####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS018_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS018_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 56 - 66 4.92 60.18 LCS_AVERAGE: 25.06 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 7 65 - 71 1.70 44.11 LONGEST_CONTINUOUS_SEGMENT: 7 71 - 77 1.88 36.77 LONGEST_CONTINUOUS_SEGMENT: 7 82 - 88 1.97 50.20 LCS_AVERAGE: 14.00 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 5 65 - 69 0.45 48.74 LONGEST_CONTINUOUS_SEGMENT: 5 72 - 76 0.76 36.33 LCS_AVERAGE: 9.31 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 4 5 11 3 4 4 4 5 5 5 7 7 8 8 10 10 10 10 10 11 11 11 11 LCS_GDT S 57 S 57 4 5 11 3 4 4 4 5 5 5 7 7 8 8 10 10 10 10 10 11 11 11 11 LCS_GDT C 58 C 58 4 5 11 3 4 4 4 5 5 5 7 7 8 8 10 10 10 10 10 11 11 11 11 LCS_GDT K 59 K 59 4 5 11 3 4 4 4 5 6 6 7 8 8 8 10 10 10 10 10 12 12 12 12 LCS_GDT G 60 G 60 3 5 11 3 3 4 4 5 6 6 7 8 8 8 10 10 10 10 11 12 12 12 12 LCS_GDT R 61 R 61 3 5 11 3 3 4 4 5 6 6 7 8 8 8 10 10 10 10 11 12 12 12 12 LCS_GDT C 62 C 62 4 5 11 3 4 4 5 5 6 6 7 8 8 8 10 10 10 10 11 12 12 12 12 LCS_GDT F 63 F 63 4 5 11 3 4 4 5 5 6 6 7 8 8 9 10 10 10 10 11 12 12 12 12 LCS_GDT E 64 E 64 4 5 11 3 4 4 5 5 6 7 7 8 8 9 10 10 10 10 11 12 12 12 12 LCS_GDT L 65 L 65 5 7 11 4 5 5 6 7 7 7 7 8 8 9 10 10 10 10 11 12 12 12 12 LCS_GDT Q 66 Q 66 5 7 11 4 5 5 6 7 7 7 7 8 8 9 9 9 10 10 11 12 12 12 12 LCS_GDT E 67 E 67 5 7 10 4 5 5 6 7 7 7 7 8 8 9 9 9 10 10 11 12 12 12 12 LCS_GDT V 68 V 68 5 7 10 4 5 5 6 7 7 7 7 8 8 9 9 9 10 10 11 12 12 12 12 LCS_GDT G 69 G 69 5 7 10 4 5 5 6 7 7 7 7 8 8 9 9 9 10 10 11 12 12 12 12 LCS_GDT P 70 P 70 4 7 10 3 3 5 6 7 7 7 7 8 8 9 9 9 10 10 11 12 12 12 12 LCS_GDT P 71 P 71 4 7 10 3 3 5 5 7 7 7 7 8 8 9 9 9 10 10 10 10 11 12 12 LCS_GDT D 72 D 72 5 7 10 3 4 5 5 6 7 7 7 7 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT C 73 C 73 5 7 10 3 4 5 5 6 7 7 7 7 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT R 74 R 74 5 7 9 3 4 5 5 6 7 7 7 7 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT C 75 C 75 5 7 9 3 4 5 5 6 7 7 7 7 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT D 76 D 76 5 7 9 3 4 5 5 6 7 7 7 7 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT N 77 N 77 3 7 9 3 4 5 5 6 7 7 7 7 8 8 8 9 9 9 10 10 10 11 11 LCS_GDT L 78 L 78 3 4 9 3 3 3 4 4 5 5 6 7 7 8 8 8 9 9 10 10 10 11 11 LCS_GDT C 79 C 79 3 4 9 3 3 3 4 4 4 5 6 7 7 7 7 8 9 9 10 10 10 11 11 LCS_GDT K 80 K 80 3 4 9 0 3 3 4 4 4 5 6 7 7 7 7 8 9 9 10 10 10 11 11 LCS_GDT S 81 S 81 3 4 10 0 3 3 4 5 5 7 8 8 8 8 8 8 8 9 10 11 11 12 12 LCS_GDT Y 82 Y 82 3 7 10 0 3 3 4 7 7 7 8 8 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT S 83 S 83 3 7 10 0 3 4 4 7 7 7 8 8 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT S 84 S 84 3 7 10 3 3 4 4 7 7 7 8 8 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT C 85 C 85 3 7 10 3 3 4 4 7 7 7 8 8 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT C 86 C 86 3 7 10 3 3 4 4 7 7 7 8 8 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT H 87 H 87 3 7 10 3 3 4 4 7 7 7 8 8 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT D 88 D 88 3 7 10 3 3 4 4 7 7 7 8 8 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT F 89 F 89 3 4 10 3 3 4 4 4 4 5 6 6 8 8 8 9 10 10 11 11 11 12 12 LCS_GDT D 90 D 90 3 4 10 3 3 4 4 4 4 5 6 6 7 8 8 9 10 10 11 11 11 12 12 LCS_GDT E 91 E 91 3 3 10 3 3 3 3 3 4 5 6 6 7 8 8 9 