####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS018_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS018_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 125 - 135 4.88 58.27 LONGEST_CONTINUOUS_SEGMENT: 11 126 - 136 4.81 59.42 LCS_AVERAGE: 21.93 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 108 - 114 1.53 52.50 LONGEST_CONTINUOUS_SEGMENT: 7 126 - 132 1.91 57.11 LCS_AVERAGE: 12.35 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 100 - 104 0.56 67.86 LONGEST_CONTINUOUS_SEGMENT: 5 110 - 114 0.90 52.01 LONGEST_CONTINUOUS_SEGMENT: 5 116 - 120 0.96 40.04 LCS_AVERAGE: 8.44 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 3 10 3 3 3 3 3 3 4 6 7 8 9 9 9 9 10 10 10 10 11 12 LCS_GDT A 97 A 97 3 5 10 3 3 3 4 5 5 5 6 7 8 9 9 9 9 10 10 10 10 10 12 LCS_GDT R 98 R 98 3 5 10 3 3 3 4 5 5 5 6 7 8 9 9 9 9 10 10 10 10 11 12 LCS_GDT G 99 G 99 3 6 10 3 3 4 4 6 6 7 7 7 8 9 9 9 9 10 10 10 10 11 12 LCS_GDT W 100 W 100 5 6 10 3 5 5 5 6 6 7 7 7 8 9 9 9 9 10 10 10 10 11 12 LCS_GDT E 101 E 101 5 6 10 4 5 5 5 6 6 7 7 7 8 9 9 9 9 10 10 10 10 11 12 LCS_GDT C 102 C 102 5 6 10 4 5 5 5 6 6 7 7 7 8 9 9 9 9 10 10 10 10 11 12 LCS_GDT T 103 T 103 5 6 10 4 5 5 5 6 6 7 7 7 8 9 9 9 9 10 10 10 11 11 12 LCS_GDT K 104 K 104 5 6 10 4 5 5 5 6 6 7 7 8 8 9 9 10 10 10 11 11 11 11 12 LCS_GDT D 105 D 105 4 6 10 3 3 4 5 6 6 7 7 8 8 8 9 10 10 10 11 11 11 11 12 LCS_GDT R 106 R 106 4 5 10 3 3 4 4 4 5 6 7 8 8 8 9 10 10 10 11 11 11 11 12 LCS_GDT C 107 C 107 4 5 10 3 3 4 4 6 6 7 8 8 8 8 9 10 10 10 11 11 11 11 12 LCS_GDT G 108 G 108 4 7 10 3 4 5 6 7 7 7 8 8 8 8 9 10 10 10 11 11 11 11 12 LCS_GDT E 109 E 109 4 7 10 3 4 5 6 7 7 7 8 8 8 8 9 10 10 10 11 11 11 11 12 LCS_GDT V 110 V 110 5 7 10 3 4 5 6 7 7 7 8 8 8 8 9 10 10 10 11 11 11 11 12 LCS_GDT R 111 R 111 5 7 10 3 4 5 6 7 7 7 8 8 8 8 9 10 10 10 11 11 11 11 11 LCS_GDT N 112 N 112 5 7 10 3 4 5 6 7 7 7 8 8 8 8 9 10 10 10 11 11 11 11 11 LCS_GDT E 113 E 113 5 7 10 3 4 5 6 7 7 7 8 8 8 8 9 10 10 10 11 11 11 11 11 LCS_GDT E 114 E 114 5 7 10 3 4 5 5 7 7 7 8 8 8 8 9 9 9 10 11 11 11 11 11 LCS_GDT N 115 N 115 4 4 10 3 4 4 4 4 6 6 7 8 8 8 9 9 9 9 10 10 11 11 11 LCS_GDT A 116 A 116 5 6 10 3 4 5 5 6 6 6 7 8 8 8 9 9 9 9 10 10 11 11 11 LCS_GDT C 117 C 117 5 6 9 3 4 5 5 6 6 6 7 8 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT H 118 H 118 5 6 9 3 4 5 5 6 6 6 7 8 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT C 119 C 119 5 6 9 3 4 5 5 6 6 6 7 8 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT S 120 S 120 5 6 9 3 3 5 5 6 6 6 7 8 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT E 121 E 121 3 6 9 3 3 4 5 6 6 6 7 8 8 8 8 8 9 9 10 10 11 11 11 LCS_GDT D 122 D 122 3 5 9 0 3 4 4 4 5 6 7 7 7 7 8 8 9 9 10 11 11 11 11 LCS_GDT C 123 C 123 3 4 9 0 3 3 4 4 4 4 6 6 7 7 8 8 8 9 10 11 11 11 11 LCS_GDT L 124 L 124 3 4 10 0 3 3 4 4 4 4 6 6 7 7 8 9 9 9 10 11 11 11 11 LCS_GDT S 125 S 125 3 4 11 3 3 3 3 4 4 6 8 8 8 8 8 9 9 10 11 11 12 12 12 LCS_GDT R 126 R 126 3 7 11 3 4 4 5 6 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT G 127 G 127 3 7 11 3 4 4 5 6 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT D 128 D 128 3 7 11 3 4 4 5 6 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT C 129 C 129 3 7 11 3 3 4 5 6 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT C 130 C 130 3 7 11 3 4 4 5 6 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT T 131 T 131 3 7 11 3 3 4 5 6 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT N 132 N 132 3 7 11 0 3 4 5 6 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT Y 133 Y 133 3 4 11 0 3 3 4 4 4 5 6 7 8 9 9 10 10 11 11 11 12 12 12 LCS_GDT Q 134 Q 134 3 4 11 0 3 3 4 4 4 5 5 7 7 8 9 10 10 11 11 11 12 12 12 LCS_GDT V 135 V 135 3 3 11 0 3 3 3 3 4 5 5 7 7 9 9 10 10 11 11 11 12 12 12 LCS_GDT V 136 V 136 3 3 11 2 3 3 3 3 4 4 5 6 6 7 7 9 10 11 