####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 99 ( 396), selected 99 , name T0541AL285_1-D1 # Molecule2: number of CA atoms 102 ( 1498), selected 99 , name T0541-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0541AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 99 2 - 105 2.35 2.35 LCS_AVERAGE: 97.06 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 79 23 - 105 1.99 2.45 LCS_AVERAGE: 66.93 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 19 38 - 57 0.93 2.96 LCS_AVERAGE: 12.00 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 99 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT I 2 I 2 6 10 99 3 22 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 3 P 3 6 10 99 6 21 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 4 D 4 6 10 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 5 L 5 6 14 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 6 V 6 6 19 99 8 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 7 P 7 6 19 99 7 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 8 V 8 6 19 99 3 10 22 47 68 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 9 S 9 6 19 99 3 10 15 28 60 80 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 10 L 10 4 19 99 3 4 5 35 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 11 T 11 7 19 99 5 17 32 54 71 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 12 P 12 7 19 99 5 17 29 44 61 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 13 V 13 7 19 99 5 17 29 43 60 80 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 14 T 14 7 19 99 5 17 29 43 60 80 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 15 V 15 7 19 99 5 15 28 40 60 80 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 16 V 16 7 19 99 3 15 28 38 51 70 86 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 17 P 17 7 19 99 3 15 28 38 60 80 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 19 T 19 8 52 99 2 5 19 38 62 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 20 V 20 9 52 99 3 11 28 41 58 75 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 21 N 21 9 64 99 3 14 28 46 68 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 22 T 22 9 78 99 4 14 28 43 62 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT M 23 M 23 14 79 99 6 19 43 63 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 24 T 24 14 79 99 6 24 51 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 25 A 25 14 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 26 T 26 14 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 27 I 27 14 79 99 8 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 28 E 28 14 79 99 8 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 29 N 29 14 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 30 Q 30 14 79 99 11 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 31 G 31 14 79 99 11 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 32 N 32 14 79 99 3 26 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT K 33 K 33 14 79 99 5 37 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 34 D 34 14 79 99 7 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 35 S 35 14 79 99 6 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 36 T 36 14 79 99 5 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 37 S 37 18 79 99 3 5 33 54 70 80 85 92 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT F 38 F 38 19 79 99 7 24 49 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 39 N 39 19 79 99 7 28 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 40 V 40 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 41 S 41 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 42 L 42 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 43 L 43 19 79 99 8 37 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 44 V 44 19 79 99 7 36 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 45 D 45 19 79 99 5 27 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 46 G 46 19 79 99 11 36 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT I 47 I 47 19 79 99 9 37 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 48 V 48 19 79 99 8 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 49 V 49 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 50 D 50 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 51 T 51 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Q 52 Q 52 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 53 T 53 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 54 V 54 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 55 T 55 19 79 99 3 18 36 51 66 81 87 93 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 57 L 57 19 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 58 E 58 8 79 99 4 37 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 59 S 59 9 79 99 3 24 53 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 