####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 101 ( 404), selected 101 , name T0541TS328_1-D1 # Molecule2: number of CA atoms 102 ( 1498), selected 101 , name T0541-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0541TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 101 1 - 105 2.11 2.11 LCS_AVERAGE: 99.02 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 86 14 - 103 2.00 2.12 LONGEST_CONTINUOUS_SEGMENT: 86 16 - 105 2.00 2.12 LCS_AVERAGE: 81.16 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 23 - 43 0.98 2.28 LCS_AVERAGE: 13.07 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 101 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 5 52 101 4 23 48 64 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT I 2 I 2 5 52 101 6 26 48 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT P 3 P 3 5 52 101 6 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT D 4 D 4 5 52 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 5 L 5 5 52 101 4 10 39 64 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 6 V 6 5 52 101 8 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT P 7 P 7 4 52 101 4 15 23 43 69 87 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 8 V 8 4 52 101 4 6 8 26 35 53 71 86 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 9 S 9 4 73 101 3 3 21 48 71 84 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 10 L 10 4 76 101 6 30 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 11 T 11 4 76 101 3 30 52 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT P 12 P 12 4 76 101 9 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 13 V 13 3 76 101 1 3 30 47 68 85 95 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 14 T 14 4 86 101 7 27 50 65 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 15 V 15 8 86 101 3 6 16 41 67 87 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 16 V 16 12 86 101 3 15 39 60 77 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT P 17 P 17 12 86 101 3 12 34 60 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 19 T 19 12 86 101 3 8 30 56 72 88 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 20 V 20 12 86 101 4 15 27 43 68 85 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 21 N 21 12 86 101 7 16 33 60 77 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 22 T 22 12 86 101 4 17 29 55 72 88 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT M 23 M 23 21 86 101 8 27 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 24 T 24 21 86 101 8 30 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT A 25 A 25 21 86 101 8 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 26 T 26 21 86 101 7 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT I 27 I 27 21 86 101 7 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT E 28 E 28 21 86 101 7 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 29 N 29 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT Q 30 Q 30 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT G 31 G 31 21 86 101 11 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 32 N 32 21 86 101 10 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT K 33 K 33 21 86 101 10 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT D 34 D 34 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 35 S 35 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 36 T 36 21 86 101 3 30 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 37 S 37 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT F 38 F 38 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 39 N 39 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 40 V 40 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 41 S 41 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 42 L 42 21 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 43 L 43 21 86 101 11 31 50 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 44 V 44 20 86 101 11 31 50 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT D 45 D 45 19 86 101 6 26 44 60 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT G 46 G 46 19 86 101 11 31 49 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT I 47 I 47 19 86 101 11 31 50 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 48 V 48 19 86 101 10 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 49 V 49 19 86 101 12 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT D 50 D 50 19 86 101 12 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 51 T 51 19 86 101 11 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT Q 52 Q 52 19 86 101 11 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 53 T 53 19 86 101 5 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 54 V 54 19 86 101 6 25 50 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 55 T 55 19 86 101 3 4 24 47 60 80 95 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 56 S 56 4 86 101 3 5 6 42 63 87 