11 11 12 12 12 LCS_GDT C 137 C 137 3 4 8 0 3 3 4 4 4 4 5 5 6 7 7 8 8 9 9 10 12 12 12 LCS_GDT K 138 K 138 3 4 8 2 3 3 4 4 4 4 5 5 5 6 6 8 8 9 9 10 12 12 12 LCS_GDT G 139 G 139 3 4 7 0 3 3 4 4 4 4 5 5 5 5 5 7 7 9 9 10 12 12 12 LCS_GDT E 140 E 140 3 4 6 0 3 3 4 4 4 4 5 5 5 5 5 5 5 5 5 8 8 8 8 LCS_AVERAGE LCS_A: 14.24 ( 8.44 12.35 21.93 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 7 7 8 8 8 9 9 10 10 11 11 11 12 12 12 GDT PERCENT_AT 8.89 11.11 11.11 13.33 15.56 15.56 15.56 17.78 17.78 17.78 20.00 20.00 22.22 22.22 24.44 24.44 24.44 26.67 26.67 26.67 GDT RMS_LOCAL 0.34 0.56 0.56 1.28 1.53 1.53 1.53 2.34 2.34 2.34 3.58 3.58 4.17 4.17 4.81 4.81 4.81 5.43 5.43 5.43 GDT RMS_ALL_AT 68.04 67.86 67.86 52.72 52.50 52.50 52.50 53.09 53.09 53.09 58.10 58.10 58.33 58.33 59.42 59.42 59.42 59.21 59.21 59.21 # Checking swapping # possible swapping detected: E 109 E 109 # possible swapping detected: E 113 E 113 # possible swapping detected: D 128 D 128 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 57.039 0 0.666 0.861 58.734 0.000 0.000 LGA A 97 A 97 52.574 0 0.130 0.120 54.251 0.000 0.000 LGA R 98 R 98 46.275 0 0.699 1.325 48.558 0.000 0.000 LGA G 99 G 99 43.841 0 0.340 0.340 45.017 0.000 0.000 LGA W 100 W 100 39.809 0 0.618 1.303 45.744 0.000 0.000 LGA E 101 E 101 32.646 0 0.063 1.126 35.378 0.000 0.000 LGA C 102 C 102 26.825 0 0.070 0.187 28.657 0.000 0.000 LGA T 103 T 103 21.770 0 0.083 1.264 24.516 0.000 0.000 LGA K 104 K 104 15.623 0 0.641 1.167 17.708 0.000 0.000 LGA D 105 D 105 13.331 0 0.635 1.076 18.624 0.000 0.000 LGA R 106 R 106 10.964 0 0.630 0.703 20.638 2.381 0.866 LGA C 107 C 107 4.384 0 0.113 0.746 6.804 37.738 43.016 LGA G 108 G 108 1.281 0 0.691 0.691 2.841 71.071 71.071 LGA E 109 E 109 0.814 0 0.059 1.296 6.663 83.810 61.111 LGA V 110 V 110 1.371 0 0.038 0.074 2.234 81.429 76.599 LGA R 111 R 111 2.715 0 0.135 1.495 8.319 69.048 33.983 LGA N 112 N 112 1.440 0 0.098 0.352 5.362 77.262 55.357 LGA E 113 E 113 0.795 0 0.692 1.389 3.847 75.952 62.434 LGA E 114 E 114 3.230 0 0.689 0.512 6.038 38.333 50.265 LGA N 115 N 115 10.317 0 0.081 1.073 13.332 1.786 0.893 LGA A 116 A 116 12.824 0 0.618 0.613 14.957 0.000 0.000 LGA C 117 C 117 19.286 0 0.027 0.141 22.660 0.000 0.000 LGA H 118 H 118 24.194 0 0.075 1.308 27.818 0.000 0.000 LGA C 119 C 119 31.098 0 0.562 0.892 33.833 0.000 0.000 LGA S 120 S 120 34.441 0 0.045 0.138 36.420 0.000 0.000 LGA E 121 E 121 40.468 0 0.683 1.125 46.643 0.000 0.000 LGA D 122 D 122 40.399 0 0.557 1.240 40.943 0.000 0.000 LGA C 123 C 123 42.897 0 0.649 0.629 44.976 0.000 0.000 LGA L 124 L 124 48.264 0 0.634 0.651 50.990 0.000 0.000 LGA S 125 S 125 50.114 0 0.665 0.586 50.114 0.000 0.000 LGA R 126 R 126 50.423 0 0.307 1.582 51.465 0.000 0.000 LGA G 127 G 127 54.008 0 0.460 0.460 54.008 0.000 0.000 LGA D 128 D 128 54.482 0 0.686 1.117 56.801 0.000 0.000 LGA C 129 C 129 61.385 0 0.434 0.993 65.236 0.000 0.000 LGA C 130 C 130 62.871 0 0.089 0.140 66.531 0.000 0.000 LGA T 131 T 131 68.828 0 0.677 1.394 71.671 0.000 0.000 LGA N 132 N 132 74.583 0 0.669 1.082 77.758 0.000 0.000 LGA Y 133 Y 133 78.325 0 0.551 1.334 81.231 0.000 0.000 LGA Q 134 Q 134 85.003 0 0.668 0.682 88.312 0.000 0.000 LGA V 135 V 135 89.205 0 0.594 0.624 91.632 0.000 0.000 LGA V 136 V 136 91.867 0 0.653 1.472 93.721 0.000 0.000 LGA C 137 C 137 94.909 0 0.696 0.625 98.096 0.000 0.000 LGA K 138 K 138 101.190 0 0.678 0.903 103.764 0.000 0.000 LGA G 139 G 139 106.969 0 0.693 0.693 109.217 0.000 0.000 LGA E 140 E 140 109.906 0 0.068 1.243 111.803 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 37.520 37.522 37.744 11.974 10.124 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 8 2.34 16.667 15.562 0.327 LGA_LOCAL RMSD: 2.343 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 53.086 