####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS028_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS028_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 62 - 72 4.70 46.92 LCS_AVERAGE: 25.44 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 65 - 71 1.70 44.04 LCS_AVERAGE: 13.94 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 56 - 60 0.87 66.01 LONGEST_CONTINUOUS_SEGMENT: 5 65 - 69 0.34 44.11 LONGEST_CONTINUOUS_SEGMENT: 5 66 - 70 0.89 41.94 LCS_AVERAGE: 10.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 5 5 9 3 4 5 5 5 5 5 5 6 6 8 8 8 9 9 9 10 10 10 10 LCS_GDT S 57 S 57 5 5 10 3 4 5 5 5 5 5 5 6 7 8 8 9 9 9 10 10 10 10 10 LCS_GDT C 58 C 58 5 5 10 3 4 5 5 5 5 5 5 6 7 8 8 9 9 9 10 10 10 10 10 LCS_GDT K 59 K 59 5 5 10 0 4 5 5 5 5 7 7 7 8 8 8 9 9 9 10 10 12 12 12 LCS_GDT G 60 G 60 5 5 10 2 3 5 5 5 5 7 7 7 8 8 8 9 10 11 11 11 12 12 12 LCS_GDT R 61 R 61 3 5 10 3 3 4 4 5 5 7 7 7 8 8 8 9 10 11 11 11 12 12 12 LCS_GDT C 62 C 62 4 5 11 3 3 4 5 5 5 7 7 7 8 8 10 10 10 11 11 11 12 12 12 LCS_GDT F 63 F 63 4 5 11 3 4 4 5 5 6 7 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT E 64 E 64 4 6 11 3 4 4 5 6 6 7 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT L 65 L 65 5 7 11 5 5 5 6 7 7 7 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT Q 66 Q 66 5 7 11 5 5 5 6 7 7 7 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT E 67 E 67 5 7 11 5 5 5 6 7 7 7 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT V 68 V 68 5 7 11 5 5 5 6 7 7 7 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT G 69 G 69 5 7 11 5 5 5 6 7 7 7 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT P 70 P 70 5 7 11 4 4 5 6 7 7 8 8 8 9 9 10 10 10 11 11 11 12 12 12 LCS_GDT P 71 P 71 4 7 11 4 4 5 5 7 7 8 8 8 9 9 10 10 10 10 11 11 12 12 12 LCS_GDT D 72 D 72 4 6 11 4 4 5 5 6 6 8 8 8 8 9 9 9 10 10 10 11 11 12 12 LCS_GDT C 73 C 73 4 6 10 4 4 5 5 6 6 8 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT R 74 R 74 4 6 10 3 4 5 5 6 6 8 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT C 75 C 75 4 6 10 3 4 5 5 6 6 8 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT D 76 D 76 4 6 10 3 4 5 5 6 6 8 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT N 77 N 77 4 6 10 3 4 5 5 6 6 8 8 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT L 78 L 78 4 4 10 3 3 4 4 4 5 7 7 7 7 8 8 9 10 10 10 10 11 12 12 LCS_GDT C 79 C 79 3 4 9 3 3 3 3 4 5 5 6 7 7 8 8 9 10 10 10 10 11 12 12 LCS_GDT K 80 K 80 3 4 9 1 3 3 3 4 5 5 6 7 7 8 8 9 10 10 10 10 11 12 12 LCS_GDT S 81 S 81 4 6 9 0 4 4 4 4 6 7 7 8 8 8 8 8 10 10 10 10 11 11 12 LCS_GDT Y 82 Y 82 4 6 10 0 4 4 4 6 6 7 7 8 8 8 8 9 9 11 11 11 11 12 12 LCS_GDT S 83 S 83 4 6 10 3 4 4 4 4 6 7 7 8 8 8 8 9 10 11 11 11 12 12 13 LCS_GDT S 84 S 84 4 6 10 3 4 4 5 6 6 7 7 8 8 8 8 9 10 11 11 12 12 12 13 LCS_GDT C 85 C 85 4 6 10 3 4 4 5 6 6 7 7 8 8 8 8 9 10 11 11 12 12 12 13 LCS_GDT C 86 C 86 4 6 10 3 4 4 5 6 6 7 7 8 8 8 8 9 10 11 11 12 12 12 13 LCS_GDT H 87 H 87 4 6 10 3 4 4 5 6 6 7 7 8 8 9 9 9 10 11 11 12 12 12 13 LCS_GDT D 88 D 88 3 5 10 3 3 3 5 6 6 6 7 8 8 9 9 9 10 11 11 12 12 12 13 LCS_GDT F 89 F 89 3 4 10 3 3 3 3 3 4 5 5 7 8 9 9 9 10 11 11 12 12 12 13 LCS_GDT D 90 D 90 3 4 10 3 3 3 3 3 4 5 5 7 8 9 9 9 10 11 11 12 12 12 13 LCS_GDT E 91 E 91 4 5 10 3 4 4 4 4 5 5 5 7 8 9 9 9 10 11 11 12 12 12 13 LCS_GDT L 92 L 92 4 5 10 3 4 4 4 4 5 5 5 7 8 9 9 9 10 11 11 12 12 12 13 