####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS037_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS037_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.77 2.77 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 69 - 94 1.92 2.99 LCS_AVERAGE: 51.81 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 72 - 90 1.00 3.24 LCS_AVERAGE: 33.06 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 9 12 40 7 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 9 12 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 9 12 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 9 12 40 7 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 9 12 40 7 20 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 9 12 40 7 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 9 12 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 9 12 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 9 12 40 3 8 22 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 5 12 40 3 7 13 23 29 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 5 12 40 3 7 13 23 30 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 4 12 40 3 4 4 7 17 32 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 4 5 40 3 4 4 5 5 7 9 23 33 36 38 39 39 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 4 26 40 2 3 4 5 15 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 26 40 2 4 5 17 28 32 34 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 4 26 40 0 3 4 24 31 32 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 19 26 40 2 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 19 26 40 6 19 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 19 26 40 4 16 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 19 26 40 7 20 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 19 26 40 4 13 21 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 19 26 40 4 6 14 26 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 19 26 40 7 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 19 26 40 7 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 19 26 40 8 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 19 26 40 4 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 19 26 40 8 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 19 26 40 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 17 26 40 10 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 17 26 40 7 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 17 26 40 10 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 3 26 40 1 3 4 13 19 27 30 34 35 38 38 39 39 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 3 4 40 0 3 4 4 4 4 8 11 19 26 31 34 36 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 61.62 ( 33.06 51.81 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 23 28 29 31 34 35 37 37 38 38 39 39 40 40 40 40 40 40 40 GDT PERCENT_AT 30.00 57.50 70.00 72.50 77.50 85.00 87.50 92.50 92.50 95.00 95.00 97.50 97.50 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.33 0.65 0.84 0.95 1.17 1.59 1.69 1.90 1.90 2.12 2.12 2.35 2.35 2.77 2.77 2.77 2.77 2.77 2.77 2.77 GDT RMS_ALL_AT 2.93 2.92 2.94 2.90 2.92 2.88 2.90 2.88 2.88 2.82 2.82 2.80 2.80 2.77 2.77 2.77 2.77 2.77 2.77 