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 37.520 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.300864 * X + 0.534629 * Y + 0.789717 * Z + 90.196228 Y_new = 0.940856 * X + -0.031125 * Y + -0.337373 * Z + 83.908493 Z_new = -0.155790 * X + 0.844514 * Y + -0.512373 * Z + 122.258186 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.261296 0.156427 2.116134 [DEG: 72.2669 8.9626 121.2455 ] ZXZ: 1.167057 2.108742 -0.182422 [DEG: 66.8674 120.8220 -10.4520 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS018_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS018_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 8 2.34 15.562 37.52 REMARK ---------------------------------------------------------- MOLECULE T0543TS018_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gsoA 1p49A ATOM 728 N THR 96 -14.212 90.047 -30.453 1.00266.13 N ATOM 729 CA THR 96 -13.579 90.569 -29.282 1.00266.13 C ATOM 730 CB THR 96 -14.390 90.397 -28.028 1.00266.13 C ATOM 731 OG1 THR 96 -13.756 91.056 -26.942 1.00266.13 O ATOM 732 CG2 THR 96 -14.552 88.897 -27.727 1.00266.13 C ATOM 733 C THR 96 -12.279 89.866 -29.086 1.00266.13 C ATOM 734 O THR 96 -12.201 88.639 -29.118 1.00266.13 O ATOM 735 N ALA 97 -11.203 90.655 -28.913 1.00294.38 N ATOM 736 CA ALA 97 -9.915 90.097 -28.646 1.00294.38 C ATOM 737 CB ALA 97 -9.055 89.903 -29.906 1.00294.38 C ATOM 738 C ALA 97 -9.219 91.093 -27.783 1.00294.38 C ATOM 739 O ALA 97 -9.356 92.298 -27.989 1.00294.38 O ATOM 740 N ARG 98 -8.468 90.619 -26.775 1.00327.86 N ATOM 741 CA ARG 98 -7.785 91.551 -25.930 1.00327.86 C ATOM 742 CB ARG 98 -8.704 92.221 -24.896 1.00327.86 C ATOM 743 CG ARG 98 -7.984 93.220 -23.987 1.00327.86 C ATOM 744 CD ARG 98 -8.826 93.675 -22.793 1.00327.86 C ATOM 745 NE ARG 98 -8.754 92.596 -21.768 1.00327.86 N ATOM 746 CZ ARG 98 -9.630 91.551 -21.812 1.00327.86 C ATOM 747 NH1 ARG 98 -10.573 91.492 -22.796 1.00327.86 N ATOM 748 NH2 ARG 98 -9.560 90.563 -20.872 1.00327.86 N ATOM 749 C ARG 98 -6.765 90.784 -25.160 1.00327.86 C ATOM 750 O ARG 98 -6.844 89.561 -25.057 1.00327.86 O ATOM 751 N GLY 99 -5.759 91.490 -24.613 1.00123.47 N ATOM 752 CA GLY 99 -4.802 90.810 -23.797 1.00123.47 C ATOM 753 C GLY 99 -3.799 91.807 -23.318 1.00123.47 C ATOM 754 O GLY 99 -2.902 92.208 -24.058 1.00123.47 O ATOM 755 N TRP 100 -3.936 92.231 -22.049 1.00299.24 N ATOM 756 CA TRP 100 -2.983 93.121 -21.454 1.00299.24 C ATOM 757 CB TRP 100 -3.417 94.596 -21.443 1.00299.24 C ATOM 758 CG TRP 100 -2.442 95.509 -20.734 1.00299.24 C ATOM 759 CD2 TRP 100 -1.379 96.232 -21.376 1.00299.24 C ATOM 760 CD1 TRP 100 -2.380 95.829 -19.409 1.00299.24 C ATOM 761 NE1 TRP 100 -1.343 96.701 -19.183 1.00299.24 N ATOM 762 CE2 TRP 100 -0.719 96.960 -20.385 1.00299.24 C ATOM 763 CE3 TRP 100 -0.986 96.288 -22.682 1.00299.24 C ATOM 764 CZ2 TRP 100 0.347 97.756 -20.687 1.00299.24 C ATOM 765 CZ3 TRP 100 0.092 97.091 -22.983 1.00299.24 C ATOM 766 CH2 TRP 100 0.745 97.811 -22.005 1.00299.24 C ATOM 767 C TRP 100 -2.865 92.708 -20.027 1.00299.24 C ATOM 768 O TRP 100 -3.871 92.496 -19.353 1.00299.24 O ATOM 769 N GLU 101 -1.624 92.560 -19.528 1.00323.42 N ATOM 770 CA GLU 101 -1.485 92.205 -18.148 1.00323.42 C ATOM 771 CB GLU 101 -1.787 90.723 -17.865 1.00323.42 C ATOM 772 CG GLU 101 -1.945 90.399 -16.379 1.00323.42 C ATOM 773 CD GLU 101 -3.349 90.816 -15.960 1.00323.42 C ATOM 774 OE1 GLU 101 -3.729 91.982 -16.246 1.00323.42 O ATOM 775 OE2 GLU 101 -4.060 89.970 -15.356 1.00323.42 O ATOM 776 C GLU 101 -0.064 92.445 -17.764 1.00323.42 C ATOM 777 O GLU 101 0.848 92.244 -18.565 1.00323.42 O ATOM 778 N CYS 102 0.163 92.910 -16.521 1.00 78.38 N ATOM 779 CA CYS 102 1.509 93.098 -16.068 1.00 78.38 C ATOM 780 CB CYS 102 1.963 94.569 -16.059 1.00 78.38 C ATOM 781 SG CYS 102 2.056 95.284 -17.729 1.00 78.38 S ATOM 782 C CYS 102 1.553 92.615 -14.657 1.00 78.38 