129 10.534 78.146 4.354 1.00 0.00 S ATOM 989 N CYS 130 10.134 79.954 8.579 1.00 0.00 N ATOM 990 CA CYS 130 9.425 80.307 9.781 1.00 0.00 C ATOM 991 C CYS 130 7.972 79.672 9.707 1.00 0.00 C ATOM 992 O CYS 130 7.543 79.197 8.632 1.00 0.00 O ATOM 993 CB CYS 130 9.232 81.826 9.687 1.00 0.00 C ATOM 994 SG CYS 130 10.603 82.736 8.909 1.00 0.00 S ATOM 995 N THR 131 7.266 79.458 10.834 1.00 0.00 N ATOM 996 CA THR 131 5.855 78.959 10.808 1.00 0.00 C ATOM 997 C THR 131 5.002 79.875 9.833 1.00 0.00 C ATOM 998 O THR 131 4.452 79.333 8.864 1.00 0.00 O ATOM 999 CB THR 131 5.260 78.903 12.252 1.00 0.00 C ATOM 1000 OG1 THR 131 6.130 78.312 13.214 1.00 0.00 O ATOM 1001 CG2 THR 131 3.869 78.171 12.296 1.00 0.00 C ATOM 1002 N ASN 132 4.891 81.215 10.065 1.00 0.00 N ATOM 1003 CA ASN 132 4.189 82.209 9.209 1.00 0.00 C ATOM 1004 C ASN 132 4.843 82.416 7.777 1.00 0.00 C ATOM 1005 O ASN 132 4.379 83.298 7.068 1.00 0.00 O ATOM 1006 CB ASN 132 4.141 83.494 10.055 1.00 0.00 C ATOM 1007 CG ASN 132 3.097 84.549 9.624 1.00 0.00 C ATOM 1008 OD1 ASN 132 2.961 84.953 8.488 1.00 0.00 O ATOM 1009 ND2 ASN 132 2.335 85.047 10.557 1.00 0.00 N ATOM 1010 N TYR 133 6.051 81.922 7.510 1.00 0.00 N ATOM 1011 CA TYR 133 6.681 81.998 6.171 1.00 0.00 C ATOM 1012 C TYR 133 5.608 81.678 5.105 1.00 0.00 C ATOM 1013 O TYR 133 5.397 82.524 4.252 1.00 0.00 O ATOM 1014 CB TYR 133 7.882 81.060 6.066 1.00 0.00 C ATOM 1015 CG TYR 133 8.585 81.086 4.746 1.00 0.00 C ATOM 1016 CD1 TYR 133 9.849 81.691 4.701 1.00 0.00 C ATOM 1017 CD2 TYR 133 8.051 80.477 3.588 1.00 0.00 C ATOM 1018 CE1 TYR 133 10.548 81.730 3.490 1.00 0.00 C ATOM 1019 CE2 TYR 133 8.746 80.550 2.364 1.00 0.00 C ATOM 1020 CZ TYR 133 9.985 81.219 2.312 1.00 0.00 C ATOM 1021 OH TYR 133 10.683 81.397 1.170 1.00 0.00 H ATOM 1022 N GLN 134 4.914 80.482 5.110 1.00 0.00 N ATOM 1023 CA GLN 134 3.831 80.288 4.125 1.00 0.00 C ATOM 1024 C GLN 134 2.703 81.400 4.199 1.00 0.00 C ATOM 1025 O GLN 134 2.006 81.544 3.194 1.00 0.00 O ATOM 1026 CB GLN 134 3.269 78.861 4.188 1.00 0.00 C ATOM 1027 CG GLN 134 4.361 77.793 4.043 1.00 0.00 C ATOM 1028 CD GLN 134 3.837 76.387 4.309 1.00 0.00 C ATOM 1029 OE1 GLN 134 3.370 75.697 3.424 1.00 0.00 O ATOM 1030 NE2 GLN 134 3.906 75.901 5.534 1.00 0.00 N ATOM 1031 N VAL 135 2.356 81.987 5.385 1.00 0.00 N ATOM 1032 CA VAL 135 1.306 83.032 5.405 1.00 0.00 C ATOM 1033 C VAL 135 1.609 84.279 4.526 1.00 0.00 C ATOM 1034 O VAL 135 0.737 84.690 3.744 1.00 0.00 O ATOM 1035 CB VAL 135 1.057 83.545 6.862 1.00 0.00 C ATOM 1036 CG1 VAL 135 -0.003 84.615 6.985 1.00 0.00 C ATOM 1037 CG2 VAL 135 0.618 82.346 7.768 1.00 0.00 C ATOM 1038 N VAL 136 2.581 85.093 5.013 1.00 0.00 N ATOM 1039 CA VAL 136 3.005 86.366 4.454 1.00 0.00 C ATOM 1040 C VAL 136 4.012 86.245 3.269 1.00 0.00 C ATOM 1041 O VAL 136 3.911 87.094 2.385 1.00 0.00 O ATOM 1042 CB VAL 136 3.552 87.237 5.608 1.00 0.00 C ATOM 1043 CG1 VAL 136 5.021 87.043 5.910 1.00 0.00 C ATOM 1044 CG2 VAL 136 3.277 88.742 5.271 1.00 0.00 C ATOM 1045 N CYS 137 4.696 85.117 3.044 1.00 0.00 N ATOM 1046 CA CYS 137 5.701 84.896 2.018 1.00 0.00 C ATOM 1047 C CYS 137 4.984 84.044 0.889 1.00 0.00 C ATOM 1048 O CYS 137 5.236 84.340 -0.280 1.00 0.00 O ATOM 1049 CB CYS 137 6.972 84.264 2.637 1.00 0.00 C ATOM 1050 SG CYS 137 8.276 84.206 1.329 1.00 0.00 S ATOM 1051 N LYS 138 3.969 83.182 1.207 1.00 0.00 N ATOM 1052 CA LYS 138 3.114 82.417 0.253 1.00 0.00 C ATOM 1053 C LYS 138 1.743 83.158 -0.024 1.00 0.00 C ATOM 1054 O LYS 138 0.963 82.618 -0.822 1.00 0.00 O ATOM 1055 CB LYS 138 3.013 80.919 0.551 1.00 0.00 C ATOM 1056 CG LYS 138 4.358 80.233 0.830 1.00 0.00 C ATOM 1057 CD LYS 138 5.321 80.274 -0.369 1.00 0.00 C ATOM 1058 CE LYS 138 6.723 79.843 0.070 1.00 0.00 C ATOM 1059 NZ LYS 138 7.752 80.216 -0.923 1.00 0.00 N ATOM 1060 N GLY 139 1.411 84.313 0.623 1.00 0.00 N ATOM 1061 CA GLY 139 0.244 85.098 0.360 1.00 0.00 C ATOM 1062 C GLY 139 0.375 85.558 -1.101 1.00 0.00 C ATOM 1063 O GLY 139 1.287 86.353 -1.392 1.00 0.00 O ATOM 1064 N GLU 140 -0.768 85.528 -1.759 1.00 0.00 N ATOM 1065 CA GLU 140 -0.840 85.820 -3.176 1.00 0.00 C ATOM 1066 C GLU 140 -0.949 87.307 -3.511 1.00 0.00 C ATOM 1067 O GLU 140 -1.904 87.981 -3.070 1.00 0.00 O ATOM 1068 CB GLU 140 -2.116 85.149 -3.680 1.00 0.00 C ATOM 1069 CG GLU 140 -3.147 84.435 -2.857 1.00 0.00 C ATOM 1070 CD GLU 140 -2.678 83.247 -2.002 1.00 0.00 C ATOM 1071 OE1 GLU 140 -2.192 82.206 -2.495 1.00 0.00 O ATOM 1072 OE2 GLU 140 -2.835 83.397 -0.804 1.00 0.