####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 99 ( 396), selected 99 , name T0541AL396_1-D1 # Molecule2: number of CA atoms 102 ( 1498), selected 99 , name T0541-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0541AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 98 4 - 106 4.57 5.04 LCS_AVERAGE: 95.92 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 65 17 - 85 1.97 5.76 LCS_AVERAGE: 46.10 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 24 47 - 70 0.99 6.36 LCS_AVERAGE: 12.39 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 99 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT P 3 P 3 4 5 82 3 4 4 5 5 8 8 11 12 14 16 21 21 22 26 28 31 34 66 68 LCS_GDT D 4 D 4 4 5 98 3 4 4 5 5 8 8 11 14 14 16 21 21 26 54 58 60 62 66 72 LCS_GDT L 5 L 5 4 5 98 3 4 4 5 5 8 8 11 14 27 30 35 41 48 54 61 68 75 87 91 LCS_GDT V 6 V 6 4 9 98 3 4 5 6 8 20 24 46 55 73 80 82 87 90 92 93 93 96 96 96 LCS_GDT P 7 P 7 4 9 98 3 4 5 6 8 20 24 48 65 77 80 85 87 90 92 93 93 96 96 96 LCS_GDT V 8 V 8 4 9 98 3 4 4 6 8 10 13 18 32 42 48 76 85 90 92 93 93 96 96 96 LCS_GDT S 9 S 9 4 9 98 3 4 4 6 8 10 13 18 32 42 58 76 82 89 92 93 93 96 96 96 LCS_GDT T 11 T 11 5 9 98 3 3 5 6 8 40 49 70 78 80 83 85 87 90 92 93 93 96 96 96 LCS_GDT P 12 P 12 5 9 98 4 5 7 14 26 44 65 75 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 13 V 13 5 9 98 4 5 5 6 8 9 10 15 27 51 65 79 85 90 92 93 93 96 96 96 LCS_GDT T 14 T 14 5 9 98 4 5 5 6 8 9 10 17 35 62 77 82 87 90 92 93 93 96 96 96 LCS_GDT V 15 V 15 5 56 98 4 5 5 6 8 14 27 52 73 79 82 85 87 90 92 93 93 96 96 96 LCS_GDT V 16 V 16 5 59 98 3 5 10 20 31 53 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT P 17 P 17 5 65 98 4 7 18 31 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 19 T 19 9 65 98 3 10 31 50 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 20 V 20 11 65 98 3 10 31 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 21 N 21 14 65 98 5 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 22 T 22 15 65 98 6 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT M 23 M 23 15 65 98 4 14 32 51 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 24 T 24 15 65 98 4 14 32 51 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT A 25 A 25 15 65 98 10 21 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 26 T 26 15 65 98 10 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT I 27 I 27 15 65 98 10 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT E 28 E 28 15 65 98 10 21 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 29 N 29 15 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT Q 30 Q 30 15 65 98 4 12 35 50 60 65 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT G 31 G 31 15 65 98 3 8 35 51 60 66 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 32 N 32 15 65 98 3 21 39 53 60 68 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT K 33 K 33 15 65 98 6 23 39 53 60 68 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT D 34 D 34 15 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 35 S 35 15 65 98 4 21 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 36 T 36 15 65 98 4 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 37 S 37 15 65 98 10 13 32 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT F 38 F 38 15 65 98 3 13 31 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 39 N 39 15 65 98 3 13 33 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 40 V 40 15 65 98 4 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 41 S 41 15 65 98 10 16 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT L 42 L 42 15 65 98 10 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT L 43 L 43 15 65 98 4 12 38 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 44 V 44 15 65 98 4 16 38 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT D 45 D 45 15 65 98 3 12 34 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT G 46 G 46 22 65 98 3 16 38 52 60 68 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT I 47 I 47 24 65 98 8 23 39 52 60 68 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 48 V 48 24 65 98 8 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 49 V 49 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT D 50 D 50 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 51 T 51 24 65 98 4 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT Q 52 Q 52 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 53 T 53 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 54 V 54 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 55 T 55 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 56 S 56 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT L 57 L 57 24 65 98 8 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT E 58 E 58 24 65 98 8 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 