C ATOM 783 O CYS 102 0.709 92.983 -13.842 1.00 78.38 O ATOM 784 N THR 103 2.534 91.752 -14.329 1.00232.58 N ATOM 785 CA THR 103 2.605 91.286 -12.978 1.00232.58 C ATOM 786 CB THR 103 2.174 89.854 -12.820 1.00232.58 C ATOM 787 OG1 THR 103 2.098 89.507 -11.446 1.00232.58 O ATOM 788 CG2 THR 103 3.182 88.950 -13.548 1.00232.58 C ATOM 789 C THR 103 4.022 91.384 -12.519 1.00232.58 C ATOM 790 O THR 103 4.950 91.030 -13.245 1.00232.58 O ATOM 791 N LYS 104 4.221 91.905 -11.293 1.00281.41 N ATOM 792 CA LYS 104 5.531 91.971 -10.717 1.00281.41 C ATOM 793 CB LYS 104 6.167 93.372 -10.749 1.00281.41 C ATOM 794 CG LYS 104 6.696 93.770 -12.129 1.00281.41 C ATOM 795 CD LYS 104 5.609 93.967 -13.186 1.00281.41 C ATOM 796 CE LYS 104 5.308 95.436 -13.487 1.00281.41 C ATOM 797 NZ LYS 104 4.702 96.080 -12.300 1.00281.41 N ATOM 798 C LYS 104 5.374 91.577 -9.288 1.00281.41 C ATOM 799 O LYS 104 4.468 92.047 -8.603 1.00281.41 O ATOM 800 N ASP 105 6.246 90.673 -8.805 1.00231.17 N ATOM 801 CA ASP 105 6.121 90.245 -7.446 1.00231.17 C ATOM 802 CB ASP 105 5.248 88.984 -7.284 1.00231.17 C ATOM 803 CG ASP 105 5.840 87.830 -8.090 1.00231.17 C ATOM 804 OD1 ASP 105 6.586 88.093 -9.071 1.00231.17 O ATOM 805 OD2 ASP 105 5.542 86.661 -7.732 1.00231.17 O ATOM 806 C ASP 105 7.478 89.959 -6.887 1.00231.17 C ATOM 807 O ASP 105 8.177 89.056 -7.343 1.00231.17 O ATOM 808 N ARG 106 7.899 90.750 -5.882 1.00224.96 N ATOM 809 CA ARG 106 9.163 90.493 -5.262 1.00224.96 C ATOM 810 CB ARG 106 10.184 91.632 -5.443 1.00224.96 C ATOM 811 CG ARG 106 10.614 91.839 -6.898 1.00224.96 C ATOM 812 CD ARG 106 11.629 92.967 -7.099 1.00224.96 C ATOM 813 NE ARG 106 12.956 92.472 -6.636 1.00224.96 N ATOM 814 CZ ARG 106 14.092 92.839 -7.300 1.00224.96 C ATOM 815 NH1 ARG 106 14.009 93.635 -8.407 1.00224.96 N ATOM 816 NH2 ARG 106 15.311 92.409 -6.862 1.00224.96 N ATOM 817 C ARG 106 8.901 90.364 -3.798 1.00224.96 C ATOM 818 O ARG 106 8.339 91.266 -3.180 1.00224.96 O ATOM 819 N CYS 107 9.291 89.220 -3.199 1.00 88.80 N ATOM 820 CA CYS 107 9.070 89.061 -1.793 1.00 88.80 C ATOM 821 CB CYS 107 7.774 88.304 -1.451 1.00 88.80 C ATOM 822 SG CYS 107 7.523 88.116 0.341 1.00 88.80 S ATOM 823 C CYS 107 10.198 88.256 -1.241 1.00 88.80 C ATOM 824 O CYS 107 10.804 87.450 -1.944 1.00 88.80 O ATOM 825 N GLY 108 10.519 88.479 0.048 1.00 95.22 N ATOM 826 CA GLY 108 11.550 87.712 0.682 1.00 95.22 C ATOM 827 C GLY 108 12.587 88.651 1.201 1.00 95.22 C ATOM 828 O GLY 108 12.669 89.807 0.789 1.00 95.22 O ATOM 829 N GLU 109 13.412 88.151 2.140 1.00304.30 N ATOM 830 CA GLU 109 14.477 88.919 2.708 1.00304.30 C ATOM 831 CB GLU 109 14.111 89.579 4.049 1.00304.30 C ATOM 832 CG GLU 109 15.286 90.265 4.754 1.00304.30 C ATOM 833 CD GLU 109 15.586 91.587 4.062 1.00304.30 C ATOM 834 OE1 GLU 109 15.030 91.824 2.957 1.00304.30 O ATOM 835 OE2 GLU 109 16.384 92.379 4.633 1.00304.30 O ATOM 836 C GLU 109 15.579 87.958 2.992 1.00304.30 C ATOM 837 O GLU 109 15.336 86.773 3.207 1.00304.30 O ATOM 838 N VAL 110 16.833 88.441 2.974 1.00133.36 N ATOM 839 CA VAL 110 17.900 87.549 3.303 1.00133.36 C ATOM 840 CB VAL 110 19.050 87.583 2.333 1.00133.36 C ATOM 841 CG1 VAL 110 19.684 88.983 2.352 1.00133.36 C ATOM 842 CG2 VAL 110 20.025 86.451 2.695 1.00133.36 C ATOM 843 C VAL 110 18.396 87.967 4.645 1.00133.36 C ATOM 844 O VAL 110 18.654 89.144 4.890 1.00133.36 O ATOM 845 N ARG 111 18.515 86.996 5.567 1.00270.30 N ATOM 846 CA ARG 111 18.962 87.313 6.887 1.00270.30 C ATOM 847 CB ARG 111 17.966 86.918 7.990 1.00270.30 C ATOM 848 CG ARG 111 16.666 87.724 7.983 1.00270.30 C ATOM 849 CD ARG 111 15.655 87.234 9.023 1.00270.30 C ATOM 850 NE ARG 111 15.188 85.888 8.585 1.00270.30 N ATOM 851 CZ ARG 111 14.890 84.924 9.505 1.00270.30 C ATOM 852 NH1 ARG 111 15.030 85.179 10.838 1.00270.30 N ATOM 853 NH2 ARG 111 14.456 83.697 9.091 1.00270.30 N