####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 40 ( 306), selected 40 , name T0543TS016_1-D1 # Molecule2: number of CA atoms 40 ( 303), selected 40 , name T0543-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0543TS016_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 56 - 95 2.44 2.44 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 71 - 95 1.68 2.61 LCS_AVERAGE: 50.75 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 72 - 82 0.80 2.93 LONGEST_CONTINUOUS_SEGMENT: 11 84 - 94 0.87 3.00 LCS_AVERAGE: 22.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 40 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 56 G 56 7 12 40 3 6 8 11 21 27 35 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 57 S 57 7 12 40 4 6 10 22 28 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 58 C 58 7 12 40 6 10 24 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 59 K 59 7 12 40 9 17 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 60 G 60 7 12 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 61 R 61 7 12 40 5 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 62 C 62 7 12 40 4 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 63 F 63 6 12 40 4 12 20 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 64 E 64 6 12 40 5 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 65 L 65 6 12 40 4 6 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Q 66 Q 66 6 12 40 4 9 25 30 31 34 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 67 E 67 5 12 40 3 4 11 18 25 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT V 68 V 68 5 11 40 3 4 5 5 6 17 30 35 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT G 69 G 69 5 10 40 1 3 6 10 14 18 33 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 70 P 70 4 22 40 1 4 6 6 7 13 16 21 36 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT P 71 P 71 4 25 40 3 4 11 18 29 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 72 D 72 11 25 40 3 8 24 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 73 C 73 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT R 74 R 74 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 75 C 75 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 76 D 76 11 25 40 7 17 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT N 77 N 77 11 25 40 4 9 24 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 78 L 78 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 79 C 79 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 80 K 80 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 81 S 81 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT Y 82 Y 82 11 25 40 7 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 83 S 83 10 25 40 3 6 11 18 29 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT S 84 S 84 11 25 40 3 7 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 85 C 85 11 25 40 5 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 86 C 86 11 25 40 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT H 87 H 87 11 25 40 4 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 88 D 88 11 25 40 8 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT F 89 F 89 11 25 40 6 16 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT D 90 D 90 11 25 40 6 14 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT E 91 E 91 11 25 40 8 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 92 L 92 11 25 40 6 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT C 93 C 93 11 25 40 4 10 21 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT L 94 L 94 11 25 40 4 8 18 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_GDT K 95 K 95 8 25 40 3 3 11 20 30 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 LCS_AVERAGE LCS_A: 57.67 ( 22.25 50.75 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 18 25 30 31 35 36 36 38 40 40 40 40 40 40 40 40 40 40 40 GDT PERCENT_AT 22.50 45.00 62.50 75.00 77.50 87.50 90.00 90.00 95.