####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 45 ( 345), selected 45 , name T0543TS016_1-D2 # Molecule2: number of CA atoms 45 ( 345), selected 45 , name T0543-D2.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS016_1-D2.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 45 96 - 140 2.06 2.06 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 44 96 - 139 1.82 2.08 LONGEST_CONTINUOUS_SEGMENT: 44 97 - 140 1.99 2.06 LCS_AVERAGE: 97.78 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 114 - 139 0.97 2.13 LCS_AVERAGE: 42.42 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 45 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT T 96 T 96 3 44 45 0 3 3 3 10 31 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT A 97 A 97 4 44 45 3 4 4 5 11 20 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 98 R 98 4 44 45 3 4 6 15 18 22 39 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 99 G 99 12 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT W 100 W 100 12 44 45 9 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 101 E 101 12 44 45 9 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 102 C 102 12 44 45 9 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT T 103 T 103 12 44 45 9 19 33 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT K 104 K 104 12 44 45 9 19 33 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT D 105 D 105 12 44 45 8 19 30 38 39 40 41 42 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 106 R 106 12 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 107 C 107 12 44 45 6 19 33 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 108 G 108 12 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 109 E 109 12 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT V 110 V 110 12 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 111 R 111 12 44 45 3 4 10 21 35 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT N 112 N 112 5 44 45 8 23 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 113 E 113 8 44 45 3 4 14 23 33 39 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 114 E 114 26 44 45 4 15 31 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT N 115 N 115 26 44 45 4 22 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT A 116 A 116 26 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 117 C 117 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT H 118 H 118 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 119 C 119 26 44 45 7 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT S 120 S 120 26 44 45 9 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 121 E 121 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT D 122 D 122 26 44 45 9 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 123 C 123 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT L 124 L 124 26 44 45 4 18 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT S 125 S 125 26 44 45 4 22 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT R 126 R 126 26 44 45 4 25 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 127 G 127 26 44 45 5 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT D 128 D 128 26 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 129 C 129 26 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 130 C 130 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT T 131 T 131 26 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT N 132 N 132 26 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT Y 133 Y 133 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT Q 134 Q 134 26 44 45 8 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT V 135 V 135 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT V 136 V 136 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT C 137 C 137 26 44 45 7 