ATOM 854 C ARG 111 20.190 86.510 7.131 1.00270.30 C ATOM 855 O ARG 111 20.380 85.448 6.541 1.00270.30 O ATOM 856 N ASN 112 21.075 87.023 8.003 1.00230.17 N ATOM 857 CA ASN 112 22.255 86.283 8.313 1.00230.17 C ATOM 858 CB ASN 112 23.546 87.111 8.228 1.00230.17 C ATOM 859 CG ASN 112 24.708 86.133 8.285 1.00230.17 C ATOM 860 OD1 ASN 112 25.119 85.702 9.361 1.00230.17 O ATOM 861 ND2 ASN 112 25.244 85.757 7.093 1.00230.17 N ATOM 862 C ASN 112 22.094 85.800 9.714 1.00230.17 C ATOM 863 O ASN 112 21.622 86.528 10.586 1.00230.17 O ATOM 864 N GLU 113 22.464 84.530 9.955 1.00229.47 N ATOM 865 CA GLU 113 22.314 83.945 11.253 1.00229.47 C ATOM 866 CB GLU 113 22.213 82.412 11.201 1.00229.47 C ATOM 867 CG GLU 113 20.885 81.959 10.585 1.00229.47 C ATOM 868 CD GLU 113 20.941 80.465 10.310 1.00229.47 C ATOM 869 OE1 GLU 113 22.051 79.959 9.995 1.00229.47 O ATOM 870 OE2 GLU 113 19.867 79.811 10.395 1.00229.47 O ATOM 871 C GLU 113 23.472 84.347 12.109 1.00229.47 C ATOM 872 O GLU 113 24.547 84.678 11.613 1.00229.47 O ATOM 873 N GLU 114 23.254 84.352 13.439 1.00233.28 N ATOM 874 CA GLU 114 24.277 84.741 14.367 1.00233.28 C ATOM 875 CB GLU 114 23.731 85.535 15.565 1.00233.28 C ATOM 876 CG GLU 114 23.239 86.930 15.171 1.00233.28 C ATOM 877 CD GLU 114 22.584 87.572 16.383 1.00233.28 C ATOM 878 OE1 GLU 114 21.762 86.884 17.045 1.00233.28 O ATOM 879 OE2 GLU 114 22.881 88.766 16.653 1.00233.28 O ATOM 880 C GLU 114 24.930 83.501 14.886 1.00233.28 C ATOM 881 O GLU 114 24.294 82.457 15.015 1.00233.28 O ATOM 882 N ASN 115 26.240 83.593 15.185 1.00219.62 N ATOM 883 CA ASN 115 26.984 82.458 15.648 1.00219.62 C ATOM 884 CB ASN 115 28.449 82.448 15.176 1.00219.62 C ATOM 885 CG ASN 115 28.464 82.227 13.671 1.00219.62 C ATOM 886 OD1 ASN 115 28.932 83.077 12.914 1.00219.62 O ATOM 887 ND2 ASN 115 27.940 81.055 13.223 1.00219.62 N ATOM 888 C ASN 115 27.019 82.467 17.140 1.00219.62 C ATOM 889 O ASN 115 26.717 83.470 17.784 1.00219.62 O ATOM 890 N ALA 116 27.367 81.302 17.724 1.00238.34 N ATOM 891 CA ALA 116 27.513 81.166 19.143 1.00238.34 C ATOM 892 CB ALA 116 26.566 80.130 19.770 1.00238.34 C ATOM 893 C ALA 116 28.907 80.674 19.353 1.00238.34 C ATOM 894 O ALA 116 29.456 79.975 18.502 1.00238.34 O ATOM 895 N CYS 117 29.536 81.037 20.487 1.00126.13 N ATOM 896 CA CYS 117 30.897 80.622 20.668 1.00126.13 C ATOM 897 CB CYS 117 31.887 81.794 20.761 1.00126.13 C ATOM 898 SG CYS 117 31.569 82.861 22.198 1.00126.13 S ATOM 899 C CYS 117 31.024 79.839 21.935 1.00126.13 C ATOM 900 O CYS 117 30.110 79.796 22.757 1.00126.13 O ATOM 901 N HIS 118 32.184 79.172 22.091 1.00230.38 N ATOM 902 CA HIS 118 32.494 78.394 23.255 1.00230.38 C ATOM 903 ND1 HIS 118 34.560 76.044 24.505 1.00230.38 N ATOM 904 CG HIS 118 33.241 76.106 24.110 1.00230.38 C ATOM 905 CB HIS 118 32.770 76.913 22.933 1.00230.38 C ATOM 906 NE2 HIS 118 33.420 74.739 25.897 1.00230.38 N ATOM 907 CD2 HIS 118 32.559 75.306 24.972 1.00230.38 C ATOM 908 CE1 HIS 118 34.610 75.214 25.575 1.00230.38 C ATOM 909 C HIS 118 33.753 78.955 23.831 1.00230.38 C ATOM 910 O HIS 118 34.673 79.315 23.098 1.00230.38 O ATOM 911 N CYS 119 33.818 79.068 25.173 1.00105.97 N ATOM 912 CA CYS 119 35.014 79.581 25.773 1.00105.97 C ATOM 913 CB CYS 119 34.867 81.028 26.278 1.00105.97 C ATOM 914 SG CYS 119 36.391 81.660 27.040 1.00105.97 S ATOM 915 C CYS 119 35.327 78.723 26.959 1.00105.97 C ATOM 916 O CYS 119 34.425 78.288 27.674 1.00105.97 O ATOM 917 N SER 120 36.625 78.441 27.186 1.00158.68 N ATOM 918 CA SER 120 36.990 77.647 28.324 1.00158.68 C ATOM 919 CB SER 120 37.142 76.149 28.011 1.00158.68 C ATOM 920 OG SER 120 38.181 75.952 27.063 1.00158.68 O ATOM 921 C SER 120 38.310 78.137 28.828 1.00158.68 C ATOM 922 O SER 120 39.108 78.697 28.077 1.00158.68 O ATOM 923 N GLU 121 38.556 77.947 30.141 1.00289.08 N ATOM 924 CA GLU 121 39.785 