96 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 57 L 57 8 86 101 3 31 44 64 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT E 58 E 58 13 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 59 S 59 13 86 101 5 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT E 60 E 60 13 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 61 N 61 13 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 62 S 62 13 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 63 T 63 13 86 101 8 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 64 N 64 13 86 101 10 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 65 V 65 13 86 101 7 27 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT D 66 D 66 13 86 101 7 25 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT F 67 F 67 13 86 101 5 20 38 63 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT H 68 H 68 13 86 101 7 17 31 50 70 88 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT W 69 W 69 13 86 101 7 20 38 63 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 70 T 70 13 86 101 7 18 38 60 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 71 L 71 13 86 101 4 16 31 60 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT A 75 A 75 13 86 101 3 12 44 59 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 76 N 76 13 86 101 4 16 29 53 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 77 S 77 13 86 101 6 16 35 57 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT Y 78 Y 78 13 86 101 6 21 44 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 79 T 79 13 86 101 7 31 49 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 80 L 80 13 86 101 10 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 81 T 81 13 86 101 11 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 82 V 82 13 86 101 11 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 83 N 83 13 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 84 V 84 13 86 101 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT D 85 D 85 13 86 101 4 23 48 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT P 86 P 86 13 86 101 8 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT E 87 E 87 13 86 101 12 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 88 N 88 13 86 101 9 31 52 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT A 89 A 89 13 86 101 5 27 49 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 90 V 90 13 86 101 5 27 49 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 91 N 91 13 86 101 5 23 48 64 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT E 92 E 92 12 86 101 3 12 45 63 77 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT G 93 G 93 12 86 101 3 19 47 63 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 94 N 94 12 86 101 11 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT E 95 E 95 6 86 101 3 6 46 64 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT S 96 S 96 6 86 101 10 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 97 N 97 8 86 101 10 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT N 98 N 98 8 86 101 10 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 99 T 99 8 86 101 10 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 100 L 100 8 86 101 10 31 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT T 101 T 101 8 86 101 9 31 50 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT A 102 A 102 8 86 101 11 31 49 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT L 103 L 103 8 86 101 7 31 46 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT V 104 V 104 8 86 101 6 16 34 52 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_GDT G 105 G 105 8 86 101 6 16 32 51 75 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 LCS_AVERAGE LCS_A: 64.41 ( 13.07 81.16 99.02 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 32 53 66 78 90 97 100 100 101 101 101 101 101 101 101 101 101 101 101 GDT PERCENT_AT 11.76 31.37 51.96 64.71 76.47 88.24 95.10 98.04 98.04 99.02 99.02 99.02 99.02 99.02 99.02 99.02 99.02 99.02 99.02 99.02 GDT RMS_LOCAL 0.31 0.73 1.06 1.27 1.50 1.78 1.97 2.06 2.06 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 GDT RMS_ALL_AT 2.38 2.36 2.21 2.23 2.22 2.13 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 2.11 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 2.274 4 0.141 0.141 2.851 62.857 31.429 LGA I 2 I 2 2.058 4 0.019 0.019 2.058 68.810 34.405 LGA P 3 P 3 1.571 3 0.178 0.178 2.528 68.929 39.388 LGA D 4 D 4 0.965 4 0.070 0.070 1.987 83.810 41.905 LGA L 5 L 5 2.266 4 0.199 0.199 2.266 75.119 37.560 LGA V 6 V 6 0.444 3 0.031 0.031 1.273 88.333 50.476 LGA P 7 P 7 3.352 3 0.568 0.568 5.672 43.333 24.762 LGA V 8 V 8 5.308 3 0.562 0.562 5.308 35.952 20.544 LGA S 9 S 9 3.523 2 0.683 0.683 3.959 62.500 41.667 LGA L 10 L 10 1.263 4 0.261 0.261 2.423 70.952 35.476 LGA T 11 T 11 1.584 3 0.041 0.041 1.619 75.000 42.857 LGA P 12 P 12 0.785 3 0.116 0.116 2.456 