LCS_GDT C 93 C 93 4 5 10 3 4 4 4 4 5 5 5 6 8 9 9 9 9 10 10 12 12 12 13 LCS_GDT L 94 L 94 4 5 10 3 4 4 4 4 5 5 5 7 8 9 9 9 9 10 11 12 12 12 13 LCS_GDT K 95 K 95 3 5 10 0 3 3 3 4 5 5 5 6 8 9 9 9 9 10 11 12 12 12 13 LCS_AVERAGE LCS_A: 16.54 ( 10.25 13.94 25.44 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 5 5 5 6 7 7 8 8 8 9 9 10 10 10 11 11 12 12 12 13 GDT PERCENT_AT 12.50 12.50 12.50 15.00 17.50 17.50 20.00 20.00 20.00 22.50 22.50 25.00 25.00 25.00 27.50 27.50 30.00 30.00 30.00 32.50 GDT RMS_LOCAL 0.34 0.34 0.34 1.13 1.70 1.70 2.65 2.45 2.45 3.26 3.26 3.99 3.99 3.99 5.34 5.34 5.79 5.79 5.79 6.26 GDT RMS_ALL_AT 44.11 44.11 44.11 42.71 44.04 44.04 35.43 45.72 45.72 46.43 46.43 47.81 47.81 47.81 48.98 48.98 51.85 51.85 51.85 51.62 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 67 E 67 # possible swapping detected: D 76 D 76 # possible swapping detected: F 89 F 89 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 41.417 0 0.570 0.570 42.282 0.000 0.000 LGA S 57 S 57 35.055 0 0.159 0.576 36.997 0.000 0.000 LGA C 58 C 58 27.727 0 0.607 0.571 30.433 0.000 0.000 LGA K 59 K 59 24.944 0 0.093 1.029 29.463 0.000 0.000 LGA G 60 G 60 18.517 0 0.574 0.574 20.696 0.000 0.000 LGA R 61 R 61 15.263 0 0.675 1.590 21.967 0.000 0.000 LGA C 62 C 62 11.371 0 0.116 0.131 12.532 1.310 0.873 LGA F 63 F 63 8.365 0 0.552 1.028 12.847 12.143 4.545 LGA E 64 E 64 3.694 0 0.013 0.758 10.503 41.310 23.915 LGA L 65 L 65 1.514 0 0.683 0.660 4.647 62.619 53.274 LGA Q 66 Q 66 2.825 0 0.048 1.185 10.021 75.357 39.153 LGA E 67 E 67 2.911 0 0.215 1.270 11.611 63.214 31.323 LGA V 68 V 68 2.538 0 0.062 0.105 7.380 65.000 44.762 LGA G 69 G 69 2.319 0 0.274 0.274 2.866 65.119 65.119 LGA P 70 P 70 1.093 0 0.056 0.215 1.520 79.286 80.204 LGA P 71 P 71 1.677 0 0.199 0.570 4.640 58.929 57.211 LGA D 72 D 72 7.651 3 0.063 0.083 9.690 9.405 4.762 LGA C 73 C 73 13.500 0 0.188 0.175 16.580 0.000 0.000 LGA R 74 R 74 19.205 0 0.101 1.338 22.357 0.000 0.000 LGA C 75 C 75 25.920 0 0.617 0.964 29.184 0.000 0.000 LGA D 76 D 76 30.304 0 0.092 0.920 31.609 0.000 0.000 LGA N 77 N 77 34.549 0 0.676 1.279 38.589 0.000 0.000 LGA L 78 L 78 35.342 0 0.665 1.475 37.849 0.000 0.000 LGA C 79 C 79 35.847 0 0.619 0.582 39.528 0.000 0.000 LGA K 80 K 80 39.692 0 0.614 0.690 42.350 0.000 0.000 LGA S 81 S 81 41.571 0 0.590 0.937 44.574 0.000 0.000 LGA Y 82 Y 82 41.367 0 0.687 0.588 41.985 0.000 0.000 LGA S 83 S 83 44.684 0 0.410 0.425 44.930 0.000 0.000 LGA S 84 S 84 46.607 0 0.687 0.911 48.767 0.000 0.000 LGA C 85 C 85 53.111 0 0.053 0.817 56.987 0.000 0.000 LGA C 86 C 86 56.744 0 0.086 0.131 59.067 0.000 0.000 LGA H 87 H 87 60.420 0 0.656 0.608 64.178 0.000 0.000 LGA D 88 D 88 67.729 0 0.655 0.640 69.705 0.000 0.000 LGA F 89 F 89 70.852 0 0.525 1.433 75.202 0.000 0.000 LGA D 90 D 90 75.798 0 0.616 1.131 78.497 0.000 0.000 LGA E 91 E 91 80.479 0 0.547 0.883 84.290 0.000 0.000 LGA L 92 L 92 84.599 0 0.707 0.909 86.792 0.000 0.000 LGA C 93 C 93 88.448 0 0.485 0.994 89.661 0.000 0.000 LGA L 94 L 94 88.976 0 0.494 1.403 92.270 0.000 0.000 LGA K 95 K 95 94.508 0 0.368 1.667 97.886 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 31.896 31.755 31.860 13.342 10.129 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 8 2.45 18.750 17.892 0.313 LGA_LOCAL RMSD: 2.455 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 45.722 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 