59 S 59 24 65 98 8 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT E 60 E 60 24 65 98 4 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 61 N 61 24 65 98 9 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 62 S 62 24 65 98 10 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 63 T 63 24 65 98 10 20 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 64 N 64 24 65 98 10 20 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 65 V 65 24 65 98 3 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT D 66 D 66 24 65 98 7 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT F 67 F 67 24 65 98 5 21 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT H 68 H 68 24 65 98 5 16 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT W 69 W 69 24 65 98 5 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 70 T 70 24 65 98 5 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT L 71 L 71 10 65 98 5 19 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT A 75 A 75 3 65 98 3 3 4 7 11 14 26 50 65 77 81 85 87 90 92 93 93 96 96 96 LCS_GDT N 76 N 76 3 65 98 3 12 30 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 77 S 77 3 65 98 3 3 14 21 51 64 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT Y 78 Y 78 7 65 98 3 6 18 41 59 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 79 T 79 7 65 98 3 9 23 37 58 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT L 80 L 80 7 65 98 4 9 27 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 81 T 81 7 65 98 4 11 27 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 82 V 82 7 65 98 4 12 29 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 83 N 83 7 65 98 4 13 30 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 84 V 84 7 65 98 4 13 32 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT D 85 D 85 7 65 98 4 13 29 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT P 86 P 86 3 10 98 3 3 4 6 19 22 56 73 79 81 83 85 86 90 92 93 93 96 96 96 LCS_GDT E 87 E 87 3 7 98 3 3 4 5 9 13 24 29 41 63 68 82 85 88 92 93 93 96 96 96 LCS_GDT N 88 N 88 4 7 98 3 4 4 5 6 9 40 72 78 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT A 89 A 89 4 7 98 3 4 4 13 19 29 54 68 78 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 90 V 90 4 7 98 3 4 4 5 11 18 23 42 45 53 63 73 79 87 89 91 93 96 96 96 LCS_GDT N 91 N 91 4 7 98 3 4 4 11 20 33 42 48 62 71 81 84 86 89 92 93 93 96 96 96 LCS_GDT E 92 E 92 4 7 98 3 4 4 5 6 8 12 26 36 49 61 73 79 87 89 90 93 96 96 96 LCS_GDT G 93 G 93 4 7 98 3 4 4 5 6 13 23 31 45 58 68 81 85 87 89 92 93 96 96 96 LCS_GDT N 94 N 94 7 13 98 4 9 25 44 55 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT E 95 E 95 7 13 98 3 5 9 39 58 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT S 96 S 96 7 13 98 3 12 27 47 59 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 97 N 97 7 13 98 3 9 23 37 58 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT N 98 N 98 7 13 98 3 9 13 32 48 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 99 T 99 7 13 98 3 9 16 35 53 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT L 100 L 100 7 13 98 3 9 20 37 58 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 101 T 101 7 13 98 4 7 13 31 54 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT A 102 A 102 7 13 98 4 9 13 34 54 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT L 103 L 103 7 13 98 4 9 17 35 55 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT V 104 V 104 7 13 98 4 7 13 23 33 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT G 105 G 105 7 13 98 3 7 13 23 38 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_GDT T 106 T 106 7 13 98 4 7 13 24 50 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 LCS_AVERAGE LCS_A: 51.47 ( 12.39 46.10 95.92 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 10 23 39 53 60 70 74 78 79 81 83 85 87 90 92 93 93 96 96 96 GDT PERCENT_AT 9.80 22.55 38.24 51.96 58.82 68.63 72.55 76.47 77.45 79.41 81.37 83.33 85.29 88.24 90.20 91.18 91.18 94.12 94.12 94.12 GDT RMS_LOCAL 0.30 0.73 1.07 1.46 1.57 2.06 2.10 2.21 2.28 2.43 2.62 2.79 3.09 3.38 3.56 3.65 3.65 3.99 3.99 3.99 GDT RMS_ALL_AT 5.80 6.39 6.32 5.72 5.88 5.28 5.33 5.37 5.36 5.32 5.27 5.23 5.17 5.13 5.11 5.10 5.10 5.09 5.09 5.09 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA P 3 P 3 23.275 3 0.227 0.227 25.256 0.000 0.000 LGA D 4 D 4 19.244 4 0.021 0.021 20.743 0.000 0.000 LGA L 5 L 5 15.449 4 0.224 0.224 17.323 0.000 0.000 LGA V 6 V 6 8.676 3 0.612 0.612 10.886 5.000 2.857 LGA P 7 P 7 7.708 3 0.086 0.086 9.181 4.048 2.313 LGA V 8 V 8 9.969 3 0.568 0.568 10.784 0.833 0.476 LGA S 9 S 9 9.822 2 0.052 0.052 10.185 0.357 0.238 LGA T 11 T 11 6.910 3 0.531 0.531 7.750 12.738 7.279 LGA P 12 P 12 5.738 3 0.462 0.462 7.472 19.048 10.884 LGA V 13 V 13 10.334 3 0.107 0.107 11.746 1.190 0.680 LGA T 14 T 14 9.621 3 0.197 0.197 