78.351 30.763 1.00289.08 C ATOM 925 CB GLU 121 39.578 79.432 31.840 1.00289.08 C ATOM 926 CG GLU 121 40.849 79.842 32.590 1.00289.08 C ATOM 927 CD GLU 121 41.667 80.760 31.697 1.00289.08 C ATOM 928 OE1 GLU 121 41.288 80.924 30.507 1.00289.08 O ATOM 929 OE2 GLU 121 42.683 81.312 32.196 1.00289.08 O ATOM 930 C GLU 121 40.334 77.145 31.457 1.00289.08 C ATOM 931 O GLU 121 39.586 76.380 32.062 1.00289.08 O ATOM 932 N ASP 122 41.661 76.922 31.362 1.00196.33 N ATOM 933 CA ASP 122 42.227 75.794 32.044 1.00196.33 C ATOM 934 CB ASP 122 42.387 74.556 31.144 1.00196.33 C ATOM 935 CG ASP 122 42.774 73.373 32.022 1.00196.33 C ATOM 936 OD1 ASP 122 43.035 73.591 33.235 1.00196.33 O ATOM 937 OD2 ASP 122 42.804 72.232 31.490 1.00196.33 O ATOM 938 C ASP 122 43.595 76.178 32.515 1.00196.33 C ATOM 939 O ASP 122 44.497 76.385 31.704 1.00196.33 O ATOM 940 N CYS 123 43.789 76.299 33.845 1.00113.39 N ATOM 941 CA CYS 123 45.101 76.638 34.315 1.00113.39 C ATOM 942 CB CYS 123 45.308 78.148 34.517 1.00113.39 C ATOM 943 SG CYS 123 44.227 78.825 35.812 1.00113.39 S ATOM 944 C CYS 123 45.321 75.997 35.648 1.00113.39 C ATOM 945 O CYS 123 44.455 76.038 36.522 1.00113.39 O ATOM 946 N LEU 124 46.496 75.362 35.826 1.00197.77 N ATOM 947 CA LEU 124 46.850 74.787 37.092 1.00197.77 C ATOM 948 CB LEU 124 46.648 73.263 37.162 1.00197.77 C ATOM 949 CG LEU 124 45.188 72.808 36.971 1.00197.77 C ATOM 950 CD1 LEU 124 45.055 71.286 37.138 1.00197.77 C ATOM 951 CD2 LEU 124 44.228 73.599 37.876 1.00197.77 C ATOM 952 C LEU 124 48.316 75.033 37.249 1.00197.77 C ATOM 953 O LEU 124 49.080 74.795 36.316 1.00197.77 O ATOM 954 N SER 125 48.764 75.531 38.420 1.00203.34 N ATOM 955 CA SER 125 50.178 75.754 38.522 1.00203.34 C ATOM 956 CB SER 125 50.724 76.696 37.435 1.00203.34 C ATOM 957 OG SER 125 50.145 77.985 37.574 1.00203.34 O ATOM 958 C SER 125 50.502 76.375 39.843 1.00203.34 C ATOM 959 O SER 125 49.695 76.384 40.771 1.00203.34 O ATOM 960 N ARG 126 51.739 76.906 39.933 1.00315.14 N ATOM 961 CA ARG 126 52.258 77.589 41.083 1.00315.14 C ATOM 962 CB ARG 126 51.541 78.918 41.384 1.00315.14 C ATOM 963 CG ARG 126 51.820 80.001 40.338 1.00315.14 C ATOM 964 CD ARG 126 51.204 81.363 40.669 1.00315.14 C ATOM 965 NE ARG 126 51.842 81.850 41.926 1.00315.14 N ATOM 966 CZ ARG 126 53.027 82.527 41.884 1.00315.14 C ATOM 967 NH1 ARG 126 53.648 82.751 40.689 1.00315.14 N ATOM 968 NH2 ARG 126 53.591 82.983 43.040 1.00315.14 N ATOM 969 C ARG 126 52.211 76.731 42.306 1.00315.14 C ATOM 970 O ARG 126 51.728 77.163 43.352 1.00315.14 O ATOM 971 N GLY 127 52.720 75.486 42.215 1.00144.56 N ATOM 972 CA GLY 127 52.775 74.668 43.395 1.00144.56 C ATOM 973 C GLY 127 53.860 73.659 43.196 1.00144.56 C ATOM 974 O GLY 127 53.848 72.910 42.221 1.00144.56 O ATOM 975 N ASP 128 54.837 73.607 44.127 1.00264.33 N ATOM 976 CA ASP 128 55.882 72.639 43.962 1.00264.33 C ATOM 977 CB ASP 128 56.567 72.731 42.585 1.00264.33 C ATOM 978 CG ASP 128 57.311 71.429 42.320 1.00264.33 C ATOM 979 OD1 ASP 128 56.993 70.424 43.011 1.00264.33 O ATOM 980 OD2 ASP 128 58.200 71.418 41.428 1.00264.33 O ATOM 981 C ASP 128 56.923 72.882 45.017 1.00264.33 C ATOM 982 O ASP 128 56.777 73.756 45.870 1.00264.33 O ATOM 983 N CYS 129 58.001 72.072 44.975 1.00135.87 N ATOM 984 CA CYS 129 59.151 72.181 45.827 1.00135.87 C ATOM 985 CB CYS 129 59.997 73.436 45.532 1.00135.87 C ATOM 986 SG CYS 129 61.561 73.481 46.461 1.00135.87 S ATOM 987 C CYS 129 58.766 72.186 47.271 1.00135.87 C ATOM 988 O CYS 129 59.211 73.041 48.037 1.00135.87 O ATOM 989 N CYS 130 57.914 71.236 47.698 1.00 60.76 N ATOM 990 CA CYS 130 57.635 71.170 49.102 1.00 60.76 C ATOM 991 CB CYS 130 56.439 70.268 49.449 1.00 60.76 C ATOM 992 SG CYS 130 54.875 70.905 48.775 1.00 60.76 S ATOM 993 C CYS 130 58.866 70.583 49.720 1.00 60.76 C ATOM 994 O CYS 130 59.388 69.583 49.233 1.00 