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.36 0.72 0.95 1.17 1.21 1.82 1.84 1.84 2.15 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 GDT RMS_ALL_AT 2.79 2.76 2.84 2.83 2.82 2.51 2.53 2.53 2.48 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 2.44 # Checking swapping # possible swapping detected: F 63 F 63 # possible swapping detected: E 64 E 64 # possible swapping detected: D 76 D 76 # possible swapping detected: Y 82 Y 82 # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 56 G 56 5.185 0 0.252 0.252 5.185 34.881 34.881 LGA S 57 S 57 3.267 0 0.018 0.558 4.268 52.262 52.698 LGA C 58 C 58 1.506 0 0.167 0.818 1.936 79.405 77.222 LGA K 59 K 59 1.209 0 0.089 0.124 7.235 88.333 58.995 LGA G 60 G 60 0.736 0 0.165 0.165 1.201 90.595 90.595 LGA R 61 R 61 0.811 0 0.071 0.868 4.799 88.214 71.342 LGA C 62 C 62 1.260 0 0.611 0.552 2.949 77.619 77.460 LGA F 63 F 63 1.958 0 0.213 0.269 3.960 70.833 57.706 LGA E 64 E 64 1.040 0 0.119 0.684 4.444 79.286 62.222 LGA L 65 L 65 1.735 0 0.239 1.434 6.642 67.262 51.012 LGA Q 66 Q 66 2.315 0 0.059 1.036 10.482 63.571 33.386 LGA E 67 E 67 3.930 0 0.073 1.215 9.569 57.738 29.048 LGA V 68 V 68 4.768 0 0.541 0.623 8.401 31.429 20.340 LGA G 69 G 69 5.995 0 0.610 0.610 5.995 22.619 22.619 LGA P 70 P 70 6.970 0 0.157 0.244 10.771 19.762 11.905 LGA P 71 P 71 3.867 0 0.676 0.575 4.849 42.262 38.435 LGA D 72 D 72 2.020 3 0.697 0.657 3.537 63.452 37.976 LGA C 73 C 73 0.999 0 0.136 0.141 1.800 81.548 80.079 LGA R 74 R 74 1.177 0 0.166 1.069 5.378 77.262 62.857 LGA C 75 C 75 0.739 0 0.282 0.268 1.338 88.214 87.460 LGA D 76 D 76 1.430 0 0.075 0.916 3.826 81.429 69.583 LGA N 77 N 77 2.015 0 0.091 0.526 3.507 68.810 62.202 LGA L 78 L 78 0.990 0 0.164 1.289 3.946 83.690 78.929 LGA C 79 C 79 1.027 0 0.029 0.097 1.411 81.429 81.429 LGA K 80 K 80 1.222 0 0.041 1.076 4.529 81.429 71.323 LGA S 81 S 81 1.018 0 0.033 0.714 2.854 81.429 78.889 LGA Y 82 Y 82 1.436 0 0.448 0.548 3.339 79.286 67.937 LGA S 83 S 83 3.484 0 0.547 0.666 7.305 69.762 51.746 LGA S 84 S 84 2.096 0 0.674 0.907 5.361 77.381 63.175 LGA C 85 C 85 0.679 0 0.157 0.313 2.097 88.214 83.175 LGA C 86 C 86 0.284 0 0.092 0.216 1.273 95.238 93.730 LGA H 87 H 87 1.381 0 0.058 1.269 7.954 83.690 50.238 LGA D 88 D 88 0.491 0 0.198 1.126 3.748 97.619 81.607 LGA F 89 F 89 1.180 0 0.087 0.183 1.996 83.690 77.576 LGA D 90 D 90 1.543 0 0.019 0.828 3.612 77.143 71.369 LGA E 91 E 91 0.508 0 0.148 0.800 3.075 88.214 81.217 LGA L 92 L 92 0.854 0 0.074 0.836 2.797 88.214 84.048 LGA C 93 C 93 1.604 0 0.290 0.280 3.726 65.595 68.016 LGA L 94 L 94 2.297 0 0.120 0.177 4.914 72.976 56.131 LGA K 95 K 95 3.036 0 0.053 0.652 7.161 47.381 32.063 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 40 160 160 100.00 303 303 100.00 40 SUMMARY(RMSD_GDC): 2.444 2.338 3.405 71.729 61.566 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 40 40 4.0 36 1.84 77.500 75.209 1.857 LGA_LOCAL RMSD: 1.838 Number of atoms: 36 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.529 Number of assigned atoms: 40 Std_ASGN_ATOMS RMSD: 