9.621 4.524 2.585 LGA V 15 V 15 6.106 3 0.139 0.139 7.018 16.429 9.388 LGA V 16 V 16 4.212 3 0.068 0.068 4.512 40.476 23.129 LGA P 17 P 17 2.765 3 0.406 0.406 3.171 59.286 33.878 LGA T 19 T 19 2.843 3 0.169 0.169 3.031 59.167 33.810 LGA V 20 V 20 1.957 3 0.083 0.083 2.867 64.881 37.075 LGA N 21 N 21 1.227 4 0.150 0.150 1.323 83.690 41.845 LGA T 22 T 22 1.543 3 0.126 0.126 2.818 68.929 39.388 LGA M 23 M 23 2.521 4 0.156 0.156 2.521 64.881 32.440 LGA T 24 T 24 2.469 3 0.105 0.105 2.469 64.762 37.007 LGA A 25 A 25 1.691 1 0.024 0.024 1.909 72.857 58.286 LGA T 26 T 26 1.573 3 0.059 0.059 1.751 72.857 41.633 LGA I 27 I 27 1.565 4 0.032 0.032 1.565 75.000 37.500 LGA E 28 E 28 1.736 5 0.019 0.019 2.337 70.833 31.481 LGA N 29 N 29 1.619 4 0.080 0.080 1.904 77.143 38.571 LGA Q 30 Q 30 3.602 5 0.590 0.590 5.609 41.310 18.360 LGA G 31 G 31 3.328 0 0.322 0.322 3.909 50.119 50.119 LGA N 32 N 32 2.349 4 0.272 0.272 2.817 62.857 31.429 LGA K 33 K 33 2.371 5 0.132 0.132 2.371 64.762 28.783 LGA D 34 D 34 1.830 4 0.025 0.025 2.014 70.833 35.417 LGA S 35 S 35 1.393 2 0.017 0.017 1.514 81.548 54.365 LGA T 36 T 36 0.531 3 0.125 0.125 2.690 79.881 45.646 LGA S 37 S 37 1.499 2 0.313 0.313 1.499 83.690 55.794 LGA F 38 F 38 1.809 7 0.286 0.286 1.998 75.000 27.273 LGA N 39 N 39 1.805 4 0.264 0.264 2.418 70.833 35.417 LGA V 40 V 40 0.321 3 0.083 0.083 1.417 92.976 53.129 LGA S 41 S 41 1.241 2 0.134 0.134 1.567 81.548 54.365 LGA L 42 L 42 1.201 4 0.133 0.133 1.532 79.286 39.643 LGA L 43 L 43 1.468 4 0.095 0.095 1.468 81.429 40.714 LGA V 44 V 44 0.956 3 0.095 0.095 1.139 88.214 50.408 LGA D 45 D 45 1.055 4 0.670 0.670 2.678 77.619 38.810 LGA G 46 G 46 2.618 0 0.616 0.616 4.583 48.929 48.929 LGA I 47 I 47 2.631 4 0.022 0.022 2.631 60.952 30.476 LGA V 48 V 48 2.045 3 0.137 0.137 2.306 70.952 40.544 LGA V 49 V 49 1.901 3 0.056 0.056 2.057 70.833 40.476 LGA D 50 D 50 2.052 4 0.101 0.101 2.052 70.833 35.417 LGA T 51 T 51 1.869 3 0.166 0.166 1.869 72.857 41.633 LGA Q 52 Q 52 2.149 5 0.029 0.029 2.149 64.762 28.783 LGA T 53 T 53 2.182 3 0.009 0.009 2.189 64.762 37.007 LGA V 54 V 54 2.099 3 0.034 0.034 2.383 64.762 37.007 LGA T 55 T 55 2.269 3 0.037 0.037 2.302 64.762 37.007 LGA S 56 S 56 2.290 2 0.046 0.046 2.665 62.857 41.905 LGA L 57 L 57 2.245 4 0.070 0.070 2.653 62.857 31.429 LGA E 58 E 58 2.182 5 0.033 0.033 2.197 66.786 29.683 LGA S 59 S 59 1.887 2 0.082 0.082 2.053 70.833 47.222 LGA E 60 E 60 1.679 5 0.066 0.066 1.745 79.405 35.291 LGA N 61 N 61 0.739 4 0.135 0.135 1.456 85.952 42.976 LGA S 62 S 62 1.403 2 0.019 0.019 1.451 81.429 54.286 LGA T 63 T 63 1.789 3 0.047 0.047 1.789 75.000 42.857 LGA N 64 N 64 1.738 4 0.018 0.018 1.928 77.143 38.571 LGA V 65 V 65 1.501 3 0.162 0.162 1.652 77.143 44.082 LGA D 66 D 66 1.335 4 0.014 0.014 1.455 81.429 40.714 LGA F 67 F 67 1.578 7 0.014 0.014 1.578 83.810 30.476 LGA H 68 H 68 0.983 6 0.226 0.226 0.983 92.857 37.143 LGA W 69 W 69 0.708 10 0.132 0.132 0.708 90.476 25.850 LGA T 70 T 70 0.758 3 0.023 0.023 0.758 90.476 51.701 LGA L 71 L 71 0.926 4 0.067 0.067 0.944 90.476 45.238 LGA A 75 A 75 7.596 1 0.162 0.162 9.366 14.048 11.238 LGA N 76 N 76 2.012 4 0.332 0.332 4.416 50.595 25.298 LGA S 77 S 77 3.430 2 0.555 0.555 3.430 59.167 39.444 LGA Y 78 Y 78 2.263 8 0.332 0.332 2.734 60.952 20.317 LGA T 79 T 79 2.485 3 0.358 0.358 3.408 61.071 34.898 LGA L 80 L 80 1.526 4 0.076 0.076 1.652 72.857 36.429 LGA T 81 T 81 1.400 3 0.145 0.145 1.774 79.286 45.306 LGA V 82 V 82 1.266 3 0.176 0.176 1.712 79.286 45.306 LGA N 83 N 83 1.057 4 0.119 0.119 1.057 85.952 42.976 LGA V 84 V 84 0.885 3 0.155 0.155 1.326 85.952 49.116 LGA D 85 D 85 1.691 4 0.297 0.297 3.108 65.357 32.679 LGA P 86 P 86 5.461 3 0.561 0.561 6.675 23.452 13.401 LGA E 87 E 87 8.546 5 0.120 0.120 8.696 5.714 2.540 LGA N 88 N 88 6.208 4 0.030 0.030 6.541 16.190 8.095 LGA A 89 A 89 7.303 1 0.267 0.267 8.677 8.690 6.952 LGA V 90 V 90 10.966 3 0.103 0.103 10.966 0.119 0.068 LGA N 91 N 91 9.136 4 0.061 0.061 10.007 0.595 0.298 LGA E 92 E 92 10.862 5 0.507 0.507 10.862 0.357 0.159 LGA G 93 G 93 10.016 0 0.245 0.245 10.716 5.000 5.000 LGA N 94 N 94 2.784 4 0.505 0.505 5.546 50.119 25.060 LGA E 95 E 95 2.807 5 0.025 0.025 3.073 59.167 26.296 LGA S 96 S 96 1.643 2 0.056 0.056 2.393 70.833 47.222 LGA N 97 N 97 2.749 4 0.064 0.064 4.009 52.262 26.131 LGA N 98 N 98 3.838 4 0.256 0.256 3.838 46.667 23.333 LGA T 99 T 99 3.450 3 0.055 0.055 3.617 48.333 27.619 LGA L 100 L 100 2.687 4 0.161 0.161 2.829 61.071 30.536 LGA T 101 T 101 3.612 3 0.162 0.162 3.612 46.667 26.667 LGA A 102 A 102 3.416 1 0.041 0.041 3.459 50.000 40.000 LGA L 103 L 103 3.065 4 0.072 0.072 3.320 50.000 25.000 LGA V 104 V 104 3.834 3 0.021 0.021 3.834 45.000 25.714 LGA G 105 G 105 3.665 0 0.109 0.109 4.239 41.786 41.786 LGA T 106 T 106 3.077 3 0.034 0.034 4.263 43.571 24.898 