10 10 11 11 11 12 12 LCS_GDT L 92 L 92 3 3 10 3 3 3 3 3 4 4 5 6 7 7 8 9 10 10 11 11 11 12 12 LCS_GDT C 93 C 93 3 3 9 3 3 3 3 3 4 4 5 6 7 7 8 9 9 9 10 10 10 11 12 LCS_GDT L 94 L 94 3 3 9 3 3 3 3 3 4 4 5 5 5 6 8 9 9 9 10 10 10 11 12 LCS_GDT K 95 K 95 3 3 9 0 3 3 3 3 4 4 5 5 5 6 7 9 9 9 10 10 10 11 12 LCS_AVERAGE LCS_A: 16.12 ( 9.31 14.00 25.06 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 4 5 5 6 7 7 7 8 8 8 9 10 10 10 10 11 12 12 12 12 GDT PERCENT_AT 10.00 12.50 12.50 15.00 17.50 17.50 17.50 20.00 20.00 20.00 22.50 25.00 25.00 25.00 25.00 27.50 30.00 30.00 30.00 30.00 GDT RMS_LOCAL 0.40 0.45 0.45 1.14 1.70 1.70 1.70 2.59 2.43 2.43 3.54 4.33 4.33 4.33 4.29 5.06 6.04 6.04 5.69 5.69 GDT RMS_ALL_AT 48.41 48.74 48.74 48.23 44.11 44.11 44.11 49.75 44.48 44.48 46.54 60.38 60.38 60.38 47.54 52.35 51.79 51.79 51.81 51.81 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # possible swapping detected: D 88 D 88 # possible swapping detected: F 89 F 89 # possible swapping detected: E 91 E 91 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 94.905 0 0.679 0.679 97.191 0.000 0.000 LGA S 57 S 57 94.513 0 0.101 0.093 96.123 0.000 0.000 LGA C 58 C 58 90.615 0 0.638 0.775 92.090 0.000 0.000 LGA K 59 K 59 91.597 0 0.124 0.821 93.264 0.000 0.000 LGA G 60 G 60 91.326 0 0.694 0.694 91.562 0.000 0.000 LGA R 61 R 61 84.452 0 0.684 1.249 87.028 0.000 0.000 LGA C 62 C 62 79.442 0 0.164 0.828 81.354 0.000 0.000 LGA F 63 F 63 74.196 0 0.543 0.462 78.477 0.000 0.000 LGA E 64 E 64 71.907 0 0.000 0.662 72.845 0.000 0.000 LGA L 65 L 65 66.727 0 0.689 0.933 70.567 0.000 0.000 LGA Q 66 Q 66 63.460 0 0.053 1.113 67.350 0.000 0.000 LGA E 67 E 67 57.236 0 0.145 1.229 59.277 0.000 0.000 LGA V 68 V 68 55.299 0 0.092 1.131 57.128 0.000 0.000 LGA G 69 G 69 50.637 0 0.232 0.232 52.476 0.000 0.000 LGA P 70 P 70 44.821 0 0.078 0.129 46.126 0.000 0.000 LGA P 71 P 71 43.906 0 0.624 0.541 46.004 0.000 0.000 LGA D 72 D 72 44.242 3 0.278 0.367 45.355 0.000 0.000 LGA C 73 C 73 40.879 0 0.091 0.120 42.681 0.000 0.000 LGA R 74 R 74 36.322 0 0.080 1.290 37.763 0.000 0.000 LGA C 75 C 75 34.440 0 0.551 0.966 35.904 0.000 0.000 LGA D 76 D 76 28.847 0 0.219 1.039 30.715 0.000 0.000 LGA N 77 N 77 23.582 0 0.671 0.936 28.298 0.000 0.000 LGA L 78 L 78 16.927 0 0.604 1.439 19.378 0.000 0.000 LGA C 79 C 79 15.744 0 0.652 0.808 20.006 0.000 0.000 LGA K 80 K 80 11.666 0 0.623 1.147 17.829 1.429 0.635 LGA S 81 S 81 4.405 0 0.628 0.782 7.178 36.786 34.127 LGA Y 82 Y 82 1.972 0 0.658 1.449 7.120 56.548 50.635 LGA S 83 S 83 1.928 0 0.403 0.663 3.040 67.143 67.698 LGA S 84 S 84 1.720 0 0.673 0.596 4.314 64.048 57.222 LGA C 85 C 85 2.910 0 0.083 0.873 7.561 73.214 54.365 LGA C 86 C 86 1.405 0 0.020 0.804 3.578 73.095 66.746 LGA H 87 H 87 2.155 0 0.617 1.076 5.239 55.595 55.095 LGA D 88 D 88 2.951 0 0.371 1.179 4.689 47.619 52.619 LGA F 89 F 89 9.315 0 0.568 1.354 17.720 2.857 1.039 LGA D 90 D 90 12.901 0 0.602 1.209 17.812 0.000 0.000 LGA E 91 E 91 12.067 0 0.539 1.401 14.338 0.000 0.370 LGA L 92 L 92 14.639 0 0.704 1.025 16.986 0.000 0.000 LGA C 93 C 93 21.778 0 0.652 0.602 24.733 0.000 0.000 LGA L 94 L 94 25.685 0 0.467 1.052 28.106 0.000 0.000 LGA K 95 K 95 26.229 0 0.048 1.377 29.406 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 32.406 32.302 32.635 11.958 11.014 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 8 2.59 18.750 17.601 0.297 LGA_LOCAL