60 E 60 11 79 99 7 36 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 61 N 61 11 79 99 8 36 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 62 S 62 11 79 99 8 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 63 T 63 11 79 99 7 37 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 64 N 64 11 79 99 8 35 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 65 V 65 11 79 99 8 19 46 63 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 66 D 66 11 79 99 8 19 45 63 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT F 67 F 67 11 79 99 3 15 28 56 70 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT H 68 H 68 11 79 99 4 14 28 38 57 75 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT W 69 W 69 11 79 99 5 19 39 58 71 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 70 T 70 11 79 99 6 18 31 59 71 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 71 L 71 11 79 99 4 15 39 63 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 75 A 75 3 79 99 0 0 4 7 40 66 87 93 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 76 N 76 9 79 99 4 15 29 51 68 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 77 S 77 9 79 99 5 18 33 55 71 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT Y 78 Y 78 10 79 99 5 19 42 63 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 79 T 79 11 79 99 5 29 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 80 L 80 11 79 99 7 30 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 81 T 81 11 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 82 V 82 11 79 99 11 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 83 N 83 11 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 84 V 84 11 79 99 8 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT D 85 D 85 13 79 99 6 21 53 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT P 86 P 86 13 79 99 6 32 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 87 E 87 13 79 99 6 35 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 88 N 88 13 79 99 6 22 53 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 89 A 89 13 79 99 8 22 49 64 72 81 87 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 90 V 90 13 79 99 6 14 34 57 70 81 86 93 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 91 N 91 13 79 99 4 14 34 57 70 81 87 93 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 92 E 92 13 79 99 3 9 26 56 70 81 87 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 93 G 93 13 79 99 3 9 36 60 72 81 89 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 94 N 94 13 79 99 11 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT E 95 E 95 13 79 99 11 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT S 96 S 96 13 79 99 10 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 97 N 97 13 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT N 98 N 98 11 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 99 T 99 11 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 100 L 100 11 79 99 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT T 101 T 101 11 79 99 9 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT A 102 A 102 11 79 99 7 28 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT L 103 L 103 11 79 99 4 27 52 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT V 104 V 104 11 79 99 5 17 33 55 71 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_GDT G 105 G 105 9 79 99 5 17 31 51 70 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 LCS_AVERAGE LCS_A: 58.67 ( 12.00 66.93 97.06 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 13 38 54 64 72 81 90 94 98 99 99 99 99 99 99 99 99 99 99 99 GDT PERCENT_AT 12.75 37.25 52.94 62.75 70.59 79.41 88.24 92.16 96.08 97.06 97.06 97.06 97.06 97.06 97.06 97.06 97.06 97.06 97.06 97.06 GDT RMS_LOCAL 0.33 0.77 0.94 1.13 1.40 1.75 2.10 2.20 2.31 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 GDT RMS_ALL_AT 2.82 2.86 2.77 2.80 2.57 2.50 2.38 2.36 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 2.35 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA I 2 I 2 2.388 4 0.053 0.053 2.459 64.762 32.381 LGA P 3 P 3 2.370 3 0.221 0.221 3.171 61.071 34.898 LGA D 4 D 4 1.079 4 0.019 0.019 1.283 81.429 40.714 LGA L 5 L 5 1.095 4 0.172 0.172 1.542 81.548 40.774 LGA V 6 V 6 0.982 3 0.176 0.176 2.230 81.786 46.735 LGA P 7 P 7 1.193 3 0.165 0.165 1.431 83.690 47.823 LGA V 8 V 8 2.782 3 0.564 0.564 5.362 47.857 27.347 LGA S 9 S 9 3.439 2 0.107 0.107 3.439 57.500 38.333 LGA L 10 L 10 2.506 4 0.135 0.135 3.268 61.190 30.595 LGA T 11 T 11 2.202 3 0.180 0.180 5.561 50.238 28.707 LGA P 12 P 12 3.292 3 0.123 0.123 3.292 53.571 30.612 LGA V 13 V 13 3.345 3 0.029 0.029 3.404 50.000 28.571 LGA T 14 T 14 3.453 3 0.028 0.028 3.706 46.667 26.667 LGA V 15 V 15 3.648 3 0.091 0.091 3.774 45.000 25.714 LGA V 16 V 16 4.529 3 0.137 0.137 4.529 35.714 