31.896 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.876158 * X + 0.466163 * Y + -0.122632 * Z + 162.877457 Y_new = -0.124753 * X + -0.026445 * Y + -0.991835 * Z + 18.290903 Z_new = -0.465600 * X + 0.884303 * Y + 0.034985 * Z + 239.853241 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.141435 0.484313 1.531255 [DEG: -8.1036 27.7491 87.7344 ] ZXZ: -0.123017 1.535804 -0.484635 [DEG: -7.0484 87.9951 -27.7676 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS028_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS028_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 8 2.45 17.892 31.90 REMARK ---------------------------------------------------------- MOLECULE T0543TS028_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gso_A ATOM 422 N GLY 56 -2.711 70.905 -0.896 1.00116.44 N ATOM 423 CA GLY 56 -1.928 71.953 -0.320 1.00116.44 C ATOM 424 C GLY 56 -1.537 71.518 1.052 1.00116.44 C ATOM 425 O GLY 56 -2.347 70.968 1.799 1.00116.44 O ATOM 426 N SER 57 -0.262 71.756 1.414 1.00166.05 N ATOM 427 CA SER 57 0.211 71.426 2.723 1.00166.05 C ATOM 428 CB SER 57 0.149 69.925 3.051 1.00166.05 C ATOM 429 OG SER 57 1.026 69.205 2.196 1.00166.05 O ATOM 430 C SER 57 1.646 71.831 2.766 1.00166.05 C ATOM 431 O SER 57 2.249 72.112 1.732 1.00166.05 O ATOM 432 N CYS 58 2.231 71.890 3.976 1.00 71.55 N ATOM 433 CA CYS 58 3.617 72.238 4.060 1.00 71.55 C ATOM 434 CB CYS 58 3.905 73.421 4.997 1.00 71.55 C ATOM 435 SG CYS 58 3.170 74.968 4.393 1.00 71.55 S ATOM 436 C CYS 58 4.328 71.053 4.621 1.00 71.55 C ATOM 437 O CYS 58 3.953 70.535 5.670 1.00 71.55 O ATOM 438 N LYS 59 5.375 70.582 3.917 1.00270.10 N ATOM 439 CA LYS 59 6.093 69.447 4.410 1.00270.10 C ATOM 440 CB LYS 59 5.660 68.123 3.755 1.00270.10 C ATOM 441 CG LYS 59 5.892 68.075 2.243 1.00270.10 C ATOM 442 CD LYS 59 5.579 66.716 1.610 1.00270.10 C ATOM 443 CE LYS 59 6.606 65.629 1.929 1.00270.10 C ATOM 444 NZ LYS 59 6.418 65.149 3.316 1.00270.10 N ATOM 445 C LYS 59 7.544 69.649 4.120 1.00270.10 C ATOM 446 O LYS 59 7.916 70.260 3.120 1.00270.10 O ATOM 447 N GLY 60 8.403 69.149 5.027 1.00121.96 N ATOM 448 CA GLY 60 9.820 69.225 4.834 1.00121.96 C ATOM 449 C GLY 60 10.434 69.302 6.191 1.00121.96 C ATOM 450 O GLY 60 10.161 70.227 6.955 1.00121.96 O ATOM 451 N ARG 61 11.299 68.327 6.521 1.00330.36 N ATOM 452 CA ARG 61 11.917 68.350 7.810 1.00330.36 C ATOM 453 CB ARG 61 11.146 67.562 8.882 1.00330.36 C ATOM 454 CG ARG 61 11.946 67.338 10.168 1.00330.36 C ATOM 455 CD ARG 61 11.095 66.912 11.366 1.00330.36 C ATOM 456 NE ARG 61 10.576 68.150 12.016 1.00330.36 N ATOM 457 CZ ARG 61 9.465 68.777 11.537 1.00330.36 C ATOM 458 NH1 ARG 61 8.841 68.307 10.417 1.00330.36 N ATOM 459 NH2 ARG 61 8.976 69.880 12.176 1.00330.36 N ATOM 460 C ARG 61 13.272 67.744 7.699 1.00330.36 C ATOM 461 O ARG 61 13.532 66.913 6.830 1.00330.36 O ATOM 462 N CYS 62 14.182 68.182 8.587 1.00 70.62 N ATOM 463 CA CYS 62 15.504 67.641 8.626 1.00 70.62 C ATOM 464 CB CYS 62 16.606 68.710 8.554 1.00 70.62 C ATOM 465 SG CYS 62 16.587 69.620 6.980 1.00 70.62 S ATOM 466 C CYS 62 15.618 66.977 9.956 1.00 70.62 C ATOM 467 O CYS 62 15.042 67.441 10.939 1.00 70.62 O ATOM 468 N PHE 63 16.353 65.853 10.024 1.00225.72 N ATOM 469 CA PHE 63 16.465 65.194 11.289 1.00225.72 C ATOM 470 CB PHE 63 16.384 63.661 11.174 1.00225.72 C ATOM 471 CG PHE 63 16.133 63.095 12.530 1.00225.72 C ATOM 