77.619 44.354 LGA V 13 V 13 3.935 3 0.651 0.651 3.935 55.595 31.769 LGA T 14 T 14 1.475 3 0.667 0.667 5.382 59.762 34.150 LGA V 15 V 15 3.694 3 0.059 0.059 3.694 59.524 34.014 LGA V 16 V 16 2.827 3 0.105 0.105 4.451 46.905 26.803 LGA P 17 P 17 2.494 3 0.447 0.447 2.508 62.857 35.918 LGA T 19 T 19 3.444 3 0.087 0.087 3.444 53.690 30.680 LGA V 20 V 20 3.930 3 0.045 0.045 5.024 37.500 21.429 LGA N 21 N 21 2.915 4 0.118 0.118 3.080 55.357 27.679 LGA T 22 T 22 3.234 3 0.197 0.197 3.649 50.119 28.639 LGA M 23 M 23 1.183 4 0.033 0.033 1.724 81.548 40.774 LGA T 24 T 24 0.653 3 0.136 0.136 1.437 88.214 50.408 LGA A 25 A 25 0.874 1 0.048 0.048 0.874 92.857 74.286 LGA T 26 T 26 0.984 3 0.065 0.065 1.596 83.810 47.891 LGA I 27 I 27 1.281 4 0.038 0.038 1.302 81.429 40.714 LGA E 28 E 28 1.650 5 0.119 0.119 2.294 70.833 31.481 LGA N 29 N 29 1.149 4 0.130 0.130 1.149 81.429 40.714 LGA Q 30 Q 30 1.583 5 0.247 0.247 3.025 67.262 29.894 LGA G 31 G 31 1.866 0 0.090 0.090 1.866 72.857 72.857 LGA N 32 N 32 1.846 4 0.345 0.345 3.046 65.119 32.560 LGA K 33 K 33 1.637 5 0.091 0.091 1.688 77.143 34.286 LGA D 34 D 34 1.114 4 0.172 0.172 1.217 81.429 40.714 LGA S 35 S 35 1.233 2 0.167 0.167 1.271 81.429 54.286 LGA T 36 T 36 1.492 3 0.540 0.540 3.281 71.429 40.816 LGA S 37 S 37 1.609 2 0.030 0.030 1.667 75.000 50.000 LGA F 38 F 38 1.405 7 0.048 0.048 1.460 81.429 29.610 LGA N 39 N 39 1.407 4 0.116 0.116 1.622 79.286 39.643 LGA V 40 V 40 0.738 3 0.116 0.116 1.551 86.071 49.184 LGA S 41 S 41 0.561 2 0.033 0.033 0.561 95.238 63.492 LGA L 42 L 42 0.405 4 0.134 0.134 1.048 92.976 46.488 LGA L 43 L 43 1.544 4 0.190 0.190 2.467 72.976 36.488 LGA V 44 V 44 1.869 3 0.093 0.093 2.229 68.810 39.320 LGA D 45 D 45 2.777 4 0.130 0.130 3.363 57.262 28.631 LGA G 46 G 46 1.939 0 0.150 0.150 2.030 70.833 70.833 LGA I 47 I 47 1.487 4 0.078 0.078 1.627 77.143 38.571 LGA V 48 V 48 0.577 3 0.132 0.132 0.848 92.857 53.061 LGA V 49 V 49 0.934 3 0.101 0.101 1.043 88.214 50.408 LGA D 50 D 50 0.963 4 0.020 0.020 0.979 90.476 45.238 LGA T 51 T 51 0.951 3 0.098 0.098 0.951 90.476 51.701 LGA Q 52 Q 52 1.700 5 0.189 0.189 2.799 68.929 30.635 LGA T 53 T 53 1.664 3 0.202 0.202 3.151 65.119 37.211 LGA V 54 V 54 2.647 3 0.100 0.100 2.647 62.857 35.918 LGA T 55 T 55 4.107 3 0.594 0.594 4.107 45.119 25.782 LGA S 56 S 56 3.679 2 0.616 0.616 3.679 50.119 33.413 LGA L 57 L 57 2.206 4 0.122 0.122 2.356 73.095 36.548 LGA E 58 E 58 1.920 5 0.580 0.580 5.100 59.405 26.402 LGA S 59 S 59 2.062 2 0.176 0.176 2.062 72.976 48.651 LGA E 60 E 60 1.920 5 0.173 0.173 2.408 68.810 30.582 LGA N 61 N 61 1.706 4 0.021 0.021 1.706 79.405 39.702 LGA S 62 S 62 1.043 2 0.044 0.044 1.327 85.952 57.302 LGA T 63 T 63 0.610 3 0.010 0.010 0.721 92.857 53.061 LGA N 64 N 64 0.340 4 0.023 0.023 1.082 92.976 46.488 LGA V 65 V 65 1.106 3 0.144 0.144 1.226 83.690 47.823 LGA D 66 D 66 1.203 4 0.128 0.128 1.588 79.286 39.643 LGA F 67 F 67 2.181 7 0.066 0.066 2.258 66.786 24.286 LGA H 68 H 68 3.487 6 0.263 0.263 3.487 53.571 21.429 LGA W 69 W 69 2.470 10 0.077 0.077 2.826 62.857 17.959 LGA T 70 T 70 2.645 3 0.350 0.350 4.161 52.143 29.796 LGA L 71 L 71 2.487 4 0.054 0.054 2.487 66.786 33.393 LGA A 75 A 75 3.193 1 0.558 0.558 4.254 50.357 40.286 LGA N 76 N 76 3.077 4 0.573 0.573 3.280 53.571 26.786 LGA S 77 S 77 2.499 2 0.020 0.020 2.637 62.857 41.905 LGA Y 78 Y 78 1.732 8 0.010 0.010 1.982 72.857 24.286 LGA T 79 T 79 1.479 3 0.167 0.167 2.019 75.119 42.925 LGA L 80 L 80 1.065 4 0.072 0.072 1.138 81.429 40.714 LGA T 81 T 81 0.997 3 0.159 0.159 1.568 81.548 46.599 LGA V 82 V 82 0.633 3 0.202 0.202 1.105 88.214 50.408 LGA N 83 N 83 0.754 4 0.189 0.189 1.341 88.214 44.107 LGA V 84 V 84 0.508 3 0.153 0.153 1.246 88.333 50.476 LGA D 85 D 85 2.393 4 0.192 0.192 2.393 66.786 33.393 LGA P 86 P 86 1.609 3 0.113 0.113 1.870 72.857 41.633 LGA E 87 E 87 1.675 5 0.057 0.057 1.749 75.000 33.333 LGA N 88 N 88 1.871 4 0.103 0.103 2.356 68.810 34.405 LGA A 89 A 89 2.475 1 0.144 0.144 2.475 66.786 53.429 LGA V 90 V 90 2.280 3 0.083 0.083 2.585 60.952 34.830 LGA N 91 N 91 2.630 4 0.083 0.083 2.630 64.881 32.440 LGA E 92 E 92 2.923 5 0.013 0.013 2.971 57.143 25.397 LGA G 93 G 93 2.681 0 0.293 0.293 3.222 57.262 57.262 LGA N 94 N 94 1.395 4 0.086 0.086 1.979 75.000 37.500 LGA E 95 E 95 2.145 5 0.221 0.221 2.145 72.976 32.434 LGA S 96 S 96 1.622 2 0.091 0.091 1.869 75.000 50.000 LGA N 97 N 97 0.823 4 0.284 0.284 0.823 95.238 47.619 LGA N 98 N 98 1.035 4 0.090 0.090 1.045 85.952 42.976 LGA T 99 T 99 0.992 3 0.055 0.055 1.264 83.690 47.823 LGA L 100 L 100 0.984 4 0.199 0.199 0.996 90.476 45.238 LGA T 101 T 101 2.028 3 0.149 0.149 2.940 64.881 37.075 LGA A 102 A 102 2.432 1 0.076 0.076 2.432 64.762 51.810 LGA L 103 L 103 1.788 4 0.040 0.040 2.343 66.786 33.393 LGA V 104 V 104 2.677 3 0.012 0.012 2.677 60.952 34.830 LGA G 105 G 105 2.957 0 0.185 0.185 3.443 53.571 53.571 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 