2.444 Standard rmsd on all 40 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.930527 * X + -0.300902 * Y + 0.208751 * Z + -28.812572 Y_new = -0.144166 * X + -0.824959 * Y + -0.546497 * Z + 7.625068 Z_new = 0.336653 * X + 0.478435 * Y + -0.811027 * Z + 31.563957 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.153707 -0.343360 2.608623 [DEG: -8.8068 -19.6731 149.4631 ] ZXZ: 0.364876 2.516701 0.613174 [DEG: 20.9059 144.1964 35.1323 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0543TS016_1-D1 REMARK 2: T0543-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0543TS016_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 40 40 4.0 36 1.84 75.209 2.44 REMARK ---------------------------------------------------------- MOLECULE T0543TS016_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0543 REMARK MODEL 1 REMARK PARENT 2cqw_A ATOM 422 N GLY 56 35.699 76.976 15.940 1.00 99.90 N ATOM 423 CA GLY 56 35.464 77.453 17.232 1.00 99.90 C ATOM 424 C GLY 56 33.973 77.475 17.221 1.00 99.90 C ATOM 425 O GLY 56 33.333 77.531 18.263 1.00 99.90 O ATOM 426 N SER 57 33.383 77.528 16.003 1.00 99.90 N ATOM 427 CA SER 57 31.957 77.556 15.883 1.00 99.90 C ATOM 428 C SER 57 31.328 76.167 16.026 1.00 99.90 C ATOM 429 O SER 57 31.845 75.184 15.492 1.00 99.90 O ATOM 430 CB SER 57 31.439 78.155 14.566 1.00 99.90 C ATOM 431 OG SER 57 31.560 77.216 13.511 1.00 99.90 O ATOM 432 N CYS 58 30.184 76.036 16.773 1.00 99.90 N ATOM 433 CA CYS 58 29.453 74.769 16.826 1.00 99.90 C ATOM 434 C CYS 58 28.266 74.919 15.918 1.00 99.90 C ATOM 435 O CYS 58 27.195 74.364 16.155 1.00 99.90 O ATOM 436 CB CYS 58 28.826 74.257 18.200 1.00 99.90 C ATOM 437 SG CYS 58 28.043 72.548 18.158 1.00 99.90 S ATOM 438 N LYS 59 28.422 75.644 14.805 1.00 99.90 N ATOM 439 CA LYS 59 27.264 75.828 13.988 1.00 99.90 C ATOM 440 C LYS 59 27.315 74.862 12.862 1.00 99.90 C ATOM 441 O LYS 59 28.384 74.525 12.358 1.00 99.90 O ATOM 442 CB LYS 59 27.172 77.224 13.359 1.00 99.90 C ATOM 443 CG LYS 59 25.928 77.394 12.496 1.00 99.90 C ATOM 444 CD LYS 59 25.624 78.847 12.136 1.00 99.90 C ATOM 445 CE LYS 59 24.375 79.001 11.267 1.00 99.90 C ATOM 446 NZ LYS 59 24.144 80.429 10.961 1.00 99.90 N ATOM 447 N GLY 60 26.131 74.393 12.433 1.00 99.90 N ATOM 448 CA GLY 60 26.060 73.486 11.331 1.00 99.90 C ATOM 449 C GLY 60 25.798 72.114 11.854 1.00 99.90 C ATOM 450 O GLY 60 25.336 71.254 11.109 1.00 99.90 O ATOM 451 N ARG 61 26.074 71.854 13.145 1.00 99.90 N ATOM 452 CA ARG 61 25.830 70.524 13.628 1.00 99.90 C ATOM 453 C ARG 61 24.951 70.608 14.828 1.00 99.90 C ATOM 454 O ARG 61 24.705 69.609 15.507 1.00 99.90 O ATOM 455 CB ARG 61 27.120 69.822 14.088 1.00 99.90 C ATOM 456 CG ARG 61 28.099 69.536 12.948 1.00 99.90 C ATOM 457 CD ARG 61 29.325 68.711 13.353 1.00 99.90 C ATOM 458 NE ARG 61 30.195 69.563 14.209 1.00 99.90 N ATOM 459 CZ ARG 61 31.496 69.218 14.434 1.00 99.90 C ATOM 460 NH1 ARG 61 32.021 68.094 13.863 1.00 99.90 H ATOM 461 NH2 ARG 61 32.276 70.001 15.235 1.00 99.90 H ATOM 462 N CYS 62 24.371 71.793 15.054 1.00 99.90 N ATOM 463 CA CYS 62 23.581 72.014 16.226 1.00 99.90 C ATOM 464 C CYS 62 22.457 71.037 16.222 1.00 99.90 C ATOM 465 O CYS 62 22.017 70.597 17.283 1.00 99.90 O ATOM 466 CB CYS 62 22.984 73.431 16.271 1.00 99.90 C ATOM 467 SG CYS 62 24.273 74.704 16.417 1.00 99.90 S ATOM 468 N PHE 63 21.920 70.700 15.036 1.00 99.90 N ATOM 469 CA PHE 63 20.872 69.720 15.049 1.00 99.90 C ATOM 470 C PHE 63 21.399 68.430 14.499 1.00 99.90 C ATOM 471 O PHE 63 20.907 67.947 13.480 1.00 99.90 