2.77 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 90 D 90 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 0.953 0 0.330 0.330 1.164 88.214 88.214 LGA S 57 S 57 0.930 0 0.096 0.113 1.370 88.214 85.952 LGA C 58 C 58 0.931 0 0.065 0.780 1.845 85.952 83.016 LGA K 59 K 59 1.311 0 0.128 1.085 6.668 83.690 61.905 LGA G 60 G 60 1.522 0 0.149 0.149 1.522 79.286 79.286 LGA R 61 R 61 1.335 0 0.455 1.304 7.301 73.214 55.671 LGA C 62 C 62 0.825 0 0.657 0.802 3.081 78.095 80.714 LGA F 63 F 63 1.457 0 0.286 1.143 7.277 75.119 48.398 LGA E 64 E 64 2.468 0 0.187 0.724 3.214 61.190 61.534 LGA L 65 L 65 3.683 0 0.635 0.850 7.467 57.976 38.988 LGA Q 66 Q 66 3.605 0 0.150 0.551 5.251 38.810 36.085 LGA E 67 E 67 4.218 0 0.061 1.232 7.084 40.476 31.587 LGA V 68 V 68 6.898 0 0.418 0.543 11.526 18.452 10.612 LGA G 69 G 69 3.768 0 0.197 0.197 4.177 60.952 60.952 LGA P 70 P 70 3.882 0 0.027 0.163 7.957 39.048 28.231 LGA P 71 P 71 3.595 0 0.124 0.266 4.992 55.714 47.007 LGA D 72 D 72 1.234 3 0.563 0.584 3.104 69.286 43.750 LGA C 73 C 73 1.370 0 0.087 0.800 2.952 79.286 74.524 LGA R 74 R 74 1.659 0 0.113 1.348 9.071 77.143 45.108 LGA C 75 C 75 1.132 0 0.493 0.511 2.354 88.333 80.476 LGA D 76 D 76 2.156 0 0.058 0.856 4.477 66.786 58.631 LGA N 77 N 77 2.709 0 0.111 0.359 5.688 65.000 47.798 LGA L 78 L 78 0.620 0 0.199 0.522 4.464 90.476 70.655 LGA C 79 C 79 0.159 0 0.089 0.735 3.574 97.619 88.968 LGA K 80 K 80 0.703 0 0.047 0.862 1.881 90.476 86.561 LGA S 81 S 81 0.819 0 0.059 0.651 1.802 90.476 87.540 LGA Y 82 Y 82 1.252 0 0.050 0.705 2.342 81.429 75.794 LGA S 83 S 83 0.838 0 0.316 0.288 1.530 90.476 86.032 LGA S 84 S 84 0.481 0 0.037 0.610 2.036 95.238 89.365 LGA C 85 C 85 0.573 0 0.068 0.813 3.034 95.238 86.905 LGA C 86 C 86 0.681 0 0.113 0.195 1.068 88.214 87.460 LGA H 87 H 87 0.786 0 0.092 1.351 7.383 92.857 57.571 LGA D 88 D 88 0.587 0 0.167 1.170 4.437 95.238 79.762 LGA F 89 F 89 0.637 0 0.048 0.194 2.278 90.476 83.290 LGA D 90 D 90 0.669 0 0.088 0.652 1.914 88.214 84.940 LGA E 91 E 91 1.229 0 0.112 0.737 1.674 83.690 83.492 LGA L 92 L 92 1.190 0 0.071 1.386 4.348 81.429 68.333 LGA C 93 C 93 0.999 0 0.422 0.399 2.123 79.524 80.159 LGA L 94 L 94 6.302 0 0.461 1.300 10.840 12.857 16.607 LGA K 95 K 95 10.534 0 0.076 0.863 13.906 1.190 0.582 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.765 2.784 3.685 72.884 64.061 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 37 1.90 80.625 75.979 1.848 LGA_LOCAL RMSD: 1.903 Number of atoms: 37 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.882 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.765 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.703939 * X + 0.220421 * Y + -0.675192 * Z + 168.811737 Y_new = 0.364724 * X + -0.703537 * Y + -0.609927 * Z + 159.215714 Z_new = -0.609464 * X + -0.675611 * Y + 0.414854 * Z + 75.390038 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 2.663555 0.655384 -1.020115 [DEG: 152.6104 37.5507 -58.4483 ] ZXZ: -0.836140 1.143014 -2.407623 [DEG: -47.9073 65.4899 -137.9466 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS037_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS037_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 37 1.90 75.979 2.77 