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 99 396 396 100.00 735 396 53.88 102 SUMMARY(RMSD_GDC): 5.034 4.920 4.920 53.767 29.499 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 99 102 4.0 78 2.21 60.539 60.359 3.377 LGA_LOCAL RMSD: 2.210 Number of atoms: 78 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.369 Number of assigned atoms: 99 Std_ASGN_ATOMS RMSD: 5.034 Standard rmsd on all 99 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.247259 * X + 0.417749 * Y + -0.874270 * Z + 1.925403 Y_new = 0.725793 * X + -0.677627 * Y + -0.118520 * Z + -2.895447 Z_new = -0.641941 * X + -0.605234 * Y + -0.470749 * Z + 0.705373 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: 1.242453 0.697027 -2.231851 [DEG: 71.1873 39.9367 -127.8757 ] ZXZ: -1.436053 2.060935 -2.326771 [DEG: -82.2798 118.0829 -133.3141 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0541AL396_1-D1 REMARK 2: T0541-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0541AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 99 102 4.0 78 2.21 60.359 5.03 REMARK ---------------------------------------------------------- MOLECULE T0541AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kut_A ATOM 1 N PRO 3 7.082 -4.685 -15.025 1.00 0.00 N ATOM 2 CA PRO 3 7.204 -3.208 -15.178 1.00 0.00 C ATOM 3 C PRO 3 6.886 -2.556 -13.827 1.00 0.00 C ATOM 4 O PRO 3 5.859 -1.897 -13.670 1.00 0.00 O ATOM 5 N ASP 4 7.775 -2.753 -12.859 1.00 0.00 N ATOM 6 CA ASP 4 7.582 -2.192 -11.513 1.00 0.00 C ATOM 7 C ASP 4 6.199 -2.588 -10.961 1.00 0.00 C ATOM 8 O ASP 4 5.238 -1.825 -11.067 1.00 0.00 O ATOM 9 N LEU 5 6.118 -3.778 -10.373 1.00 0.00 N ATOM 10 CA LEU 5 4.840 -4.286 -9.837 1.00 0.00 C ATOM 11 C LEU 5 4.330 -3.385 -8.669 1.00 0.00 C ATOM 12 O LEU 5 5.151 -2.720 -8.037 1.00 0.00 O ATOM 13 N VAL 6 3.057 -3.375 -8.380 1.00 0.00 N ATOM 14 CA VAL 6 2.506 -2.522 -7.254 1.00 0.00 C ATOM 15 C VAL 6 3.229 -2.770 -5.926 1.00 0.00 C ATOM 16 O VAL 6 3.306 -1.894 -5.064 1.00 0.00 O ATOM 17 N PRO 7 3.741 -3.987 -5.768 1.00 0.00 N ATOM 18 CA PRO 7 4.461 -4.394 -4.534 1.00 0.00 C ATOM 19 C PRO 7 5.910 -4.786 -4.882 1.00 0.00 C ATOM 20 O PRO 7 6.158 -5.600 -5.770 1.00 0.00 O ATOM 21 N VAL 8 6.851 -4.215 -4.138 1.00 0.00 N ATOM 22 CA VAL 8 8.292 -4.519 -4.337 1.00 0.00 C ATOM 23 C VAL 8 8.954 -4.822 -2.991 1.00 0.00 C ATOM 24 O VAL 8 8.973 -3.986 -2.089 1.00 0.00 O ATOM 25 N SER 9 9.503 -6.026 -2.874 1.00 0.00 N ATOM 26 CA SER 9 10.175 -6.466 -1.634 1.00 0.00 C ATOM 27 C SER 9 11.703 -6.393 -1.803 1.00 0.00 C ATOM 28 O SER 9 12.232 -6.635 -2.887 1.00 0.00 O ATOM 29 N THR 11 12.396 -6.059 -0.718 1.00 0.00 N ATOM 30 CA THR 11 13.873 -5.954 -0.743 1.00 0.00 C ATOM 31 C THR 11 14.512 -7.342 -0.666 1.00 0.00 C ATOM 32 O THR 11 15.603 -7.505 -0.119 1.00 0.00 O ATOM 33 N PRO 12 13.822 -8.337 -1.215 1.00 0.00 N ATOM 34 CA PRO 12 14.321 -9.721 -1.206 1.00 0.00 C ATOM 35 C PRO 12 15.490 -9.871 -2.203 1.00 0.00 C ATOM 36 O PRO 12 15.527 -10.792 -3.019 1.00 0.00 O ATOM 37 N VAL 13 16.447 -8.954 -2.104 1.00 0.00 N ATOM 38 CA VAL 13 17.624 -8.969 -2.991 1.00 0.00 C ATOM 39 C VAL 13 18.416 -10.269 -2.805 1.00 0.00 C ATOM 40 O VAL 13 18.905 -10.870 -3.761 1.00 0.00 O ATOM 41 N THR 14 18.532 -10.690 -1.548 1.00 0.00 N ATOM 42 CA THR 14 19.273 -11.924 -1.186 1.00 0.00 C ATOM 43 C THR 14 18.318 -12.971 -0.542 1.00 0.00 C ATOM 44 O THR 14 18.168 -12.965 0.680 1.00 0.00 O ATOM 45 N VAL 15 17.707 -13.829 -1.312 1.00 0.00 N ATOM 46 CA VAL 15 16.766 -14.875 -0.732 1.00 0.00 C ATOM 47 C VAL 15 17.348 -15.603 0.505 1.00 0.00 C ATOM 48 O VAL 15 18.297 -16.375 0.379 1.00 0.00 O ATOM 49 N VAL 16 16.771 -15.350 1.675 1.00 0.00 N ATOM 50 CA VAL 16 17.228 -15.980 2.931 1.00 0.00 C ATOM 51 C VAL 16 16.140 -15.859 4.024 1.00 0.00 C ATOM 52 O VAL 16 15.887 -14.779 4.558 1.00 0.00 O ATOM 53 N PRO 17 15.526 -16.990 4.355 1.00 0.00 N ATOM 54 CA PRO 17 14.480 -17.010 5.396 1.00 0.00 C ATOM 55 C PRO 17 15.030 -16.420 6.713 1.00 0.00 C ATOM 56 O PRO 17 16.191 -16.633 7.067 1.00 0.00 O ATOM 61 N THR 19 15.091 -13.163 7.253 1.00 0.00 N ATOM 62 CA THR 19 15.687 -11.853 6.865 1.00 0.00 C ATOM 63 C THR 19 14.611 -10.777 6.827 1.00 0.00 C ATOM 64 O THR 19 13.487 -11.046 6.404 1.00 0.00 O ATOM 65 N VAL 20 14.960 -9.560 7.232 1.00 0.00 N ATOM 66 CA VAL 20 14.005 -8.455 7.206 1.00 0.00 C ATOM 67 C VAL 20 13.815 -7.979 5.761 1.00 0.00 C ATOM 68 O VAL 20 14.782 -7.725 5.042 1.00 0.00 O ATOM 69 N ASN 21 12.557 -7.844 5.354 1.00 0.00 N ATOM 70 CA ASN 21 12.211 -7.385 3.985 1.00 0.00 C ATOM 71 C ASN 21 11.429 -6.074 4.056 1.00 0.00 C ATOM 72 O ASN 21 10.628 -5.858 4.964 1.00 0.00 O ATOM 73 N THR 22 11.664 -5.205 3.077 1.00 0.00 N ATOM 74 CA THR 22 10.978 -3.905 3.025 1.00 0.00 C ATOM 75 C THR 22 9.678 -4.055 2.245 1.00 0.00 C ATOM 76 O THR 22 9.692 -4.281 1.035 1.00 0.00 O ATOM 77 N MET 23 8.554 -3.904 2.941 1.00 0.00 N ATOM 78 CA MET 