O ATOM 472 CB PHE 63 19.675 70.089 14.155 1.00 99.90 C ATOM 473 CG PHE 63 18.996 71.296 14.706 1.00 99.90 C ATOM 474 CD1 PHE 63 19.486 72.554 14.444 1.00 99.90 C ATOM 475 CD2 PHE 63 17.858 71.179 15.473 1.00 99.90 C ATOM 476 CE1 PHE 63 18.862 73.674 14.943 1.00 99.90 C ATOM 477 CE2 PHE 63 17.230 72.297 15.975 1.00 99.90 C ATOM 478 CZ PHE 63 17.730 73.549 15.712 1.00 99.90 C ATOM 479 N GLU 64 22.401 67.820 15.162 1.00 99.90 N ATOM 480 CA GLU 64 22.833 66.518 14.727 1.00 99.90 C ATOM 481 C GLU 64 22.705 65.663 15.937 1.00 99.90 C ATOM 482 O GLU 64 23.394 65.900 16.924 1.00 99.90 O ATOM 483 CB GLU 64 24.291 66.443 14.236 1.00 99.90 C ATOM 484 CG GLU 64 24.490 67.081 12.863 1.00 99.90 C ATOM 485 CD GLU 64 25.919 66.831 12.420 1.00 99.90 C ATOM 486 OE1 GLU 64 26.794 66.678 13.313 1.00 99.90 O ATOM 487 OE2 GLU 64 26.158 66.784 11.182 1.00 99.90 O ATOM 488 N LEU 65 21.879 64.600 15.865 1.00 99.90 N ATOM 489 CA LEU 65 21.488 63.939 17.081 1.00 99.90 C ATOM 490 C LEU 65 22.657 63.485 17.896 1.00 99.90 C ATOM 491 O LEU 65 22.913 64.091 18.930 1.00 99.90 O ATOM 492 CB LEU 65 20.566 62.744 16.843 1.00 99.90 C ATOM 493 CG LEU 65 20.159 62.068 18.160 1.00 99.90 C ATOM 494 CD1 LEU 65 19.438 63.053 19.096 1.00 99.90 C ATOM 495 CD2 LEU 65 19.332 60.803 17.889 1.00 99.90 C ATOM 496 N GLN 66 23.471 62.509 17.463 1.00 99.90 N ATOM 497 CA GLN 66 24.598 62.237 18.308 1.00 99.90 C ATOM 498 C GLN 66 25.640 61.562 17.494 1.00 99.90 C ATOM 499 O GLN 66 25.379 60.572 16.811 1.00 99.90 O ATOM 500 CB GLN 66 24.331 61.384 19.577 1.00 99.90 C ATOM 501 CG GLN 66 23.671 62.168 20.720 1.00 99.90 C ATOM 502 CD GLN 66 23.681 61.339 21.998 1.00 99.90 C ATOM 503 OE1 GLN 66 24.734 60.971 22.519 1.00 99.90 O ATOM 504 NE2 GLN 66 22.468 61.045 22.535 1.00 99.90 N ATOM 505 N GLU 67 26.861 62.115 17.549 1.00 99.90 N ATOM 506 CA GLU 67 27.961 61.551 16.832 1.00 99.90 C ATOM 507 C GLU 67 28.838 60.939 17.880 1.00 99.90 C ATOM 508 O GLU 67 29.392 61.638 18.726 1.00 99.90 O ATOM 509 CB GLU 67 28.752 62.599 16.031 1.00 99.90 C ATOM 510 CG GLU 67 27.976 63.215 14.862 1.00 99.90 C ATOM 511 CD GLU 67 28.021 62.256 13.678 1.00 99.90 C ATOM 512 OE1 GLU 67 29.108 61.669 13.433 1.00 99.90 O ATOM 513 OE2 GLU 67 26.972 62.099 12.996 1.00 99.90 O ATOM 514 N VAL 68 29.014 59.603 17.833 1.00 99.90 N ATOM 515 CA VAL 68 29.717 58.917 18.882 1.00 99.90 C ATOM 516 C VAL 68 31.097 59.469 19.007 1.00 99.90 C ATOM 517 O VAL 68 31.552 59.826 20.092 1.00 99.90 O ATOM 518 CB VAL 68 29.858 57.448 18.619 1.00 99.90 C ATOM 519 CG1 VAL 68 30.725 56.840 19.734 1.00 99.90 C ATOM 520 CG2 VAL 68 28.458 56.823 18.509 1.00 99.90 C ATOM 521 N GLY 69 31.777 59.606 17.865 1.00 99.90 N ATOM 522 CA GLY 69 33.139 60.044 17.810 1.00 99.90 C ATOM 523 C GLY 69 33.277 61.436 18.369 1.00 99.90 C ATOM 524 O GLY 69 34.391 61.852 18.662 1.00 99.90 O ATOM 525 N PRO 70 32.274 62.260 18.373 1.00 99.90 N ATOM 526 CA PRO 70 32.538 63.564 18.955 1.00 99.90 C ATOM 527 C PRO 70 32.496 63.813 20.441 1.00 99.90 C ATOM 528 O PRO 70 31.433 63.643 21.036 1.00 99.90 O ATOM 529 CB PRO 70 31.660 64.559 18.202 1.00 99.90 C ATOM 530 CG PRO 70 31.476 63.904 16.826 1.00 99.90 C ATOM 531 CD PRO 70 31.569 62.400 17.110 1.00 99.90 C ATOM 532 N PRO 71 33.577 64.259 21.038 1.00 99.90 N ATOM 533 CA PRO 71 33.539 64.685 22.410 1.00 99.90 C ATOM 534 C PRO 71 33.656 66.178 22.415 1.00 99.90 C ATOM 535 O PRO 71 33.762 66.789 21.355 1.00 99.90 O ATOM 536 CB PRO 71 34.741 64.049 23.108 1.00 99.90 C ATOM 537 CG PRO 71 35.754 63.887 21.974 