REMARK ---------------------------------------------------------- MOLECULE T0543TS037_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REFINED REMARK PARENT N/A ATOM 422 N GLY 56 35.286 71.561 18.878 1.00 0.00 N ATOM 423 CA GLY 56 35.419 72.746 19.669 1.00 0.00 C ATOM 424 C GLY 56 34.243 73.768 19.507 1.00 0.00 C ATOM 425 O GLY 56 33.871 74.325 20.552 1.00 0.00 O ATOM 426 N SER 57 33.553 73.881 18.334 1.00 0.00 N ATOM 427 CA SER 57 32.472 74.856 18.231 1.00 0.00 C ATOM 428 C SER 57 31.195 74.249 17.556 1.00 0.00 C ATOM 429 O SER 57 31.305 73.924 16.354 1.00 0.00 O ATOM 430 CB SER 57 32.997 76.169 17.607 1.00 0.00 C ATOM 431 OG SER 57 31.988 77.183 17.449 1.00 0.00 O ATOM 432 N CYS 58 30.103 74.838 17.950 1.00 0.00 N ATOM 433 CA CYS 58 28.666 74.563 17.644 1.00 0.00 C ATOM 434 C CYS 58 28.144 75.349 16.391 1.00 0.00 C ATOM 435 O CYS 58 26.985 75.146 15.943 1.00 0.00 O ATOM 436 CB CYS 58 27.924 75.237 18.743 1.00 0.00 C ATOM 437 SG CYS 58 26.089 74.836 18.689 1.00 0.00 S ATOM 438 N LYS 59 29.052 75.811 15.608 1.00 0.00 N ATOM 439 CA LYS 59 28.684 76.675 14.562 1.00 0.00 C ATOM 440 C LYS 59 28.616 75.823 13.238 1.00 0.00 C ATOM 441 O LYS 59 29.290 74.791 13.191 1.00 0.00 O ATOM 442 CB LYS 59 29.660 77.890 14.684 1.00 0.00 C ATOM 443 CG LYS 59 29.403 78.968 13.610 1.00 0.00 C ATOM 444 CD LYS 59 30.433 80.080 13.879 1.00 0.00 C ATOM 445 CE LYS 59 30.273 80.699 15.259 1.00 0.00 C ATOM 446 NZ LYS 59 28.845 81.164 15.462 1.00 0.00 N ATOM 447 N GLY 60 27.405 75.830 12.701 1.00 0.00 N ATOM 448 CA GLY 60 27.131 74.994 11.517 1.00 0.00 C ATOM 449 C GLY 60 26.851 73.532 12.047 1.00 0.00 C ATOM 450 O GLY 60 26.291 72.757 11.275 1.00 0.00 O ATOM 451 N ARG 61 27.057 73.239 13.359 1.00 0.00 N ATOM 452 CA ARG 61 26.741 71.997 14.021 1.00 0.00 C ATOM 453 C ARG 61 25.620 72.438 14.931 1.00 0.00 C ATOM 454 O ARG 61 25.882 72.780 16.127 1.00 0.00 O ATOM 455 CB ARG 61 27.969 71.848 14.880 1.00 0.00 C ATOM 456 CG ARG 61 29.282 71.515 14.202 1.00 0.00 C ATOM 457 CD ARG 61 30.478 71.585 15.071 1.00 0.00 C ATOM 458 NE ARG 61 31.695 71.347 14.294 1.00 0.00 N ATOM 459 CZ ARG 61 32.309 72.345 13.650 1.00 0.00 C ATOM 460 NH1 ARG 61 31.920 73.607 13.633 1.00 0.00 H ATOM 461 NH2 ARG 61 33.423 71.951 13.000 1.00 0.00 H ATOM 462 N CYS 62 24.404 72.326 14.486 1.00 0.00 N ATOM 463 CA CYS 62 23.416 72.879 15.312 1.00 0.00 C ATOM 464 C CYS 62 22.691 71.864 16.236 1.00 0.00 C ATOM 465 O CYS 62 22.221 72.289 17.294 1.00 0.00 O ATOM 466 CB CYS 62 22.479 73.763 14.502 1.00 0.00 C ATOM 467 SG CYS 62 22.739 75.513 15.075 1.00 0.00 S ATOM 468 N PHE 63 22.230 70.733 15.665 1.00 0.00 N ATOM 469 CA PHE 63 21.627 69.644 16.363 1.00 0.00 C ATOM 470 C PHE 63 22.321 68.292 16.007 1.00 0.00 C ATOM 471 O PHE 63 21.822 67.515 15.182 1.00 0.00 O ATOM 472 CB PHE 63 20.153 69.619 16.223 1.00 0.00 C ATOM 473 CG PHE 63 19.432 68.575 17.028 1.00 0.00 C ATOM 474 CD1 PHE 63 18.446 68.946 17.927 1.00 0.00 C ATOM 475 CD2 PHE 63 19.751 67.230 16.916 1.00 0.00 C ATOM 476 CE1 PHE 63 17.797 68.000 18.698 1.00 0.00 C ATOM 477 CE2 PHE 63 19.101 66.284 17.685 1.00 0.00 C ATOM 478 CZ PHE 63 18.129 66.664 18.573 1.00 0.00 C ATOM 479 N GLU 64 23.299 67.980 16.856 1.00 0.00 N ATOM 480 CA GLU 64 24.002 66.741 16.786 