23 7.234 -4.027 2.291 1.00 0.00 C ATOM 79 C MET 23 6.725 -2.642 1.920 1.00 0.00 C ATOM 80 O MET 23 6.463 -1.821 2.798 1.00 0.00 O ATOM 81 N THR 24 6.578 -2.386 0.623 1.00 0.00 N ATOM 82 CA THR 24 6.091 -1.084 0.128 1.00 0.00 C ATOM 83 C THR 24 4.948 -1.290 -0.862 1.00 0.00 C ATOM 84 O THR 24 5.019 -2.132 -1.757 1.00 0.00 O ATOM 85 N ALA 25 3.895 -0.497 -0.695 1.00 0.00 N ATOM 86 CA ALA 25 2.708 -0.562 -1.569 1.00 0.00 C ATOM 87 C ALA 25 2.525 0.774 -2.299 1.00 0.00 C ATOM 88 O ALA 25 2.467 1.831 -1.671 1.00 0.00 O ATOM 89 N THR 26 2.412 0.708 -3.621 1.00 0.00 N ATOM 90 CA THR 26 2.231 1.923 -4.429 1.00 0.00 C ATOM 91 C THR 26 0.748 2.303 -4.459 1.00 0.00 C ATOM 92 O THR 26 -0.082 1.557 -4.976 1.00 0.00 O ATOM 93 N ILE 27 0.428 3.467 -3.900 1.00 0.00 N ATOM 94 CA ILE 27 -0.977 3.951 -3.855 1.00 0.00 C ATOM 95 C ILE 27 -1.233 4.940 -5.003 1.00 0.00 C ATOM 96 O ILE 27 -0.502 5.917 -5.158 1.00 0.00 O ATOM 97 N GLU 28 -2.269 4.678 -5.794 1.00 0.00 N ATOM 98 CA GLU 28 -2.622 5.549 -6.940 1.00 0.00 C ATOM 99 C GLU 28 -3.717 6.545 -6.532 1.00 0.00 C ATOM 100 O GLU 28 -4.768 6.152 -6.025 1.00 0.00 O ATOM 101 N ASN 29 -3.462 7.828 -6.767 1.00 0.00 N ATOM 102 CA ASN 29 -4.431 8.882 -6.427 1.00 0.00 C ATOM 103 C ASN 29 -5.475 9.007 -7.545 1.00 0.00 C ATOM 104 O ASN 29 -5.186 9.506 -8.633 1.00 0.00 O ATOM 105 N GLN 30 -6.692 8.556 -7.256 1.00 0.00 N ATOM 106 CA GLN 30 -7.802 8.602 -8.226 1.00 0.00 C ATOM 107 C GLN 30 -8.688 9.815 -7.957 1.00 0.00 C ATOM 108 O GLN 30 -8.320 10.705 -7.188 1.00 0.00 O ATOM 109 N GLY 31 -9.853 9.847 -8.596 1.00 0.00 N ATOM 110 CA GLY 31 -10.807 10.955 -8.439 1.00 0.00 C ATOM 111 C GLY 31 -10.561 12.037 -9.496 1.00 0.00 C ATOM 112 O GLY 31 -10.605 11.758 -10.694 1.00 0.00 O ATOM 113 N ASN 32 -10.316 13.263 -9.047 1.00 0.00 N ATOM 114 CA ASN 32 -10.066 14.385 -9.967 1.00 0.00 C ATOM 115 C ASN 32 -9.510 15.597 -9.210 1.00 0.00 C ATOM 116 O ASN 32 -9.444 16.699 -9.755 1.00 0.00 O ATOM 117 N LYS 33 -9.115 15.383 -7.960 1.00 0.00 N ATOM 118 CA LYS 33 -8.564 16.465 -7.116 1.00 0.00 C ATOM 119 C LYS 33 -7.459 15.928 -6.204 1.00 0.00 C ATOM 120 O LYS 33 -7.412 14.739 -5.890 1.00 0.00 O ATOM 121 N ASP 34 -6.575 16.825 -5.781 1.00 0.00 N ATOM 122 CA ASP 34 -5.462 16.454 -4.898 1.00 0.00 C ATOM 123 C ASP 34 -5.998 15.819 -3.593 1.00 0.00 C ATOM 124 O ASP 34 -6.736 16.459 -2.843 1.00 0.00 O ATOM 125 N SER 35 -5.621 14.569 -3.342 1.00 0.00 N ATOM 126 CA SER 35 -6.059 13.843 -2.137 1.00 0.00 C ATOM 127 C SER 35 -5.058 14.049 -1.006 1.00 0.00 C ATOM 128 O SER 35 -3.861 14.216 -1.243 1.00 0.00 O ATOM 129 N THR 36 -5.555 14.021 0.228 1.00 0.00 N ATOM 130 CA THR 36 -4.713 14.197 1.424 1.00 0.00 C ATOM 131 C THR 36 -5.119 13.187 2.495 1.00 0.00 C ATOM 132 O THR 36 -6.190 12.580 2.459 1.00 0.00 O ATOM 133 N SER 37 -4.219 13.008 3.456 1.00 0.00 N ATOM 134 CA SER 37 -4.454 12.060 4.550 1.00 0.00 C ATOM 135 C SER 37 -4.798 10.667 3.989 1.00 0.00 C ATOM 136 O SER 37 -5.917 10.174 4.137 1.00 0.00 O ATOM 137 N PHE 38 -3.811 10.044 3.355 1.00 0.00 N ATOM 138 CA PHE 38 -3.981 8.697 2.753 1.00 0.00 C ATOM 139 C PHE 38 -2.995 7.714 3.417 1.00 0.00 C ATOM 140 O PHE 38 -1.937 7.451 2.844 1.00 0.00 O ATOM 141 N ASN 39 -3.320 7.169 4.557 1.00 0.00 N ATOM 142 CA ASN 39 -2.400 6.198 5.233 1.00 0.00 C ATOM 143 C ASN 39 -2.521 4.803 4.616 1.00 0.00 C ATOM 144 O ASN 39 -3.352 4.551 3.743 1.00 0.00 O ATOM 145 N VAL 40 -1.669 3.899 5.088 1.00 0.00 N ATOM 146 CA VAL 40 -1.656 2.502 4.583 1.00 0.00 C ATOM 147 C VAL 40 -1.579 1.533 5.755 1.00 0.00 C ATOM 148 O VAL 40 -0.830 1.742 6.710 1.00 0.00 O ATOM 149 N SER 41 -2.347 0.452 5.662 1.00 0.00 N ATOM 150 CA SER 41 -2.373 -0.583 6.705 1.00 0.00 C ATOM 151 C SER 41 -2.121 -1.941 6.074 1.00 0.00 C ATOM 152 O SER 41 -2.948 -2.437 5.310 1.00 0.00 O ATOM 153 N LEU 42 -0.993 -2.558 6.419 1.00 0.00 N ATOM 154 CA LEU 42 -0.619 -3.882 5.901 1.00 0.00 C ATOM 155 C LEU 42 -0.772 -4.919 7.013 1.00 0.00 C ATOM 156 O LEU 42 -0.443 -4.672 8.173 1.00 0.00 O ATOM 157 N LEU 43 -1.269 -6.092 6.634 1.00 0.00 N ATOM 158 CA LEU 43 -1.470 -7.189 7.599 1.00 0.00 C ATOM 159 C LEU 43 -1.210 -8.541 6.919 1.00 0.00 C ATOM 160 O LEU 43 -1.739 -8.829 5.845 1.00 0.00 O ATOM 161 N VAL 44 -0.391 -9.365 7.565 1.00 0.00 N ATOM 162 CA VAL 44 -0.049 -10.691 7.017 1.00 0.00 C ATOM 163 C VAL 44 -1.129 -11.708 7.397 1.00 0.00 C ATOM 164 O VAL 44 -1.448 -11.872 8.574 1.00 0.00 O ATOM 165 N ASP 45 -1.682 -12.387 6.395 1.00 0.00 N ATOM 166 CA ASP 45 -2.725 -13.407 6.601 1.00 0.00 C ATOM 167 C ASP 45 -3.983 -13.061 5.819 1.00 0.00 C ATOM 168 O ASP 45 -3.951 -12.291 4.857 1.00 0.00 O ATOM 169 N GLY 46 -6.760 -10.712 10.550 1.00 0.00 N ATOM 170 CA GLY 46 -5.465 -10.093 10.244 1.00 0.00 C ATOM 171 C GLY 46 -5.048 -9.118 11.346 1.00 0.00 C ATOM 172 O GLY 46 -5.865 -8.730 12.182 1.00 0.00 O ATOM 173 N ILE 47 -3.780 -8.718 11.335 1.00 0.00 N