RMSD: 2.592 Number of atoms: 8 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 49.748 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 32.406 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.684285 * X + -0.025371 * Y + 0.728774 * Z + 36.953255 Y_new = -0.596851 * X + 0.554694 * Y + 0.579726 * Z + 204.474487 Z_new = -0.418955 * X + -0.831667 * Y + 0.364426 * Z + -147.582870 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.717257 0.432294 -1.157809 [DEG: -41.0958 24.7686 -66.3376 ] ZXZ: 2.242776 1.197780 -2.674947 [DEG: 128.5016 68.6277 -153.2632 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS018_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS018_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 8 2.59 17.601 32.41 REMARK ---------------------------------------------------------- MOLECULE T0543TS018_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2gsoA 1p49A ATOM 422 N GLY 56 -7.360 47.402 101.793 1.00 78.75 N ATOM 423 CA GLY 56 -7.740 47.621 100.432 1.00 78.75 C ATOM 424 C GLY 56 -7.834 46.275 99.798 1.00 78.75 C ATOM 425 O GLY 56 -7.495 45.264 100.414 1.00 78.75 O ATOM 426 N SER 57 -8.296 46.231 98.537 1.00158.61 N ATOM 427 CA SER 57 -8.384 44.980 97.849 1.00158.61 C ATOM 428 CB SER 57 -9.752 44.714 97.200 1.00158.61 C ATOM 429 OG SER 57 -9.738 43.453 96.545 1.00158.61 O ATOM 430 C SER 57 -7.384 45.031 96.748 1.00158.61 C ATOM 431 O SER 57 -7.123 46.092 96.181 1.00158.61 O ATOM 432 N CYS 58 -6.780 43.875 96.422 1.00 94.36 N ATOM 433 CA CYS 58 -5.791 43.869 95.389 1.00 94.36 C ATOM 434 CB CYS 58 -4.581 42.972 95.700 1.00 94.36 C ATOM 435 SG CYS 58 -3.342 42.996 94.370 1.00 94.36 S ATOM 436 C CYS 58 -6.426 43.348 94.148 1.00 94.36 C ATOM 437 O CYS 58 -7.188 42.384 94.179 1.00 94.36 O ATOM 438 N LYS 59 -6.132 44.006 93.012 1.00226.03 N ATOM 439 CA LYS 59 -6.655 43.566 91.756 1.00226.03 C ATOM 440 CB LYS 59 -6.807 44.702 90.727 1.00226.03 C ATOM 441 CG LYS 59 -5.495 45.414 90.390 1.00226.03 C ATOM 442 CD LYS 59 -5.635 46.472 89.291 1.00226.03 C ATOM 443 CE LYS 59 -6.307 47.759 89.777 1.00226.03 C ATOM 444 NZ LYS 59 -6.360 48.756 88.683 1.00226.03 N ATOM 445 C LYS 59 -5.696 42.558 91.223 1.00226.03 C ATOM 446 O LYS 59 -4.503 42.604 91.519 1.00226.03 O ATOM 447 N GLY 60 -6.205 41.598 90.430 1.00 90.06 N ATOM 448 CA GLY 60 -5.336 40.593 89.901 1.00 90.06 C ATOM 449 C GLY 60 -4.490 41.249 88.864 1.00 90.06 C ATOM 450 O GLY 60 -4.856 42.285 88.312 1.00 90.06 O ATOM 451 N ARG 61 -3.319 40.650 88.579 1.00210.88 N ATOM 452 CA ARG 61 -2.447 41.208 87.592 1.00210.88 C ATOM 453 CB ARG 61 -0.990 40.722 87.699 1.00210.88 C ATOM 454 CG ARG 61 -0.295 41.125 89.003 1.00210.88 C ATOM 455 CD ARG 61 1.224 40.928 88.966 1.00210.88 C ATOM 456 NE ARG 61 1.781 41.352 90.283 1.00210.88 N ATOM 457 CZ ARG 61 1.994 40.435 91.271 1.00210.88 C ATOM 458 NH1 ARG 61 1.716 39.117 91.050 1.00210.88 N ATOM 459 NH2 ARG 61 2.499 40.833 92.475 1.00210.88 N ATOM 460 C ARG 61 -2.970 40.795 86.258 1.00210.88 C ATOM 461 O ARG 61 -3.613 39.754 86.125 1.00210.88 O ATOM 462 N CYS 62 -2.728 41.628 85.230 1.00104.43 N ATOM 463 CA CYS 62 -3.187 41.292 83.917 1.00104.43 C ATOM 464 CB CYS 62 -3.866 42.459 83.178 1.00104.43 C ATOM 465 SG CYS 62 -2.726 43.838 82.860 1.00104.43 S ATOM 466 C CYS 62 -1.988 40.901 83.123 1.00104.43 C ATOM 467 O CYS 62 -0.854 41.184 83.508 1.00104.43 O ATOM 468 N PHE 63 -2.213 40.204 81.994 1.00189.56 