1.00 0.00 C ATOM 481 C GLU 64 23.576 65.938 18.012 1.00 0.00 C ATOM 482 O GLU 64 24.042 66.195 19.126 1.00 0.00 O ATOM 483 CB GLU 64 25.518 67.040 16.754 1.00 0.00 C ATOM 484 CG GLU 64 26.363 65.765 16.620 1.00 0.00 C ATOM 485 CD GLU 64 27.841 66.078 16.493 1.00 0.00 C ATOM 486 OE1 GLU 64 28.206 67.272 16.565 1.00 0.00 O ATOM 487 OE2 GLU 64 28.637 65.129 16.325 1.00 0.00 O ATOM 488 N LEU 65 22.657 65.030 17.770 1.00 0.00 N ATOM 489 CA LEU 65 22.234 64.190 18.881 1.00 0.00 C ATOM 490 C LEU 65 22.995 62.849 18.771 1.00 0.00 C ATOM 491 O LEU 65 22.789 62.081 17.807 1.00 0.00 O ATOM 492 CB LEU 65 20.720 63.971 18.786 1.00 0.00 C ATOM 493 CG LEU 65 20.055 63.318 20.012 1.00 0.00 C ATOM 494 CD1 LEU 65 18.550 63.539 19.994 1.00 0.00 C ATOM 495 CD2 LEU 65 20.371 61.830 20.053 1.00 0.00 C ATOM 496 N GLN 66 24.097 62.835 19.549 1.00 0.00 N ATOM 497 CA GLN 66 24.924 61.670 19.525 1.00 0.00 C ATOM 498 C GLN 66 25.127 61.129 20.958 1.00 0.00 C ATOM 499 O GLN 66 25.794 61.742 21.792 1.00 0.00 O ATOM 500 CB GLN 66 26.225 61.861 18.741 1.00 0.00 C ATOM 501 CG GLN 66 27.112 60.599 18.619 1.00 0.00 C ATOM 502 CD GLN 66 28.401 60.728 17.797 1.00 0.00 C ATOM 503 OE1 GLN 66 28.506 61.481 16.819 1.00 0.00 O ATOM 504 NE2 GLN 66 29.439 59.972 18.125 1.00 0.00 N ATOM 505 N GLU 67 24.853 59.839 21.040 1.00 0.00 N ATOM 506 CA GLU 67 25.001 59.016 22.221 1.00 0.00 C ATOM 507 C GLU 67 26.314 58.199 22.101 1.00 0.00 C ATOM 508 O GLU 67 26.530 57.501 21.094 1.00 0.00 O ATOM 509 CB GLU 67 23.767 58.119 22.360 1.00 0.00 C ATOM 510 CG GLU 67 23.798 57.251 23.622 1.00 0.00 C ATOM 511 CD GLU 67 22.541 56.415 23.773 1.00 0.00 C ATOM 512 OE1 GLU 67 21.620 56.572 22.942 1.00 0.00 O ATOM 513 OE2 GLU 67 22.474 55.608 24.723 1.00 0.00 O ATOM 514 N VAL 68 27.097 58.156 23.192 1.00 0.00 N ATOM 515 CA VAL 68 28.350 57.390 23.312 1.00 0.00 C ATOM 516 C VAL 68 29.468 57.772 22.253 1.00 0.00 C ATOM 517 O VAL 68 29.586 57.005 21.280 1.00 0.00 O ATOM 518 CB VAL 68 28.061 55.886 23.249 1.00 0.00 C ATOM 519 CG1 VAL 68 29.355 55.078 23.430 1.00 0.00 C ATOM 520 CG2 VAL 68 27.034 55.446 24.232 1.00 0.00 C ATOM 521 N GLY 69 30.042 59.004 22.182 1.00 0.00 N ATOM 522 CA GLY 69 31.144 59.434 21.263 1.00 0.00 C ATOM 523 C GLY 69 31.779 60.763 21.842 1.00 0.00 C ATOM 524 O GLY 69 31.051 61.412 22.619 1.00 0.00 O ATOM 525 N PRO 70 32.984 61.295 21.468 1.00 0.00 N ATOM 526 CA PRO 70 33.450 62.441 22.141 1.00 0.00 C ATOM 527 C PRO 70 32.422 63.593 22.173 1.00 0.00 C ATOM 528 O PRO 70 31.636 63.792 21.231 1.00 0.00 O ATOM 529 CB PRO 70 34.792 62.931 21.593 1.00 0.00 C ATOM 530 CG PRO 70 35.076 61.903 20.449 1.00 0.00 C ATOM 531 CD PRO 70 33.856 60.996 20.267 1.00 0.00 C ATOM 532 N PRO 71 32.120 63.821 23.489 1.00 0.00 N ATOM 533 CA PRO 71 31.268 64.896 23.898 1.00 0.00 C ATOM 534 C PRO 71 32.095 66.215 23.778 1.00 0.00 C ATOM 535 O PRO 71 31.994 67.014 24.735 1.00 0.00 O ATOM 536 CB PRO 71 30.741 64.782 25.380 1.00 0.00 C ATOM 537 CG PRO 71 31.415 63.393 25.766 1.00 0.00 C ATOM 538 CD PRO 71 32.250 62.814 24.652 1.00 0.00 C ATOM 539 N ASP 72 33.143 66.282 22.971 1.00 0.00 N ATOM 540 CA ASP 72 33.788 67.592 22.801 1.00 0.00 C ATOM 541 C ASP 72 32.674 68.652 22.832 1.00 0.00 C ATOM 542 O ASP 72 32.737 69.547 23.688 