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 41.55 75.0 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 47.01 72.6 62 100.0 62 ARMSMC BURIED . . . . . . . . 23.91 80.8 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 75.88 46.2 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 74.19 47.2 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 77.52 46.2 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 72.47 46.2 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 68.98 56.5 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 59.69 61.1 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 69.75 50.0 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 67.21 71.4 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.26 38.5 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 61.71 41.7 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 70.82 30.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 63.81 66.7 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.31 50.0 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 74.31 50.0 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 72.21 75.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 78.36 0.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.23 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.23 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0495 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.53 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.22 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.39 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.71 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.36 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.10 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 5.28 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.30 112 100.0 112 CRMSSC BURIED . . . . . . . . 4.66 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.87 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.06 240 100.0 240 CRMSALL BURIED . . . . . . . . 3.41 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.653 1.000 0.500 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 1.937 1.000 0.500 32 100.0 32 ERRCA BURIED . . . . . . . . 0.956 1.000 0.500 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.766 1.000 0.500 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.063 1.000 0.500 156 100.0 156 ERRMC BURIED . . . . . . . . 1.053 1.000 0.500 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.539 1.000 0.500 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 3.621 1.000 0.500 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 3.841 1.000 0.500 112 100.0 112 ERRSC BURIED . . . . . . . . 2.902 1.000 0.500 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.556 1.000 0.500 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.820 1.000 0.500 240 100.0 240 ERRALL BURIED . . . . . . . . 1.951 1.000 0.500 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 15 37 39 42 45 45 45 DISTCA CA (P) 33.33 82.22 86.67 93.33 100.00 45 DISTCA CA (RMS) 0.65 1.17 1.25 1.64 2.23 DISTCA ALL (N) 104 222 256 301 333 345 345 DISTALL ALL (P) 30.14 64.35 74.20 87.25 96.52 345 DISTALL ALL (RMS) 0.74 1.18 1.40 1.97 2.85 DISTALL END of the results output