ATOM 174 CA ILE 47 -3.233 -7.776 12.344 1.00 0.00 C ATOM 175 C ILE 47 -2.366 -6.706 11.668 1.00 0.00 C ATOM 176 O ILE 47 -1.626 -6.990 10.726 1.00 0.00 O ATOM 177 N VAL 48 -2.462 -5.479 12.168 1.00 0.00 N ATOM 178 CA VAL 48 -1.679 -4.367 11.608 1.00 0.00 C ATOM 179 C VAL 48 -0.201 -4.506 12.029 1.00 0.00 C ATOM 180 O VAL 48 0.104 -4.752 13.195 1.00 0.00 O ATOM 181 N VAL 49 0.699 -4.328 11.068 1.00 0.00 N ATOM 182 CA VAL 49 2.162 -4.434 11.332 1.00 0.00 C ATOM 183 C VAL 49 2.743 -3.042 11.517 1.00 0.00 C ATOM 184 O VAL 49 3.578 -2.814 12.394 1.00 0.00 O ATOM 185 N ASP 50 2.306 -2.115 10.672 1.00 0.00 N ATOM 186 CA ASP 50 2.790 -0.737 10.737 1.00 0.00 C ATOM 187 C ASP 50 2.127 0.116 9.667 1.00 0.00 C ATOM 188 O ASP 50 1.468 -0.395 8.763 1.00 0.00 O ATOM 189 N THR 51 2.311 1.428 9.775 1.00 0.00 N ATOM 190 CA THR 51 1.729 2.372 8.810 1.00 0.00 C ATOM 191 C THR 51 2.562 3.656 8.752 1.00 0.00 C ATOM 192 O THR 51 3.399 3.920 9.615 1.00 0.00 O ATOM 193 N GLN 52 2.306 4.458 7.723 1.00 0.00 N ATOM 194 CA GLN 52 3.023 5.732 7.539 1.00 0.00 C ATOM 195 C GLN 52 2.162 6.707 6.721 1.00 0.00 C ATOM 196 O GLN 52 1.897 6.469 5.542 1.00 0.00 O ATOM 197 N THR 53 1.755 7.804 7.348 1.00 0.00 N ATOM 198 CA THR 53 0.929 8.815 6.666 1.00 0.00 C ATOM 199 C THR 53 1.813 9.642 5.722 1.00 0.00 C ATOM 200 O THR 53 2.887 10.105 6.104 1.00 0.00 O ATOM 201 N VAL 54 1.341 9.822 4.492 1.00 0.00 N ATOM 202 CA VAL 54 2.084 10.591 3.479 1.00 0.00 C ATOM 203 C VAL 54 1.746 12.078 3.618 1.00 0.00 C ATOM 204 O VAL 54 0.631 12.443 3.991 1.00 0.00 O ATOM 205 N THR 55 2.715 12.928 3.295 1.00 0.00 N ATOM 206 CA THR 55 2.509 14.380 3.386 1.00 0.00 C ATOM 207 C THR 55 1.403 14.821 2.439 1.00 0.00 C ATOM 208 O THR 55 0.473 15.530 2.826 1.00 0.00 O ATOM 209 N SER 56 1.508 14.386 1.189 1.00 0.00 N ATOM 210 CA SER 56 0.512 14.726 0.163 1.00 0.00 C ATOM 211 C SER 56 0.840 14.011 -1.158 1.00 0.00 C ATOM 212 O SER 56 2.006 13.819 -1.505 1.00 0.00 O ATOM 213 N LEU 57 -0.203 13.648 -1.898 1.00 0.00 N ATOM 214 CA LEU 57 -0.023 12.943 -3.208 1.00 0.00 C ATOM 215 C LEU 57 -0.612 13.799 -4.379 1.00 0.00 C ATOM 216 O LEU 57 -1.795 14.132 -4.311 1.00 0.00 O ATOM 217 N GLU 58 0.146 14.122 -5.391 1.00 0.00 N ATOM 218 CA GLU 58 -0.415 14.953 -6.532 1.00 0.00 C ATOM 219 C GLU 58 -1.377 14.138 -7.423 1.00 0.00 C ATOM 220 O GLU 58 -1.398 12.906 -7.381 1.00 0.00 O ATOM 221 N SER 59 -2.172 14.847 -8.217 1.00 0.00 N ATOM 222 CA SER 59 -3.156 14.211 -9.123 1.00 0.00 C ATOM 223 C SER 59 -2.449 13.520 -10.292 1.00 0.00 C ATOM 224 O SER 59 -1.448 14.027 -10.798 1.00 0.00 O ATOM 225 N GLU 60 -2.969 12.370 -10.709 1.00 0.00 N ATOM 226 CA GLU 60 -2.384 11.621 -11.825 1.00 0.00 C ATOM 227 C GLU 60 -1.048 11.021 -11.423 1.00 0.00 C ATOM 228 O GLU 60 -0.339 10.441 -12.245 1.00 0.00 O ATOM 229 N ASN 61 -0.710 11.155 -10.143 1.00 0.00 N ATOM 230 CA ASN 61 0.549 10.633 -9.585 1.00 0.00 C ATOM 231 C ASN 61 0.281 9.425 -8.706 1.00 0.00 C ATOM 232 O ASN 61 -0.809 8.855 -8.724 1.00 0.00 O ATOM 233 N SER 62 1.290 9.034 -7.934 1.00 0.00 N ATOM 234 CA SER 62 1.169 7.880 -7.023 1.00 0.00 C ATOM 235 C SER 62 1.995 8.119 -5.761 1.00 0.00 C ATOM 236 O SER 62 3.009 8.814 -5.783 1.00 0.00 O ATOM 237 N THR 63 1.564 7.500 -4.665 1.00 0.00 N ATOM 238 CA THR 63 2.250 7.610 -3.373 1.00 0.00 C ATOM 239 C THR 63 3.115 6.391 -3.142 1.00 0.00 C ATOM 240 O THR 63 2.884 5.331 -3.724 1.00 0.00 O ATOM 241 N ASN 64 4.117 6.539 -2.281 1.00 0.00 N ATOM 242 CA ASN 64 5.030 5.417 -1.971 1.00 0.00 C ATOM 243 C ASN 64 5.409 5.438 -0.477 1.00 0.00 C ATOM 244 O ASN 64 6.085 6.349 0.002 1.00 0.00 O ATOM 245 N VAL 65 4.961 4.413 0.242 1.00 0.00 N ATOM 246 CA VAL 65 5.227 4.266 1.683 1.00 0.00 C ATOM 247 C VAL 65 6.357 3.261 1.906 1.00 0.00 C ATOM 248 O VAL 65 6.651 2.430 1.046 1.00 0.00 O ATOM 249 N ASP 66 6.979 3.341 3.077 1.00 0.00 N ATOM 250 CA ASP 66 8.096 2.424 3.430 1.00 0.00 C ATOM 251 C ASP 66 7.803 1.736 4.770 1.00 0.00 C ATOM 252 O ASP 66 7.616 2.392 5.794 1.00 0.00 O ATOM 253 N PHE 67 7.782 0.408 4.744 1.00 0.00 N ATOM 254 CA PHE 67 7.523 -0.397 5.955 1.00 0.00 C ATOM 255 C PHE 67 8.464 -1.603 5.980 1.00 0.00 C ATOM 256 O PHE 67 8.814 -2.176 4.949 1.00 0.00 O ATOM 257 N HIS 68 8.858 -1.989 7.190 1.00 0.00 N ATOM 258 CA HIS 68 9.771 -3.135 7.395 1.00 0.00 C ATOM 259 C HIS 68 9.088 -4.203 8.247 1.00 0.00 C ATOM 260 O HIS 68 8.356 -3.897 9.188 1.00 0.00 O ATOM 261 N TRP 69 9.346 -5.462 7.908 1.00 0.00 N ATOM 262 CA TRP 69 8.764 -6.604 8.626 1.00 0.00 C ATOM 263 C TRP 69 9.781 -7.753 8.683 1.00 0.00 C ATOM 264 O TRP 69 10.557 -7.984 7.756 1.00 0.00 O ATOM 265 N THR 70 9.747 -8.477 9.797 1.00 0.00 N ATOM 266 CA THR 70 10.660 -9.618 9.995 1.00 0.00 C ATOM 267 C THR 70 9.998 -10.901 9.490 1.00 0.00 C ATOM 268 O THR 70 8.934 -11.291 9.974 1.00 0.00 O ATOM 269 N LEU 71 10.641 -11.561 8.532 1.00 0.00 N ATOM 270 CA LEU 71 10.101 -12.802 7.976 1.00 0.00 C ATOM 271 C LEU 71 10.292 -13.938 8.979 1.00 0.00 C ATOM 272 O LEU 71 11.391 -14.113 9.509 1.00 0.00 O ATOM 285 N ALA 75 7.270 -25.452 -0.057 1.00 0.00 N ATOM 286 CA ALA 75 6.015 -24.665 -0.160 1.00 0.00 C ATOM 287 C ALA 75 6.095 -23.353 0.681 1.00 0.00 C ATOM 288 O ALA 75 6.458 -23.439 1.856 1.00 0.00 O ATOM 289 N ASN 76 5.768 -22.212 0.138 1.00 0.00 N ATOM 290 CA ASN 76 5.836 -20.938 0.950 1.00 0.00 C ATOM 291 C ASN 76 4.722 -20.869 2.019 1.00 0.00 C ATOM 292 O ASN 76 4.939 -21.193 3.187 1.00 0.00 O ATOM 293 N SER 77 3.542 -20.427 1.597 1.00 0.00 N ATOM 294 CA SER 77 2.392 -20.302 2.509 1.00 0.00 C ATOM 295 C SER 77 2.449 -18.985 3.265 1.00 0.00 C ATOM 296 O SER 77 1.702 -18.771 4.220 1.00 0.00 O ATOM 297 N TYR 78 3.331 -18.094 2.822 1.00 0.00 N ATOM 298 CA TYR 78 3.503 -16.760 3.440 1.00 0.00 C ATOM 299 C TYR 78 3.173 -15.667 2.398 1.00 0.00 C ATOM 300 O TYR 78 4.065 -14.901 2.035 1.00 0.00 O ATOM 301 N THR 79 1.952 -15.574 1.946 1.00 0.00 N ATOM 302 CA THR 79 1.551 -14.524 0.949 1.00 0.00 C ATOM 303 C THR 79 1.578 -13.127 1.570 1.00 0.00 C ATOM 304 O THR 79 1.808 -12.953 2.767 1.00 0.00 O ATOM 305 N LEU 80 1.327 -12.132 0.728 1.00 0.00 N ATOM 306 CA LEU 80 1.316 -10.716 1.174 1.00 0.00 C ATOM 307 C LEU 80 0.049 -10.019 0.665 1.00 0.00 C ATOM 308 O LEU 80 -0.339 -10.164 -0.495 1.00 0.00 O ATOM 309 N THR 81 -0.581 -9.252 1.548 1.00 0.00 N ATOM 310 CA THR 81 -1.812 -8.507 1.213 1.00 0.00 C ATOM 311 C THR 81 -1.717 -7.081 1.756 1.00 0.00 C ATOM 312 O THR 81 -1.136 -6.825 2.811 1.00 0.00 O ATOM 313 N VAL 82 -2.322 -6.156 1.019 1.00 0.00 N ATOM 314 CA VAL 82 -2.315 -4.735 1.405 1.00 0.00 C ATOM 315 C VAL 82 -3.619 -4.075 0.977 1.00 0.00 C ATOM 316 O VAL 82 -4.167 -4.379 -0.083 1.00 0.00 O ATOM 317 N ASN 83 -4.108 -3.164 1.810 1.00 0.00 N ATOM 318 CA ASN 83 -5.366 -2.445 1.537 1.00 0.00 C ATOM 319 C ASN 83 -5.186 -0.956 1.838 1.00 0.00 C ATOM 320 O ASN 83 -4.557 -0.568 2.823 1.00 0.00 O ATOM 321 N VAL 84 -5.768 -0.127 0.977 1.00 0.00 N ATOM 322 CA VAL 84 -5.697 1.332 1.128 1.00 0.00 C ATOM 323 C VAL 84 -6.932 1.820 1.886 1.00 0.00 C ATOM 324 O VAL 84 -8.045 1.349 1.652 1.00 0.00 O ATOM 325 N ASP 85 -6.729 2.790 2.773 1.00 0.00 N ATOM 326 CA ASP 85 -7.826 3.367 3.578 1.00 0.00 C ATOM 327 C ASP 85 -9.123 3.564 2.732 1.00 0.00 C ATOM 328 O ASP 85 -9.002 3.829 1.537 1.00 0.00 O ATOM 329 N PRO 86 -10.291 3.422 3.297 1.00 0.00 N ATOM 330 CA PRO 86 -11.560 3.578 2.496 1.00 0.00 C ATOM 331 C PRO 86 -11.817 5.037 2.091 1.00 0.00 C ATOM 332 O PRO 86 -12.149 5.873 2.933 1.00 0.00 O ATOM 333 N GLU 87 -11.674 5.328 0.802 1.00 0.00 N ATOM 334 CA GLU 87 -11.893 6.680 0.265 1.00 0.00 C ATOM 335 C GLU 87 -13.380 6.888 -0.041 1.00 0.00 C ATOM 336 O GLU 87 -13.762 7.894 -0.637 1.00 0.00 O ATOM 337 N ASN 88 -14.208 5.938 0.381 1.00 0.00 N ATOM 338 CA ASN 88 -15.665 6.009 0.145 1.00 0.00 C ATOM 339 C ASN 88 -16.432 5.299 1.276 1.00 0.00 C ATOM 340 O ASN 88 -17.316 4.480 1.024 1.00 0.00 O ATOM 341 N ALA 89 -16.089 5.636 2.514 1.00 0.00 N ATOM 342 CA ALA 89 -16.745 5.039 3.698 1.00 0.00 C ATOM 343 C ALA 89 -16.714 3.494 3.632 1.00 0.00 C ATOM 344 O ALA 89 -15.790 2.865 4.146 1.00 0.00 O ATOM 345 N VAL 90 -17.718 2.908 2.986 1.00 0.00 N ATOM 346 CA VAL 90 -17.805 1.435 2.837 1.00 0.00 C ATOM 347 C VAL 90 -18.102 1.075 1.373 1.00 0.00 C ATOM 348 O VAL 90 -19.078 1.531 0.778 1.00 0.00 O ATOM 349 N ASN 91 -17.243 0.231 0.811 1.00 0.00 N ATOM 350 CA ASN 91 -17.399 -0.204 -0.583 1.00 0.00 C ATOM 351 C ASN 91 -16.413 -1.337 -0.894 1.00 0.00 C ATOM 352 O ASN 91 -15.234 -1.097 -1.154 1.00 0.00 O ATOM 353 N GLU 92 -16.914 -2.568 -0.875 1.00 0.00 N ATOM 354 CA GLU 92 -16.054 -3.732 -1.154 1.00 0.00 C ATOM 355 C GLU 92 -15.663 -3.747 -2.633 1.00 0.00 C ATOM 356 O GLU 92 -14.485 -3.685 -2.980 1.00 0.00 O ATOM 357 N GLY 93 -16.668 -3.838 -3.499 1.00 0.00 N ATOM 358 CA GLY 93 -16.420 -3.869 -4.962 1.00 0.00 C ATOM 359 C GLY 93 -15.381 -2.802 -5.383 1.00 0.00 C ATOM 360 O GLY 93 -14.432 -3.117 -6.101 1.00 0.00 O ATOM 361 N ASN 94 -15.552 -1.573 -4.904 1.00 0.00 N ATOM 362 CA ASN 94 -14.596 -0.492 -5.224 1.00 0.00 C ATOM 363 C ASN 94 -13.194 -0.838 -4.688 1.00 0.00 C ATOM 364 O ASN 94 -12.295 -1.164 -5.464 1.00 0.00 O ATOM 365 N GLU 95 -13.025 -0.773 -3.372 1.00 0.00 N ATOM 366 CA GLU 95 -11.705 -1.099 -2.744 1.00 0.00 C ATOM 367 C GLU 95 -11.073 -2.362 -3.388 1.00 0.00 C ATOM 368 O GLU 95 -9.889 -2.376 -3.725 1.00 0.00 O ATOM 369 N SER 96 -11.889 -3.396 -3.567 1.00 0.00 N ATOM 370 CA SER 96 -11.421 -4.653 -4.209 1.00 0.00 C ATOM 371 C SER 96 -10.725 -4.378 -5.575 1.00 0.00 C ATOM 372 O SER 96 -10.143 -5.271 -6.191 1.00 0.00 O ATOM 373 N ASN 97 -10.785 -3.122 -6.003 1.00 0.00 N ATOM 374 CA ASN 97 -10.140 -2.713 -7.273 1.00 0.00 C ATOM 375 C ASN 97 -8.663 -2.402 -7.032 1.00 0.00 C ATOM 376 O ASN 97 -7.822 -2.714 -7.875 1.00 0.00 O