60.76 O ATOM 995 N THR 131 59.378 71.193 50.807 1.00278.14 N ATOM 996 CA THR 131 60.598 70.673 51.356 1.00278.14 C ATOM 997 CB THR 131 61.794 71.522 51.042 1.00278.14 C ATOM 998 OG1 THR 131 62.987 70.864 51.440 1.00278.14 O ATOM 999 CG2 THR 131 61.652 72.867 51.776 1.00278.14 C ATOM 1000 C THR 131 60.483 70.597 52.844 1.00278.14 C ATOM 1001 O THR 131 59.646 71.260 53.454 1.00278.14 O ATOM 1002 N ASN 132 61.327 69.743 53.459 1.00299.58 N ATOM 1003 CA ASN 132 61.339 69.603 54.886 1.00299.58 C ATOM 1004 CB ASN 132 60.551 68.379 55.379 1.00299.58 C ATOM 1005 CG ASN 132 61.211 67.144 54.781 1.00299.58 C ATOM 1006 OD1 ASN 132 62.218 66.652 55.286 1.00299.58 O ATOM 1007 ND2 ASN 132 60.625 66.628 53.668 1.00299.58 N ATOM 1008 C ASN 132 62.761 69.405 55.307 1.00299.58 C ATOM 1009 O ASN 132 63.565 68.845 54.563 1.00299.58 O ATOM 1010 N TYR 133 63.113 69.887 56.516 1.00273.26 N ATOM 1011 CA TYR 133 64.450 69.703 57.000 1.00273.26 C ATOM 1012 CB TYR 133 65.369 70.922 56.833 1.00273.26 C ATOM 1013 CG TYR 133 65.705 70.992 55.385 1.00273.26 C ATOM 1014 CD1 TYR 133 64.882 71.648 54.500 1.00273.26 C ATOM 1015 CD2 TYR 133 66.846 70.384 54.916 1.00273.26 C ATOM 1016 CE1 TYR 133 65.201 71.703 53.164 1.00273.26 C ATOM 1017 CE2 TYR 133 67.170 70.434 53.582 1.00273.26 C ATOM 1018 CZ TYR 133 66.346 71.097 52.704 1.00273.26 C ATOM 1019 OH TYR 133 66.672 71.153 51.332 1.00273.26 O ATOM 1020 C TYR 133 64.407 69.350 58.450 1.00273.26 C ATOM 1021 O TYR 133 63.394 69.533 59.123 1.00273.26 O ATOM 1022 N GLN 134 65.531 68.803 58.952 1.00265.86 N ATOM 1023 CA GLN 134 65.637 68.393 60.321 1.00265.86 C ATOM 1024 CB GLN 134 66.207 66.969 60.457 1.00265.86 C ATOM 1025 CG GLN 134 66.345 66.464 61.893 1.00265.86 C ATOM 1026 CD GLN 134 66.919 65.054 61.825 1.00265.86 C ATOM 1027 OE1 GLN 134 67.946 64.830 61.185 1.00265.86 O ATOM 1028 NE2 GLN 134 66.244 64.078 62.489 1.00265.86 N ATOM 1029 C GLN 134 66.598 69.329 60.983 1.00265.86 C ATOM 1030 O GLN 134 67.530 69.824 60.351 1.00265.86 O ATOM 1031 N VAL 135 66.377 69.624 62.282 1.00 49.45 N ATOM 1032 CA VAL 135 67.273 70.515 62.958 1.00 49.45 C ATOM 1033 CB VAL 135 66.679 71.860 63.250 1.00 49.45 C ATOM 1034 CG1 VAL 135 67.711 72.692 64.031 1.00 49.45 C ATOM 1035 CG2 VAL 135 66.232 72.496 61.925 1.00 49.45 C ATOM 1036 C VAL 135 67.624 69.911 64.278 1.00 49.45 C ATOM 1037 O VAL 135 66.835 69.176 64.870 1.00 49.45 O ATOM 1038 N VAL 136 68.850 70.195 64.759 1.00 81.82 N ATOM 1039 CA VAL 136 69.266 69.714 66.043 1.00 81.82 C ATOM 1040 CB VAL 136 70.033 68.427 65.982 1.00 81.82 C ATOM 1041 CG1 VAL 136 69.112 67.337 65.408 1.00 81.82 C ATOM 1042 CG2 VAL 136 71.314 68.658 65.162 1.00 81.82 C ATOM 1043 C VAL 136 70.187 70.746 66.610 1.00 81.82 C ATOM 1044 O VAL 136 70.836 71.480 65.868 1.00 81.82 O ATOM 1045 N CYS 137 70.250 70.848 67.953 1.00 54.19 N ATOM 1046 CA CYS 137 71.144 71.800 68.542 1.00 54.19 C ATOM 1047 CB CYS 137 70.460 73.118 68.948 1.00 54.19 C ATOM 1048 SG CYS 137 69.799 74.031 67.521 1.00 54.19 S ATOM 1049 C CYS 137 71.699 71.192 69.790 1.00 54.19 C ATOM 1050 O CYS 137 70.981 70.529 70.538 1.00 54.19 O ATOM 1051 N LYS 138 73.011 71.386 70.034 1.00249.72 N ATOM 1052 CA LYS 138 73.613 70.862 71.225 1.00249.72 C ATOM 1053 CB LYS 138 74.053 69.394 71.116 1.00249.72 C ATOM 1054 CG LYS 138 72.891 68.408 70.988 1.00249.72 C ATOM 1055 CD LYS 138 73.340 66.987 70.645 1.00249.72 C ATOM 1056 CE LYS 138 74.166 66.334 71.756 1.00249.72 C ATOM 1057 NZ LYS 138 73.360 66.240 72.993 1.00249.72 N ATOM 1058 C LYS 138 74.849 71.655 71.502 1.00249.72 C ATOM 1059 O LYS 138 75.294 72.443 70.669 1.00249.72 O ATOM 1060 N GLY 139 75.421 71.476 72.711 1.00135.31 N ATOM 1061 CA GLY 139 76.640 72.146 73.052 1.00135.31 C ATOM 1062 C GLY 139 76.836 72.023 74.529 1.00135.31 C ATOM 1063 O GLY 139 75.874 72.038 75.296 1.00135.31 