101 404 404 100.00 752 404 53.72 102 SUMMARY(RMSD_GDC): 2.112 2.122 2.122 70.739 39.462 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 101 102 4.0 100 2.06 73.284 80.829 4.638 LGA_LOCAL RMSD: 2.056 Number of atoms: 100 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.113 Number of assigned atoms: 101 Std_ASGN_ATOMS RMSD: 2.112 Standard rmsd on all 101 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.811240 * X + 0.567455 * Y + 0.141011 * Z + 2.630927 Y_new = -0.409174 * X + -0.378664 * Y + -0.830175 * Z + 7.917943 Z_new = -0.417692 * X + -0.731169 * Y + 0.539375 * Z + -18.693937 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.674446 0.430903 -0.935221 [DEG: -153.2345 24.6889 -53.5842 ] ZXZ: 0.168251 1.001101 -2.622569 [DEG: 9.6401 57.3589 -150.2622 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0541TS328_1-D1 REMARK 2: T0541-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0541TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 101 102 4.0 100 2.06 80.829 2.11 REMARK ---------------------------------------------------------- MOLECULE T0541TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0541 REMARK MODEL 1 REMARK PARENT 3idu_B ATOM 1 N MET 1 -13.838 15.096 -11.267 1.00 3.00 N ATOM 2 CA MET 1 -13.133 15.583 -10.078 1.00 3.00 C ATOM 3 C MET 1 -13.359 14.826 -8.773 1.00 3.00 C ATOM 4 O MET 1 -14.047 15.307 -7.869 1.00 3.00 O ATOM 5 N ILE 2 -12.751 13.652 -8.666 1.00 3.00 N ATOM 6 CA ILE 2 -12.890 12.832 -7.475 1.00 3.00 C ATOM 7 C ILE 2 -11.656 11.950 -7.352 1.00 3.00 C ATOM 8 O ILE 2 -11.127 11.471 -8.352 1.00 3.00 O ATOM 9 N PRO 3 -11.177 11.730 -6.122 1.00 3.00 N ATOM 10 CA PRO 3 -9.992 10.892 -5.923 1.00 3.00 C ATOM 11 C PRO 3 -10.274 9.399 -6.077 1.00 3.00 C ATOM 12 O PRO 3 -11.425 8.964 -6.046 1.00 3.00 O ATOM 13 N ASP 4 -9.212 8.626 -6.278 1.00 3.00 N ATOM 14 CA ASP 4 -9.323 7.175 -6.362 1.00 3.00 C ATOM 15 C ASP 4 -8.057 6.577 -6.923 1.00 3.00 C ATOM 16 O ASP 4 -7.866 6.540 -8.136 1.00 3.00 O ATOM 17 N LEU 5 -7.163 6.146 -6.035 1.00 3.00 N ATOM 18 CA LEU 5 -5.902 5.553 -6.441 1.00 3.00 C ATOM 19 C LEU 5 -5.734 4.288 -5.644 1.00 3.00 C ATOM 20 O LEU 5 -6.107 4.243 -4.481 1.00 3.00 O ATOM 21 N VAL 6 -5.215 3.247 -6.269 1.00 3.00 N ATOM 22 CA VAL 6 -5.003 1.997 -5.551 1.00 3.00 C ATOM 23 C VAL 6 -3.773 2.155 -4.643 1.00 3.00 C ATOM 24 O VAL 6 -2.660 2.361 -5.124 1.00 3.00 O ATOM 25 N PRO 7 -3.958 2.049 -3.311 1.00 9.00 N ATOM 26 CA PRO 7 -2.863 2.228 -2.345 1.00 9.00 C ATOM 27 C PRO 7 -1.943 1.039 -2.188 1.00 9.00 C ATOM 28 O PRO 7 -0.918 1.142 -1.520 1.00 9.00 O ATOM 29 N VAL 8 -2.303 -0.083 -2.779 1.00 3.00 N ATOM 30 CA VAL 8 -1.462 -1.258 -2.648 1.00 3.00 C ATOM 31 C VAL 8 -0.412 -1.300 -3.743 1.00 3.00 C ATOM 32 O VAL 8 -0.702 -1.661 -4.863 1.00 3.00 O ATOM 33 N SER 9 0.823 -0.953 -3.402 1.00 3.00 N ATOM 34 CA SER 9 1.864 -0.941 -4.416 1.00 3.00 C ATOM 35 C SER 9 2.695 -2.218 -4.457 1.00 3.00 C ATOM 36 O SER 9 3.606 -2.341 -5.283 1.00 3.00 O ATOM 37 N LEU 10 2.410 -3.183 -3.596 1.00 3.00 N ATOM 38 CA LEU 10 3.178 -4.426 -3.661 1.00 3.00 C ATOM 39 C LEU 10 4.286 -4.928 -4.581 1.00 3.00 C ATOM 40 O LEU 10 4.031 -5.697 -5.509 1.00 3.00 O ATOM 41 N THR 11 5.512 -4.490 -4.323 1.00 3.00 N ATOM 42 CA THR 11 6.672 -4.927 -5.096 1.00 3.00 C ATOM 43 C THR 11 7.684 -5.485 -4.102 1.00 3.00 C ATOM 44 O THR 11 7.760 -5.027 -2.964 1.00 3.00 O ATOM 45 N PRO 12 8.455 -6.480 -4.515 1.00 3.00 N ATOM 46 CA PRO 12 9.439 -7.035 -3.604 1.00 3.00 C ATOM 47 C PRO 12 9.848 -8.445 -3.971 1.00 3.00 C ATOM 48 O PRO 12 9.414 -8.968 -4.996 1.00 3.00 O ATOM 49 N VAL 13 10.693 -9.085 -3.151 1.00 3.00 N ATOM 50 CA VAL 13 11.140 -10.453 -3.431 1.00 3.00 C ATOM 51 C VAL 13 10.051 -11.467 -3.100 1.00 3.00 C ATOM 52 O VAL 13 9.393 -11.359 -2.064 1.00 3.00 O ATOM 53 N THR 14 9.859 -12.449 -3.978 1.00 3.00 N ATOM 54 CA THR 14 8.833 -13.474 -3.762 1.00 3.00 C ATOM 55 C THR 14 8.752 -14.190 -2.428 1.00 3.00 C ATOM 56 O THR 14 7.661 -14.545 -1.988 1.00 3.00 O ATOM 57 N VAL 15 9.900 -14.459 -1.811 1.00 3.00 N ATOM 58 CA VAL 15 9.948 -15.104 -0.518 1.00 3.00 C ATOM 59 C VAL 15 11.346 -14.943 0.076 1.00 3.00 C ATOM 60 O VAL 15 12.323 -14.892 -0.673 1.00 3.00 O ATOM 61 N VAL 16 11.437 -14.823 1.395 1.00 3.00 N ATOM 62 CA VAL 16 12.733 -14.682 2.065 1.00 3.00 C ATOM 63 C VAL 16 12.620 -15.350 3.413 1.00 3.00 C ATOM 64 O VAL 16 11.586 -15.219 4.072 1.00 3.00 O ATOM 65 N PRO 17 13.678 -16.036 3.836 1.00 3.00 N ATOM 66 CA PRO 17 13.712 -16.679 5.132 1.00 3.00 C ATOM 67 C PRO 17 15.145 -16.521 5.639 1.00 3.00 C ATOM 68 O PRO 17 16.079 -16.550 4.837 1.00 3.00 O ATOM 73 N THR 19 16.628 -13.790 6.768 1.00 3.00 N ATOM 74 CA THR 19 17.222 -12.479 6.568 1.00 3.00 C ATOM 75 C THR 19 16.332 -11.245 6.367 1.00 3.00 C ATOM 76 O THR 19 15.112 -11.325 6.492 1.00 3.00 O ATOM 77 N VAL 20 16.948 -10.108 6.064 1.00 3.00 N ATOM 78 CA VAL 20 16.201 -8.870 5.870 1.00 3.00 C ATOM 79 C VAL 20 15.680 -8.743 