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT K 138 K 138 26 44 45 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT G 139 G 139 26 44 45 3 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 LCS_GDT E 140 E 140 3 44 45 0 3 3 4 4 7 24 24 32 42 44 45 45 45 45 45 45 45 45 45 LCS_AVERAGE LCS_A: 80.07 ( 42.42 97.78 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 27 34 38 39 40 41 43 44 44 44 45 45 45 45 45 45 45 45 45 GDT PERCENT_AT 22.22 60.00 75.56 84.44 86.67 88.89 91.11 95.56 97.78 97.78 97.78 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.38 0.67 0.90 1.01 1.09 1.22 1.39 1.80 1.82 1.82 1.82 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 GDT RMS_ALL_AT 2.32 2.20 2.14 2.17 2.15 2.13 2.14 2.08 2.08 2.08 2.08 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 2.06 # Checking swapping # possible swapping detected: D 105 D 105 # possible swapping detected: E 109 E 109 # possible swapping detected: E 121 E 121 # possible swapping detected: E 140 E 140 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA T 96 T 96 3.983 0 0.159 0.263 5.536 37.857 46.327 LGA A 97 A 97 4.653 0 0.468 0.474 5.679 37.381 34.190 LGA R 98 R 98 4.528 0 0.305 1.101 16.882 43.929 17.619 LGA G 99 G 99 0.194 0 0.270 0.270 1.719 93.214 93.214 LGA W 100 W 100 1.096 0 0.313 1.272 5.553 88.214 68.810 LGA E 101 E 101 1.276 0 0.050 0.445 2.933 79.286 71.323 LGA C 102 C 102 1.148 0 0.029 0.890 2.737 79.286 75.952 LGA T 103 T 103 1.839 0 0.057 0.199 2.999 72.857 67.211 LGA K 104 K 104 2.084 0 0.048 1.129 6.386 66.786 57.513 LGA D 105 D 105 2.610 0 0.120 1.044 6.176 60.952 48.333 LGA R 106 R 106 1.302 0 0.106 0.914 4.575 79.286 70.519 LGA C 107 C 107 1.792 0 0.615 1.061 4.401 61.905 58.254 LGA G 108 G 108 0.976 0 0.334 0.334 1.068 85.952 85.952 LGA E 109 E 109 1.367 0 0.069 0.802 3.679 81.429 67.513 LGA V 110 V 110 1.615 0 0.435 1.359 5.729 61.905 54.762 LGA R 111 R 111 3.331 0 0.019 1.145 15.364 57.738 23.463 LGA N 112 N 112 0.793 0 0.062 1.200 7.032 79.524 55.357 LGA E 113 E 113 4.244 0 0.213 1.183 11.517 46.786 23.492 LGA E 114 E 114 1.864 0 0.528 0.639 2.721 65.000 64.021 LGA N 115 N 115 0.791 0 0.049 0.239 1.236 95.238 91.726 LGA A 116 A 116 0.691 0 0.063 0.085 1.119 90.476 88.667 LGA C 117 C 117 0.536 0 0.064 0.169 1.226 90.476 88.968 LGA H 118 H 118 0.870 0 0.069 0.147 1.244 88.214 87.762 LGA C 119 C 119 0.501 0 0.077 0.163 0.823 92.857 92.063 LGA S 120 S 120 0.742 0 0.060 0.133 1.429 92.857 89.048 LGA E 121 E 121 1.084 0 0.111 1.080 4.120 81.429 72.804 LGA D 122 D 122 0.509 0 0.206 1.207 4.147 88.214 78.274 LGA C 123 C 123 0.452 0 0.056 0.734 2.699 92.976 88.175 LGA L 124 L 124 1.703 0 0.057 1.459 4.420 75.238 70.774 LGA S 125 S 125 2.193 0 0.175 0.176 2.844 64.881 64.841 LGA R 126 R 126 1.715 0 0.148 1.328 3.855 72.857 70.216 LGA G 127 G 127 0.862 0 0.146 0.146 0.967 90.476 90.476 LGA D 128 D 128 0.897 0 0.140 1.197 3.885 88.214 77.917 LGA C 129 C 129 1.018 0 0.045 0.175 1.224 90.595 87.540 LGA C 130 C 130 0.291 0 0.040 0.068 1.112 95.238 92.143 LGA T 131 T 131 1.296 0 0.147 0.137 2.185 83.690 76.735 LGA N 132 N 132 1.289 0 0.079 1.177 3.299 85.952 76.548 LGA Y 133 Y 133 0.446 0 0.047 0.467 1.232 92.857 89.762 LGA Q 134 Q 134 1.149 0 0.071 1.205 5.741 88.214 69.683 LGA V 135 V 135 0.710 0 0.079 0.091 1.198 92.857 90.544 LGA V 136 V 136 0.092 0 0.055 0.064 1.001 97.619 93.265 LGA C 137 C 137 0.828 0 0.116 0.169 1.129 90.476 87.460 LGA K 138 K 138 0.928 0 0.151 0.666 4.873 86.071 74.180 LGA G 139 G 139 1.318 0 0.694 0.694 3.862 66.310 66.310 LGA E 140 E 140 6.954 0 0.678 1.153 14.280 13.095 5.979 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 45 180 180 100.00 345 345 100.00 45 SUMMARY(RMSD_GDC): 2.057 2.089 3.815 77.037 69.904 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 45 45 4.0 43 1.80 85.000 90.780 2.258 LGA_LOCAL RMSD: 1.805 Number