N ATOM 469 CA PHE 63 -1.107 39.805 81.179 1.00189.56 C ATOM 470 CB PHE 63 -1.226 38.360 80.669 1.00189.56 C ATOM 471 CG PHE 63 -1.322 37.489 81.875 1.00189.56 C ATOM 472 CD1 PHE 63 -2.547 37.238 82.449 1.00189.56 C ATOM 473 CD2 PHE 63 -0.196 36.932 82.436 1.00189.56 C ATOM 474 CE1 PHE 63 -2.651 36.440 83.564 1.00189.56 C ATOM 475 CE2 PHE 63 -0.293 36.133 83.551 1.00189.56 C ATOM 476 CZ PHE 63 -1.522 35.884 84.116 1.00189.56 C ATOM 477 C PHE 63 -1.135 40.704 79.990 1.00189.56 C ATOM 478 O PHE 63 -2.171 40.861 79.346 1.00189.56 O ATOM 479 N GLU 64 0.010 41.336 79.670 1.00301.41 N ATOM 480 CA GLU 64 0.006 42.248 78.567 1.00301.41 C ATOM 481 CB GLU 64 0.295 43.698 78.986 1.00301.41 C ATOM 482 CG GLU 64 0.147 44.704 77.846 1.00301.41 C ATOM 483 CD GLU 64 0.483 46.081 78.397 1.00301.41 C ATOM 484 OE1 GLU 64 1.089 46.147 79.500 1.00301.41 O ATOM 485 OE2 GLU 64 0.142 47.087 77.720 1.00301.41 O ATOM 486 C GLU 64 1.083 41.849 77.612 1.00301.41 C ATOM 487 O GLU 64 2.153 41.395 78.016 1.00301.41 O ATOM 488 N LEU 65 0.802 41.987 76.302 1.00300.13 N ATOM 489 CA LEU 65 1.779 41.693 75.295 1.00300.13 C ATOM 490 CB LEU 65 1.444 40.457 74.444 1.00300.13 C ATOM 491 CG LEU 65 1.418 39.149 75.252 1.00300.13 C ATOM 492 CD1 LEU 65 0.305 39.172 76.311 1.00300.13 C ATOM 493 CD2 LEU 65 1.339 37.922 74.330 1.00300.13 C ATOM 494 C LEU 65 1.801 42.866 74.373 1.00300.13 C ATOM 495 O LEU 65 0.769 43.487 74.127 1.00300.13 O ATOM 496 N GLN 66 2.990 43.216 73.843 1.00324.06 N ATOM 497 CA GLN 66 3.049 44.334 72.949 1.00324.06 C ATOM 498 CB GLN 66 4.064 45.410 73.371 1.00324.06 C ATOM 499 CG GLN 66 3.920 46.716 72.587 1.00324.06 C ATOM 500 CD GLN 66 2.614 47.366 73.027 1.00324.06 C ATOM 501 OE1 GLN 66 1.544 46.764 72.932 1.00324.06 O ATOM 502 NE2 GLN 66 2.699 48.625 73.532 1.00324.06 N ATOM 503 C GLN 66 3.470 43.810 71.615 1.00324.06 C ATOM 504 O GLN 66 4.183 42.811 71.527 1.00324.06 O ATOM 505 N GLU 67 3.016 44.464 70.528 1.00279.13 N ATOM 506 CA GLU 67 3.364 43.987 69.223 1.00279.13 C ATOM 507 CB GLU 67 2.143 43.733 68.323 1.00279.13 C ATOM 508 CG GLU 67 1.346 44.998 68.001 1.00279.13 C ATOM 509 CD GLU 67 0.092 44.582 67.246 1.00279.13 C ATOM 510 OE1 GLU 67 -0.302 43.391 67.369 1.00279.13 O ATOM 511 OE2 GLU 67 -0.492 45.449 66.543 1.00279.13 O ATOM 512 C GLU 67 4.201 45.029 68.558 1.00279.13 C ATOM 513 O GLU 67 3.964 46.227 68.711 1.00279.13 O ATOM 514 N VAL 68 5.228 44.587 67.807 1.00112.05 N ATOM 515 CA VAL 68 6.071 45.513 67.114 1.00112.05 C ATOM 516 CB VAL 68 7.479 45.554 67.634 1.00112.05 C ATOM 517 CG1 VAL 68 8.119 44.169 67.435 1.00112.05 C ATOM 518 CG2 VAL 68 8.226 46.690 66.916 1.00112.05 C ATOM 519 C VAL 68 6.146 45.067 65.693 1.00112.05 C ATOM 520 O VAL 68 6.021 43.881 65.394 1.00112.05 O ATOM 521 N GLY 69 6.336 46.025 64.766 1.00 93.44 N ATOM 522 CA GLY 69 6.442 45.664 63.385 1.00 93.44 C ATOM 523 C GLY 69 7.355 46.656 62.746 1.00 93.44 C ATOM 524 O GLY 69 7.370 47.834 63.100 1.00 93.44 O ATOM 525 N PRO 70 8.127 46.186 61.811 1.00 75.70 N ATOM 526 CA PRO 70 9.036 47.056 61.120 1.00 75.70 C ATOM 527 CD PRO 70 8.621 44.821 61.862 1.00 75.70 C ATOM 528 CB PRO 70 10.133 46.163 60.536 1.00 75.70 C ATOM 529 CG PRO 70 9.581 44.732 60.666 1.00 75.70 C ATOM 530 C PRO 70 8.314 47.862 60.096 1.00 75.70 C ATOM 531 O PRO 70 7.254 47.443 59.628 1.00 75.70 O ATOM 532 N PRO 71 8.847 49.006 59.785 1.00 74.94 N ATOM 533 CA PRO 71 8.269 49.827 