4.439 1.00 3.00 C ATOM 80 O VAL 20 16.459 -8.751 3.487 1.00 3.00 O ATOM 81 N ASN 21 14.362 -8.631 4.291 1.00 3.00 N ATOM 82 CA ASN 21 13.752 -8.486 2.973 1.00 3.00 C ATOM 83 C ASN 21 13.089 -7.117 2.892 1.00 3.00 C ATOM 84 O ASN 21 12.384 -6.709 3.815 1.00 3.00 O ATOM 85 N THR 22 13.317 -6.406 1.794 1.00 3.00 N ATOM 86 CA THR 22 12.732 -5.085 1.621 1.00 3.00 C ATOM 87 C THR 22 11.606 -5.090 0.596 1.00 3.00 C ATOM 88 O THR 22 11.761 -5.607 -0.513 1.00 3.00 O ATOM 89 N MET 23 10.476 -4.502 0.978 1.00 3.00 N ATOM 90 CA MET 23 9.321 -4.421 0.099 1.00 3.00 C ATOM 91 C MET 23 8.922 -2.986 -0.144 1.00 3.00 C ATOM 92 O MET 23 9.298 -2.084 0.607 1.00 3.00 O ATOM 93 N THR 24 8.161 -2.784 -1.209 1.00 3.00 N ATOM 94 CA THR 24 7.682 -1.458 -1.550 1.00 3.00 C ATOM 95 C THR 24 6.176 -1.525 -1.689 1.00 3.00 C ATOM 96 O THR 24 5.630 -2.472 -2.255 1.00 3.00 O ATOM 97 N ALA 25 5.507 -0.519 -1.148 1.00 3.00 N ATOM 98 CA ALA 25 4.068 -0.433 -1.255 1.00 3.00 C ATOM 99 C ALA 25 3.855 0.827 -2.075 1.00 3.00 C ATOM 100 O ALA 25 4.163 1.933 -1.631 1.00 3.00 O ATOM 101 N THR 26 3.390 0.647 -3.305 1.00 3.00 N ATOM 102 CA THR 26 3.138 1.774 -4.194 1.00 3.00 C ATOM 103 C THR 26 1.679 2.172 -4.022 1.00 3.00 C ATOM 104 O THR 26 0.773 1.403 -4.351 1.00 3.00 O ATOM 105 N ILE 27 1.461 3.369 -3.484 1.00 3.00 N ATOM 106 CA ILE 27 0.118 3.886 -3.259 1.00 3.00 C ATOM 107 C ILE 27 -0.107 5.027 -4.245 1.00 3.00 C ATOM 108 O ILE 27 0.690 5.957 -4.323 1.00 3.00 O ATOM 109 N GLU 28 -1.190 4.949 -5.011 1.00 3.00 N ATOM 110 CA GLU 28 -1.453 5.976 -6.008 1.00 3.00 C ATOM 111 C GLU 28 -2.844 6.572 -5.920 1.00 3.00 C ATOM 112 O GLU 28 -3.763 5.972 -5.364 1.00 3.00 O ATOM 113 N ASN 29 -2.979 7.770 -6.477 1.00 3.00 N ATOM 114 CA ASN 29 -4.262 8.448 -6.541 1.00 3.00 C ATOM 115 C ASN 29 -4.494 8.682 -8.027 1.00 3.00 C ATOM 116 O ASN 29 -3.796 9.475 -8.655 1.00 3.00 O ATOM 117 N GLN 30 -5.463 7.968 -8.585 1.00 3.00 N ATOM 118 CA GLN 30 -5.785 8.076 -10.001 1.00 3.00 C ATOM 119 C GLN 30 -6.766 9.212 -10.275 1.00 3.00 C ATOM 120 O GLN 30 -7.050 9.523 -11.429 1.00 3.00 O ATOM 121 N GLY 31 -7.276 9.823 -9.210 1.00 3.00 N ATOM 122 CA GLY 31 -8.242 10.901 -9.353 1.00 3.00 C ATOM 123 C GLY 31 -7.690 12.283 -9.646 1.00 3.00 C ATOM 124 O GLY 31 -6.487 12.532 -9.518 1.00 3.00 O ATOM 125 N ASN 32 -8.586 13.189 -10.033 1.00 3.00 N ATOM 126 CA ASN 32 -8.199 14.556 -10.355 1.00 3.00 C ATOM 127 C ASN 32 -8.157 15.472 -9.147 1.00 3.00 C ATOM 128 O ASN 32 -7.799 16.650 -9.254 1.00 3.00 O ATOM 129 N LYS 33 -8.551 14.936 -7.997 1.00 3.00 N ATOM 130 CA LYS 33 -8.540 15.680 -6.742 1.00 3.00 C ATOM 131 C LYS 33 -7.625 14.929 -5.785 1.00 3.00 C ATOM 132 O LYS 33 -7.621 13.699 -5.761 1.00 3.00 O ATOM 133 N ASP 34 -6.843 15.670 -5.005 1.00 3.00 N ATOM 134 CA ASP 34 -5.919 15.037 -4.084 1.00 3.00 C ATOM 135 C ASP 34 -6.532 14.434 -2.836 1.00 3.00 C ATOM 136 O ASP 34 -7.717 14.598 -2.550 1.00 3.00 O ATOM 137 N SER 35 -5.703 13.712 -2.091 1.00 3.00 N ATOM 138 CA SER 35 -6.124 13.094 -0.846 1.00 3.00 C ATOM 139 C SER 35 -5.118 13.570 0.194 1.00 3.00 C ATOM 140 O SER 35 -3.982 13.099 0.242 1.00 3.00 O ATOM 141 N THR 36 -5.523 14.546 1.023 1.00 3.00 N ATOM 142 CA THR 36 -4.687 15.125 2.076 1.00 3.00 C ATOM 143 C THR 36 -4.140 14.099 3.056 1.00 3.00 C ATOM 144 O THR 36 -2.974 14.164 3.446 1.00 3.00 O ATOM 145 N SER 37 -4.979 13.146 3.445 1.00 3.00 N ATOM 146 CA SER 37 -4.558 12.132 4.396 1.00 3.00 C ATOM 147 C SER 37 -5.371 10.840 4.313 1.00 3.00 C ATOM 148 O SER 37 -6.602 10.864 4.320 1.00 3.00 O ATOM 149 N PHE 38 -4.674 9.714 4.225 1.00 3.00 N ATOM 150 CA PHE 38 -5.334 8.417 4.181 1.00 3.00 C ATOM 151 C PHE 38 -4.406 7.384 4.811 1.00 3.00 C ATOM 152 O PHE 38 -3.182 7.550 4.831 1.00 3.00 O ATOM 153 N ASN 39 -4.998 6.327 5.347 1.00 3.00 N ATOM 154 CA ASN 39 -4.226 5.293 6.008 1.00 3.00 C ATOM 155 C ASN 39 -3.891 4.104 5.111 1.00 3.00 C ATOM 156 O ASN 39 -4.730 3.610 4.360 1.00 3.00 O ATOM 157 N VAL 40 -2.638 3.672 5.179 1.00 3.00 N ATOM 158 CA VAL 40 -2.180 2.523 4.419 1.00 3.00 C ATOM 159 C VAL 40 -1.738 1.509 5.463 1.00 3.00 C ATOM 160 O VAL 40 -1.102 1.861 6.462 1.00 3.00 O ATOM 161 N SER 41 -2.098 0.253 5.243 1.00 3.00 N ATOM 162 CA SER 41 -1.738 -0.795 6.182 1.00 3.00 C ATOM 163 C SER 41 -1.164 -1.971 5.425 1.00 3.00 C ATOM 164 O SER 41 -1.519 -2.211 4.270 1.00 3.00 O ATOM 165 N LEU 42 -0.246 -2.680 6.071 1.00 3.00 N ATOM 166 CA LEU 42 0.333 -3.875 5.489 1.00 3.00 C ATOM 167 C LEU 42 0.136 -4.979 6.513 1.00 3.00 C ATOM 168 O LEU 42 0.371 -4.781 7.704 1.00 3.00 O ATOM 169 N LEU 43 -0.329 -6.128 6.038 1.00 3.00 N ATOM 170 CA LEU 43 -0.565 -7.296 6.873 1.00 3.00 C ATOM 171 C LEU 43 0.315 -8.428 6.351 1.00 3.00 C ATOM 172 O LEU 43 0.623 -8.494 5.159 1.00 3.00 O ATOM 173 N VAL 44 0.723 -9.312 7.252 1.00 3.00 N ATOM 174 CA VAL 44 1.509 -10.484 6.886 1.00 3.00 C ATOM 175 C VAL 44 0.718 -11.624 7.507 1.00 3.00 C ATOM 176 O VAL 44 0.610 -11.715 8.730 1.00 3.00 O ATOM 177 N