of atoms: 43 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.083 Number of assigned atoms: 45 Std_ASGN_ATOMS RMSD: 2.057 Standard rmsd on all 45 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.019412 * X + -0.918521 * Y + -0.394895 * Z + -73.599976 Y_new = -0.727401 * X + 0.258001 * Y + -0.635864 * Z + 113.865562 Z_new = 0.685938 * X + 0.299591 * Y + -0.663125 * Z + 13.186696 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.544115 -0.755892 2.717254 [DEG: -88.4713 -43.3094 155.6872 ] ZXZ: -0.555744 2.295782 1.159007 [DEG: -31.8418 131.5386 66.4062 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS016_1-D2 REMARK 2: T0543-D2.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS016_1-D2.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 45 45 4.0 43 1.80 90.780 2.06 REMARK ---------------------------------------------------------- MOLECULE T0543TS016_1-D2 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2cqw_A ATOM 728 N THR 96 14.390 84.595 23.699 1.00 99.90 N ATOM 729 CA THR 96 15.621 85.147 23.212 1.00 99.90 C ATOM 730 C THR 96 15.428 86.217 22.154 1.00 99.90 C ATOM 731 O THR 96 16.368 86.589 21.450 1.00 99.90 O ATOM 732 CB THR 96 16.474 84.034 22.672 1.00 99.90 C ATOM 733 OG1 THR 96 16.551 83.005 23.648 1.00 99.90 O ATOM 734 CG2 THR 96 17.900 84.538 22.390 1.00 99.90 C ATOM 735 N ALA 97 14.222 86.808 22.053 1.00 99.90 N ATOM 736 CA ALA 97 13.990 87.870 21.107 1.00 99.90 C ATOM 737 C ALA 97 14.173 87.379 19.697 1.00 99.90 C ATOM 738 O ALA 97 14.510 88.158 18.806 1.00 99.90 O ATOM 739 CB ALA 97 14.922 89.072 21.335 1.00 99.90 C ATOM 740 N ARG 98 13.988 86.066 19.451 1.00 99.90 N ATOM 741 CA ARG 98 14.131 85.583 18.106 1.00 99.90 C ATOM 742 C ARG 98 13.010 86.048 17.227 1.00 99.90 C ATOM 743 O ARG 98 13.232 86.657 16.181 1.00 99.90 O ATOM 744 CB ARG 98 14.206 84.051 18.007 1.00 99.90 C ATOM 745 CG ARG 98 15.541 83.485 18.485 1.00 99.90 C ATOM 746 CD ARG 98 15.646 81.965 18.360 1.00 99.90 C ATOM 747 NE ARG 98 16.992 81.579 18.862 1.00 99.90 N ATOM 748 CZ ARG 98 17.316 80.261 19.005 1.00 99.90 C ATOM 749 NH1 ARG 98 16.417 79.292 18.668 1.00 99.90 H ATOM 750 NH2 ARG 98 18.545 79.913 19.487 1.00 99.90 H ATOM 751 N GLY 99 11.760 85.814 17.649 1.00 99.90 N ATOM 752 CA GLY 99 10.664 86.175 16.800 1.00 99.90 C ATOM 753 C GLY 99 10.686 85.233 15.645 1.00 99.90 C ATOM 754 O GLY 99 11.666 85.121 14.910 1.00 99.90 O ATOM 755 N TRP 100 9.582 84.505 15.446 1.00 99.90 N ATOM 756 CA TRP 100 9.570 83.627 14.324 1.00 99.90 C ATOM 757 C TRP 100 8.464 84.039 13.429 1.00 99.90 C ATOM 758 O TRP 100 7.489 83.312 13.261 1.00 99.90 O ATOM 759 CB TRP 100 9.346 82.139 14.649 1.00 99.90 C ATOM 760 CG TRP 100 10.574 81.381 15.094 1.00 99.90 C ATOM 761 CD1 TRP 100 11.516 80.783 14.312 1.00 99.90 C ATOM 762 CD2 TRP 100 10.949 81.105 16.452 1.00 99.90 C ATOM 763 NE1 TRP 100 12.453 80.154 15.095 1.00 99.90 N ATOM 764 CE2 TRP 100 12.117 80.340 16.415 1.00 99.90 C ATOM 765 CE3 TRP 100 10.369 81.452 17.633 1.00 99.90 C ATOM 766 CZ2 TRP 100 12.727 79.910 17.557 1.00 99.90 C ATOM 767 CZ3 TRP 100 10.994 81.014 18.779 1.00 99.90 C ATOM 768 CH2 TRP 100 12.145 80.260 18.751 1.00 99.90 H ATOM 769 N GLU 101 8.597 85.215 12.800 1.00 99.90 N ATOM 770 CA GLU 101 7.557 85.607 11.899 1.00 99.90 C ATOM 771 C GLU 101 8.202 86.173 10.680 1.00 99.90 C ATOM 772 O GLU 101 9.184 86.908 10.781 1.00 99.90 O ATOM 773 CB GLU 101 6.619 86.699 12.441 1.00 99.90 C ATOM 774 CG GLU 101 5.659 86.218 13.529 1.00 99.90 C ATOM 775 CD GLU 101 4.699 87.362 13.806 1.00 99.90 C ATOM 776 OE1 GLU 101 5.186 88.502 14.022 1.00 99.90 O ATOM 777 OE2 GLU 101 3.466 87.111 13.795 1.00 99.90 O ATOM 778 N CYS 102 7.664 85.835 9.486 1.00 99.90 N ATOM 779 CA CYS 102 8.226 86.404 8.292 1.00 99.90 C ATOM 780 C CYS 102 7.397 87.579 7.923 1.00 99.90 C ATOM 781 O CYS 102 6.203 87.637 8.219 