472 CD1 PHE 63 14.877 63.177 13.089 1.00225.72 C ATOM 473 CD2 PHE 63 17.137 62.470 13.233 1.00225.72 C ATOM 474 CE1 PHE 63 14.626 62.655 14.336 1.00225.72 C ATOM 475 CE2 PHE 63 16.892 61.945 14.481 1.00225.72 C ATOM 476 CZ PHE 63 15.636 62.039 15.034 1.00225.72 C ATOM 477 C PHE 63 17.807 65.574 11.823 1.00225.72 C ATOM 478 O PHE 63 18.810 65.498 11.113 1.00225.72 O ATOM 479 N GLU 64 17.859 66.024 13.091 1.00311.77 N ATOM 480 CA GLU 64 19.112 66.463 13.631 1.00311.77 C ATOM 481 CB GLU 64 18.980 67.376 14.865 1.00311.77 C ATOM 482 CG GLU 64 18.356 66.680 16.077 1.00311.77 C ATOM 483 CD GLU 64 16.853 66.589 15.863 1.00311.77 C ATOM 484 OE1 GLU 64 16.284 67.537 15.259 1.00311.77 O ATOM 485 OE2 GLU 64 16.252 65.578 16.316 1.00311.77 O ATOM 486 C GLU 64 19.905 65.270 14.049 1.00311.77 C ATOM 487 O GLU 64 19.355 64.257 14.478 1.00311.77 O ATOM 488 N LEU 65 21.241 65.358 13.902 1.00263.62 N ATOM 489 CA LEU 65 22.092 64.296 14.346 1.00263.62 C ATOM 490 CB LEU 65 22.845 63.577 13.212 1.00263.62 C ATOM 491 CG LEU 65 21.917 62.816 12.244 1.00263.62 C ATOM 492 CD1 LEU 65 22.727 62.062 11.177 1.00263.62 C ATOM 493 CD2 LEU 65 20.932 61.903 12.992 1.00263.62 C ATOM 494 C LEU 65 23.103 64.917 15.253 1.00263.62 C ATOM 495 O LEU 65 23.584 66.021 14.999 1.00263.62 O ATOM 496 N GLN 66 23.441 64.228 16.360 1.00258.60 N ATOM 497 CA GLN 66 24.381 64.796 17.279 1.00258.60 C ATOM 498 CB GLN 66 23.735 65.219 18.610 1.00258.60 C ATOM 499 CG GLN 66 22.711 66.348 18.464 1.00258.60 C ATOM 500 CD GLN 66 22.088 66.605 19.829 1.00258.60 C ATOM 501 OE1 GLN 66 22.105 65.738 20.701 1.00258.60 O ATOM 502 NE2 GLN 66 21.517 67.825 20.019 1.00258.60 N ATOM 503 C GLN 66 25.406 63.757 17.596 1.00258.60 C ATOM 504 O GLN 66 25.103 62.565 17.656 1.00258.60 O ATOM 505 N GLU 67 26.666 64.193 17.794 1.00241.80 N ATOM 506 CA GLU 67 27.706 63.271 18.137 1.00241.80 C ATOM 507 CB GLU 67 29.130 63.778 17.848 1.00241.80 C ATOM 508 CG GLU 67 30.198 62.700 18.050 1.00241.80 C ATOM 509 CD GLU 67 31.542 63.259 17.604 1.00241.80 C ATOM 510 OE1 GLU 67 31.623 64.492 17.361 1.00241.80 O ATOM 511 OE2 GLU 67 32.507 62.456 17.500 1.00241.80 O ATOM 512 C GLU 67 27.590 63.018 19.603 1.00241.80 C ATOM 513 O GLU 67 26.981 63.795 20.332 1.00241.80 O ATOM 514 N VAL 68 28.157 61.892 20.072 1.00 58.04 N ATOM 515 CA VAL 68 28.051 61.559 21.465 1.00 58.04 C ATOM 516 CB VAL 68 27.127 60.385 21.686 1.00 58.04 C ATOM 517 CG1 VAL 68 27.023 60.047 23.187 1.00 58.04 C ATOM 518 CG2 VAL 68 25.770 60.722 21.040 1.00 58.04 C ATOM 519 C VAL 68 29.429 61.207 21.938 1.00 58.04 C ATOM 520 O VAL 68 30.339 61.013 21.137 1.00 58.04 O ATOM 521 N GLY 69 29.617 61.143 23.273 1.00 55.40 N ATOM 522 CA GLY 69 30.881 60.787 23.848 1.00 55.40 C ATOM 523 C GLY 69 31.423 61.995 24.530 1.00 55.40 C ATOM 524 O GLY 69 31.473 63.089 23.971 1.00 55.40 O ATOM 525 N PRO 70 31.808 61.787 25.760 1.00156.47 N ATOM 526 CA PRO 70 32.360 62.865 26.531 1.00156.47 C ATOM 527 CD PRO 70 31.075 60.846 26.594 1.00156.47 C ATOM 528 CB PRO 70 32.219 62.456 27.994 1.00156.47 C ATOM 529 CG PRO 70 31.032 61.480 27.992 1.00156.47 C ATOM 530 C PRO 70 33.774 63.125 26.137 1.00156.47 C ATOM 531 O PRO 70 34.457 62.203 25.695 1.00156.47 O ATOM 532 N PRO 71 34.199 64.346 26.260 1.00226.43 N ATOM 533 CA PRO 71 35.570 64.667 25.977 1.00226.43 C ATOM 534 CD PRO 71 33.307 65.457 25.965 1.00226.43 C ATOM 535 CB PRO 71 35.615 