1.00 99.90 C ATOM 538 CD PRO 71 34.866 63.650 20.744 1.00 99.90 C ATOM 539 N ASP 72 33.749 66.754 23.626 1.00 99.90 N ATOM 540 CA ASP 72 33.946 68.154 23.886 1.00 99.90 C ATOM 541 C ASP 72 32.668 68.920 23.883 1.00 99.90 C ATOM 542 O ASP 72 32.617 69.999 24.472 1.00 99.90 O ATOM 543 CB ASP 72 34.859 68.819 22.842 1.00 99.90 C ATOM 544 CG ASP 72 36.274 68.300 23.036 1.00 99.90 C ATOM 545 OD1 ASP 72 36.738 67.505 22.175 1.00 99.90 O ATOM 546 OD2 ASP 72 36.915 68.699 24.042 1.00 99.90 O ATOM 547 N CYS 73 31.587 68.392 23.289 1.00 99.90 N ATOM 548 CA CYS 73 30.355 69.101 23.463 1.00 99.90 C ATOM 549 C CYS 73 29.271 68.373 22.757 1.00 99.90 C ATOM 550 O CYS 73 29.493 67.715 21.741 1.00 99.90 O ATOM 551 CB CYS 73 30.351 70.586 23.043 1.00 99.90 C ATOM 552 SG CYS 73 30.503 70.902 21.258 1.00 99.90 S ATOM 553 N ARG 74 28.056 68.446 23.330 1.00 99.90 N ATOM 554 CA ARG 74 26.936 67.835 22.694 1.00 99.90 C ATOM 555 C ARG 74 25.977 68.913 22.356 1.00 99.90 C ATOM 556 O ARG 74 25.416 69.554 23.239 1.00 99.90 O ATOM 557 CB ARG 74 26.216 66.781 23.541 1.00 99.90 C ATOM 558 CG ARG 74 27.025 65.495 23.656 1.00 99.90 C ATOM 559 CD ARG 74 26.192 64.272 24.026 1.00 99.90 C ATOM 560 NE ARG 74 27.130 63.117 24.093 1.00 99.90 N ATOM 561 CZ ARG 74 27.445 62.415 22.966 1.00 99.90 C ATOM 562 NH1 ARG 74 28.317 61.367 23.039 1.00 99.90 H ATOM 563 NH2 ARG 74 26.895 62.759 21.766 1.00 99.90 H ATOM 564 N CYS 75 25.767 69.145 21.049 1.00 99.90 N ATOM 565 CA CYS 75 24.858 70.162 20.631 1.00 99.90 C ATOM 566 C CYS 75 23.523 69.460 20.471 1.00 99.90 C ATOM 567 O CYS 75 23.031 69.201 19.373 1.00 99.90 O ATOM 568 CB CYS 75 25.428 70.950 19.372 1.00 99.90 C ATOM 569 SG CYS 75 26.707 72.272 19.745 1.00 99.90 S ATOM 570 N ASP 76 22.910 69.107 21.632 1.00 99.90 N ATOM 571 CA ASP 76 21.654 68.396 21.707 1.00 99.90 C ATOM 572 C ASP 76 20.833 69.056 22.784 1.00 99.90 C ATOM 573 O ASP 76 21.362 69.742 23.656 1.00 99.90 O ATOM 574 CB ASP 76 21.838 66.915 22.092 1.00 99.90 C ATOM 575 CG ASP 76 20.589 66.126 21.727 1.00 99.90 C ATOM 576 OD1 ASP 76 19.619 66.737 21.206 1.00 99.90 O ATOM 577 OD2 ASP 76 20.593 64.889 21.962 1.00 99.90 O ATOM 578 N ASN 77 19.501 68.849 22.752 1.00 99.90 N ATOM 579 CA ASN 77 18.593 69.455 23.691 1.00 99.90 C ATOM 580 C ASN 77 18.931 68.993 25.071 1.00 99.90 C ATOM 581 O ASN 77 18.876 69.756 26.033 1.00 99.90 O ATOM 582 CB ASN 77 17.125 69.074 23.430 1.00 99.90 C ATOM 583 CG ASN 77 16.702 69.690 22.104 1.00 99.90 C ATOM 584 OD1 ASN 77 17.030 70.835 21.799 1.00 99.90 O ATOM 585 ND2 ASN 77 15.954 68.904 21.284 1.00 99.90 N ATOM 586 N LEU 78 19.322 67.717 25.182 1.00 99.90 N ATOM 587 CA LEU 78 19.661 67.054 26.404 1.00 99.90 C ATOM 588 C LEU 78 20.852 67.736 27.003 1.00 99.90 C ATOM 589 O LEU 78 21.062 67.650 28.210 1.00 99.90 O ATOM 590 CB LEU 78 20.034 65.576 26.180 1.00 99.90 C ATOM 591 CG LEU 78 18.857 64.712 25.685 1.00 99.90 C ATOM 592 CD1 LEU 78 19.287 63.249 25.479 1.00 99.90 C ATOM 593 CD2 LEU 78 17.643 64.844 26.619 1.00 99.90 C ATOM 594 N CYS 79 21.661 68.443 26.185 1.00 99.90 N ATOM 595 CA CYS 79 22.910 68.973 26.669 1.00 99.90 C ATOM 596 C CYS 79 22.687 69.826 27.881 1.00 99.90 C ATOM 597 O CYS 79 23.497 69.784 28.804 1.00 99.90 O ATOM 598 CB CYS 79 23.725 69.780 25.630 1.00 99.90 C ATOM 599 SG CYS 79 23.128 71.472 25.311 1.00 99.90 S ATOM 600 N LYS 80 21.608 70.625 27.938 1.00 99.90 N ATOM 601 CA LYS 80 21.374 71.436 29.105 1.00 99.90 C ATOM 602 C LYS 80 21.074 70.559 30.278 1.00 99.90 C ATOM 603 O LYS 80 21.466 70.847 31.409 