1.00 0.00 O ATOM 543 CB ASP 72 34.602 67.606 21.502 1.00 0.00 C ATOM 544 CG ASP 72 35.818 66.720 21.567 1.00 0.00 C ATOM 545 OD1 ASP 72 36.202 66.316 22.684 1.00 0.00 O ATOM 546 OD2 ASP 72 36.393 66.423 20.499 1.00 0.00 O ATOM 547 N CYS 73 31.549 68.316 22.168 1.00 0.00 N ATOM 548 CA CYS 73 30.340 69.126 22.041 1.00 0.00 C ATOM 549 C CYS 73 29.309 68.548 21.037 1.00 0.00 C ATOM 550 O CYS 73 29.625 67.917 20.068 1.00 0.00 O ATOM 551 CB CYS 73 30.620 70.665 21.871 1.00 0.00 C ATOM 552 SG CYS 73 29.085 71.478 22.362 1.00 0.00 S ATOM 553 N ARG 74 28.040 68.888 21.320 1.00 0.00 N ATOM 554 CA ARG 74 26.902 68.570 20.558 1.00 0.00 C ATOM 555 C ARG 74 25.938 69.701 20.731 1.00 0.00 C ATOM 556 O ARG 74 25.648 70.100 21.901 1.00 0.00 O ATOM 557 CB ARG 74 26.387 67.280 21.157 1.00 0.00 C ATOM 558 CG ARG 74 27.202 66.057 20.883 1.00 0.00 C ATOM 559 CD ARG 74 27.267 65.703 19.405 1.00 0.00 C ATOM 560 NE ARG 74 28.086 64.518 19.162 1.00 0.00 N ATOM 561 CZ ARG 74 29.391 64.553 18.912 1.00 0.00 C ATOM 562 NH1 ARG 74 30.055 63.424 18.701 1.00 0.00 H ATOM 563 NH2 ARG 74 30.031 65.714 18.871 1.00 0.00 H ATOM 564 N CYS 75 25.642 70.457 19.736 1.00 0.00 N ATOM 565 CA CYS 75 24.633 71.414 19.900 1.00 0.00 C ATOM 566 C CYS 75 23.303 70.741 19.801 1.00 0.00 C ATOM 567 O CYS 75 23.007 70.135 18.770 1.00 0.00 O ATOM 568 CB CYS 75 24.853 72.836 19.319 1.00 0.00 C ATOM 569 SG CYS 75 26.371 73.492 19.841 1.00 0.00 S ATOM 570 N ASP 76 22.615 70.706 20.915 1.00 0.00 N ATOM 571 CA ASP 76 21.357 70.012 21.033 1.00 0.00 C ATOM 572 C ASP 76 20.628 70.325 22.348 1.00 0.00 C ATOM 573 O ASP 76 21.301 70.715 23.320 1.00 0.00 O ATOM 574 CB ASP 76 21.739 68.497 21.112 1.00 0.00 C ATOM 575 CG ASP 76 20.554 67.591 20.656 1.00 0.00 C ATOM 576 OD1 ASP 76 19.591 67.484 21.447 1.00 0.00 O ATOM 577 OD2 ASP 76 20.603 67.013 19.552 1.00 0.00 O ATOM 578 N ASN 77 19.305 70.172 22.449 1.00 0.00 N ATOM 579 CA ASN 77 18.704 70.380 23.738 1.00 0.00 C ATOM 580 C ASN 77 19.267 69.289 24.682 1.00 0.00 C ATOM 581 O ASN 77 19.092 69.490 25.897 1.00 0.00 O ATOM 582 CB ASN 77 17.150 70.321 23.748 1.00 0.00 C ATOM 583 CG ASN 77 16.588 71.579 23.081 1.00 0.00 C ATOM 584 OD1 ASN 77 17.226 72.630 23.052 1.00 0.00 O ATOM 585 ND2 ASN 77 15.362 71.468 22.582 1.00 0.00 N ATOM 586 N LEU 78 19.312 68.014 24.234 1.00 0.00 N ATOM 587 CA LEU 78 19.920 66.902 25.001 1.00 0.00 C ATOM 588 C LEU 78 21.229 67.464 25.667 1.00 0.00 C ATOM 589 O LEU 78 21.549 66.938 26.726 1.00 0.00 O ATOM 590 CB LEU 78 20.158 65.686 24.096 1.00 0.00 C ATOM 591 CG LEU 78 20.790 64.484 24.793 1.00 0.00 C ATOM 592 CD1 LEU 78 19.882 63.970 25.898 1.00 0.00 C ATOM 593 CD2 LEU 78 21.062 63.386 23.775 1.00 0.00 C ATOM 594 N CYS 79 22.098 68.249 24.967 1.00 0.00 N ATOM 595 CA CYS 79 23.258 68.871 25.583 1.00 0.00 C ATOM 596 C CYS 79 22.936 69.925 26.629 1.00 0.00 C ATOM 597 O CYS 79 23.839 70.182 27.445 1.00 0.00 O ATOM 598 CB CYS 79 24.364 69.200 24.637 1.00 0.00 C ATOM 599 SG CYS 79 25.060 67.898 23.649 1.00 0.00 S ATOM 600 N LYS 80 21.824 70.658 26.546 1.00 0.00 N ATOM 601 CA LYS 80 21.463 71.593 27.605 1.00 0.00 C ATOM 602 C LYS 80 21.196 70.725 28.888 1.00 0.00 C ATOM 603 O LYS 80 21.674 71.120 29.957 1.00 0.00 O ATOM 604 CB LYS 80 20.280 72.469 