66.184 25.801 1.00226.43 C ATOM 536 CG PRO 71 34.192 66.543 25.334 1.00226.43 C ATOM 537 C PRO 71 36.477 64.158 27.057 1.00226.43 C ATOM 538 O PRO 71 37.686 64.100 26.833 1.00226.43 O ATOM 539 N ASP 72 35.922 63.801 28.232 1.00214.12 N ATOM 540 CA ASP 72 36.721 63.398 29.356 1.00214.12 C ATOM 541 CB ASP 72 35.913 63.344 30.670 1.00214.12 C ATOM 542 CG ASP 72 36.834 63.041 31.846 1.00214.12 C ATOM 543 OD1 ASP 72 37.301 61.876 31.959 1.00214.12 O ATOM 544 OD2 ASP 72 37.084 63.980 32.650 1.00214.12 O ATOM 545 C ASP 72 37.332 62.055 29.099 1.00214.12 C ATOM 546 O ASP 72 36.767 61.215 28.399 1.00214.12 O ATOM 547 N CYS 73 38.545 61.849 29.658 1.00105.81 N ATOM 548 CA CYS 73 39.267 60.614 29.551 1.00105.81 C ATOM 549 CB CYS 73 40.564 60.734 28.732 1.00105.81 C ATOM 550 SG CYS 73 41.754 61.891 29.480 1.00105.81 S ATOM 551 C CYS 73 39.675 60.243 30.943 1.00105.81 C ATOM 552 O CYS 73 39.716 61.096 31.827 1.00105.81 O ATOM 553 N ARG 74 39.980 58.953 31.184 1.00202.82 N ATOM 554 CA ARG 74 40.372 58.566 32.507 1.00202.82 C ATOM 555 CB ARG 74 39.746 57.245 32.982 1.00202.82 C ATOM 556 CG ARG 74 38.281 57.373 33.396 1.00202.82 C ATOM 557 CD ARG 74 37.325 57.664 32.240 1.00202.82 C ATOM 558 NE ARG 74 35.956 57.748 32.823 1.00202.82 N ATOM 559 CZ ARG 74 34.888 58.026 32.023 1.00202.82 C ATOM 560 NH1 ARG 74 35.072 58.199 30.682 1.00202.82 N ATOM 561 NH2 ARG 74 33.639 58.132 32.562 1.00202.82 N ATOM 562 C ARG 74 41.852 58.384 32.524 1.00202.82 C ATOM 563 O ARG 74 42.422 57.716 31.663 1.00202.82 O ATOM 564 N CYS 75 42.514 59.009 33.517 1.00104.13 N ATOM 565 CA CYS 75 43.935 58.896 33.649 1.00104.13 C ATOM 566 CB CYS 75 44.569 60.008 34.500 1.00104.13 C ATOM 567 SG CYS 75 43.988 59.972 36.223 1.00104.13 S ATOM 568 C CYS 75 44.224 57.602 34.333 1.00104.13 C ATOM 569 O CYS 75 43.375 57.047 35.029 1.00104.13 O ATOM 570 N ASP 76 45.446 57.078 34.129 1.00203.90 N ATOM 571 CA ASP 76 45.831 55.854 34.763 1.00203.90 C ATOM 572 CB ASP 76 47.125 55.255 34.180 1.00203.90 C ATOM 573 CG ASP 76 47.310 53.844 34.718 1.00203.90 C ATOM 574 OD1 ASP 76 46.337 53.298 35.304 1.00203.90 O ATOM 575 OD2 ASP 76 48.428 53.288 34.543 1.00203.90 O ATOM 576 C ASP 76 46.088 56.191 36.196 1.00203.90 C ATOM 577 O ASP 76 46.325 57.351 36.531 1.00203.90 O ATOM 578 N ASN 77 46.026 55.186 37.091 1.00254.92 N ATOM 579 CA ASN 77 46.270 55.459 38.476 1.00254.92 C ATOM 580 CB ASN 77 45.223 54.868 39.442 1.00254.92 C ATOM 581 CG ASN 77 45.293 53.351 39.363 1.00254.92 C ATOM 582 OD1 ASN 77 45.171 52.767 38.287 1.00254.92 O ATOM 583 ND2 ASN 77 45.498 52.690 40.534 1.00254.92 N ATOM 584 C ASN 77 47.583 54.846 38.827 1.00254.92 C ATOM 585 O ASN 77 47.966 53.811 38.285 1.00254.92 O ATOM 586 N LEU 78 48.318 55.501 39.743 1.00191.13 N ATOM 587 CA LEU 78 49.597 55.006 40.146 1.00191.13 C ATOM 588 CB LEU 78 50.465 56.055 40.860 1.00191.13 C ATOM 589 CG LEU 78 50.830 57.249 39.962 1.00191.13 C ATOM 590 CD1 LEU 78 51.769 58.228 40.683 1.00191.13 C ATOM 591 CD2 LEU 78 51.380 56.778 38.608 1.00191.13 C ATOM 592 C LEU 78 49.382 53.871 41.091 1.00191.13 C ATOM 593 O LEU 78 48.358 53.789 41.767 1.00191.13 O ATOM 594 N CYS 79 50.359 52.946 41.129 1.00108.82 N ATOM 595 CA CYS 79 50.296 51.808 41.994 1.00108.82 C ATOM 596 CB CYS 79 51.092 50.601 41.474 1.00108.82 C ATOM 597 SG CYS 79 52.870 50.960 41.353 1.00108.82 S ATOM 598 C CYS 79 50.884 52.196 43.311 1.00108.82 C ATOM 