20.408 LGA P 17 P 17 3.897 3 0.392 0.392 4.171 48.810 27.891 LGA T 19 T 19 4.052 3 0.118 0.118 4.052 45.238 25.850 LGA V 20 V 20 4.198 3 0.120 0.120 5.671 33.214 18.980 LGA N 21 N 21 3.031 4 0.141 0.141 3.213 53.571 26.786 LGA T 22 T 22 3.518 3 0.174 0.174 3.799 45.000 25.714 LGA M 23 M 23 1.465 4 0.022 0.022 2.033 77.262 38.631 LGA T 24 T 24 0.717 3 0.075 0.075 0.963 92.857 53.061 LGA A 25 A 25 0.961 1 0.040 0.040 1.065 88.214 70.571 LGA T 26 T 26 1.117 3 0.041 0.041 1.545 79.286 45.306 LGA I 27 I 27 1.626 4 0.020 0.020 1.759 75.000 37.500 LGA E 28 E 28 2.080 5 0.099 0.099 2.080 68.810 30.582 LGA N 29 N 29 1.409 4 0.222 0.222 1.585 81.548 40.774 LGA Q 30 Q 30 1.818 5 0.248 0.248 2.546 68.929 30.635 LGA G 31 G 31 1.671 0 0.675 0.675 3.821 65.476 65.476 LGA N 32 N 32 1.089 4 0.264 0.264 1.982 79.286 39.643 LGA K 33 K 33 1.204 5 0.083 0.083 1.413 81.429 36.190 LGA D 34 D 34 2.180 4 0.065 0.065 2.230 66.786 33.393 LGA S 35 S 35 2.093 2 0.139 0.139 2.153 66.786 44.524 LGA T 36 T 36 1.696 3 0.667 0.667 3.567 61.548 35.170 LGA S 37 S 37 4.841 2 0.575 0.575 4.841 43.690 29.127 LGA F 38 F 38 2.247 7 0.235 0.235 2.889 62.857 22.857 LGA N 39 N 39 1.939 4 0.090 0.090 2.009 70.833 35.417 LGA V 40 V 40 1.098 3 0.028 0.028 1.349 81.429 46.531 LGA S 41 S 41 0.974 2 0.023 0.023 0.976 90.476 60.317 LGA L 42 L 42 0.771 4 0.072 0.072 1.205 88.214 44.107 LGA L 43 L 43 1.193 4 0.119 0.119 1.591 81.548 40.774 LGA V 44 V 44 1.248 3 0.022 0.022 1.585 79.286 45.306 LGA D 45 D 45 1.703 4 0.080 0.080 2.174 70.833 35.417 LGA G 46 G 46 1.246 0 0.157 0.157 1.481 81.429 81.429 LGA I 47 I 47 1.425 4 0.090 0.090 1.606 79.286 39.643 LGA V 48 V 48 1.036 3 0.063 0.063 1.346 81.429 46.531 LGA V 49 V 49 1.500 3 0.074 0.074 1.500 79.286 45.306 LGA D 50 D 50 1.341 4 0.076 0.076 1.341 81.429 40.714 LGA T 51 T 51 1.239 3 0.114 0.114 1.359 81.429 46.531 LGA Q 52 Q 52 1.991 5 0.165 0.165 2.682 66.905 29.735 LGA T 53 T 53 2.014 3 0.060 0.060 2.521 64.881 37.075 LGA V 54 V 54 2.389 3 0.125 0.125 2.617 62.857 35.918 LGA T 55 T 55 4.265 3 0.608 0.608 4.265 43.452 24.830 LGA L 57 L 57 1.889 4 0.036 0.036 2.245 68.810 34.405 LGA E 58 E 58 2.867 5 0.126 0.126 3.045 55.357 24.603 LGA S 59 S 59 2.757 2 0.135 0.135 2.757 60.952 40.635 LGA E 60 E 60 2.511 5 0.118 0.118 2.764 57.143 25.397 LGA N 61 N 61 2.820 4 0.038 0.038 2.820 62.976 31.488 LGA S 62 S 62 2.129 2 0.042 0.042 2.415 68.810 45.873 LGA T 63 T 63 1.590 3 0.031 0.031 1.790 75.000 42.857 LGA N 64 N 64 1.245 4 0.025 0.025 1.633 79.286 39.643 LGA V 65 V 65 1.771 3 0.113 0.113 1.913 75.000 42.857 LGA D 66 D 66 1.634 4 0.142 0.142 1.890 72.857 36.429 LGA F 67 F 67 2.676 7 0.014 0.014 2.746 60.952 22.165 LGA H 68 H 68 4.130 6 0.108 0.108 4.130 41.786 16.714 LGA W 69 W 69 2.505 10 0.090 0.090 3.018 59.167 16.905 LGA T 70 T 70 2.435 3 0.078 0.078 2.435 68.810 39.320 LGA L 71 L 71 1.572 4 0.109 0.109 2.274 70.833 35.417 LGA A 75 A 75 4.268 1 0.127 0.127 4.384 41.905 33.524 LGA N 76 N 76 3.363 4 0.652 0.652 3.691 50.119 25.060 LGA S 77 S 77 2.249 2 0.031 0.031 2.509 66.905 44.603 LGA Y 78 Y 78 1.540 8 0.024 0.024 1.847 75.000 25.000 LGA T 79 T 79 1.188 3 0.170 0.170 1.576 79.286 45.306 LGA L 80 L 80 0.929 4 0.015 0.015 1.030 88.214 44.107 LGA T 81 T 81 0.877 3 0.163 0.163 1.381 88.214 50.408 LGA V 82 V 82 0.278 3 0.133 0.133 0.405 100.000 57.143 LGA N 83 N 83 0.750 4 0.134 0.134 0.859 90.476 45.238 LGA V 84 V 84 1.057 3 0.151 0.151 1.333 83.690 47.823 LGA D 85 D 85 2.563 4 0.179 0.179 2.563 62.857 31.429 LGA P 86 P 86 1.445 3 0.089 0.089 1.867 79.286 45.306 LGA E 87 E 87 1.471 5 0.019 0.019 1.762 75.000 33.333 LGA N 88 N 88 2.614 4 0.067 0.067 3.202 57.262 28.631 LGA A 89 A 89 3.642 1 0.018 0.018 4.426 41.905 33.524 LGA V 90 V 90 4.449 3 0.172 0.172 4.449 37.143 21.224 LGA N 91 N 91 4.224 4 0.032 0.032 4.301 40.238 20.119 LGA E 92 E 92 3.754 5 0.029 0.029 3.965 45.000 20.000 LGA G 93 G 93 3.125 0 0.292 0.292 3.979 50.119 50.119 LGA N 94 N 94 1.442 4 0.106 0.106 1.528 79.286 39.643 LGA E 95 E 95 1.307 5 0.115 0.115 1.358 81.429 36.190 LGA S 96 S 96 1.282 2 0.044 0.044 1.294 83.690 55.794 LGA N 97 N 97 0.878 4 0.073 0.073 1.022 88.214 44.107 LGA N 98 N 98 0.632 4 0.043 0.043 0.738 90.476 45.238 LGA T 99 T 99 0.802 3 0.076 0.076 0.921 90.476 51.701 LGA L 100 L 100 0.833 4 0.154 0.154 0.833 92.857 46.429 LGA T 101 T 101 1.736 3 0.055 0.055 2.503 68.929 39.388 LGA A 102 A 102 2.041 1 0.060 0.060 2.041 72.976 58.381 LGA L 103 L 103 1.040 4 0.047 0.047 1.966 77.143 38.571 LGA V 104 V 104 2.214 3 0.036 0.036 2.299 66.786 38.163 LGA G 105 G 105 2.779 0 0.227 0.227 3.430 53.571 53.571 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 99 396 396 100.00 738 396 53.66 102 SUMMARY(RMSD_GDC): 2.347 2.346 2.346 66.165 36.846 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 99 102 4.0 94 2.20 72.304 75.475 4.085 LGA_LOCAL RMSD: 2.201 Number of atoms: 