1.00 99.90 O ATOM 782 CB CYS 102 8.372 85.480 7.013 1.00 99.90 C ATOM 783 SG CYS 102 6.983 85.164 5.824 1.00 99.90 S ATOM 784 N THR 103 8.048 88.584 7.318 1.00 99.90 N ATOM 785 CA THR 103 7.329 89.714 6.825 1.00 99.90 C ATOM 786 C THR 103 7.450 89.624 5.336 1.00 99.90 C ATOM 787 O THR 103 8.323 88.930 4.821 1.00 99.90 O ATOM 788 CB THR 103 7.898 91.043 7.236 1.00 99.90 C ATOM 789 OG1 THR 103 9.222 91.180 6.743 1.00 99.90 O ATOM 790 CG2 THR 103 7.888 91.145 8.767 1.00 99.90 C ATOM 791 N LYS 104 6.572 90.333 4.606 1.00 99.90 N ATOM 792 CA LYS 104 6.569 90.284 3.170 1.00 99.90 C ATOM 793 C LYS 104 7.912 90.724 2.691 1.00 99.90 C ATOM 794 O LYS 104 8.461 90.163 1.743 1.00 99.90 O ATOM 795 CB LYS 104 5.573 91.284 2.556 1.00 99.90 C ATOM 796 CG LYS 104 4.098 91.043 2.894 1.00 99.90 C ATOM 797 CD LYS 104 3.497 89.781 2.274 1.00 99.90 C ATOM 798 CE LYS 104 2.025 89.581 2.634 1.00 99.90 C ATOM 799 NZ LYS 104 1.418 88.563 1.749 1.00 99.90 N ATOM 800 N ASP 105 8.464 91.765 3.337 1.00 99.90 N ATOM 801 CA ASP 105 9.734 92.318 2.952 1.00 99.90 C ATOM 802 C ASP 105 10.820 91.307 3.160 1.00 99.90 C ATOM 803 O ASP 105 11.764 91.240 2.377 1.00 99.90 O ATOM 804 CB ASP 105 10.099 93.580 3.751 1.00 99.90 C ATOM 805 CG ASP 105 9.190 94.707 3.280 1.00 99.90 C ATOM 806 OD1 ASP 105 8.722 94.646 2.112 1.00 99.90 O ATOM 807 OD2 ASP 105 8.951 95.647 4.085 1.00 99.90 O ATOM 808 N ARG 106 10.718 90.502 4.232 1.00 99.90 N ATOM 809 CA ARG 106 11.709 89.521 4.576 1.00 99.90 C ATOM 810 C ARG 106 11.750 88.399 3.575 1.00 99.90 C ATOM 811 O ARG 106 12.788 87.766 3.402 1.00 99.90 O ATOM 812 CB ARG 106 11.504 88.904 5.970 1.00 99.90 C ATOM 813 CG ARG 106 11.875 89.864 7.104 1.00 99.90 C ATOM 814 CD ARG 106 11.801 89.235 8.497 1.00 99.90 C ATOM 815 NE ARG 106 12.325 90.238 9.465 1.00 99.90 N ATOM 816 CZ ARG 106 13.661 90.275 9.746 1.00 99.90 C ATOM 817 NH1 ARG 106 14.156 91.201 10.616 1.00 99.90 H ATOM 818 NH2 ARG 106 14.504 89.382 9.150 1.00 99.90 H ATOM 819 N CYS 107 10.644 88.135 2.855 1.00 99.90 N ATOM 820 CA CYS 107 10.535 86.956 2.034 1.00 99.90 C ATOM 821 C CYS 107 11.695 86.768 1.088 1.00 99.90 C ATOM 822 O CYS 107 12.231 85.667 0.993 1.00 99.90 O ATOM 823 CB CYS 107 9.253 86.957 1.185 1.00 99.90 C ATOM 824 SG CYS 107 9.101 85.476 0.143 1.00 99.90 S ATOM 825 N GLY 108 12.141 87.787 0.343 1.00 99.90 N ATOM 826 CA GLY 108 13.249 87.481 -0.516 1.00 99.90 C ATOM 827 C GLY 108 14.425 88.210 0.031 1.00 99.90 C ATOM 828 O GLY 108 14.952 89.134 -0.586 1.00 99.90 O ATOM 829 N GLU 109 14.896 87.772 1.209 1.00 99.90 N ATOM 830 CA GLU 109 15.999 88.450 1.805 1.00 99.90 C ATOM 831 C GLU 109 17.175 87.529 1.765 1.00 99.90 C ATOM 832 O GLU 109 17.052 86.334 2.031 1.00 99.90 O ATOM 833 CB GLU 109 15.748 88.837 3.274 1.00 99.90 C ATOM 834 CG GLU 109 16.805 89.778 3.850 1.00 99.90 C ATOM 835 CD GLU 109 16.385 90.144 5.266 1.00 99.90 C ATOM 836 OE1 GLU 109 15.387 89.551 5.757 1.00 99.90 O ATOM 837 OE2 GLU 109 17.055 91.018 5.877 1.00 99.90 O ATOM 838 N VAL 110 18.353 88.054 1.374 1.00 99.90 N ATOM 839 CA VAL 110 19.514 87.214 1.380 1.00 99.90 C ATOM 840 C VAL 110 20.438 87.730 2.440 1.00 99.90 C ATOM 841 O VAL 110 21.640 87.859 2.210 1.00 99.90 O ATOM 842 CB VAL 110 20.271 87.259 0.079 1.00 99.90 C ATOM 843 CG1 VAL 110 19.407 86.638 -1.030 1.00 99.90 C ATOM 844 CG2 VAL 110 20.659 88.722 -0.207 1.00 99.90 C ATOM 845 N ARG 111 19.913 88.003 3.649 1.00 99.90 N ATOM 846 CA ARG 111 20.755 88.500 4.700 1.00 99.90 C ATOM 847 C ARG 111 20.081 88.171 6.000 1.00 99.90 C ATOM 848 O ARG 111 18.929 88.548 6.209 1.00 99.90 O ATOM 849 CB ARG 111 20.912 90.029 4.608 1.00 99.90 C ATOM 850 CG ARG 111 21.795 90.681 5.671 1.00 99.90 C ATOM 851 CD ARG 111 22.025 92.166 5.377 1.00 99.90 C ATOM 852 NE ARG 111 22.888 92.728 6.450 1.00 99.90 N ATOM 853 CZ ARG 111 22.320 93.380 7.505 1.00 99.90 C ATOM 