599 O CYS 79 51.373 53.310 43.488 1.00108.82 O ATOM 600 N LYS 80 50.830 51.266 44.283 1.00203.54 N ATOM 601 CA LYS 80 51.347 51.516 45.595 1.00203.54 C ATOM 602 CB LYS 80 50.927 50.458 46.629 1.00203.54 C ATOM 603 CG LYS 80 49.409 50.304 46.755 1.00203.54 C ATOM 604 CD LYS 80 48.676 51.577 47.183 1.00203.54 C ATOM 605 CE LYS 80 48.663 51.797 48.696 1.00203.54 C ATOM 606 NZ LYS 80 47.937 53.046 49.020 1.00203.54 N ATOM 607 C LYS 80 52.837 51.485 45.506 1.00203.54 C ATOM 608 O LYS 80 53.403 51.001 44.528 1.00203.54 O ATOM 609 N SER 81 53.511 52.032 46.535 1.00129.06 N ATOM 610 CA SER 81 54.944 52.077 46.548 1.00129.06 C ATOM 611 CB SER 81 55.534 52.986 47.640 1.00129.06 C ATOM 612 OG SER 81 55.294 52.432 48.927 1.00129.06 O ATOM 613 C SER 81 55.443 50.697 46.811 1.00129.06 C ATOM 614 O SER 81 54.664 49.760 46.982 1.00129.06 O ATOM 615 N TYR 82 56.782 50.545 46.837 1.00228.92 N ATOM 616 CA TYR 82 57.386 49.265 47.049 1.00228.92 C ATOM 617 CB TYR 82 58.530 48.948 46.073 1.00228.92 C ATOM 618 CG TYR 82 57.960 48.860 44.700 1.00228.92 C ATOM 619 CD1 TYR 82 57.725 50.003 43.970 1.00228.92 C ATOM 620 CD2 TYR 82 57.670 47.637 44.140 1.00228.92 C ATOM 621 CE1 TYR 82 57.200 49.928 42.702 1.00228.92 C ATOM 622 CE2 TYR 82 57.147 47.557 42.871 1.00228.92 C ATOM 623 CZ TYR 82 56.913 48.704 42.150 1.00228.92 C ATOM 624 OH TYR 82 56.376 48.628 40.848 1.00228.92 O ATOM 625 C TYR 82 57.980 49.273 48.419 1.00228.92 C ATOM 626 O TYR 82 58.466 50.297 48.898 1.00228.92 O ATOM 627 N SER 83 57.926 48.107 49.092 1.00169.69 N ATOM 628 CA SER 83 58.430 47.975 50.427 1.00169.69 C ATOM 629 CB SER 83 58.081 46.625 51.078 1.00169.69 C ATOM 630 OG SER 83 56.673 46.505 51.231 1.00169.69 O ATOM 631 C SER 83 59.919 48.089 50.379 1.00169.69 C ATOM 632 O SER 83 60.535 47.931 49.328 1.00169.69 O ATOM 633 N SER 84 60.531 48.399 51.540 1.00141.69 N ATOM 634 CA SER 84 61.950 48.583 51.631 1.00141.69 C ATOM 635 CB SER 84 62.372 49.478 52.808 1.00141.69 C ATOM 636 OG SER 84 61.836 50.784 52.650 1.00141.69 O ATOM 637 C SER 84 62.607 47.252 51.821 1.00141.69 C ATOM 638 O SER 84 61.946 46.222 51.946 1.00141.69 O ATOM 639 N CYS 85 63.955 47.260 51.816 1.00 72.51 N ATOM 640 CA CYS 85 64.729 46.069 52.004 1.00 72.51 C ATOM 641 CB CYS 85 65.742 45.827 50.869 1.00 72.51 C ATOM 642 SG CYS 85 66.721 44.309 51.069 1.00 72.51 S ATOM 643 C CYS 85 65.488 46.255 53.283 1.00 72.51 C ATOM 644 O CYS 85 65.536 47.356 53.831 1.00 72.51 O ATOM 645 N CYS 86 66.081 45.166 53.810 1.00 47.46 N ATOM 646 CA CYS 86 66.798 45.254 55.049 1.00 47.46 C ATOM 647 CB CYS 86 66.357 44.210 56.087 1.00 47.46 C ATOM 648 SG CYS 86 64.607 44.390 56.545 1.00 47.46 S ATOM 649 C CYS 86 68.246 45.011 54.769 1.00 47.46 C ATOM 650 O CYS 86 68.630 44.690 53.646 1.00 47.46 O ATOM 651 N HIS 87 69.095 45.184 55.801 1.00232.11 N ATOM 652 CA HIS 87 70.507 45.001 55.627 1.00232.11 C ATOM 653 ND1 HIS 87 69.998 47.398 57.757 1.00232.11 N ATOM 654 CG HIS 87 71.147 46.798 57.290 1.00232.11 C ATOM 655 CB HIS 87 71.316 46.286 55.888 1.00232.11 C ATOM 656 NE2 HIS 87 71.428 47.356 59.458 1.00232.11 N ATOM 657 CD2 HIS 87 72.011 46.783 58.341 1.00232.11 C ATOM 658 CE1 HIS 87 70.221 47.711 59.058 1.00232.11 C ATOM 659 C HIS 87 70.969 43.974 56.614 1.00232.11 C ATOM 660 O HIS 87 70.277 43.669 57.583 1.00232.11 O ATOM 661 N ASP 88 72.158 43.391 56.364 1.00246.42 N ATOM 662 CA ASP 88 72.729 42.419 57.253 