94 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.363 Number of assigned atoms: 99 Std_ASGN_ATOMS RMSD: 2.347 Standard rmsd on all 99 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.140672 * X + -0.969952 * Y + -0.198508 * Z + 0.131087 Y_new = -0.901055 * X + 0.042344 * Y + 0.431632 * Z + -1.584586 Z_new = -0.410256 * X + 0.239585 * Y + -0.879937 * Z + 0.468508 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -1.725666 0.422735 2.875761 [DEG: -98.8734 24.2209 164.7690 ] ZXZ: -2.710536 2.646525 -1.042233 [DEG: -155.3023 151.6347 -59.7156 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0541AL285_1-D1 REMARK 2: T0541-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0541AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 99 102 4.0 94 2.20 75.475 2.35 REMARK ---------------------------------------------------------- MOLECULE T0541AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kl6A ATOM 1 N ILE 2 -15.032 12.638 -7.879 1.00 0.00 N ATOM 2 CA ILE 2 -14.830 11.453 -7.046 1.00 0.00 C ATOM 3 C ILE 2 -13.404 10.910 -7.231 1.00 0.00 C ATOM 4 O ILE 2 -12.948 10.718 -8.360 1.00 0.00 O ATOM 5 N PRO 3 -12.673 10.685 -6.124 1.00 0.00 N ATOM 6 CA PRO 3 -11.295 10.181 -6.177 1.00 0.00 C ATOM 7 C PRO 3 -11.206 8.681 -6.505 1.00 0.00 C ATOM 8 O PRO 3 -12.223 7.997 -6.650 1.00 0.00 O ATOM 9 N ASP 4 -9.977 8.194 -6.663 1.00 0.00 N ATOM 10 CA ASP 4 -9.733 6.790 -6.988 1.00 0.00 C ATOM 11 C ASP 4 -8.343 6.360 -6.479 1.00 0.00 C ATOM 12 O ASP 4 -7.360 6.378 -7.224 1.00 0.00 O ATOM 13 N LEU 5 -8.257 6.035 -5.192 1.00 0.00 N ATOM 14 CA LEU 5 -6.984 5.649 -4.570 1.00 0.00 C ATOM 15 C LEU 5 -6.640 4.179 -4.839 1.00 0.00 C ATOM 16 O LEU 5 -7.519 3.318 -4.903 1.00 0.00 O ATOM 17 N VAL 6 -5.350 3.896 -4.994 1.00 0.00 N ATOM 18 CA VAL 6 -4.882 2.520 -5.181 1.00 0.00 C ATOM 19 C VAL 6 -3.486 2.312 -4.589 1.00 0.00 C ATOM 20 O VAL 6 -2.715 3.262 -4.425 1.00 0.00 O ATOM 21 N PRO 7 -3.173 1.061 -4.264 1.00 0.00 N ATOM 22 CA PRO 7 -1.868 0.701 -3.705 1.00 0.00 C ATOM 23 C PRO 7 -1.208 -0.414 -4.532 1.00 0.00 C ATOM 24 O PRO 7 -1.890 -1.273 -5.097 1.00 0.00 O ATOM 25 N VAL 8 0.121 -0.402 -4.602 1.00 0.00 N ATOM 26 CA VAL 8 0.865 -1.404 -5.378 1.00 0.00 C ATOM 27 C VAL 8 2.062 -1.955 -4.591 1.00 0.00 C ATOM 28 O VAL 8 2.981 -1.215 -4.240 1.00 0.00 O ATOM 29 N SER 9 2.045 -3.258 -4.323 1.00 0.00 N ATOM 30 CA SER 9 3.153 -3.926 -3.625 1.00 0.00 C ATOM 31 C SER 9 4.142 -4.533 -4.630 1.00 0.00 C ATOM 32 O SER 9 3.739 -5.218 -5.572 1.00 0.00 O ATOM 33 N LEU 10 5.433 -4.281 -4.436 1.00 0.00 N ATOM 34 CA LEU 10 6.460 -4.805 -5.340 1.00 0.00 C ATOM 35 C LEU 10 7.728 -5.225 -4.572 1.00 0.00 C ATOM 36 O LEU 10 8.158 -4.535 -3.648 1.00 0.00 O ATOM 37 N THR 11 8.315 -6.359 -4.957 1.00 0.00 N ATOM 38 CA THR 11 9.521 -6.850 -4.287 1.00 0.00 C ATOM 39 C THR 11 9.758 -8.352 -4.478 1.00 0.00 C ATOM 40 O THR 11 9.188 -8.964 -5.386 1.00 0.00 O ATOM 41 N PRO 12 10.607 -8.973 -3.632 1.00 0.00 N ATOM 42 CA PRO 12 10.927 -10.412 -3.730 1.00 0.00 C ATOM 43 C PRO 12 9.760 -11.323 -3.306 1.00 0.00 C ATOM 44 O PRO 12 9.247 -11.219 -2.191 1.00 0.00 O ATOM 45 N VAL 13 9.361 -12.229 -4.196 1.00 0.00 N ATOM 46 CA VAL 13 8.241 -13.143 -3.940 1.00 0.00 C ATOM 47 C VAL 13 8.688 -14.410 -3.181 1.00 0.00 C ATOM 48 O VAL 13 7.861 -15.149 -2.644 1.00 0.00 O ATOM 49 N THR 14 9.994 -14.663 -3.157 1.00 0.00 N ATOM 50 CA THR 14 10.566 -15.782 -2.392 1.00 0.00 C ATOM 51 C THR 14 11.780 -15.313 -1.576 1.00 0.00 C ATOM 52 O THR 14 12.713 -14.720 -2.120 1.00 0.00 O ATOM 53 N VAL 15 11.763 -15.580 -0.271 1.00 0.00 N ATOM 54 CA VAL 15 12.832 -15.132 0.632 1.00 0.00 C ATOM 55 C VAL 15 13.295 -16.261 1.567 1.00 0.00 C ATOM 56 O VAL 15 12.613 -17.276 1.725 1.00 0.00 O ATOM 57 N VAL 16 14.465 -16.081 2.177 1.00 0.00 N ATOM 58 CA VAL 16 14.992 -17.074 3.109 1.00 0.00 C ATOM 59 C VAL 16 14.558 -16.828 4.553 1.00 0.00 C ATOM 60 O VAL 16 14.206 -15.707 4.926 1.00 0.00 O ATOM 61 N PRO 17 14.584 -17.877 5.367 1.00 0.00 N ATOM 62 CA PRO 17 14.186 -17.777 6.772 1.00 0.00 C ATOM 63 C PRO 17 15.238 -17.015 7.602 1.00 0.00 C ATOM 64 O PRO 17 16.444 -17.178 7.403 1.00 0.00 O ATOM 69 N THR 19 16.009 -14.067 7.297 1.00 0.00 N ATOM 70 CA THR 19 16.684 -13.124 6.397 1.00 0.00 C ATOM 71 C THR 19 15.858 -11.842 6.219 1.00 0.00 C ATOM 72 O THR 19 14.642 -11.852 6.394 1.00 0.00 O ATOM 73 N VAL 20 16.522 -10.744 5.870 1.00 0.00 N ATOM 74 CA VAL 20 15.842 -9.457 5.670 1.00 0.00 C ATOM 75 C VAL 20 15.394 -9.274 4.209 1.00 0.00 C ATOM 76 O VAL 20 16.114 -9.635 3.277 1.00 0.00 O ATOM 77 N ASN 21 14.198 -8.719 4.014 1.00 0.00 N ATOM 78 CA ASN 21 13.676 -8.439 2.669 1.00 0.00 C ATOM 79 C ASN 21 13.120 -7.008 2.564 1.00 0.00 C ATOM 80 O ASN 21 12.526 -6.490 3.510 1.00 0.00 O ATOM 81 N THR 22 13.312 -6.377 1.407 1.00 0.00 N ATOM 82 CA THR 22 12.830 -5.009 1.170 1.00 0.00 C ATOM 83 C THR 22 11.690 -4.980 0.143 1.00 0.00 