854 NH1 ARG 111 20.961 93.471 7.595 1.00 99.90 H ATOM 855 NH2 ARG 111 23.108 93.953 8.458 1.00 99.90 H ATOM 856 N ASN 112 20.771 87.436 6.902 1.00 99.90 N ATOM 857 CA ASN 112 20.194 87.116 8.182 1.00 99.90 C ATOM 858 C ASN 112 21.270 87.183 9.216 1.00 99.90 C ATOM 859 O ASN 112 22.132 86.305 9.273 1.00 99.90 O ATOM 860 CB ASN 112 19.649 85.682 8.287 1.00 99.90 C ATOM 861 CG ASN 112 18.262 85.618 7.677 1.00 99.90 C ATOM 862 OD1 ASN 112 17.351 86.327 8.098 1.00 99.90 O ATOM 863 ND2 ASN 112 18.091 84.732 6.661 1.00 99.90 N ATOM 864 N GLU 113 21.314 88.267 10.013 1.00 99.90 N ATOM 865 CA GLU 113 22.284 88.301 11.067 1.00 99.90 C ATOM 866 C GLU 113 21.828 87.526 12.261 1.00 99.90 C ATOM 867 O GLU 113 22.458 86.555 12.681 1.00 99.90 O ATOM 868 CB GLU 113 22.578 89.739 11.515 1.00 99.90 C ATOM 869 CG GLU 113 23.265 90.552 10.417 1.00 99.90 C ATOM 870 CD GLU 113 23.243 92.014 10.824 1.00 99.90 C ATOM 871 OE1 GLU 113 22.142 92.510 11.187 1.00 99.90 O ATOM 872 OE2 GLU 113 24.326 92.659 10.777 1.00 99.90 O ATOM 873 N GLU 114 20.666 87.925 12.821 1.00 99.90 N ATOM 874 CA GLU 114 20.207 87.269 14.004 1.00 99.90 C ATOM 875 C GLU 114 18.737 87.064 13.874 1.00 99.90 C ATOM 876 O GLU 114 17.947 87.972 14.137 1.00 99.90 O ATOM 877 CB GLU 114 20.398 88.074 15.304 1.00 99.90 C ATOM 878 CG GLU 114 21.852 88.269 15.739 1.00 99.90 C ATOM 879 CD GLU 114 22.330 89.627 15.246 1.00 99.90 C ATOM 880 OE1 GLU 114 21.465 90.446 14.830 1.00 99.90 O ATOM 881 OE2 GLU 114 23.566 89.871 15.292 1.00 99.90 O ATOM 882 N ASN 115 18.331 85.847 13.475 1.00 99.90 N ATOM 883 CA ASN 115 16.934 85.562 13.366 1.00 99.90 C ATOM 884 C ASN 115 16.745 84.111 13.671 1.00 99.90 C ATOM 885 O ASN 115 17.595 83.274 13.374 1.00 99.90 O ATOM 886 CB ASN 115 16.346 85.835 11.967 1.00 99.90 C ATOM 887 CG ASN 115 16.268 87.344 11.759 1.00 99.90 C ATOM 888 OD1 ASN 115 15.611 88.059 12.515 1.00 99.90 O ATOM 889 ND2 ASN 115 16.961 87.848 10.704 1.00 99.90 N ATOM 890 N ALA 116 15.624 83.787 14.329 1.00 99.90 N ATOM 891 CA ALA 116 15.278 82.443 14.674 1.00 99.90 C ATOM 892 C ALA 116 14.975 81.662 13.433 1.00 99.90 C ATOM 893 O ALA 116 15.277 80.475 13.350 1.00 99.90 O ATOM 894 CB ALA 116 14.038 82.398 15.569 1.00 99.90 C ATOM 895 N CYS 117 14.326 82.301 12.444 1.00 99.90 N ATOM 896 CA CYS 117 13.953 81.598 11.255 1.00 99.90 C ATOM 897 C CYS 117 14.349 82.429 10.090 1.00 99.90 C ATOM 898 O CYS 117 14.529 83.640 10.209 1.00 99.90 O ATOM 899 CB CYS 117 12.439 81.361 11.176 1.00 99.90 C ATOM 900 SG CYS 117 11.540 82.937 11.308 1.00 99.90 S ATOM 901 N HIS 118 14.494 81.791 8.916 1.00 99.90 N ATOM 902 CA HIS 118 14.937 82.564 7.807 1.00 99.90 C ATOM 903 C HIS 118 13.788 82.711 6.873 1.00 99.90 C ATOM 904 O HIS 118 12.991 81.796 6.671 1.00 99.90 O ATOM 905 CB HIS 118 16.168 81.943 7.129 1.00 99.90 C ATOM 906 CG HIS 118 17.270 81.661 8.105 1.00 99.90 C ATOM 907 ND1 HIS 118 17.405 80.467 8.771 1.00 99.90 N ATOM 908 CD2 HIS 118 18.292 82.445 8.540 1.00 99.90 C ATOM 909 CE1 HIS 118 18.494 80.584 9.571 1.00 99.90 C ATOM 910 NE2 HIS 118 19.067 81.769 9.466 1.00 99.90 N ATOM 911 N CYS 119 13.653 83.903 6.277 1.00 99.90 N ATOM 912 CA CYS 119 12.489 84.113 5.476 1.00 99.90 C ATOM 913 C CYS 119 12.823 84.073 4.014 1.00 99.90 C ATOM 914 O CYS 119 11.993 84.465 3.198 1.00 99.90 O ATOM 915 CB CYS 119 11.865 85.496 5.730 1.00 99.90 C ATOM 916 SG CYS 119 11.396 85.740 7.469 1.00 99.90 S ATOM 917 N SER 120 14.015 83.577 3.630 1.00 99.90 N ATOM 918 CA SER 120 14.406 83.581 2.245 1.00 99.90 C ATOM 919 C SER 120 13.969 82.323 1.541 1.00 99.90 C ATOM 920 O SER 120 13.454 81.381 2.140 1.00 99.90 O ATOM 921 CB SER 120 15.919 83.750 2.034 1.00 99.90 C ATOM 922 OG SER 120 16.623 82.662 2.610 1.00 99.90 O ATOM 923 N GLU 121 14.187 82.291 0.211 1.00 99.90 N ATOM 924 CA GLU 121 13.817 81.195 -0.641 1.00 99.90 C ATOM 925 C GLU 121 