1.00246.42 C ATOM 663 CB ASP 88 73.830 41.567 56.587 1.00246.42 C ATOM 664 CG ASP 88 74.912 42.462 55.978 1.00246.42 C ATOM 665 OD1 ASP 88 75.107 43.616 56.446 1.00246.42 O ATOM 666 OD2 ASP 88 75.549 41.991 54.999 1.00246.42 O ATOM 667 C ASP 88 73.283 43.153 58.430 1.00246.42 C ATOM 668 O ASP 88 73.409 44.375 58.392 1.00246.42 O ATOM 669 N PHE 89 73.622 42.436 59.523 1.00274.10 N ATOM 670 CA PHE 89 74.073 43.145 60.686 1.00274.10 C ATOM 671 CB PHE 89 73.124 42.975 61.886 1.00274.10 C ATOM 672 CG PHE 89 73.434 44.021 62.899 1.00274.10 C ATOM 673 CD1 PHE 89 73.009 45.314 62.695 1.00274.10 C ATOM 674 CD2 PHE 89 74.118 43.719 64.054 1.00274.10 C ATOM 675 CE1 PHE 89 73.275 46.295 63.619 1.00274.10 C ATOM 676 CE2 PHE 89 74.385 44.698 64.983 1.00274.10 C ATOM 677 CZ PHE 89 73.964 45.987 64.766 1.00274.10 C ATOM 678 C PHE 89 75.414 42.615 61.090 1.00274.10 C ATOM 679 O PHE 89 75.781 41.490 60.755 1.00274.10 O ATOM 680 N ASP 90 76.193 43.452 61.810 1.00234.86 N ATOM 681 CA ASP 90 77.496 43.079 62.281 1.00234.86 C ATOM 682 CB ASP 90 78.574 44.149 62.033 1.00234.86 C ATOM 683 CG ASP 90 79.893 43.623 62.583 1.00234.86 C ATOM 684 OD1 ASP 90 80.260 42.467 62.240 1.00234.86 O ATOM 685 OD2 ASP 90 80.557 44.373 63.348 1.00234.86 O ATOM 686 C ASP 90 77.434 42.908 63.765 1.00234.86 C ATOM 687 O ASP 90 76.913 43.764 64.476 1.00234.86 O ATOM 688 N GLU 91 77.964 41.777 64.270 1.00267.42 N ATOM 689 CA GLU 91 78.002 41.547 65.685 1.00267.42 C ATOM 690 CB GLU 91 77.352 40.212 66.081 1.00267.42 C ATOM 691 CG GLU 91 77.944 39.015 65.334 1.00267.42 C ATOM 692 CD GLU 91 77.065 37.801 65.603 1.00267.42 C ATOM 693 OE1 GLU 91 76.158 37.907 66.470 1.00267.42 O ATOM 694 OE2 GLU 91 77.286 36.753 64.940 1.00267.42 O ATOM 695 C GLU 91 79.446 41.510 66.076 1.00267.42 C ATOM 696 O GLU 91 80.247 40.823 65.444 1.00267.42 O ATOM 697 N LEU 92 79.828 42.273 67.121 1.00329.95 N ATOM 698 CA LEU 92 81.217 42.304 67.471 1.00329.95 C ATOM 699 CB LEU 92 81.921 43.549 66.888 1.00329.95 C ATOM 700 CG LEU 92 83.439 43.654 67.132 1.00329.95 C ATOM 701 CD1 LEU 92 83.780 43.954 68.598 1.00329.95 C ATOM 702 CD2 LEU 92 84.168 42.418 66.587 1.00329.95 C ATOM 703 C LEU 92 81.338 42.343 68.965 1.00329.95 C ATOM 704 O LEU 92 80.515 42.948 69.648 1.00329.95 O ATOM 705 N CYS 93 82.381 41.667 69.496 1.00160.62 N ATOM 706 CA CYS 93 82.717 41.677 70.896 1.00160.62 C ATOM 707 CB CYS 93 83.381 42.990 71.349 1.00160.62 C ATOM 708 SG CYS 93 83.812 43.013 73.114 1.00160.62 S ATOM 709 C CYS 93 81.500 41.471 71.731 1.00160.62 C ATOM 710 O CYS 93 81.086 42.373 72.460 1.00160.62 O ATOM 711 N LEU 94 80.870 40.286 71.648 1.00316.00 N ATOM 712 CA LEU 94 79.704 40.109 72.456 1.00316.00 C ATOM 713 CB LEU 94 78.455 39.695 71.662 1.00316.00 C ATOM 714 CG LEU 94 77.217 39.513 72.558 1.00316.00 C ATOM 715 CD1 LEU 94 76.856 40.825 73.269 1.00316.00 C ATOM 716 CD2 LEU 94 76.036 38.910 71.778 1.00316.00 C ATOM 717 C LEU 94 79.950 39.060 73.494 1.00316.00 C ATOM 718 O LEU 94 80.669 38.085 73.275 1.00316.00 O ATOM 719 N LYS 95 79.348 39.277 74.679 1.00328.15 N ATOM 720 CA LYS 95 79.353 38.376 75.796 1.00328.15 C ATOM 721 CB LYS 95 78.480 37.124 75.599 1.00328.15 C ATOM 722 CG LYS 95 77.972 36.506 76.910 1.00328.15 C ATOM 723 CD LYS 95 79.042 36.229 77.972 1.00328.15 C ATOM 724 CE LYS 95 79.675 34.840 77.901 1.00328.15 C ATOM 725 NZ LYS 95 80.619 34.665 79.029 1.00328.15 N ATOM 726 C LYS 95 80.732 37.886 76.106 1.00328.15 C ATOM 727 O LYS 95 80.975 36.680 76.080 1.00328.15 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 89.55 33.3 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 92.54 28.6 56 100.0 56 ARMSMC BURIED . . . . . . . . 