C ATOM 84 O THR 22 11.827 -5.481 -0.974 1.00 0.00 O ATOM 85 N MET 23 10.571 -4.374 0.527 1.00 0.00 N ATOM 86 CA MET 23 9.409 -4.250 -0.360 1.00 0.00 C ATOM 87 C MET 23 9.032 -2.777 -0.557 1.00 0.00 C ATOM 88 O MET 23 9.239 -1.944 0.329 1.00 0.00 O ATOM 89 N THR 24 8.468 -2.468 -1.720 1.00 0.00 N ATOM 90 CA THR 24 8.114 -1.093 -2.079 1.00 0.00 C ATOM 91 C THR 24 6.616 -0.963 -2.386 1.00 0.00 C ATOM 92 O THR 24 6.063 -1.720 -3.190 1.00 0.00 O ATOM 93 N ALA 25 5.964 -0.003 -1.736 1.00 0.00 N ATOM 94 CA ALA 25 4.540 0.260 -1.951 1.00 0.00 C ATOM 95 C ALA 25 4.328 1.567 -2.732 1.00 0.00 C ATOM 96 O ALA 25 4.661 2.651 -2.251 1.00 0.00 O ATOM 97 N THR 26 3.792 1.455 -3.944 1.00 0.00 N ATOM 98 CA THR 26 3.411 2.632 -4.733 1.00 0.00 C ATOM 99 C THR 26 1.956 3.020 -4.445 1.00 0.00 C ATOM 100 O THR 26 1.028 2.285 -4.790 1.00 0.00 O ATOM 101 N ILE 27 1.756 4.161 -3.794 1.00 0.00 N ATOM 102 CA ILE 27 0.409 4.656 -3.510 1.00 0.00 C ATOM 103 C ILE 27 0.087 5.867 -4.394 1.00 0.00 C ATOM 104 O ILE 27 0.806 6.867 -4.386 1.00 0.00 O ATOM 105 N GLU 28 -0.990 5.772 -5.165 1.00 0.00 N ATOM 106 CA GLU 28 -1.319 6.811 -6.144 1.00 0.00 C ATOM 107 C GLU 28 -2.826 7.083 -6.236 1.00 0.00 C ATOM 108 O GLU 28 -3.657 6.215 -5.961 1.00 0.00 O ATOM 109 N ASN 29 -3.156 8.309 -6.629 1.00 0.00 N ATOM 110 CA ASN 29 -4.543 8.730 -6.853 1.00 0.00 C ATOM 111 C ASN 29 -4.853 8.718 -8.361 1.00 0.00 C ATOM 112 O ASN 29 -4.022 9.121 -9.170 1.00 0.00 O ATOM 113 N GLN 30 -6.037 8.245 -8.743 1.00 0.00 N ATOM 114 CA GLN 30 -6.421 8.185 -10.165 1.00 0.00 C ATOM 115 C GLN 30 -7.695 8.996 -10.463 1.00 0.00 C ATOM 116 O GLN 30 -8.084 9.146 -11.623 1.00 0.00 O ATOM 117 N GLY 31 -8.332 9.531 -9.420 1.00 0.00 N ATOM 118 CA GLY 31 -9.593 10.257 -9.591 1.00 0.00 C ATOM 119 C GLY 31 -9.425 11.681 -10.127 1.00 0.00 C ATOM 120 O GLY 31 -10.339 12.229 -10.746 1.00 0.00 O ATOM 121 N ASN 32 -8.256 12.280 -9.896 1.00 0.00 N ATOM 122 CA ASN 32 -8.007 13.658 -10.334 1.00 0.00 C ATOM 123 C ASN 32 -8.420 14.717 -9.306 1.00 0.00 C ATOM 124 O ASN 32 -8.531 15.900 -9.630 1.00 0.00 O ATOM 125 N LYS 33 -8.629 14.290 -8.064 1.00 0.00 N ATOM 126 CA LYS 33 -8.984 15.188 -6.954 1.00 0.00 C ATOM 127 C LYS 33 -8.151 14.859 -5.698 1.00 0.00 C ATOM 128 O LYS 33 -7.870 13.692 -5.425 1.00 0.00 O ATOM 129 N ASP 34 -7.755 15.892 -4.949 1.00 0.00 N ATOM 130 CA ASP 34 -6.888 15.703 -3.782 1.00 0.00 C ATOM 131 C ASP 34 -7.557 14.980 -2.610 1.00 0.00 C ATOM 132 O ASP 34 -8.733 15.208 -2.313 1.00 0.00 O ATOM 133 N SER 35 -6.801 14.102 -1.944 1.00 0.00 N ATOM 134 CA SER 35 -7.308 13.333 -0.799 1.00 0.00 C ATOM 135 C SER 35 -6.333 13.384 0.400 1.00 0.00 C ATOM 136 O SER 35 -5.212 12.876 0.321 1.00 0.00 O ATOM 137 N THR 36 -6.742 14.010 1.525 1.00 0.00 N ATOM 138 CA THR 36 -5.947 14.039 2.769 1.00 0.00 C ATOM 139 C THR 36 -6.232 12.842 3.705 1.00 0.00 C ATOM 140 O THR 36 -5.525 12.617 4.689 1.00 0.00 O ATOM 141 N SER 37 -7.281 12.088 3.384 1.00 0.00 N ATOM 142 CA SER 37 -7.771 10.973 4.217 1.00 0.00 C ATOM 143 C SER 37 -7.029 9.652 3.946 1.00 0.00 C ATOM 144 O SER 37 -7.459 8.590 4.397 1.00 0.00 O ATOM 145 N PHE 38 -5.902 9.710 3.240 1.00 0.00 N ATOM 146 CA PHE 38 -5.289 8.504 2.664 1.00 0.00 C ATOM 147 C PHE 38 -4.336 7.805 3.650 1.00 0.00 C ATOM 148 O PHE 38 -3.156 8.143 3.768 1.00 0.00 O ATOM 149 N ASN 39 -4.889 6.832 4.380 1.00 0.00 N ATOM 150 CA ASN 39 -4.105 5.963 5.266 1.00 0.00 C ATOM 151 C ASN 39 -3.777 4.636 4.564 1.00 0.00 C ATOM 152 O ASN 39 -4.675 3.959 4.065 1.00 0.00 O ATOM 153 N VAL 40 -2.499 4.270 4.537 1.00 0.00 N ATOM 154 CA VAL 40 -2.055 3.021 3.898 1.00 0.00 C ATOM 155 C VAL 40 -1.494 2.037 4.938 1.00 0.00 C ATOM 156 O VAL 40 -0.590 2.376 5.698 1.00 0.00 O ATOM 157 N SER 41 -2.033 0.822 4.974 1.00 0.00 N ATOM 158 CA SER 41 -1.592 -0.191 5.945 1.00 0.00 C ATOM 159 C SER 41 -1.171 -1.499 5.255 1.00 0.00 C ATOM 160 O SER 41 -1.694 -1.855 4.200 1.00 0.00 O ATOM 161 N LEU 42 -0.223 -2.210 5.869 1.00 0.00 N ATOM 162 CA LEU 42 0.273 -3.485 5.331 1.00 0.00 C ATOM 163 C LEU 42 0.059 -4.637 6.327 1.00 0.00 C ATOM 164 O LEU 42 0.461 -4.556 7.493 1.00 0.00 O ATOM 165 N LEU 43 -0.579 -5.706 5.853 1.00 0.00 N ATOM 166 CA LEU 43 -0.876 -6.875 6.685 1.00 0.00 C ATOM 167 C LEU 43 -0.227 -8.144 6.119 1.00 0.00 C ATOM 168 O LEU 43 -0.255 -8.388 4.916 1.00 0.00 O ATOM 169 N VAL 44 0.358 -8.947 6.999 1.00 0.00 N ATOM 170 CA VAL 44 0.927 -10.245 6.624 1.00 0.00 C ATOM 171 C VAL 44 0.060 -11.381 7.186 1.00 0.00 C ATOM 172 O VAL 44 0.036 -11.610 8.398 1.00 0.00 O ATOM 173 N ASP 45 -0.673 -12.067 6.305 1.00 0.00 N ATOM 174 CA ASP 45 -1.638 -13.101 6.717 1.00 0.00 C ATOM 175 C ASP 45 -2.691 -12.527 7.682 1.00 0.00 C ATOM 176 O ASP 45 -3.173 -13.217 8.584 1.00 0.00 O ATOM 177 N GLY 46 -3.063 -11.264 7.461 1.00 0.00 N ATOM 178 CA GLY 46 -4.041 -10.595 8.318 1.00 0.00 C ATOM 179 C GLY 46 -3.424 -9.890 9.529 1.00 0.00 C ATOM 180 O GLY 