14.571 79.970 -0.225 1.00 99.90 C ATOM 926 O GLU 121 14.073 78.851 -0.351 1.00 99.90 O ATOM 927 CB GLU 121 14.161 81.438 -2.119 1.00 99.90 C ATOM 928 CG GLU 121 13.318 82.521 -2.790 1.00 99.90 C ATOM 929 CD GLU 121 13.779 82.628 -4.236 1.00 99.90 C ATOM 930 OE1 GLU 121 14.957 83.021 -4.454 1.00 99.90 O ATOM 931 OE2 GLU 121 12.964 82.310 -5.143 1.00 99.90 O ATOM 932 N ASP 122 15.807 80.152 0.276 1.00 99.90 N ATOM 933 CA ASP 122 16.651 79.052 0.661 1.00 99.90 C ATOM 934 C ASP 122 15.971 78.273 1.738 1.00 99.90 C ATOM 935 O ASP 122 16.082 77.049 1.802 1.00 99.90 O ATOM 936 CB ASP 122 18.002 79.507 1.248 1.00 99.90 C ATOM 937 CG ASP 122 18.897 80.026 0.133 1.00 99.90 C ATOM 938 OD1 ASP 122 18.634 79.682 -1.050 1.00 99.90 O ATOM 939 OD2 ASP 122 19.864 80.767 0.454 1.00 99.90 O ATOM 940 N CYS 123 15.231 78.976 2.605 1.00 99.90 N ATOM 941 CA CYS 123 14.610 78.396 3.759 1.00 99.90 C ATOM 942 C CYS 123 13.641 77.353 3.330 1.00 99.90 C ATOM 943 O CYS 123 13.457 76.357 4.025 1.00 99.90 O ATOM 944 CB CYS 123 13.808 79.434 4.526 1.00 99.90 C ATOM 945 SG CYS 123 14.811 80.922 4.613 1.00 99.90 S ATOM 946 N LEU 124 12.953 77.559 2.198 1.00 99.90 N ATOM 947 CA LEU 124 12.000 76.567 1.793 1.00 99.90 C ATOM 948 C LEU 124 12.724 75.285 1.497 1.00 99.90 C ATOM 949 O LEU 124 12.290 74.213 1.913 1.00 99.90 O ATOM 950 CB LEU 124 11.211 76.980 0.539 1.00 99.90 C ATOM 951 CG LEU 124 10.176 75.932 0.088 1.00 99.90 C ATOM 952 CD1 LEU 124 9.090 75.710 1.157 1.00 99.90 C ATOM 953 CD2 LEU 124 9.591 76.286 -1.288 1.00 99.90 C ATOM 954 N SER 125 13.852 75.356 0.762 1.00 99.90 N ATOM 955 CA SER 125 14.563 74.152 0.426 1.00 99.90 C ATOM 956 C SER 125 15.194 73.563 1.656 1.00 99.90 C ATOM 957 O SER 125 15.106 72.359 1.894 1.00 99.90 O ATOM 958 CB SER 125 15.671 74.362 -0.626 1.00 99.90 C ATOM 959 OG SER 125 16.725 75.154 -0.101 1.00 99.90 O ATOM 960 N ARG 126 15.840 74.416 2.471 1.00 99.90 N ATOM 961 CA ARG 126 16.558 74.024 3.653 1.00 99.90 C ATOM 962 C ARG 126 15.614 73.471 4.676 1.00 99.90 C ATOM 963 O ARG 126 15.940 72.521 5.387 1.00 99.90 O ATOM 964 CB ARG 126 17.283 75.213 4.299 1.00 99.90 C ATOM 965 CG ARG 126 18.374 75.794 3.400 1.00 99.90 C ATOM 966 CD ARG 126 18.904 77.138 3.887 1.00 99.90 C ATOM 967 NE ARG 126 19.383 76.943 5.281 1.00 99.90 N ATOM 968 CZ ARG 126 20.334 77.773 5.796 1.00 99.90 C ATOM 969 NH1 ARG 126 20.862 78.771 5.029 1.00 99.90 H ATOM 970 NH2 ARG 126 20.759 77.604 7.080 1.00 99.90 H ATOM 971 N GLY 127 14.407 74.053 4.773 1.00 99.90 N ATOM 972 CA GLY 127 13.434 73.632 5.739 1.00 99.90 C ATOM 973 C GLY 127 13.427 74.569 6.916 1.00 99.90 C ATOM 974 O GLY 127 12.766 74.294 7.915 1.00 99.90 O ATOM 975 N ASP 128 14.153 75.706 6.848 1.00 99.90 N ATOM 976 CA ASP 128 14.170 76.590 7.985 1.00 99.90 C ATOM 977 C ASP 128 13.226 77.734 7.757 1.00 99.90 C ATOM 978 O ASP 128 13.555 78.886 8.040 1.00 99.90 O ATOM 979 CB ASP 128 15.558 77.198 8.239 1.00 99.90 C ATOM 980 CG ASP 128 16.485 76.079 8.685 1.00 99.90 C ATOM 981 OD1 ASP 128 15.972 75.057 9.215 1.00 99.90 O ATOM 982 OD2 ASP 128 17.720 76.226 8.497 1.00 99.90 O ATOM 983 N CYS 129 12.004 77.445 7.273 1.00 99.90 N ATOM 984 CA CYS 129 11.050 78.489 7.034 1.00 99.90 C ATOM 985 C CYS 129 10.402 78.847 8.336 1.00 99.90 C ATOM 986 O CYS 129 10.226 78.001 9.209 1.00 99.90 O ATOM 987 CB CYS 129 9.924 78.073 6.071 1.00 99.90 C ATOM 988 SG CYS 129 10.543 77.641 4.421 1.00 99.90 S ATOM 989 N CYS 130 10.022 80.127 8.490 1.00 99.90 N ATOM 990 CA CYS 130 9.350 80.585 9.672 1.00 99.90 C ATOM 991 C CYS 130 7.988 79.970 9.636 1.00 99.90 C ATOM 992 O CYS 130 7.497 79.599 8.570 1.00 99.90 O ATOM 993 CB CYS 130 9.090 82.100 9.678 1.00 99.90 C ATOM 994 SG CYS 130 10.580 83.133 9.517 1.00 99.90 S ATOM 995 N THR 131 7.326 79.875 10.807 1.00 99.90 N ATOM 996 CA THR 131 6.028 79.267 10.846 1.00 99.90 C ATOM 997 C THR 131 