27.160 1.00 0.00 C ATOM 605 CG LYS 80 19.884 73.480 28.235 1.00 0.00 C ATOM 606 CD LYS 80 21.019 74.454 28.507 1.00 0.00 C ATOM 607 CE LYS 80 21.304 75.323 27.291 1.00 0.00 C ATOM 608 NZ LYS 80 22.317 76.371 27.587 1.00 0.00 N ATOM 609 N SER 81 20.299 69.698 28.834 1.00 0.00 N ATOM 610 CA SER 81 20.008 68.747 29.900 1.00 0.00 C ATOM 611 C SER 81 21.343 68.090 30.406 1.00 0.00 C ATOM 612 O SER 81 21.525 68.085 31.625 1.00 0.00 O ATOM 613 CB SER 81 18.967 67.743 29.378 1.00 0.00 C ATOM 614 OG SER 81 18.621 66.672 30.253 1.00 0.00 O ATOM 615 N TYR 82 22.201 67.476 29.546 1.00 0.00 N ATOM 616 CA TYR 82 23.502 66.900 29.929 1.00 0.00 C ATOM 617 C TYR 82 24.612 67.959 30.306 1.00 0.00 C ATOM 618 O TYR 82 25.636 67.513 30.839 1.00 0.00 O ATOM 619 CB TYR 82 24.042 66.009 28.803 1.00 0.00 C ATOM 620 CG TYR 82 23.267 64.728 28.623 1.00 0.00 C ATOM 621 CD1 TYR 82 22.360 64.304 29.581 1.00 0.00 C ATOM 622 CD2 TYR 82 23.447 63.946 27.489 1.00 0.00 C ATOM 623 CE1 TYR 82 21.647 63.131 29.423 1.00 0.00 C ATOM 624 CE2 TYR 82 22.743 62.768 27.313 1.00 0.00 C ATOM 625 CZ TYR 82 21.836 62.366 28.294 1.00 0.00 C ATOM 626 OH TYR 82 21.127 61.197 28.133 1.00 0.00 H ATOM 627 N SER 83 24.373 69.288 30.247 1.00 0.00 N ATOM 628 CA SER 83 25.351 70.385 30.499 1.00 0.00 C ATOM 629 C SER 83 26.705 70.261 29.699 1.00 0.00 C ATOM 630 O SER 83 27.650 70.986 30.050 1.00 0.00 O ATOM 631 CB SER 83 25.672 70.427 32.003 1.00 0.00 C ATOM 632 OG SER 83 24.584 70.676 32.891 1.00 0.00 O ATOM 633 N SER 84 26.722 69.675 28.489 1.00 0.00 N ATOM 634 CA SER 84 27.893 69.566 27.609 1.00 0.00 C ATOM 635 C SER 84 27.758 70.487 26.340 1.00 0.00 C ATOM 636 O SER 84 28.631 70.383 25.487 1.00 0.00 O ATOM 637 CB SER 84 28.011 68.118 27.141 1.00 0.00 C ATOM 638 OG SER 84 28.248 67.138 28.124 1.00 0.00 O ATOM 639 N CYS 85 26.851 71.465 26.330 1.00 0.00 N ATOM 640 CA CYS 85 26.652 72.442 25.279 1.00 0.00 C ATOM 641 C CYS 85 27.971 73.264 25.049 1.00 0.00 C ATOM 642 O CYS 85 28.796 73.496 25.967 1.00 0.00 O ATOM 643 CB CYS 85 25.476 73.315 25.766 1.00 0.00 C ATOM 644 SG CYS 85 25.855 74.419 27.139 1.00 0.00 S ATOM 645 N CYS 86 28.133 73.675 23.830 1.00 0.00 N ATOM 646 CA CYS 86 29.288 74.355 23.332 1.00 0.00 C ATOM 647 C CYS 86 29.197 75.831 23.907 1.00 0.00 C ATOM 648 O CYS 86 28.222 76.155 24.642 1.00 0.00 O ATOM 649 CB CYS 86 28.980 74.334 21.851 1.00 0.00 C ATOM 650 SG CYS 86 29.314 72.814 20.877 1.00 0.00 S ATOM 651 N HIS 87 30.248 76.607 23.906 1.00 0.00 N ATOM 652 CA HIS 87 30.052 78.005 24.326 1.00 0.00 C ATOM 653 C HIS 87 29.197 78.669 23.171 1.00 0.00 C ATOM 654 O HIS 87 28.280 79.425 23.532 1.00 0.00 O ATOM 655 CB HIS 87 31.368 78.726 24.582 1.00 0.00 C ATOM 656 CG HIS 87 32.073 78.236 25.790 1.00 0.00 C ATOM 657 ND1 HIS 87 31.558 78.382 27.059 1.00 0.00 N ATOM 658 CD2 HIS 87 33.339 77.567 26.060 1.00 0.00 C ATOM 659 CE1 HIS 87 32.420 77.859 27.946 1.00 0.00 C ATOM 660 NE2 HIS 87 33.492 77.367 27.354 1.00 0.00 N ATOM 661 N ASP 88 29.629 78.628 21.872 1.00 0.00 N ATOM 662 CA ASP 88 28.838 79.133 20.707 1.00 0.00 C ATOM 663 C ASP 88 27.485 78.326 20.529 1.00 0.00 C ATOM 664 O ASP 88 26.642 78.772 19.753 1.00 0.00 O ATOM 665 CB ASP 88 29.712 79.019 19.459 1.00 0.00 C ATOM 666 CG ASP 88 30.870 