46 -4.120 -9.195 10.268 1.00 0.00 O ATOM 181 N ILE 47 -2.118 -10.064 9.730 1.00 0.00 N ATOM 182 CA ILE 47 -1.413 -9.457 10.874 1.00 0.00 C ATOM 183 C ILE 47 -0.798 -8.098 10.496 1.00 0.00 C ATOM 184 O ILE 47 -0.032 -8.006 9.543 1.00 0.00 O ATOM 185 N VAL 48 -1.121 -7.051 11.254 1.00 0.00 N ATOM 186 CA VAL 48 -0.626 -5.698 10.954 1.00 0.00 C ATOM 187 C VAL 48 0.902 -5.591 11.114 1.00 0.00 C ATOM 188 O VAL 48 1.440 -5.782 12.210 1.00 0.00 O ATOM 189 N VAL 49 1.597 -5.288 10.016 1.00 0.00 N ATOM 190 CA VAL 49 3.048 -5.073 10.056 1.00 0.00 C ATOM 191 C VAL 49 3.391 -3.601 10.351 1.00 0.00 C ATOM 192 O VAL 49 4.248 -3.313 11.190 1.00 0.00 O ATOM 193 N ASP 50 2.704 -2.676 9.676 1.00 0.00 N ATOM 194 CA ASP 50 2.961 -1.237 9.845 1.00 0.00 C ATOM 195 C ASP 50 1.879 -0.387 9.150 1.00 0.00 C ATOM 196 O ASP 50 1.143 -0.883 8.292 1.00 0.00 O ATOM 197 N THR 51 1.784 0.890 9.531 1.00 0.00 N ATOM 198 CA THR 51 0.815 1.815 8.925 1.00 0.00 C ATOM 199 C THR 51 1.476 3.147 8.525 1.00 0.00 C ATOM 200 O THR 51 2.468 3.569 9.124 1.00 0.00 O ATOM 201 N GLN 52 0.915 3.796 7.506 1.00 0.00 N ATOM 202 CA GLN 52 1.371 5.119 7.062 1.00 0.00 C ATOM 203 C GLN 52 0.178 6.057 6.822 1.00 0.00 C ATOM 204 O GLN 52 -0.897 5.620 6.410 1.00 0.00 O ATOM 205 N THR 53 0.375 7.346 7.076 1.00 0.00 N ATOM 206 CA THR 53 -0.643 8.361 6.772 1.00 0.00 C ATOM 207 C THR 53 -0.072 9.408 5.806 1.00 0.00 C ATOM 208 O THR 53 0.903 10.092 6.128 1.00 0.00 O ATOM 209 N VAL 54 -0.680 9.532 4.627 1.00 0.00 N ATOM 210 CA VAL 54 -0.183 10.440 3.584 1.00 0.00 C ATOM 211 C VAL 54 -1.333 11.188 2.894 1.00 0.00 C ATOM 212 O VAL 54 -2.507 10.914 3.139 1.00 0.00 O ATOM 213 N THR 55 -0.984 12.141 2.039 1.00 0.00 N ATOM 214 CA THR 55 -1.980 12.871 1.244 1.00 0.00 C ATOM 215 C THR 55 -1.638 12.800 -0.247 1.00 0.00 C ATOM 216 O THR 55 -0.497 13.057 -0.640 1.00 0.00 O ATOM 217 N LEU 57 -2.628 12.480 -1.076 1.00 0.00 N ATOM 218 CA LEU 57 -2.412 12.357 -2.525 1.00 0.00 C ATOM 219 C LEU 57 -3.255 13.374 -3.305 1.00 0.00 C ATOM 220 O LEU 57 -4.484 13.353 -3.245 1.00 0.00 O ATOM 221 N GLU 58 -2.591 14.245 -4.057 1.00 0.00 N ATOM 222 CA GLU 58 -3.295 15.246 -4.849 1.00 0.00 C ATOM 223 C GLU 58 -3.881 14.681 -6.139 1.00 0.00 C ATOM 224 O GLU 58 -3.975 13.459 -6.300 1.00 0.00 O ATOM 225 N SER 59 -4.288 15.542 -7.086 1.00 0.00 N ATOM 226 CA SER 59 -4.840 15.087 -8.369 1.00 0.00 C ATOM 227 C SER 59 -3.848 14.214 -9.157 1.00 0.00 C ATOM 228 O SER 59 -2.966 14.724 -9.852 1.00 0.00 O ATOM 229 N GLU 60 -3.987 12.895 -9.001 1.00 0.00 N ATOM 230 CA GLU 60 -3.135 11.911 -9.686 1.00 0.00 C ATOM 231 C GLU 60 -1.666 11.978 -9.227 1.00 0.00 C ATOM 232 O GLU 60 -0.740 11.905 -10.035 1.00 0.00 O ATOM 233 N ASN 61 -1.467 12.086 -7.914 1.00 0.00 N ATOM 234 CA ASN 61 -0.124 12.068 -7.320 1.00 0.00 C ATOM 235 C ASN 61 0.230 10.669 -6.773 1.00 0.00 C ATOM 236 O ASN 61 -0.657 9.899 -6.391 1.00 0.00 O ATOM 237 N SER 62 1.528 10.351 -6.735 1.00 0.00 N ATOM 238 CA SER 62 2.010 9.073 -6.190 1.00 0.00 C ATOM 239 C SER 62 3.156 9.280 -5.184 1.00 0.00 C ATOM 240 O SER 62 4.049 10.099 -5.402 1.00 0.00 O ATOM 241 N THR 63 3.127 8.525 -4.086 1.00 0.00 N ATOM 242 CA THR 63 4.232 8.513 -3.116 1.00 0.00 C ATOM 243 C THR 63 4.818 7.093 -3.004 1.00 0.00 C ATOM 244 O THR 63 4.075 6.109 -2.992 1.00 0.00 O ATOM 245 N ASN 64 6.144 6.982 -2.932 1.00 0.00 N ATOM 246 CA ASN 64 6.803 5.670 -2.854 1.00 0.00 C ATOM 247 C ASN 64 7.230 5.329 -1.413 1.00 0.00 C ATOM 248 O ASN 64 8.115 5.972 -0.843 1.00 0.00 O ATOM 249 N VAL 65 6.597 4.309 -0.835 1.00 0.00 N ATOM 250 CA VAL 65 6.899 3.864 0.536 1.00 0.00 C ATOM 251 C VAL 65 7.735 2.571 0.531 1.00 0.00 C ATOM 252 O VAL 65 7.584 1.731 -0.352 1.00 0.00 O ATOM 253 N ASP 66 8.623 2.420 1.512 1.00 0.00 N ATOM 254 CA ASP 66 9.420 1.187 1.656 1.00 0.00 C ATOM 255 C ASP 66 9.306 0.598 3.064 1.00 0.00 C ATOM 256 O ASP 66 8.984 1.299 4.025 1.00 0.00 O ATOM 257 N PHE 67 9.563 -0.702 3.174 1.00 0.00 N ATOM 258 CA PHE 67 9.663 -1.367 4.476 1.00 0.00 C ATOM 259 C PHE 67 10.524 -2.635 4.383 1.00 0.00 C ATOM 260 O PHE 67 10.555 -3.308 3.346 1.00 0.00 O ATOM 261 N HIS 68 11.223 -2.956 5.471 1.00 0.00 N ATOM 262 CA HIS 68 12.095 -4.136 5.517 1.00 0.00 C ATOM 263 C HIS 68 11.521 -5.203 6.461 1.00 0.00 C ATOM 264 O HIS 68 11.421 -4.989 7.667 1.00 0.00 O ATOM 265 N TRP 69 11.151 -6.350 5.904 1.00 0.00 N ATOM 266 CA TRP 69 10.516 -7.432 6.673 1.00 0.00 C ATOM 267 C TRP 69 11.464 -8.629 6.863 1.00 0.00 C ATOM 268 O TRP 69 12.136 -9.057 5.924 1.00 0.00 O ATOM 269 N THR 70 11.516 -9.157 8.089 1.00 0.00 N ATOM 270 CA THR 70 12.349 -10.330 8.402 1.00 0.00 C ATOM 271 C THR 70 11.485 -11.528 8.828 1.00 0.00 C ATOM 272 O THR 70 11.021 -11.595 9.971 1.00 0.00 O ATOM 273 N LEU 71 11.242 -12.489 7.918 1.00 0.00 N ATOM 274 CA LEU 71 10.504 -13.718 8.247 1.00 0.00 C ATOM 275 C LEU 71 11.351 -14.732 9.039 1.00 0.00 C ATOM 276 O LEU 71 12.133 -15.489 