58.758 1.00 74.94 C ATOM 534 CD PRO 71 9.520 49.798 60.799 1.00 74.94 C ATOM 535 CB PRO 71 8.669 51.269 59.087 1.00 74.94 C ATOM 536 CG PRO 71 9.814 51.134 60.105 1.00 74.94 C ATOM 537 C PRO 71 8.752 49.372 57.420 1.00 74.94 C ATOM 538 O PRO 71 9.790 48.713 57.350 1.00 74.94 O ATOM 539 N ASP 72 8.008 49.694 56.346 1.00158.53 N ATOM 540 CA ASP 72 8.452 49.365 55.026 1.00158.53 C ATOM 541 CB ASP 72 7.371 48.677 54.174 1.00158.53 C ATOM 542 CG ASP 72 7.972 48.306 52.826 1.00158.53 C ATOM 543 OD1 ASP 72 9.172 48.619 52.602 1.00158.53 O ATOM 544 OD2 ASP 72 7.234 47.705 51.998 1.00158.53 O ATOM 545 C ASP 72 8.762 50.674 54.379 1.00158.53 C ATOM 546 O ASP 72 7.871 51.334 53.846 1.00158.53 O ATOM 547 N CYS 73 10.041 51.094 54.413 1.00109.71 N ATOM 548 CA CYS 73 10.357 52.369 53.842 1.00109.71 C ATOM 549 CB CYS 73 11.402 53.168 54.641 1.00109.71 C ATOM 550 SG CYS 73 13.038 52.378 54.642 1.00109.71 S ATOM 551 C CYS 73 10.921 52.141 52.483 1.00109.71 C ATOM 552 O CYS 73 11.797 51.301 52.287 1.00109.71 O ATOM 553 N ARG 74 10.398 52.885 51.491 1.00280.60 N ATOM 554 CA ARG 74 10.905 52.765 50.160 1.00280.60 C ATOM 555 CB ARG 74 9.958 51.988 49.231 1.00280.60 C ATOM 556 CG ARG 74 10.458 51.835 47.793 1.00280.60 C ATOM 557 CD ARG 74 9.563 50.927 46.948 1.00280.60 C ATOM 558 NE ARG 74 9.802 49.525 47.392 1.00280.60 N ATOM 559 CZ ARG 74 10.487 48.665 46.582 1.00280.60 C ATOM 560 NH1 ARG 74 10.871 49.065 45.334 1.00280.60 N ATOM 561 NH2 ARG 74 10.778 47.404 47.016 1.00280.60 N ATOM 562 C ARG 74 11.040 54.158 49.643 1.00280.60 C ATOM 563 O ARG 74 10.195 55.010 49.913 1.00280.60 O ATOM 564 N CYS 75 12.127 54.436 48.900 1.00109.25 N ATOM 565 CA CYS 75 12.305 55.767 48.401 1.00109.25 C ATOM 566 CB CYS 75 13.584 56.444 48.924 1.00109.25 C ATOM 567 SG CYS 75 15.090 55.562 48.413 1.00109.25 S ATOM 568 C CYS 75 12.423 55.698 46.914 1.00109.25 C ATOM 569 O CYS 75 13.110 54.833 46.374 1.00109.25 O ATOM 570 N ASP 76 11.723 56.609 46.209 1.00203.16 N ATOM 571 CA ASP 76 11.830 56.654 44.781 1.00203.16 C ATOM 572 CB ASP 76 10.515 56.328 44.038 1.00203.16 C ATOM 573 CG ASP 76 9.428 57.315 44.443 1.00203.16 C ATOM 574 OD1 ASP 76 9.323 57.609 45.664 1.00203.16 O ATOM 575 OD2 ASP 76 8.697 57.797 43.537 1.00203.16 O ATOM 576 C ASP 76 12.287 58.028 44.398 1.00203.16 C ATOM 577 O ASP 76 11.569 59.012 44.568 1.00203.16 O ATOM 578 N ASN 77 13.536 58.138 43.906 1.00197.78 N ATOM 579 CA ASN 77 14.014 59.417 43.472 1.00197.78 C ATOM 580 CB ASN 77 14.937 60.113 44.487 1.00197.78 C ATOM 581 CG ASN 77 14.078 60.629 45.634 1.00197.78 C ATOM 582 OD1 ASN 77 13.989 60.011 46.692 1.00197.78 O ATOM 583 ND2 ASN 77 13.428 61.804 45.416 1.00197.78 N ATOM 584 C ASN 77 14.811 59.200 42.232 1.00197.78 C ATOM 585 O ASN 77 15.654 58.305 42.171 1.00197.78 O ATOM 586 N LEU 78 14.549 60.012 41.189 1.00181.95 N ATOM 587 CA LEU 78 15.313 59.889 39.986 1.00181.95 C ATOM 588 CB LEU 78 14.499 59.385 38.781 1.00181.95 C ATOM 589 CG LEU 78 13.974 57.949 38.961 1.00181.95 C ATOM 590 CD1 LEU 78 13.173 57.489 37.732 1.00181.95 C ATOM 591 CD2 LEU 78 15.110 56.982 39.331 1.00181.95 C ATOM 592 C LEU 78 15.811 61.254 39.645 1.00181.95 C ATOM 593 O LEU 78 15.047 62.217 39.636 1.00181.95 O ATOM 594 N CYS 79 17.122 61.376 39.376 1.00 63.94 N ATOM 595 CA CYS 79 17.641 62.660 39.016 1.00 63.94 C ATOM 596 CB CYS 79 18.722 63.179 39.979 1.00 63.94 C ATOM 597 SG CYS 79 18.076 63.474 41.651 1.00 63.94 