5.135 80.020 9.901 1.00 99.90 C ATOM 998 O THR 131 4.392 79.423 9.123 1.00 99.90 O ATOM 999 CB THR 131 5.406 79.311 12.213 1.00 99.90 C ATOM 1000 OG1 THR 131 5.221 80.653 12.633 1.00 99.90 O ATOM 1001 CG2 THR 131 6.329 78.571 13.196 1.00 99.90 C ATOM 1002 N ASN 132 5.212 81.361 9.946 1.00 99.90 N ATOM 1003 CA ASN 132 4.453 82.300 9.160 1.00 99.90 C ATOM 1004 C ASN 132 4.919 82.352 7.731 1.00 99.90 C ATOM 1005 O ASN 132 4.286 83.002 6.900 1.00 99.90 O ATOM 1006 CB ASN 132 4.509 83.742 9.698 1.00 99.90 C ATOM 1007 CG ASN 132 3.584 83.830 10.901 1.00 99.90 C ATOM 1008 OD1 ASN 132 2.770 82.940 11.137 1.00 99.90 O ATOM 1009 ND2 ASN 132 3.695 84.943 11.671 1.00 99.90 N ATOM 1010 N TYR 133 6.051 81.710 7.400 1.00 99.90 N ATOM 1011 CA TYR 133 6.671 81.898 6.114 1.00 99.90 C ATOM 1012 C TYR 133 5.710 81.678 4.977 1.00 99.90 C ATOM 1013 O TYR 133 5.583 82.527 4.098 1.00 99.90 O ATOM 1014 CB TYR 133 7.842 80.911 5.924 1.00 99.90 C ATOM 1015 CG TYR 133 8.487 81.102 4.592 1.00 99.90 C ATOM 1016 CD1 TYR 133 9.501 82.017 4.425 1.00 99.90 C ATOM 1017 CD2 TYR 133 8.088 80.354 3.506 1.00 99.90 C ATOM 1018 CE1 TYR 133 10.101 82.186 3.200 1.00 99.90 C ATOM 1019 CE2 TYR 133 8.684 80.518 2.276 1.00 99.90 C ATOM 1020 CZ TYR 133 9.693 81.437 2.121 1.00 99.90 C ATOM 1021 OH TYR 133 10.305 81.606 0.862 1.00 99.90 H ATOM 1022 N GLN 134 4.976 80.558 4.955 1.00 99.90 N ATOM 1023 CA GLN 134 4.122 80.315 3.828 1.00 99.90 C ATOM 1024 C GLN 134 3.013 81.316 3.792 1.00 99.90 C ATOM 1025 O GLN 134 2.654 81.824 2.731 1.00 99.90 O ATOM 1026 CB GLN 134 3.501 78.909 3.878 1.00 99.90 C ATOM 1027 CG GLN 134 2.667 78.555 2.650 1.00 99.90 C ATOM 1028 CD GLN 134 2.134 77.145 2.859 1.00 99.90 C ATOM 1029 OE1 GLN 134 2.359 76.259 2.035 1.00 99.90 O ATOM 1030 NE2 GLN 134 1.411 76.928 3.990 1.00 99.90 N ATOM 1031 N VAL 135 2.441 81.629 4.965 1.00 99.90 N ATOM 1032 CA VAL 135 1.296 82.485 4.986 1.00 99.90 C ATOM 1033 C VAL 135 1.619 83.832 4.426 1.00 99.90 C ATOM 1034 O VAL 135 1.046 84.233 3.416 1.00 99.90 O ATOM 1035 CB VAL 135 0.776 82.682 6.381 1.00 99.90 C ATOM 1036 CG1 VAL 135 -0.387 83.687 6.346 1.00 99.90 C ATOM 1037 CG2 VAL 135 0.388 81.307 6.953 1.00 99.90 C ATOM 1038 N VAL 136 2.555 84.566 5.055 1.00 99.90 N ATOM 1039 CA VAL 136 2.844 85.910 4.640 1.00 99.90 C ATOM 1040 C VAL 136 3.580 85.950 3.354 1.00 99.90 C ATOM 1041 O VAL 136 3.281 86.733 2.453 1.00 99.90 O ATOM 1042 CB VAL 136 3.650 86.665 5.653 1.00 99.90 C ATOM 1043 CG1 VAL 136 4.091 87.998 5.032 1.00 99.90 C ATOM 1044 CG2 VAL 136 2.790 86.844 6.913 1.00 99.90 C ATOM 1045 N CYS 137 4.616 85.114 3.282 1.00 99.90 N ATOM 1046 CA CYS 137 5.496 85.088 2.171 1.00 99.90 C ATOM 1047 C CYS 137 4.833 84.463 0.950 1.00 99.90 C ATOM 1048 O CYS 137 5.016 84.943 -0.170 1.00 99.90 O ATOM 1049 CB CYS 137 6.836 84.445 2.623 1.00 99.90 C ATOM 1050 SG CYS 137 7.791 85.384 3.917 1.00 99.90 S ATOM 1051 N LYS 138 4.005 83.400 1.102 1.00 99.90 N ATOM 1052 CA LYS 138 3.443 82.797 -0.086 1.00 99.90 C ATOM 1053 C LYS 138 1.984 83.067 -0.160 1.00 99.90 C ATOM 1054 O LYS 138 1.201 82.173 -0.481 1.00 99.90 O ATOM 1055 CB LYS 138 3.582 81.263 -0.112 1.00 99.90 C ATOM 1056 CG LYS 138 5.025 80.764 -0.209 1.00 99.90 C ATOM 1057 CD LYS 138 5.737 81.183 -1.496 1.00 99.90 C ATOM 1058 CE LYS 138 7.181 80.685 -1.581 1.00 99.90 C ATOM 1059 NZ LYS 138 7.203 79.230 -1.841 1.00 99.90 N ATOM 1060 N GLY 139 1.601 84.326 0.152 1.00 99.90 N ATOM 1061 CA GLY 139 0.239 84.617 0.505 1.00 99.90 C ATOM 1062 C GLY 139 -0.302 85.659 -0.426 1.00 99.90 C ATOM 1063 O GLY 139 -0.043 85.622 -1.625 1.00 99.90 O ATOM 1064 N GLU 140 -1.091 86.598 0.118 1.00 99.90 N ATOM 1065 CA GLU 140 -2.151 87.225 -0.628 1.00 99.90 C ATOM 1066 C GLU 140 -1.642 88.377 -1.453 1.00 99.90 C ATOM 1067 O GLU 140 -2.330 88.806 -2.376 1.00 99.90 O ATOM 1068 CB GLU 140 -3.229 87.806 0.310 1.00 99.90 C ATOM 1069 CG GLU 140 -4.679 87.622 -0.154 1.00 99.90 C ATOM 1070 CD GLU 140 -5.594 87.976 1.017 1.00 99.90 C ATOM 1071 OE1 GLU 140 -5.466 89.106 1.556 1.00 99.90 O ATOM 1072 OE2 GLU 140 -6.437 87.117 1.390 1.00 99.90 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 345 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 51.84 69.3 88 100.0 88 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 58.39 61.3 62 100.0 62 ARMSMC BURIED . . . . . . . . 