8.465 1.00 0.00 O ATOM 285 N ALA 75 9.573 -20.179 8.889 1.00 0.00 N ATOM 286 CA ALA 75 9.531 -20.649 7.495 1.00 0.00 C ATOM 287 C ALA 75 8.112 -21.071 7.066 1.00 0.00 C ATOM 288 O ALA 75 7.375 -21.703 7.826 1.00 0.00 O ATOM 289 N ASN 76 7.754 -20.733 5.827 1.00 0.00 N ATOM 290 CA ASN 76 6.417 -21.009 5.302 1.00 0.00 C ATOM 291 C ASN 76 5.967 -19.956 4.290 1.00 0.00 C ATOM 292 O ASN 76 6.708 -19.023 3.990 1.00 0.00 O ATOM 293 N SER 77 4.759 -20.090 3.756 1.00 0.00 N ATOM 294 CA SER 77 4.244 -19.108 2.792 1.00 0.00 C ATOM 295 C SER 77 3.402 -18.023 3.483 1.00 0.00 C ATOM 296 O SER 77 2.457 -18.320 4.214 1.00 0.00 O ATOM 297 N TYR 78 3.760 -16.760 3.242 1.00 0.00 N ATOM 298 CA TYR 78 3.079 -15.617 3.861 1.00 0.00 C ATOM 299 C TYR 78 2.553 -14.646 2.798 1.00 0.00 C ATOM 300 O TYR 78 3.273 -14.265 1.877 1.00 0.00 O ATOM 301 N THR 79 1.295 -14.250 2.930 1.00 0.00 N ATOM 302 CA THR 79 0.677 -13.306 1.997 1.00 0.00 C ATOM 303 C THR 79 0.714 -11.872 2.549 1.00 0.00 C ATOM 304 O THR 79 0.202 -11.599 3.635 1.00 0.00 O ATOM 305 N LEU 80 1.334 -10.966 1.796 1.00 0.00 N ATOM 306 CA LEU 80 1.415 -9.553 2.174 1.00 0.00 C ATOM 307 C LEU 80 0.373 -8.718 1.407 1.00 0.00 C ATOM 308 O LEU 80 0.379 -8.669 0.175 1.00 0.00 O ATOM 309 N THR 81 -0.528 -8.075 2.142 1.00 0.00 N ATOM 310 CA THR 81 -1.568 -7.233 1.544 1.00 0.00 C ATOM 311 C THR 81 -1.410 -5.762 1.948 1.00 0.00 C ATOM 312 O THR 81 -0.885 -5.450 3.016 1.00 0.00 O ATOM 313 N VAL 82 -1.868 -4.867 1.081 1.00 0.00 N ATOM 314 CA VAL 82 -1.890 -3.431 1.381 1.00 0.00 C ATOM 315 C VAL 82 -3.286 -2.851 1.132 1.00 0.00 C ATOM 316 O VAL 82 -3.901 -3.109 0.093 1.00 0.00 O ATOM 317 N ASN 83 -3.780 -2.074 2.088 1.00 0.00 N ATOM 318 CA ASN 83 -5.113 -1.464 1.995 1.00 0.00 C ATOM 319 C ASN 83 -5.055 0.040 2.264 1.00 0.00 C ATOM 320 O ASN 83 -4.279 0.504 3.103 1.00 0.00 O ATOM 321 N VAL 84 -5.871 0.807 1.541 1.00 0.00 N ATOM 322 CA VAL 84 -5.945 2.256 1.742 1.00 0.00 C ATOM 323 C VAL 84 -7.363 2.704 2.147 1.00 0.00 C ATOM 324 O VAL 84 -8.359 2.189 1.641 1.00 0.00 O ATOM 325 N ASP 85 -7.427 3.670 3.068 1.00 0.00 N ATOM 326 CA ASP 85 -8.691 4.217 3.591 1.00 0.00 C ATOM 327 C ASP 85 -9.669 3.116 4.055 1.00 0.00 C ATOM 328 O ASP 85 -10.850 3.116 3.702 1.00 0.00 O ATOM 329 N PRO 86 -9.170 2.185 4.870 1.00 0.00 N ATOM 330 CA PRO 86 -10.025 1.168 5.509 1.00 0.00 C ATOM 331 C PRO 86 -11.201 1.819 6.255 1.00 0.00 C ATOM 332 O PRO 86 -12.272 1.226 6.403 1.00 0.00 O ATOM 333 N GLU 87 -10.973 3.040 6.735 1.00 0.00 N ATOM 334 CA GLU 87 -11.970 3.786 7.515 1.00 0.00 C ATOM 335 C GLU 87 -13.202 4.128 6.651 1.00 0.00 C ATOM 336 O GLU 87 -14.267 4.470 7.182 1.00 0.00 O ATOM 337 N ASN 88 -13.039 4.039 5.324 1.00 0.00 N ATOM 338 CA ASN 88 -14.107 4.348 4.363 1.00 0.00 C ATOM 339 C ASN 88 -14.620 5.780 4.576 1.00 0.00 C ATOM 340 O ASN 88 -15.810 6.006 4.795 1.00 0.00 O ATOM 341 N ALA 89 -13.712 6.744 4.504 1.00 0.00 N ATOM 342 CA ALA 89 -14.058 8.150 4.730 1.00 0.00 C ATOM 343 C ALA 89 -14.608 8.802 3.457 1.00 0.00 C ATOM 344 O ALA 89 -15.522 9.626 3.513 1.00 0.00 O ATOM 345 N VAL 90 -14.056 8.423 2.306 1.00 0.00 N ATOM 346 CA VAL 90 -14.443 9.036 1.030 1.00 0.00 C ATOM 347 C VAL 90 -15.057 8.018 0.051 1.00 0.00 C ATOM 348 O VAL 90 -14.634 6.865 -0.019 1.00 0.00 O ATOM 349 N ASN 91 -16.079 8.454 -0.687 1.00 0.00 N ATOM 350 CA ASN 91 -16.697 7.628 -1.730 1.00 0.00 C ATOM 351 C ASN 91 -15.924 7.764 -3.051 1.00 0.00 C ATOM 352 O ASN 91 -15.819 8.860 -3.604 1.00 0.00 O ATOM 353 N GLU 92 -15.388 6.653 -3.557 1.00 0.00 N ATOM 354 CA GLU 92 -14.528 6.686 -4.749 1.00 0.00 C ATOM 355 C GLU 92 -15.139 5.947 -5.950 1.00 0.00 C ATOM 356 O GLU 92 -16.186 5.300 -5.844 1.00 0.00 O ATOM 357 N GLY 93 -14.451 6.037 -7.092 1.00 0.00 N ATOM 358 CA GLY 93 -14.929 5.450 -8.350 1.00 0.00 C ATOM 359 C GLY 93 -14.746 3.925 -8.389 1.00 0.00 C ATOM 360 O GLY 93 -15.613 3.205 -8.880 1.00 0.00 O ATOM 361 N ASN 94 -13.624 3.428 -7.874 1.00 0.00 N ATOM 362 CA ASN 94 -13.373 1.981 -7.851 1.00 0.00 C ATOM 363 C ASN 94 -13.187 1.468 -6.412 1.00 0.00 C ATOM 364 O ASN 94 -12.256 1.858 -5.713 1.00 0.00 O ATOM 365 N GLU 95 -14.070 0.565 -5.998 1.00 0.00 N ATOM 366 CA GLU 95 -14.059 0.011 -4.638 1.00 0.00 C ATOM 367 C GLU 95 -13.065 -1.159 -4.512 1.00 0.00 C ATOM 368 O GLU 95 -12.619 -1.508 -3.416 1.00 0.00 O ATOM 369 N SER 96 -12.718 -1.759 -5.646 1.00 0.00 N ATOM 370 CA SER 96 -11.820 -2.918 -5.681 1.00 0.00 C ATOM 371 C SER 96 -10.356 -2.487 -5.899 1.00 0.00 C ATOM 372 O SER 96 -9.435 -3.304 -5.845 1.00 0.00 O ATOM 373 N ASN 97 -10.148 -1.192 -6.107 1.00 0.00 N ATOM 374 CA ASN 97 -8.821 -0.658 -6.445 1.00 0.00 C ATOM 375 C ASN 97 -7.992 -0.348 -5.182 1.00 0.00 C ATOM 376 O ASN 97 -6.787 -0.110 -5.257 1.00 0.00 O ATOM 377 N ASN 98 -8.644 -0.386 -4.023 1.00 0.00 N ATOM 378 CA ASN 98 -8.020 0.015 -2.750 1.00 0.00 C ATOM 379 C ASN 98 -7.219 -1.123 -2.083 1.00 0.00 C ATOM 380 