S ATOM 598 C CYS 79 18.277 62.504 37.679 1.00 63.94 C ATOM 599 O CYS 79 19.018 61.551 37.444 1.00 63.94 O ATOM 600 N LYS 80 17.982 63.429 36.748 1.00220.43 N ATOM 601 CA LYS 80 18.593 63.305 35.462 1.00220.43 C ATOM 602 CB LYS 80 17.724 62.538 34.455 1.00220.43 C ATOM 603 CG LYS 80 18.379 62.352 33.086 1.00220.43 C ATOM 604 CD LYS 80 17.662 61.313 32.225 1.00220.43 C ATOM 605 CE LYS 80 16.161 61.579 32.085 1.00220.43 C ATOM 606 NZ LYS 80 15.537 60.539 31.239 1.00220.43 N ATOM 607 C LYS 80 18.801 64.675 34.915 1.00220.43 C ATOM 608 O LYS 80 17.899 65.512 34.939 1.00220.43 O ATOM 609 N SER 81 20.024 64.945 34.423 1.00180.38 N ATOM 610 CA SER 81 20.263 66.216 33.818 1.00180.38 C ATOM 611 CB SER 81 20.681 67.306 34.821 1.00180.38 C ATOM 612 OG SER 81 20.903 68.536 34.144 1.00180.38 O ATOM 613 C SER 81 21.389 66.038 32.852 1.00180.38 C ATOM 614 O SER 81 22.342 65.307 33.116 1.00180.38 O ATOM 615 N TYR 82 21.283 66.693 31.683 1.00267.83 N ATOM 616 CA TYR 82 22.342 66.642 30.723 1.00267.83 C ATOM 617 CB TYR 82 21.960 65.988 29.383 1.00267.83 C ATOM 618 CG TYR 82 23.134 66.109 28.466 1.00267.83 C ATOM 619 CD1 TYR 82 24.243 65.311 28.628 1.00267.83 C ATOM 620 CD2 TYR 82 23.118 67.016 27.430 1.00267.83 C ATOM 621 CE1 TYR 82 25.322 65.421 27.780 1.00267.83 C ATOM 622 CE2 TYR 82 24.191 67.131 26.578 1.00267.83 C ATOM 623 CZ TYR 82 25.296 66.333 26.752 1.00267.83 C ATOM 624 OH TYR 82 26.398 66.450 25.879 1.00267.83 O ATOM 625 C TYR 82 22.698 68.055 30.438 1.00267.83 C ATOM 626 O TYR 82 21.831 68.885 30.172 1.00267.83 O ATOM 627 N SER 83 23.999 68.373 30.509 1.00201.93 N ATOM 628 CA SER 83 24.386 69.719 30.244 1.00201.93 C ATOM 629 CB SER 83 24.976 70.446 31.463 1.00201.93 C ATOM 630 OG SER 83 25.331 71.775 31.111 1.00201.93 O ATOM 631 C SER 83 25.436 69.664 29.197 1.00201.93 C ATOM 632 O SER 83 26.118 68.654 29.033 1.00201.93 O ATOM 633 N SER 84 25.569 70.759 28.430 1.00146.10 N ATOM 634 CA SER 84 26.560 70.789 27.403 1.00146.10 C ATOM 635 CB SER 84 25.991 70.509 26.002 1.00146.10 C ATOM 636 OG SER 84 25.040 71.506 25.661 1.00146.10 O ATOM 637 C SER 84 27.132 72.163 27.379 1.00146.10 C ATOM 638 O SER 84 26.542 73.107 27.900 1.00146.10 O ATOM 639 N CYS 85 28.338 72.295 26.795 1.00 76.26 N ATOM 640 CA CYS 85 28.934 73.590 26.682 1.00 76.26 C ATOM 641 CB CYS 85 30.246 73.743 27.469 1.00 76.26 C ATOM 642 SG CYS 85 30.964 75.402 27.284 1.00 76.26 S ATOM 643 C CYS 85 29.270 73.778 25.241 1.00 76.26 C ATOM 644 O CYS 85 29.754 72.861 24.579 1.00 76.26 O ATOM 645 N CYS 86 28.991 74.980 24.704 1.00 75.43 N ATOM 646 CA CYS 86 29.333 75.218 23.337 1.00 75.43 C ATOM 647 CB CYS 86 28.129 75.231 22.383 1.00 75.43 C ATOM 648 SG CYS 86 28.622 75.539 20.661 1.00 75.43 S ATOM 649 C CYS 86 29.954 76.573 23.269 1.00 75.43 C ATOM 650 O CYS 86 29.584 77.471 24.022 1.00 75.43 O ATOM 651 N HIS 87 30.942 76.741 22.375 1.00204.95 N ATOM 652 CA HIS 87 31.540 78.032 22.227 1.00204.95 C ATOM 653 ND1 HIS 87 33.157 80.443 23.532 1.00204.95 N ATOM 654 CG HIS 87 33.608 79.436 22.709 1.00204.95 C ATOM 655 CB HIS 87 33.014 78.060 22.673 1.00204.95 C ATOM 656 NE2 HIS 87 34.863 81.282 22.379 1.00204.95 N ATOM 657 CD2 HIS 87 34.651 79.965 22.011 1.00204.95 C ATOM 658 CE1 HIS 87 33.942 81.524 23.294 1.00204.95 C ATOM 659 C HIS 87 31.484 78.352 20.771 1.00204.95 C ATOM 660 O HIS 87 32.264 77.824 19.981 1.00204.95 O ATOM 661 N ASP 88 30.533 79.217 20.369 1.00197.37 