1.00 99.90 O ATOM 604 CB LYS 80 20.182 72.393 28.943 1.00 99.90 C ATOM 605 CG LYS 80 20.409 73.486 27.894 1.00 99.90 C ATOM 606 CD LYS 80 19.134 74.245 27.518 1.00 99.90 C ATOM 607 CE LYS 80 19.362 75.335 26.468 1.00 99.90 C ATOM 608 NZ LYS 80 18.089 76.020 26.156 1.00 99.90 N ATOM 609 N SER 81 20.368 69.444 30.031 1.00 99.90 N ATOM 610 CA SER 81 19.927 68.611 31.108 1.00 99.90 C ATOM 611 C SER 81 21.098 68.140 31.902 1.00 99.90 C ATOM 612 O SER 81 21.043 68.097 33.131 1.00 99.90 O ATOM 613 CB SER 81 19.173 67.363 30.616 1.00 99.90 C ATOM 614 OG SER 81 18.761 66.576 31.723 1.00 99.90 O ATOM 615 N TYR 82 22.214 67.815 31.229 1.00 99.90 N ATOM 616 CA TYR 82 23.297 67.222 31.952 1.00 99.90 C ATOM 617 C TYR 82 24.529 68.025 31.682 1.00 99.90 C ATOM 618 O TYR 82 24.818 69.040 32.314 1.00 99.90 O ATOM 619 CB TYR 82 23.763 65.854 31.406 1.00 99.90 C ATOM 620 CG TYR 82 22.677 64.855 31.181 1.00 99.90 C ATOM 621 CD1 TYR 82 22.011 64.244 32.218 1.00 99.90 C ATOM 622 CD2 TYR 82 22.368 64.489 29.888 1.00 99.90 C ATOM 623 CE1 TYR 82 21.028 63.317 31.960 1.00 99.90 C ATOM 624 CE2 TYR 82 21.388 63.563 29.622 1.00 99.90 C ATOM 625 CZ TYR 82 20.714 62.978 30.664 1.00 99.90 C ATOM 626 OH TYR 82 19.706 62.026 30.403 1.00 99.90 H ATOM 627 N SER 83 25.294 67.484 30.717 1.00 99.90 N ATOM 628 CA SER 83 26.621 67.829 30.283 1.00 99.90 C ATOM 629 C SER 83 26.801 69.244 29.840 1.00 99.90 C ATOM 630 O SER 83 27.618 69.959 30.412 1.00 99.90 O ATOM 631 CB SER 83 27.089 66.912 29.142 1.00 99.90 C ATOM 632 OG SER 83 26.208 67.027 28.032 1.00 99.90 O ATOM 633 N SER 84 26.096 69.646 28.773 1.00 99.90 N ATOM 634 CA SER 84 26.085 70.965 28.192 1.00 99.90 C ATOM 635 C SER 84 26.489 70.836 26.763 1.00 99.90 C ATOM 636 O SER 84 26.997 69.811 26.314 1.00 99.90 O ATOM 637 CB SER 84 26.965 72.059 28.836 1.00 99.90 C ATOM 638 OG SER 84 26.496 72.352 30.146 1.00 99.90 O ATOM 639 N CYS 85 26.270 71.917 26.007 1.00 99.90 N ATOM 640 CA CYS 85 26.580 71.905 24.613 1.00 99.90 C ATOM 641 C CYS 85 27.924 72.551 24.471 1.00 99.90 C ATOM 642 O CYS 85 28.707 72.611 25.414 1.00 99.90 O ATOM 643 CB CYS 85 25.565 72.721 23.788 1.00 99.90 C ATOM 644 SG CYS 85 23.924 71.966 23.500 1.00 99.90 S ATOM 645 N CYS 86 28.288 72.960 23.250 1.00 99.90 N ATOM 646 CA CYS 86 29.462 73.771 23.137 1.00 99.90 C ATOM 647 C CYS 86 28.936 75.103 23.549 1.00 99.90 C ATOM 648 O CYS 86 27.765 75.378 23.322 1.00 99.90 O ATOM 649 CB CYS 86 30.004 73.939 21.702 1.00 99.90 C ATOM 650 SG CYS 86 31.295 72.779 21.140 1.00 99.90 S ATOM 651 N HIS 87 29.767 75.991 24.112 1.00 99.90 N ATOM 652 CA HIS 87 29.279 77.244 24.615 1.00 99.90 C ATOM 653 C HIS 87 28.590 77.974 23.510 1.00 99.90 C ATOM 654 O HIS 87 27.660 78.749 23.723 1.00 99.90 O ATOM 655 CB HIS 87 30.405 78.143 25.140 1.00 99.90 C ATOM 656 CG HIS 87 31.127 77.513 26.292 1.00 99.90 C ATOM 657 ND1 HIS 87 30.635 77.471 27.578 1.00 99.90 N ATOM 658 CD2 HIS 87 32.328 76.878 26.332 1.00 99.90 C ATOM 659 CE1 HIS 87 31.557 76.813 28.326 1.00 99.90 C ATOM 660 NE2 HIS 87 32.602 76.434 27.614 1.00 99.90 N ATOM 661 N ASP 88 29.073 77.769 22.287 1.00 99.90 N ATOM 662 CA ASP 88 28.549 78.366 21.102 1.00 99.90 C ATOM 663 C ASP 88 27.238 77.770 20.685 1.00 99.90 C ATOM 664 O ASP 88 26.513 78.389 19.913 1.00 99.90 O ATOM 665 CB ASP 88 29.537 78.234 19.934 1.00 99.90 C ATOM 666 CG ASP 88 30.750 79.092 20.262 1.00 99.90 C ATOM 667 OD1 ASP 88 30.731 79.770 21.324 1.00 99.90 O ATOM 668 OD2 ASP 88 31.713 79.084 19.451 1.00 99.90 O ATOM 669 N PHE 89 26.894 76.558 21.154 