O ASN 98 -6.667 -0.938 -0.995 1.00 0.00 O ATOM 381 N THR 99 -7.156 -2.294 -2.722 1.00 0.00 N ATOM 382 CA THR 99 -6.498 -3.471 -2.125 1.00 0.00 C ATOM 383 C THR 99 -5.447 -4.094 -3.063 1.00 0.00 C ATOM 384 O THR 99 -5.675 -4.245 -4.265 1.00 0.00 O ATOM 385 N LEU 100 -4.294 -4.458 -2.500 1.00 0.00 N ATOM 386 CA LEU 100 -3.240 -5.169 -3.244 1.00 0.00 C ATOM 387 C LEU 100 -2.847 -6.473 -2.527 1.00 0.00 C ATOM 388 O LEU 100 -2.774 -6.514 -1.298 1.00 0.00 O ATOM 389 N THR 101 -2.594 -7.535 -3.299 1.00 0.00 N ATOM 390 CA THR 101 -2.255 -8.857 -2.735 1.00 0.00 C ATOM 391 C THR 101 -0.959 -9.429 -3.333 1.00 0.00 C ATOM 392 O THR 101 -0.872 -9.659 -4.540 1.00 0.00 O ATOM 393 N ALA 102 0.040 -9.673 -2.483 1.00 0.00 N ATOM 394 CA ALA 102 1.330 -10.223 -2.927 1.00 0.00 C ATOM 395 C ALA 102 1.691 -11.491 -2.126 1.00 0.00 C ATOM 396 O ALA 102 1.757 -11.463 -0.898 1.00 0.00 O ATOM 397 N LEU 103 1.918 -12.601 -2.828 1.00 0.00 N ATOM 398 CA LEU 103 2.194 -13.891 -2.180 1.00 0.00 C ATOM 399 C LEU 103 3.709 -14.149 -2.038 1.00 0.00 C ATOM 400 O LEU 103 4.438 -14.203 -3.031 1.00 0.00 O ATOM 401 N VAL 104 4.176 -14.323 -0.800 1.00 0.00 N ATOM 402 CA VAL 104 5.603 -14.558 -0.526 1.00 0.00 C ATOM 403 C VAL 104 5.859 -15.980 0.012 1.00 0.00 C ATOM 404 O VAL 104 5.080 -16.513 0.804 1.00 0.00 O ATOM 405 N GLY 105 6.961 -16.586 -0.425 1.00 0.00 N ATOM 406 CA GLY 105 7.363 -17.924 0.038 1.00 0.00 C ATOM 407 C GLY 105 8.666 -17.858 0.846 1.00 0.00 C ATOM 408 O GLY 105 9.716 -17.494 0.318 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 396 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 39.54 66.8 184 92.5 199 ARMSMC SECONDARY STRUCTURE . . 34.07 62.7 102 93.6 109 ARMSMC SURFACE . . . . . . . . 40.03 67.5 114 91.2 125 ARMSMC BURIED . . . . . . . . 38.73 65.7 70 94.6 74 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 86 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 70 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 50 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 53 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 27 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 12 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 12 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 1 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 0 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 0 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.35 (Number of atoms: 99) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.35 99 97.1 102 CRMSCA CRN = ALL/NP . . . . . 0.0237 CRMSCA SECONDARY STRUCTURE . . 1.98 56 100.0 56 CRMSCA SURFACE . . . . . . . . 2.57 62 95.4 65 CRMSCA BURIED . . . . . . . . 1.93 37 100.0 37 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.35 396 78.3 506 CRMSMC SECONDARY STRUCTURE . . 2.05 224 80.3 279 CRMSMC SURFACE . . . . . . . . 2.56 248 77.0 322 CRMSMC BURIED . . . . . . . . 1.94 148 80.4 184 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 1090 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 1006 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 638 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 655 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 435 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.35 396 26.4 1498 CRMSALL SECONDARY STRUCTURE . . 2.05 224 26.0 862 CRMSALL SURFACE . . . . . . . . 2.56 248 27.1 915 CRMSALL BURIED . . . . . . . . 1.94 148 25.4 583 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.081 1.000 0.500 99 97.1 102 ERRCA SECONDARY STRUCTURE . . 1.756 1.000 0.500 56 100.0 56 ERRCA SURFACE . . . . . . . . 2.316 1.000 0.500 62 95.4 65 ERRCA BURIED . . . . . . . . 1.688 1.000 0.500 37 100.0 37 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.085 1.000 0.500 396 78.3 506 ERRMC SECONDARY STRUCTURE . . 1.795 1.000 0.500 224 80.3 279 ERRMC SURFACE . . . . . . . . 2.315 1.000 0.500 248 77.0 322 ERRMC BURIED . . . . . . . . 1.701 1.000 0.500 148 80.4 184 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 1090 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 1006 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 638 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 655 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 435 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 2.085 1.000 0.500 396 26.4 1498 ERRALL SECONDARY STRUCTURE . . 1.795 1.000 0.500 224 26.0 862 ERRALL SURFACE . . . . . . . . 2.315 1.000 0.500 248 27.1 915 ERRALL BURIED . . . . . . . . 1.701 1.000 0.500 148 25.4 583 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 15 57 79 99 99 99 102 DISTCA CA (P) 14.71 55.88 77.45 97.06 97.06 102 DISTCA CA (RMS) 0.82 1.37 1.75 2.35 2.35 DISTCA ALL (N) 58 226 312 393 396 396 1498 DISTALL ALL (P) 3.87 15.09 20.83 26.23 26.44 1498 DISTALL ALL (RMS) 0.78 1.39 1.75 2.30 2.35 DISTALL END of the results output