79.996 19.464 1.00 0.00 C ATOM 667 OD1 ASP 88 30.846 80.935 20.286 1.00 0.00 O ATOM 668 OD2 ASP 88 31.804 79.819 18.652 1.00 0.00 O ATOM 669 N PHE 89 27.257 77.338 21.377 1.00 0.00 N ATOM 670 CA PHE 89 26.057 76.535 21.461 1.00 0.00 C ATOM 671 C PHE 89 24.752 77.345 21.474 1.00 0.00 C ATOM 672 O PHE 89 23.987 77.302 20.499 1.00 0.00 O ATOM 673 CB PHE 89 26.102 75.725 22.741 1.00 0.00 C ATOM 674 CG PHE 89 24.947 74.773 22.934 1.00 0.00 C ATOM 675 CD1 PHE 89 25.041 73.432 22.595 1.00 0.00 C ATOM 676 CD2 PHE 89 23.747 75.242 23.442 1.00 0.00 C ATOM 677 CE1 PHE 89 23.964 72.583 22.762 1.00 0.00 C ATOM 678 CE2 PHE 89 22.670 74.394 23.608 1.00 0.00 C ATOM 679 CZ PHE 89 22.774 73.069 23.271 1.00 0.00 C ATOM 680 N ASP 90 24.645 78.195 22.480 1.00 0.00 N ATOM 681 CA ASP 90 23.533 79.037 22.766 1.00 0.00 C ATOM 682 C ASP 90 23.127 79.996 21.612 1.00 0.00 C ATOM 683 O ASP 90 21.945 79.968 21.269 1.00 0.00 O ATOM 684 CB ASP 90 23.889 79.851 24.017 1.00 0.00 C ATOM 685 CG ASP 90 23.889 79.038 25.280 1.00 0.00 C ATOM 686 OD1 ASP 90 23.389 77.894 25.244 1.00 0.00 O ATOM 687 OD2 ASP 90 24.409 79.525 26.305 1.00 0.00 O ATOM 688 N GLU 91 24.047 80.662 20.921 1.00 0.00 N ATOM 689 CA GLU 91 23.729 81.649 19.902 1.00 0.00 C ATOM 690 C GLU 91 23.191 81.070 18.590 1.00 0.00 C ATOM 691 O GLU 91 22.178 81.588 18.132 1.00 0.00 O ATOM 692 CB GLU 91 24.997 82.450 19.625 1.00 0.00 C ATOM 693 CG GLU 91 25.440 83.360 20.752 1.00 0.00 C ATOM 694 CD GLU 91 26.722 84.110 20.441 1.00 0.00 C ATOM 695 OE1 GLU 91 27.363 83.791 19.417 1.00 0.00 O ATOM 696 OE2 GLU 91 27.086 85.014 21.222 1.00 0.00 O ATOM 697 N LEU 92 23.732 79.993 18.079 1.00 0.00 N ATOM 698 CA LEU 92 23.317 79.484 16.798 1.00 0.00 C ATOM 699 C LEU 92 22.419 78.282 16.850 1.00 0.00 C ATOM 700 O LEU 92 21.935 78.060 15.745 1.00 0.00 O ATOM 701 CB LEU 92 24.605 78.964 16.150 1.00 0.00 C ATOM 702 CG LEU 92 24.459 78.359 14.711 1.00 0.00 C ATOM 703 CD1 LEU 92 23.842 79.352 13.737 1.00 0.00 C ATOM 704 CD2 LEU 92 25.790 77.851 14.177 1.00 0.00 C ATOM 705 N CYS 93 21.601 77.932 17.887 1.00 0.00 N ATOM 706 CA CYS 93 21.111 76.554 17.761 1.00 0.00 C ATOM 707 C CYS 93 19.739 75.979 18.098 1.00 0.00 C ATOM 708 O CYS 93 18.728 76.611 17.771 1.00 0.00 O ATOM 709 CB CYS 93 22.307 75.565 17.859 1.00 0.00 C ATOM 710 SG CYS 93 23.699 75.905 16.944 1.00 0.00 S ATOM 711 N LEU 94 19.874 74.637 17.860 1.00 0.00 N ATOM 712 CA LEU 94 18.964 73.495 18.127 1.00 0.00 C ATOM 713 C LEU 94 18.290 72.756 16.940 1.00 0.00 C ATOM 714 O LEU 94 18.405 71.530 16.947 1.00 0.00 O ATOM 715 CB LEU 94 17.845 74.003 19.061 1.00 0.00 C ATOM 716 CG LEU 94 16.841 72.973 19.577 1.00 0.00 C ATOM 717 CD1 LEU 94 17.571 71.907 20.390 1.00 0.00 C ATOM 718 CD2 LEU 94 15.818 73.669 20.432 1.00 0.00 C ATOM 719 N LYS 95 17.320 73.292 16.181 1.00 0.00 N ATOM 720 CA LYS 95 16.686 72.476 15.166 1.00 0.00 C ATOM 721 C LYS 95 17.695 71.728 14.233 1.00 0.00 C ATOM 722 O LYS 95 18.530 72.417 13.653 1.00 0.00 O ATOM 723 CB LYS 95 15.778 73.411 14.337 1.00 0.00 C ATOM 724 CG LYS 95 14.586 73.982 15.119 1.00 0.00 C ATOM 725 CD LYS 95 13.761 75.059 14.393 1.00 0.00 C ATOM 726 CE LYS 95 12.775 75.605 15.430 1.00 0.00 C ATOM 727 NZ LYS 95 11.914 76.641 14.888 1.00 0.00 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 62.20 57.7 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 62.26 62.5 56 100.0 56 ARMSMC BURIED . . . . . . . . 