N ATOM 662 CA ASP 88 30.437 79.559 18.983 1.00197.37 C ATOM 663 CB ASP 88 29.180 78.983 18.299 1.00197.37 C ATOM 664 CG ASP 88 29.272 79.212 16.793 1.00197.37 C ATOM 665 OD1 ASP 88 29.521 80.373 16.374 1.00197.37 O ATOM 666 OD2 ASP 88 29.080 78.221 16.038 1.00197.37 O ATOM 667 C ASP 88 30.351 81.046 18.897 1.00197.37 C ATOM 668 O ASP 88 29.261 81.615 18.929 1.00197.37 O ATOM 669 N PHE 89 31.507 81.724 18.793 1.00230.02 N ATOM 670 CA PHE 89 31.458 83.146 18.651 1.00230.02 C ATOM 671 CB PHE 89 32.311 83.890 19.699 1.00230.02 C ATOM 672 CG PHE 89 32.018 85.350 19.609 1.00230.02 C ATOM 673 CD1 PHE 89 30.915 85.880 20.239 1.00230.02 C ATOM 674 CD2 PHE 89 32.849 86.194 18.906 1.00230.02 C ATOM 675 CE1 PHE 89 30.640 87.226 20.163 1.00230.02 C ATOM 676 CE2 PHE 89 32.577 87.540 18.827 1.00230.02 C ATOM 677 CZ PHE 89 31.471 88.059 19.455 1.00230.02 C ATOM 678 C PHE 89 32.031 83.419 17.302 1.00230.02 C ATOM 679 O PHE 89 33.139 82.981 16.994 1.00230.02 O ATOM 680 N ASP 90 31.275 84.122 16.437 1.00202.65 N ATOM 681 CA ASP 90 31.791 84.389 15.129 1.00202.65 C ATOM 682 CB ASP 90 30.963 83.740 14.004 1.00202.65 C ATOM 683 CG ASP 90 31.793 83.765 12.727 1.00202.65 C ATOM 684 OD1 ASP 90 32.881 84.402 12.742 1.00202.65 O ATOM 685 OD2 ASP 90 31.355 83.143 11.723 1.00202.65 O ATOM 686 C ASP 90 31.751 85.867 14.931 1.00202.65 C ATOM 687 O ASP 90 30.676 86.456 14.824 1.00202.65 O ATOM 688 N GLU 91 32.931 86.516 14.884 1.00289.02 N ATOM 689 CA GLU 91 32.927 87.938 14.713 1.00289.02 C ATOM 690 CB GLU 91 33.775 88.699 15.746 1.00289.02 C ATOM 691 CG GLU 91 35.280 88.457 15.594 1.00289.02 C ATOM 692 CD GLU 91 35.627 87.106 16.203 1.00289.02 C ATOM 693 OE1 GLU 91 34.879 86.652 17.108 1.00289.02 O ATOM 694 OE2 GLU 91 36.657 86.517 15.776 1.00289.02 O ATOM 695 C GLU 91 33.531 88.241 13.383 1.00289.02 C ATOM 696 O GLU 91 34.555 87.671 13.008 1.00289.02 O ATOM 697 N LEU 92 32.887 89.146 12.622 1.00225.12 N ATOM 698 CA LEU 92 33.423 89.536 11.353 1.00225.12 C ATOM 699 CB LEU 92 32.557 89.107 10.158 1.00225.12 C ATOM 700 CG LEU 92 32.451 87.580 9.994 1.00225.12 C ATOM 701 CD1 LEU 92 31.732 86.936 11.191 1.00225.12 C ATOM 702 CD2 LEU 92 31.817 87.207 8.645 1.00225.12 C ATOM 703 C LEU 92 33.474 91.027 11.339 1.00225.12 C ATOM 704 O LEU 92 32.533 91.695 11.765 1.00225.12 O ATOM 705 N CYS 93 34.600 91.595 10.868 1.00 68.51 N ATOM 706 CA CYS 93 34.679 93.020 10.784 1.00 68.51 C ATOM 707 CB CYS 93 35.627 93.648 11.822 1.00 68.51 C ATOM 708 SG CYS 93 35.039 93.408 13.526 1.00 68.51 S ATOM 709 C CYS 93 35.221 93.343 9.433 1.00 68.51 C ATOM 710 O CYS 93 36.248 92.805 9.021 1.00 68.51 O ATOM 711 N LEU 94 34.526 94.226 8.693 1.00222.73 N ATOM 712 CA LEU 94 35.013 94.576 7.394 1.00222.73 C ATOM 713 CB LEU 94 34.092 94.117 6.250 1.00222.73 C ATOM 714 CG LEU 94 33.920 92.589 6.178 1.00222.73 C ATOM 715 CD1 LEU 94 35.260 91.889 5.900 1.00222.73 C ATOM 716 CD2 LEU 94 33.201 92.047 7.424 1.00222.73 C ATOM 717 C LEU 94 35.082 96.063 7.324 1.00222.73 C ATOM 718 O LEU 94 34.141 96.757 7.705 1.00222.73 O ATOM 719 N LYS 95 36.222 96.596 6.846 1.00278.70 N ATOM 720 CA LYS 95 36.335 98.016 6.702 1.00278.70 C ATOM 721 CB LYS 95 37.559 98.628 7.405 1.00278.70 C ATOM 722 CG LYS 95 37.437 98.651 8.930 1.00278.70 C ATOM 723 CD LYS 95 37.507 97.268 9.577 1.00278.70 C ATOM 724 CE LYS 95 38.908 96.898 10.068 1.00278.70 C ATOM 725 NZ LYS 95 39.846 96.841 8.925 1.00278.70 N ATOM 726 C LYS 95 36.482 98.279 5.243 1.00278.70 C ATOM 727 O LYS 95 37.176 97.548 4.540 1.00278.70 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 94.78 30.8 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 99.39 26.8 56 100.0 56 ARMSMC BURIED . . . . . . . . 