ASP 45 0.166 -12.484 6.657 1.00 3.00 N ATOM 178 CA ASP 45 -0.664 -13.602 7.099 1.00 3.00 C ATOM 179 C ASP 45 -1.795 -13.167 8.037 1.00 3.00 C ATOM 180 O ASP 45 -2.059 -13.808 9.053 1.00 3.00 O ATOM 181 N GLY 46 -2.451 -12.063 7.688 1.00 3.00 N ATOM 182 CA GLY 46 -3.567 -11.575 8.481 1.00 3.00 C ATOM 183 C GLY 46 -3.235 -10.725 9.692 1.00 3.00 C ATOM 184 O GLY 46 -4.131 -10.150 10.314 1.00 3.00 O ATOM 185 N ILE 47 -1.951 -10.645 10.024 1.00 3.00 N ATOM 186 CA ILE 47 -1.487 -9.861 11.170 1.00 3.00 C ATOM 187 C ILE 47 -1.057 -8.471 10.728 1.00 3.00 C ATOM 188 O ILE 47 -0.221 -8.349 9.838 1.00 3.00 O ATOM 189 N VAL 48 -1.613 -7.426 11.338 1.00 3.00 N ATOM 190 CA VAL 48 -1.215 -6.067 10.965 1.00 3.00 C ATOM 191 C VAL 48 0.274 -5.936 11.263 1.00 3.00 C ATOM 192 O VAL 48 0.724 -6.244 12.366 1.00 3.00 O ATOM 193 N VAL 49 1.031 -5.468 10.278 1.00 3.00 N ATOM 194 CA VAL 49 2.469 -5.337 10.420 1.00 3.00 C ATOM 195 C VAL 49 2.943 -3.893 10.520 1.00 3.00 C ATOM 196 O VAL 49 3.669 -3.528 11.446 1.00 3.00 O ATOM 197 N ASP 50 2.525 -3.070 9.564 1.00 3.00 N ATOM 198 CA ASP 50 2.924 -1.668 9.557 1.00 3.00 C ATOM 199 C ASP 50 1.798 -0.742 9.111 1.00 3.00 C ATOM 200 O ASP 50 0.965 -1.107 8.278 1.00 3.00 O ATOM 201 N THR 51 1.791 0.457 9.689 1.00 3.00 N ATOM 202 CA THR 51 0.800 1.493 9.394 1.00 3.00 C ATOM 203 C THR 51 1.497 2.745 8.892 1.00 3.00 C ATOM 204 O THR 51 2.600 3.066 9.332 1.00 3.00 O ATOM 205 N GLN 52 0.830 3.453 7.989 1.00 3.00 N ATOM 206 CA GLN 52 1.337 4.704 7.431 1.00 3.00 C ATOM 207 C GLN 52 0.155 5.632 7.207 1.00 3.00 C ATOM 208 O GLN 52 -0.958 5.184 6.938 1.00 3.00 O ATOM 209 N THR 53 0.402 6.929 7.327 1.00 3.00 N ATOM 210 CA THR 53 -0.614 7.932 7.045 1.00 3.00 C ATOM 211 C THR 53 -0.297 9.266 6.384 1.00 3.00 C ATOM 212 O THR 53 0.206 10.192 7.025 1.00 3.00 O ATOM 213 N VAL 54 -0.605 9.369 5.097 1.00 3.00 N ATOM 214 CA VAL 54 -0.303 10.579 4.356 1.00 3.00 C ATOM 215 C VAL 54 -1.153 10.691 3.102 1.00 3.00 C ATOM 216 O VAL 54 -1.792 9.730 2.677 1.00 3.00 O ATOM 217 N THR 55 -1.130 11.873 2.504 1.00 3.00 N ATOM 218 CA THR 55 -1.736 12.074 1.180 1.00 3.00 C ATOM 219 C THR 55 -0.832 11.429 0.137 1.00 3.00 C ATOM 220 O THR 55 0.214 11.979 -0.228 1.00 3.00 O ATOM 221 N SER 56 -1.199 10.249 -0.370 1.00 9.00 N ATOM 222 CA SER 56 -0.362 9.624 -1.390 1.00 9.00 C ATOM 223 C SER 56 -0.811 10.039 -2.770 1.00 9.00 C ATOM 224 O SER 56 0.030 10.299 -3.648 1.00 9.00 O ATOM 225 N LEU 57 -2.128 10.100 -3.012 1.00 3.00 N ATOM 226 CA LEU 57 -2.602 10.527 -4.331 1.00 3.00 C ATOM 227 C LEU 57 -3.080 11.972 -4.296 1.00 3.00 C ATOM 228 O LEU 57 -4.256 12.284 -4.103 1.00 3.00 O ATOM 229 N GLU 58 -2.131 12.884 -4.516 1.00 3.00 N ATOM 230 CA GLU 58 -2.430 14.315 -4.549 1.00 3.00 C ATOM 231 C GLU 58 -3.408 14.716 -5.636 1.00 3.00 C ATOM 232 O GLU 58 -4.353 15.484 -5.471 1.00 3.00 O ATOM 233 N SER 59 -3.188 14.173 -6.828 1.00 3.00 N ATOM 234 CA SER 59 -4.066 14.431 -7.959 1.00 3.00 C ATOM 235 C SER 59 -3.078 13.684 -8.862 1.00 3.00 C ATOM 236 O SER 59 -1.949 14.137 -9.071 1.00 3.00 O ATOM 237 N GLU 60 -3.511 12.538 -9.382 1.00 3.00 N ATOM 238 CA GLU 60 -2.684 11.706 -10.253 1.00 3.00 C ATOM 239 C GLU 60 -1.233 11.654 -9.788 1.00 3.00 C ATOM 240 O GLU 60 -0.309 11.930 -10.551 1.00 3.00 O ATOM 241 N ASN 61 -1.047 11.292 -8.524 1.00 3.00 N ATOM 242 CA ASN 61 0.279 11.206 -7.927 1.00 3.00 C ATOM 243 C ASN 61 0.503 9.819 -7.335 1.00 3.00 C ATOM 244 O ASN 61 -0.445 9.133 -6.949 1.00 3.00 O ATOM 245 N SER 62 1.764 9.416 -7.261 1.00 3.00 N ATOM 246 CA SER 62 2.110 8.116 -6.715 1.00 3.00 C ATOM 247 C SER 62 3.285 8.236 -5.762 1.00 3.00 C ATOM 248 O SER 62 4.269 8.916 -6.058 1.00 3.00 O ATOM 249 N THR 63 3.171 7.584 -4.611 1.00 3.00 N ATOM 250 CA THR 63 4.243 7.591 -3.628 1.00 3.00 C ATOM 251 C THR 63 4.641 6.162 -3.327 1.00 3.00 C ATOM 252 O THR 63 3.799 5.260 -3.296 1.00 3.00 O ATOM 253 N ASN 64 5.933 5.953 -3.116 1.00 3.00 N ATOM 254 CA ASN 64 6.429 4.623 -2.821 1.00 3.00 C ATOM 255 C ASN 64 6.819 4.507 -1.361 1.00 3.00 C ATOM 256 O ASN 64 7.707 5.211 -0.886 1.00 3.00 O ATOM 257 N VAL 65 6.125 3.630 -0.647 1.00 3.00 N ATOM 258 CA VAL 65 6.400 3.403 0.760 1.00 3.00 C ATOM 259 C VAL 65 7.277 2.172 0.821 1.00 3.00 C ATOM 260 O VAL 65 7.156 1.273 -0.012 1.00 3.00 O ATOM 261 N ASP 66 8.167 2.128 1.798 1.00 3.00 N ATOM 262 CA ASP 66 9.027 0.974 1.928 1.00 3.00 C ATOM 263 C ASP 66 8.993 0.470 3.358 1.00 3.00 C ATOM 264 O ASP 66 8.785 1.238 4.295 1.00 3.00 O ATOM 265 N PHE 67 9.154 -0.836 3.512 1.00 3.00 N ATOM 266 CA PHE 67 9.210 -1.442 4.828 1.00 3.00 C ATOM 267 C PHE 67 10.147 -2.641 4.740 1.00 3.00 C ATOM 268 O PHE 67 10.410 -3.161 3.651 1.00 3.00 O ATOM 269 N HIS 68 10.659 -3.051 5.893 1.00 3.00 N ATOM 270 CA HIS 68 11.563 -4.188 5.996 1.00 3.00 C ATOM 271 C HIS 68 10.868 -5.274 6.798 1.00 3.00 C ATOM 272 O HIS 68 10.071 -4.981 7.686 1.00 3.00 O ATOM 273 N TRP 69 11.186 -6.525 6.487 1.00 3.00 N ATOM 274 CA TRP 69 10.616 -7.665 7.192 