O ATOM 1064 N GLU 140 78.104 71.890 74.964 1.00288.84 N ATOM 1065 CA GLU 140 78.394 71.803 76.367 1.00288.84 C ATOM 1066 CB GLU 140 78.159 70.414 76.980 1.00288.84 C ATOM 1067 CG GLU 140 78.486 70.361 78.476 1.00288.84 C ATOM 1068 CD GLU 140 78.364 68.916 78.941 1.00288.84 C ATOM 1069 OE1 GLU 140 77.227 68.373 78.896 1.00288.84 O ATOM 1070 OE2 GLU 140 79.406 68.335 79.346 1.00288.84 O ATOM 1071 C GLU 140 79.845 72.089 76.560 1.00288.84 C ATOM 1072 O GLU 140 80.652 71.924 75.646 1.00288.84 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 100.94 25.0 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 110.23 16.1 62 100.0 62 ARMSMC BURIED . . . . . . . . 74.24 46.2 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.39 46.2 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 88.57 44.4 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 91.80 38.5 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 77.84 61.5 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 91.35 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 84.67 50.0 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 85.70 50.0 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 103.11 42.9 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 62.13 46.2 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 58.94 50.0 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 70.07 30.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 18.98 100.0 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 85.09 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 85.09 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 85.05 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 85.17 0.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 37.52 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 37.52 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.8338 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 40.78 32 100.0 32 CRMSCA BURIED . . . . . . . . 27.92 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 37.43 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 40.73 156 100.0 156 CRMSMC BURIED . . . . . . . . 27.97 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 38.02 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 38.80 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 41.56 112 100.0 112 CRMSSC BURIED . . . . . . . . 29.16 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 37.76 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 41.15 240 100.0 240 CRMSALL BURIED . . . . . . . . 28.55 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 172.816 0.687 0.716 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 175.035 0.658 0.695 32 100.0 32 ERRCA BURIED . . . . . . . . 167.356 0.759 0.768 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 174.412 0.690 0.718 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 177.406 0.662 0.698 156 100.0 156 ERRMC BURIED . . . . . . . . 167.228 0.758 0.768 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 204.808 0.734 0.756 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 209.847 0.738 0.763 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 207.076 0.709 0.736 112 100.0 112 ERRSC BURIED . . . . . . . . 200.014 0.786 0.799 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 188.122 0.709 0.736 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 190.011 0.682 0.714 240 100.0 240 ERRALL BURIED . . . . . . . . 183.804 0.772 0.784 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 4 8 45 45 DISTCA CA (P) 0.00 0.00 2.22 8.89 17.78 45 DISTCA CA (RMS) 0.00 0.00 2.10 3.63 6.21 DISTCA ALL (N) 0 1 5 18 54 345 345 DISTALL ALL (P) 0.00 0.29 1.45 5.22 15.65 345 DISTALL ALL (RMS) 0.00 1.21 1.97 3.67 6.55 DISTALL END of the results output