31.09 88.5 26 100.0 26 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.58 59.0 39 100.0 39 ARMSSC1 RELIABLE SIDE CHAINS . 74.67 58.3 36 100.0 36 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 72.91 53.8 26 100.0 26 ARMSSC1 BURIED . . . . . . . . 77.82 69.2 13 100.0 13 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 69.39 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 72.61 50.0 18 100.0 18 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 82.38 37.5 16 100.0 16 ARMSSC2 BURIED . . . . . . . . 17.55 71.4 7 100.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.02 38.5 13 100.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 73.15 41.7 12 100.0 12 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 66.19 40.0 10 100.0 10 ARMSSC3 BURIED . . . . . . . . 95.60 33.3 3 100.0 3 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 90.45 33.3 6 100.0 6 ARMSSC4 RELIABLE SIDE CHAINS . 90.45 33.3 6 100.0 6 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 100.88 25.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 64.71 50.0 2 100.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.06 (Number of atoms: 45) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.06 45 100.0 45 CRMSCA CRN = ALL/NP . . . . . 0.0457 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.30 32 100.0 32 CRMSCA BURIED . . . . . . . . 1.27 13 100.0 13 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.24 221 100.0 221 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.52 156 100.0 156 CRMSMC BURIED . . . . . . . . 1.38 65 100.0 65 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 5.08 165 100.0 165 CRMSSC RELIABLE SIDE CHAINS . 5.30 145 100.0 145 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 5.29 112 100.0 112 CRMSSC BURIED . . . . . . . . 4.61 53 100.0 53 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.83 345 100.0 345 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 4.01 240 100.0 240 CRMSALL BURIED . . . . . . . . 3.38 105 100.0 105 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.327 0.969 0.970 45 100.0 45 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 98.095 0.965 0.966 32 100.0 32 ERRCA BURIED . . . . . . . . 98.896 0.980 0.981 13 100.0 13 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 98.196 0.967 0.968 221 100.0 221 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 97.924 0.962 0.963 156 100.0 156 ERRMC BURIED . . . . . . . . 98.850 0.979 0.980 65 100.0 65 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 96.349 0.934 0.937 165 100.0 165 ERRSC RELIABLE SIDE CHAINS . 96.189 0.931 0.935 145 100.0 145 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 96.002 0.927 0.931 112 100.0 112 ERRSC BURIED . . . . . . . . 97.082 0.947 0.951 53 100.0 53 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.358 0.952 0.954 345 100.0 345 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 97.082 0.947 0.949 240 100.0 240 ERRALL BURIED . . . . . . . . 97.987 0.964 0.965 105 100.0 105 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 17 36 39 44 45 45 45 DISTCA CA (P) 37.78 80.00 86.67 97.78 100.00 45 DISTCA CA (RMS) 0.69 1.10 1.23 1.85 2.06 DISTCA ALL (N) 98 214 266 307 329 345 345 DISTALL ALL (P) 28.41 62.03 77.10 88.99 95.36 345 DISTALL ALL (RMS) 0.73 1.18 1.51 2.02 2.63 DISTALL END of the results output