ATOM 377 N ASN 98 -8.355 -1.785 -5.896 1.00 0.00 N ATOM 378 CA ASN 98 -6.979 -1.410 -5.524 1.00 0.00 C ATOM 379 C ASN 98 -6.356 -2.492 -4.634 1.00 0.00 C ATOM 380 O ASN 98 -5.732 -2.198 -3.615 1.00 0.00 O ATOM 381 N THR 99 -6.514 -3.745 -5.049 1.00 0.00 N ATOM 382 CA THR 99 -5.966 -4.901 -4.299 1.00 0.00 C ATOM 383 C THR 99 -4.747 -5.447 -5.030 1.00 0.00 C ATOM 384 O THR 99 -4.739 -5.551 -6.256 1.00 0.00 O ATOM 385 N LEU 100 -3.720 -5.804 -4.265 1.00 0.00 N ATOM 386 CA LEU 100 -2.481 -6.342 -4.842 1.00 0.00 C ATOM 387 C LEU 100 -1.882 -7.397 -3.911 1.00 0.00 C ATOM 388 O LEU 100 -1.927 -7.265 -2.687 1.00 0.00 O ATOM 389 N THR 101 -1.308 -8.436 -4.508 1.00 0.00 N ATOM 390 CA THR 101 -0.699 -9.520 -3.738 1.00 0.00 C ATOM 391 C THR 101 0.078 -10.444 -4.670 1.00 0.00 C ATOM 392 O THR 101 -0.334 -10.708 -5.800 1.00 0.00 O ATOM 393 N ALA 102 1.208 -10.944 -4.178 1.00 0.00 N ATOM 394 CA ALA 102 2.058 -11.854 -4.962 1.00 0.00 C ATOM 395 C ALA 102 2.677 -12.913 -4.052 1.00 0.00 C ATOM 396 O ALA 102 2.988 -12.656 -2.888 1.00 0.00 O ATOM 397 N LEU 103 2.870 -14.105 -4.607 1.00 0.00 N ATOM 398 CA LEU 103 3.469 -15.220 -3.861 1.00 0.00 C ATOM 399 C LEU 103 4.984 -15.215 -4.097 1.00 0.00 C ATOM 400 O LEU 103 5.464 -14.913 -5.191 1.00 0.00 O ATOM 401 N VAL 104 5.726 -15.582 -3.059 1.00 0.00 N ATOM 402 CA VAL 104 7.205 -15.633 -3.138 1.00 0.00 C ATOM 403 C VAL 104 7.722 -16.898 -2.449 1.00 0.00 C ATOM 404 O VAL 104 7.223 -17.302 -1.398 1.00 0.00 O ATOM 405 N GLY 105 8.731 -17.515 -3.055 1.00 0.00 N ATOM 406 CA GLY 105 9.338 -18.754 -2.526 1.00 0.00 C ATOM 407 C GLY 105 10.735 -18.459 -1.991 1.00 0.00 C ATOM 408 O GLY 105 11.470 -17.645 -2.548 1.00 0.00 O ATOM 409 N THR 106 11.096 -19.138 -0.907 1.00 0.00 N ATOM 410 CA THR 106 12.408 -18.965 -0.256 1.00 0.00 C ATOM 411 C THR 106 13.267 -20.210 -0.480 1.00 0.00 C ATOM 412 O THR 106 12.799 -21.340 -0.344 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 396 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 50.40 61.3 186 93.5 199 ARMSMC SECONDARY STRUCTURE . . 46.98 63.4 101 92.7 109 ARMSMC SURFACE . . . . . . . . 45.92 62.4 117 93.6 125 ARMSMC BURIED . . . . . . . . 57.21 59.4 69 93.2 74 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 86 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 1 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 0 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 5.03 (Number of atoms: 99) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 5.03 99 97.1 102 CRMSCA CRN = ALL/NP . . . . . 0.0508 CRMSCA SECONDARY STRUCTURE . . 3.57 55 98.2 56 CRMSCA SURFACE . . . . . . . . 4.20 63 96.9 65 CRMSCA BURIED . . . . . . . . 6.23 36 97.3 37 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.92 396 78.3 506 CRMSMC SECONDARY STRUCTURE . . 3.57 220 78.9 279 CRMSMC SURFACE . . . . . . . . 4.18 252 78.3 322 CRMSMC BURIED . . . . . . . . 6.00 144 78.3 184 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1090 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1006 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 638 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 655 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 435 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.92 396 26.4 1498 CRMSALL SECONDARY STRUCTURE . . 3.57 220 25.5 862 CRMSALL SURFACE . . . . . . . . 4.18 252 27.5 915 CRMSALL BURIED . . . . . . . . 6.00 144 24.7 583 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.861 1.000 0.500 99 97.1 102 ERRCA SECONDARY STRUCTURE . . 2.849 1.000 0.500 55 98.2 56 ERRCA SURFACE . . . . . . . . 3.687 1.000 0.500 63 96.9 65 ERRCA BURIED . . . . . . . . 4.164 1.000 0.500 36 97.3 37 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.796 1.000 0.500 396 78.3 506 ERRMC SECONDARY STRUCTURE . . 2.838 1.000 0.500 220 78.9 279 ERRMC SURFACE . . . . . . . . 3.647 1.000 0.500 252 78.3 322 ERRMC BURIED . . . . . . . . 4.056 1.000 0.500 144 78.3 184 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1090 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1006 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 638 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 655 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 435 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.796 1.000 0.500 396 26.4 1498 ERRALL SECONDARY STRUCTURE . . 2.838 1.000 0.500 220 25.5 862 ERRALL SURFACE . . . . . . . . 3.647 1.000 0.500 252 27.5 915 ERRALL BURIED . . . . . . . . 4.056 1.000 0.500 144 24.7 583 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 4 28 54 77 95 99 102 DISTCA CA (P) 3.92 27.45 52.94 75.49 93.14 102 DISTCA CA (RMS) 0.64 1.56 2.17 2.69 3.95 DISTCA ALL (N) 18 106 214 308 382 396 1498 DISTALL ALL (P) 1.20 7.08 14.29 20.56 25.50 1498 DISTALL ALL (RMS) 0.75 1.49 2.11 2.67 3.96 DISTALL END of the results output