1.00 99.90 N ATOM 670 CA PHE 89 25.702 75.885 20.695 1.00 99.90 C ATOM 671 C PHE 89 24.507 76.780 20.825 1.00 99.90 C ATOM 672 O PHE 89 23.719 76.894 19.887 1.00 99.90 O ATOM 673 CB PHE 89 25.390 74.625 21.516 1.00 99.90 C ATOM 674 CG PHE 89 24.042 74.122 21.117 1.00 99.90 C ATOM 675 CD1 PHE 89 23.866 73.375 19.977 1.00 99.90 C ATOM 676 CD2 PHE 89 22.940 74.391 21.895 1.00 99.90 C ATOM 677 CE1 PHE 89 22.631 72.902 19.611 1.00 99.90 C ATOM 678 CE2 PHE 89 21.698 73.922 21.538 1.00 99.90 C ATOM 679 CZ PHE 89 21.539 73.174 20.397 1.00 99.90 C ATOM 680 N ASP 90 24.327 77.434 21.985 1.00 99.90 N ATOM 681 CA ASP 90 23.176 78.276 22.164 1.00 99.90 C ATOM 682 C ASP 90 23.257 79.487 21.281 1.00 99.90 C ATOM 683 O ASP 90 22.251 79.924 20.719 1.00 99.90 O ATOM 684 CB ASP 90 23.024 78.780 23.608 1.00 99.90 C ATOM 685 CG ASP 90 22.644 77.592 24.482 1.00 99.90 C ATOM 686 OD1 ASP 90 22.052 76.621 23.943 1.00 99.90 O ATOM 687 OD2 ASP 90 22.946 77.643 25.704 1.00 99.90 O ATOM 688 N GLU 91 24.457 80.084 21.165 1.00 99.90 N ATOM 689 CA GLU 91 24.650 81.288 20.408 1.00 99.90 C ATOM 690 C GLU 91 24.497 81.061 18.932 1.00 99.90 C ATOM 691 O GLU 91 23.927 81.891 18.229 1.00 99.90 O ATOM 692 CB GLU 91 26.033 81.920 20.632 1.00 99.90 C ATOM 693 CG GLU 91 26.214 82.460 22.049 1.00 99.90 C ATOM 694 CD GLU 91 27.521 83.237 22.093 1.00 99.90 C ATOM 695 OE1 GLU 91 28.266 83.197 21.079 1.00 99.90 O ATOM 696 OE2 GLU 91 27.786 83.884 23.143 1.00 99.90 O ATOM 697 N LEU 92 25.020 79.936 18.423 1.00 99.90 N ATOM 698 CA LEU 92 25.010 79.595 17.027 1.00 99.90 C ATOM 699 C LEU 92 23.620 79.345 16.585 1.00 99.90 C ATOM 700 O LEU 92 23.338 79.375 15.387 1.00 99.90 O ATOM 701 CB LEU 92 25.843 78.352 16.675 1.00 99.90 C ATOM 702 CG LEU 92 27.346 78.642 16.527 1.00 99.90 C ATOM 703 CD1 LEU 92 27.632 79.444 15.248 1.00 99.90 C ATOM 704 CD2 LEU 92 27.906 79.357 17.759 1.00 99.90 C ATOM 705 N CYS 93 22.737 79.002 17.534 1.00 99.90 N ATOM 706 CA CYS 93 21.385 78.709 17.182 1.00 99.90 C ATOM 707 C CYS 93 20.503 79.887 17.456 1.00 99.90 C ATOM 708 O CYS 93 20.308 80.754 16.608 1.00 99.90 O ATOM 709 CB CYS 93 20.794 77.544 17.997 1.00 99.90 C ATOM 710 SG CYS 93 21.612 75.958 17.668 1.00 99.90 S ATOM 711 N LEU 94 19.918 79.948 18.667 1.00 99.90 N ATOM 712 CA LEU 94 18.918 80.955 18.894 1.00 99.90 C ATOM 713 C LEU 94 19.532 82.170 19.481 1.00 99.90 C ATOM 714 O LEU 94 19.178 82.577 20.586 1.00 99.90 O ATOM 715 CB LEU 94 17.879 80.523 19.933 1.00 99.90 C ATOM 716 CG LEU 94 17.078 79.273 19.551 1.00 99.90 C ATOM 717 CD1 LEU 94 16.066 78.915 20.645 1.00 99.90 C ATOM 718 CD2 LEU 94 16.431 79.426 18.170 1.00 99.90 C ATOM 719 N LYS 95 20.415 82.842 18.736 1.00 99.90 N ATOM 720 CA LYS 95 20.984 83.976 19.377 1.00 99.90 C ATOM 721 C LYS 95 20.337 85.206 18.820 1.00 99.90 C ATOM 722 O LYS 95 19.996 85.271 17.640 1.00 99.90 O ATOM 723 CB LYS 95 22.506 84.099 19.179 1.00 99.90 C ATOM 724 CG LYS 95 23.174 85.024 20.199 1.00 99.90 C ATOM 725 CD LYS 95 23.155 84.457 21.621 1.00 99.90 C ATOM 726 CE LYS 95 23.788 85.365 22.675 1.00 99.90 C ATOM 727 NZ LYS 95 23.632 84.761 24.017 1.00 99.90 N TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 303 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 63.97 56.4 78 100.0 78 ARMSMC SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSMC SURFACE . . . . . . . . 70.25 55.4 56 100.0 56 ARMSMC BURIED . . . . . . . . 44.11 59.1 22 100.0 22 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 74.10 58.3 36 100.0 36 ARMSSC1 RELIABLE SIDE CHAINS . 