62.06 45.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 86.31 41.7 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 87.52 40.0 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 87.49 36.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 83.55 54.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.09 52.2 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 66.22 58.8 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 75.22 44.4 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 59.49 80.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 98.96 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 100.17 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 100.20 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 94.51 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 93.79 20.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 93.79 20.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 93.90 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 93.33 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.77 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.77 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0691 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.88 29 100.0 29 CRMSCA BURIED . . . . . . . . 2.45 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.88 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 3.00 142 100.0 142 CRMSMC BURIED . . . . . . . . 2.54 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.52 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 4.23 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.53 103 100.0 103 CRMSSC BURIED . . . . . . . . 4.51 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.71 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.78 219 100.0 219 CRMSALL BURIED . . . . . . . . 3.53 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.077 1.000 0.500 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 2.171 1.000 0.500 29 100.0 29 ERRCA BURIED . . . . . . . . 1.830 1.000 0.500 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.137 1.000 0.500 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 2.226 1.000 0.500 142 100.0 142 ERRMC BURIED . . . . . . . . 1.906 1.000 0.500 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.702 1.000 0.500 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 3.404 1.000 0.500 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 3.771 1.000 0.500 103 100.0 103 ERRSC BURIED . . . . . . . . 3.526 1.000 0.500 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.832 1.000 0.500 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 2.915 1.000 0.500 219 100.0 219 ERRALL BURIED . . . . . . . . 2.616 1.000 0.500 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 13 26 30 37 40 40 40 DISTCA CA (P) 32.50 65.00 75.00 92.50 100.00 40 DISTCA CA (RMS) 0.67 1.12 1.37 2.05 2.77 DISTCA ALL (N) 65 149 200 250 297 303 303 DISTALL ALL (P) 21.45 49.17 66.01 82.51 98.02 303 DISTALL ALL (RMS) 0.70 1.20 1.61 2.24 3.40 DISTALL END of the results output