81.45 45.5 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 89.00 44.4 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 90.25 42.9 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 97.19 32.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 66.76 72.7 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 65.93 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 48.01 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 65.33 50.0 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 68.06 40.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.54 33.3 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 88.56 37.5 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 85.66 28.6 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 93.82 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 73.59 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 73.59 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 82.27 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 2.70 100.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 31.90 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 31.90 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.7974 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 32.38 29 100.0 29 CRMSCA BURIED . . . . . . . . 30.58 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 31.66 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 32.11 142 100.0 142 CRMSMC BURIED . . . . . . . . 30.49 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 32.16 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 32.27 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 32.85 103 100.0 103 CRMSSC BURIED . . . . . . . . 30.31 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 31.95 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 32.56 219 100.0 219 CRMSALL BURIED . . . . . . . . 30.30 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 165.456 0.720 0.750 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 175.977 0.735 0.770 29 100.0 29 ERRCA BURIED . . . . . . . . 137.722 0.680 0.696 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 167.073 0.724 0.753 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 178.463 0.742 0.775 142 100.0 142 ERRMC BURIED . . . . . . . . 137.666 0.679 0.696 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 197.130 0.762 0.784 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 195.366 0.760 0.782 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 207.397 0.775 0.798 103 100.0 103 ERRSC BURIED . . . . . . . . 170.692 0.731 0.749 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 180.480 0.741 0.767 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 190.825 0.755 0.784 219 100.0 219 ERRALL BURIED . . . . . . . . 153.510 0.705 0.723 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 3 7 40 40 DISTCA CA (P) 0.00 0.00 0.00 7.50 17.50 40 DISTCA CA (RMS) 0.00 0.00 0.00 3.81 6.65 DISTCA ALL (N) 0 0 2 14 46 303 303 DISTALL ALL (P) 0.00 0.00 0.66 4.62 15.18 303 DISTALL ALL (RMS) 0.00 0.00 2.55 4.02 6.98 DISTALL END of the results output