75.11 57.1 35 100.0 35 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC1 SURFACE . . . . . . . . 72.05 60.0 25 100.0 25 ARMSSC1 BURIED . . . . . . . . 78.55 54.5 11 100.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 77.57 47.8 23 100.0 23 ARMSSC2 RELIABLE SIDE CHAINS . 71.20 52.9 17 100.0 17 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC2 SURFACE . . . . . . . . 84.89 44.4 18 100.0 18 ARMSSC2 BURIED . . . . . . . . 41.69 60.0 5 100.0 5 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 70.65 55.6 9 100.0 9 ARMSSC3 RELIABLE SIDE CHAINS . 74.92 50.0 8 100.0 8 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 62.58 57.1 7 100.0 7 ARMSSC3 BURIED . . . . . . . . 93.57 50.0 2 100.0 2 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 48.95 60.0 5 100.0 5 ARMSSC4 RELIABLE SIDE CHAINS . 48.95 60.0 5 100.0 5 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 24.20 75.0 4 100.0 4 ARMSSC4 BURIED . . . . . . . . 98.16 0.0 1 100.0 1 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.44 (Number of atoms: 40) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.44 40 100.0 40 CRMSCA CRN = ALL/NP . . . . . 0.0611 CRMSCA SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSCA SURFACE . . . . . . . . 2.62 29 100.0 29 CRMSCA BURIED . . . . . . . . 1.91 11 100.0 11 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.53 197 100.0 197 CRMSMC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSMC SURFACE . . . . . . . . 2.67 142 100.0 142 CRMSMC BURIED . . . . . . . . 2.13 55 100.0 55 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 4.32 143 100.0 143 CRMSSC RELIABLE SIDE CHAINS . 3.89 125 100.0 125 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSSC SURFACE . . . . . . . . 4.65 103 100.0 103 CRMSSC BURIED . . . . . . . . 3.28 40 100.0 40 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 3.42 303 100.0 303 CRMSALL SECONDARY STRUCTURE . . 0.00 0 0.0 0 CRMSALL SURFACE . . . . . . . . 3.66 219 100.0 219 CRMSALL BURIED . . . . . . . . 2.67 84 100.0 84 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.794 0.959 0.960 40 100.0 40 ERRCA SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRCA SURFACE . . . . . . . . 97.601 0.955 0.957 29 100.0 29 ERRCA BURIED . . . . . . . . 98.302 0.969 0.969 11 100.0 11 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.764 0.958 0.960 197 100.0 197 ERRMC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRMC SURFACE . . . . . . . . 97.606 0.955 0.957 142 100.0 142 ERRMC BURIED . . . . . . . . 98.171 0.966 0.967 55 100.0 55 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 96.287 0.931 0.934 143 100.0 143 ERRSC RELIABLE SIDE CHAINS . 96.605 0.937 0.939 125 100.0 125 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRSC SURFACE . . . . . . . . 95.935 0.925 0.928 103 100.0 103 ERRSC BURIED . . . . . . . . 97.194 0.948 0.950 40 100.0 40 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 97.126 0.947 0.949 303 100.0 303 ERRALL SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 0 ERRALL SURFACE . . . . . . . . 96.889 0.942 0.945 219 100.0 219 ERRALL BURIED . . . . . . . . 97.744 0.958 0.959 84 100.0 84 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 5 24 33 38 40 40 40 DISTCA CA (P) 12.50 60.00 82.50 95.00 100.00 40 DISTCA CA (RMS) 0.69 1.36 1.78 2.17 2.44 DISTCA ALL (N) 29 149 202 266 301 303 303 DISTALL ALL (P) 9.57 49.17 66.67 87.79 99.34 303 DISTALL ALL (RMS) 0.69 1.42 1.76 2.45 3.31 DISTALL END of the results output