81.90 40.9 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 92.21 41.7 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 91.00 42.9 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 86.05 48.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 104.88 27.3 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 87.72 39.1 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 71.58 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 97.51 33.3 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 34.14 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 101.20 0.0 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 99.54 0.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 104.24 0.0 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 89.73 0.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 72.15 40.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 72.15 40.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 71.23 50.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 75.72 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 32.41 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 32.41 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.8102 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 32.99 29 100.0 29 CRMSCA BURIED . . . . . . . . 30.81 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 32.24 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 32.75 142 100.0 142 CRMSMC BURIED . . . . . . . . 30.88 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 33.18 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 33.22 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 34.32 103 100.0 103 CRMSSC BURIED . . . . . . . . 30.04 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 32.72 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 33.56 219 100.0 219 CRMSALL BURIED . . . . . . . . 30.43 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 149.429 0.695 0.731 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 156.088 0.706 0.744 29 100.0 29 ERRCA BURIED . . . . . . . . 131.874 0.667 0.697 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 150.960 0.700 0.735 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 158.388 0.713 0.750 142 100.0 142 ERRMC BURIED . . . . . . . . 131.782 0.666 0.696 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 180.171 0.736 0.768 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 178.790 0.732 0.765 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 183.850 0.737 0.773 103 100.0 103 ERRSC BURIED . . . . . . . . 170.697 0.731 0.757 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 164.000 0.715 0.749 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 169.230 0.722 0.758 219 100.0 219 ERRALL BURIED . . . . . . . . 150.362 0.698 0.726 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 0 0 9 40 40 DISTCA CA (P) 0.00 0.00 0.00 0.00 22.50 40 DISTCA CA (RMS) 0.00 0.00 0.00 0.00 8.28 DISTCA ALL (N) 0 0 0 3 54 303 303 DISTALL ALL (P) 0.00 0.00 0.00 0.99 17.82 303 DISTALL ALL (RMS) 0.00 0.00 0.00 4.56 7.98 DISTALL END of the results output