1.00 3.00 C ATOM 275 C TRP 69 11.632 -8.805 7.266 1.00 3.00 C ATOM 276 O TRP 69 12.230 -9.186 6.258 1.00 3.00 O ATOM 277 N THR 70 11.827 -9.341 8.466 1.00 3.00 N ATOM 278 CA THR 70 12.760 -10.445 8.673 1.00 3.00 C ATOM 279 C THR 70 12.475 -11.735 7.888 1.00 3.00 C ATOM 280 O THR 70 12.129 -11.686 6.712 1.00 3.00 O ATOM 281 N LEU 71 12.625 -12.873 8.548 1.00 3.00 N ATOM 282 CA LEU 71 12.383 -14.163 7.922 1.00 3.00 C ATOM 283 C LEU 71 10.892 -14.529 7.869 1.00 3.00 C ATOM 284 O LEU 71 10.282 -14.827 8.890 1.00 3.00 O ATOM 297 N ALA 75 9.193 -19.260 7.663 1.00 3.00 N ATOM 298 CA ALA 75 7.819 -19.470 8.103 1.00 3.00 C ATOM 299 C ALA 75 7.218 -20.551 7.212 1.00 3.00 C ATOM 300 O ALA 75 6.615 -21.505 7.705 1.00 3.00 O ATOM 301 N ASN 76 7.392 -20.393 5.897 1.00 3.00 N ATOM 302 CA ASN 76 6.889 -21.348 4.916 1.00 3.00 C ATOM 303 C ASN 76 6.316 -20.321 3.961 1.00 3.00 C ATOM 304 O ASN 76 7.038 -19.460 3.458 1.00 3.00 O ATOM 305 N SER 77 5.013 -20.416 3.710 1.00 3.00 N ATOM 306 CA SER 77 4.334 -19.491 2.813 1.00 3.00 C ATOM 307 C SER 77 3.755 -18.309 3.583 1.00 3.00 C ATOM 308 O SER 77 3.114 -18.485 4.616 1.00 3.00 O ATOM 309 N TYR 78 3.984 -17.103 3.077 1.00 3.00 N ATOM 310 CA TYR 78 3.482 -15.906 3.738 1.00 3.00 C ATOM 311 C TYR 78 2.702 -15.042 2.758 1.00 3.00 C ATOM 312 O TYR 78 3.131 -14.821 1.628 1.00 3.00 O ATOM 313 N THR 79 1.546 -14.561 3.196 1.00 3.00 N ATOM 314 CA THR 79 0.717 -13.724 2.344 1.00 3.00 C ATOM 315 C THR 79 0.799 -12.283 2.809 1.00 3.00 C ATOM 316 O THR 79 0.442 -11.968 3.942 1.00 3.00 O ATOM 317 N LEU 80 1.286 -11.409 1.943 1.00 3.00 N ATOM 318 CA LEU 80 1.383 -10.000 2.291 1.00 3.00 C ATOM 319 C LEU 80 0.217 -9.268 1.647 1.00 3.00 C ATOM 320 O LEU 80 -0.060 -9.437 0.453 1.00 3.00 O ATOM 321 N THR 81 -0.491 -8.472 2.439 1.00 3.00 N ATOM 322 CA THR 81 -1.607 -7.688 1.916 1.00 3.00 C ATOM 323 C THR 81 -1.340 -6.230 2.259 1.00 3.00 C ATOM 324 O THR 81 -0.771 -5.915 3.306 1.00 3.00 O ATOM 325 N VAL 82 -1.730 -5.340 1.362 1.00 3.00 N ATOM 326 CA VAL 82 -1.570 -3.912 1.598 1.00 3.00 C ATOM 327 C VAL 82 -2.939 -3.328 1.300 1.00 3.00 C ATOM 328 O VAL 82 -3.607 -3.758 0.359 1.00 3.00 O ATOM 329 N ASN 83 -3.373 -2.375 2.109 1.00 3.00 N ATOM 330 CA ASN 83 -4.669 -1.752 1.894 1.00 3.00 C ATOM 331 C ASN 83 -4.529 -0.250 2.007 1.00 3.00 C ATOM 332 O ASN 83 -3.610 0.249 2.657 1.00 3.00 O ATOM 333 N VAL 84 -5.448 0.470 1.375 1.00 3.00 N ATOM 334 CA VAL 84 -5.450 1.922 1.461 1.00 3.00 C ATOM 335 C VAL 84 -6.892 2.345 1.742 1.00 3.00 C ATOM 336 O VAL 84 -7.836 1.840 1.130 1.00 3.00 O ATOM 337 N ASP 85 -7.045 3.242 2.713 1.00 3.00 N ATOM 338 CA ASP 85 -8.344 3.744 3.171 1.00 3.00 C ATOM 339 C ASP 85 -9.311 2.621 3.536 1.00 3.00 C ATOM 340 O ASP 85 -10.487 2.642 3.156 1.00 3.00 O ATOM 341 N PRO 86 -8.813 1.649 4.291 1.00 3.00 N ATOM 342 CA PRO 86 -9.625 0.514 4.704 1.00 3.00 C ATOM 343 C PRO 86 -10.846 0.961 5.507 1.00 3.00 C ATOM 344 O PRO 86 -11.907 0.340 5.432 1.00 3.00 O ATOM 345 N GLU 87 -10.702 2.027 6.288 1.00 3.00 N ATOM 346 CA GLU 87 -11.833 2.521 7.073 1.00 3.00 C ATOM 347 C GLU 87 -12.777 3.325 6.175 1.00 3.00 C ATOM 348 O GLU 87 -13.838 3.769 6.614 1.00 3.00 O ATOM 349 N ASN 88 -12.381 3.491 4.918 1.00 3.00 N ATOM 350 CA ASN 88 -13.146 4.239 3.924 1.00 3.00 C ATOM 351 C ASN 88 -13.612 5.602 4.427 1.00 3.00 C ATOM 352 O ASN 88 -14.812 5.859 4.559 1.00 3.00 O ATOM 353 N ALA 89 -12.646 6.472 4.701 1.00 3.00 N ATOM 354 CA ALA 89 -12.925 7.821 5.173 1.00 3.00 C ATOM 355 C ALA 89 -12.853 8.792 4.002 1.00 3.00 C ATOM 356 O ALA 89 -13.159 9.976 4.140 1.00 3.00 O ATOM 357 N VAL 90 -12.438 8.292 2.843 1.00 3.00 N ATOM 358 CA VAL 90 -12.364 9.131 1.657 1.00 3.00 C ATOM 359 C VAL 90 -13.161 8.495 0.518 1.00 3.00 C ATOM 360 O VAL 90 -12.886 7.374 0.079 1.00 3.00 O ATOM 361 N ASN 91 -14.193 9.212 0.086 1.00 3.00 N ATOM 362 CA ASN 91 -15.050 8.746 -0.990 1.00 3.00 C ATOM 363 C ASN 91 -14.253 8.778 -2.278 1.00 3.00 C ATOM 364 O ASN 91 -13.660 9.797 -2.634 1.00 3.00 O ATOM 365 N GLU 92 -14.247 7.648 -2.973 1.00 3.00 N ATOM 366 CA GLU 92 -13.493 7.502 -4.208 1.00 3.00 C ATOM 367 C GLU 92 -14.355 7.061 -5.379 1.00 3.00 C ATOM 368 O GLU 92 -15.496 6.626 -5.203 1.00 3.00 O ATOM 369 N GLY 93 -13.792 7.150 -6.577 1.00 3.00 N ATOM 370 CA GLY 93 -14.508 6.719 -7.769 1.00 3.00 C ATOM 371 C GLY 93 -14.634 5.202 -7.704 1.00 3.00 C ATOM 372 O GLY 93 -15.646 4.636 -8.108 1.00 3.00 O ATOM 373 N ASN 94 -13.597 4.550 -7.186 1.00 3.00 N ATOM 374 CA ASN 94 -13.586 3.096 -7.068 1.00 3.00 C ATOM 375 C ASN 94 -13.137 2.733 -5.653 1.00 3.00 C ATOM 376 O ASN 94 -12.025 3.064 -5.254 1.00 3.00 O ATOM 377 N GLU 95 -13.996 2.064 -4.889 1.00 3.00 N ATOM 378 CA GLU 95 -13.648 1.683 -3.516 1.00 3.00 C ATOM 379 C GLU 95 -13.183 0.237 -3.477 1.00 3.00 C ATOM 380 O GLU 95 -12.855 -0.290 -2.416 1.00 3.00 O ATOM 381 N SER 96 -13.133 -0.382 -4.653 1.00 3.00 N ATOM 382 CA SER 96 -12.784 -1.791 -4.777 1.00 3.00 C ATOM 383 C SER 96 -11.438 -2.128 -5.404 1.00 3.00 C ATOM 384 O SER 96 -11.220 -3.255 -5.850 1.00 3.00 O ATOM 385 N ASN 97 -10.537 -1.157 -5.449 1.00 3.00 N ATOM 386 CA ASN 97 -9.213 -1.394 -6.006 1.00 3.00 C ATOM 387 C ASN 97 -8.238 -0.901 -4.949 1.00 3.00 C ATOM 388 O ASN 97 -7.138 -0.452 -5.255 1.00 3.00 O ATOM 389 N ASN 98 -8.662 -1.021 -3.695 1.00 3.00 N ATOM 390 CA ASN 98 -7.890 -0.551 -2.548 1.00 3.00 C ATOM 391 C ASN 98 -7.111 -1.621 -1.798 1.00 3.00 C ATOM 392 O ASN 98 -6.603 -1.354 -0.715 1.00 3.00 O ATOM 393 N THR 99 -7.006 -2.822 -2.362 1.00 3.00 N ATOM 394 CA THR 99 -6.293 -3.906 -1.694 1.00 3.00 C ATOM 395 C THR 99 -5.337 -4.629 -2.631 1.00 3.00 C ATOM 396 O THR 99 -5.659 -4.863 -3.796 1.00 3.00 O ATOM 397 N LEU 100 -4.157 -4.974 -2.116 1.00 3.00 N ATOM 398 CA LEU 100 -3.147 -5.690 -2.896 1.00 3.00 C ATOM 399 C LEU 100 -2.724 -6.951 -2.150 1.00 3.00 C ATOM 400 O LEU 100 -2.772 -7.002 -0.923 1.00 3.00 O ATOM 401 N THR 101 -2.320 -7.964 -2.910 1.00 3.00 N ATOM 402 CA THR 101 -1.894 -9.244 -2.350 1.00 3.00 C ATOM 403 C THR 101 -0.581 -9.661 -3.009 1.00 3.00 C ATOM 404 O THR 101 -0.422 -9.520 -4.218 1.00 3.00 O ATOM 405 N ALA 102 0.350 -10.177 -2.211 1.00 3.00 N ATOM 406 CA ALA 102 1.656 -10.600 -2.704 1.00 3.00 C ATOM 407 C ALA 102 2.142 -11.778 -1.861 1.00 3.00 C ATOM 408 O ALA 102 2.345 -11.638 -0.653 1.00 3.00 O ATOM 409 N LEU 103 2.320 -12.940 -2.487 1.00 3.00 N ATOM 410 CA LEU 103 2.786 -14.117 -1.759 1.00 3.00 C ATOM 411 C LEU 103 4.306 -14.240 -1.750 1.00 3.00 C ATOM 412 O LEU 103 4.970 -14.018 -2.765 1.00 3.00 O ATOM 413 N VAL 104 4.850 -14.606 -0.597 1.00 3.00 N ATOM 414 CA VAL 104 6.290 -14.762 -0.449 1.00 3.00 C ATOM 415 C VAL 104 6.615 -16.140 0.089 1.00 3.00 C ATOM 416 O VAL 104 5.929 -16.652 0.973 1.00 3.00 O ATOM 417 N GLY 105 7.655 -16.748 -0.465 1.00 3.00 N ATOM 418 CA GLY 105 8.077 -18.060 -0.007 1.00 3.00 C ATOM 419 C GLY 105 9.333 -17.868 0.822 1.00 3.00 C ATOM 420 O GLY 105 10.324 -17.314 0.345 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 404 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 49.71 61.5 192 96.5 199 ARMSMC SECONDARY STRUCTURE . . 43.06 67.0 103 94.5 109 ARMSMC SURFACE . . . . . . . . 50.88 60.0 120 96.0 125 ARMSMC BURIED . . . . . . . . 47.70 63.9 72 97.3 74 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 86 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 1 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 0 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.11 (Number of atoms: 101) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.11 101 99.0 102 CRMSCA CRN = ALL/NP . . . . . 0.0209 CRMSCA SECONDARY STRUCTURE . . 1.95 56 100.0 56 CRMSCA SURFACE . . . . . . . . 2.27 64 98.5 65 CRMSCA BURIED . . . . . . . . 1.80 37 100.0 37 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.12 404 79.8 506 CRMSMC SECONDARY STRUCTURE . . 1.97 224 80.3 279 CRMSMC SURFACE . . . . . . . . 2.29 256 79.5 322 CRMSMC BURIED . . . . . . . . 1.79 148 80.4 184 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1090 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1006 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 638 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 655 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 435 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.12 404 27.0 1498 CRMSALL SECONDARY STRUCTURE . . 1.97 224 26.0 862 CRMSALL SURFACE . . . . . . . . 2.29 256 28.0 915 CRMSALL BURIED . . . . . . . . 1.79 148 25.4 583 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.398 0.309 0.345 101 99.0 102 ERRCA SECONDARY STRUCTURE . . 1.611 0.375 0.424 56 100.0 56 ERRCA SURFACE . . . . . . . . 1.269 0.271 0.298 64 98.5 65 ERRCA BURIED . . . . . . . . 1.623 0.375 0.425 37 100.0 37 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.373 0.301 0.335 404 79.8 506 ERRMC SECONDARY STRUCTURE . . 1.554 0.359 0.407 224 80.3 279 ERRMC SURFACE . . . . . . . . 1.249 0.266 0.289 256 79.5 322 ERRMC BURIED . . . . . . . . 1.587 0.363 0.416 148 80.4 184 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1090 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1006 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 638 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 655 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 435 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.373 0.301 0.335 404 27.0 1498 ERRALL SECONDARY STRUCTURE . . 1.554 0.359 0.407 224 26.0 862 ERRALL SURFACE . . . . . . . . 1.249 0.266 0.289 256 28.0 915 ERRALL BURIED . . . . . . . . 1.587 0.363 0.416 148 25.4 583 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 21 62 88 100 101 101 102 DISTCA CA (P) 20.59 60.78 86.27 98.04 99.02 102 DISTCA CA (RMS) 0.76 1.32 1.75 2.06 2.11 DISTCA ALL (N) 71 241 352 399 404 404 1498 DISTALL ALL (P) 4.74 16.09 23.50 26.64 26.97 1498 DISTALL ALL (RMS) 0.75 1.33 1.77 2.05 2.12 DISTALL END of the results output