####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 90 ( 442), selected 90 , name T0540TS444_1-D1 # Molecule2: number of CA atoms 90 ( 716), selected 90 , name T0540-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0540TS444_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 7 - 37 4.89 16.92 LONGEST_CONTINUOUS_SEGMENT: 31 8 - 38 4.96 16.76 LCS_AVERAGE: 23.90 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 14 - 25 1.87 16.06 LCS_AVERAGE: 7.70 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 8 16 - 23 0.59 19.89 LONGEST_CONTINUOUS_SEGMENT: 8 28 - 35 0.83 20.12 LCS_AVERAGE: 5.02 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 90 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 4 7 11 3 4 4 5 7 7 7 7 9 10 10 15 17 17 17 20 21 23 26 38 LCS_GDT T 2 T 2 4 7 11 3 4 4 5 7 7 7 7 7 10 10 15 17 20 22 23 28 36 39 41 LCS_GDT D 3 D 3 4 7 11 3 4 4 5 7 7 7 8 10 12 14 16 18 20 22 23 29 36 36 39 LCS_GDT L 4 L 4 4 7 11 3 4 4 5 7 7 7 8 10 12 14 16 18 20 22 23 28 36 37 39 LCS_GDT V 5 V 5 3 7 11 1 3 4 4 7 7 7 8 10 12 14 16 18 21 24 28 35 42 45 46 LCS_GDT A 6 A 6 3 7 14 0 3 4 5 7 7 7 7 9 11 13 16 25 30 34 38 41 43 45 46 LCS_GDT V 7 V 7 3 7 31 0 3 3 4 7 7 7 7 9 11 13 19 27 30 34 38 41 43 45 46 LCS_GDT W 8 W 8 3 4 31 3 3 3 3 5 8 8 9 15 21 26 30 34 36 38 40 41 43 45 46 LCS_GDT D 9 D 9 3 4 31 3 3 3 3 4 8 8 13 20 23 27 30 34 36 38 40 41 43 45 46 LCS_GDT V 10 V 10 3 4 31 3 3 3 3 4 8 8 9 9 20 23 28 33 36 38 40 41 43 45 46 LCS_GDT A 11 A 11 3 6 31 1 3 5 8 13 16 18 21 24 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT L 12 L 12 5 6 31 4 4 5 9 13 15 18 19 21 24 27 30 33 36 38 40 41 43 45 46 LCS_GDT S 13 S 13 5 6 31 4 4 5 5 11 15 16 17 20 22 25 27 30 34 38 40 41 43 44 46 LCS_GDT D 14 D 14 5 12 31 4 4 7 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT G 15 G 15 5 12 31 4 4 5 5 5 10 14 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT V 16 V 16 8 12 31 3 8 9 10 12 15 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT H 17 H 17 8 12 31 6 8 8 10 12 15 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT K 18 K 18 8 12 31 6 8 9 10 12 15 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT I 19 I 19 8 12 31 6 8 8 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT E 20 E 20 8 12 31 6 8 9 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT F 21 F 21 8 12 31 6 8 8 10 12 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT E 22 E 22 8 12 31 6 8 8 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT H 23 H 23 8 12 31 6 8 8 10 11 13 14 19 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT G 24 G 24 5 12 31 3 3 6 10 11 15 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT T 25 T 25 4 12 31 3 3 6 10 11 15 18 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT T 26 T 26 4 10 31 3 4 5 6 11 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT S 27 S 27 5 10 31 3 6 9 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT G 28 G 28 8 10 31 5 6 9 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT K 29 K 29 8 10 31 3 7 9 10 13 16 18 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT R 30 R 30 8 10 31 3 7 9 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT V 31 V 31 8 10 31 3 7 9 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT V 32 V 32 8 10 31 5 7 8 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT Y 33 Y 33 8 10 31 5 7 8 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT V 34 V 34 8 10 31 5 7 8 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT D 35 D 35 8 10 31 5 7 8 10 13 16 18 21 24 26 29 30 34 36 38 40 41 43 45 46 LCS_GDT G 36 G 36 6 8 31 4 5 5 7 9 11 19 21 24 26 29 30 34 36 38 40 41 43 45 46 LCS_GDT K 37 K 37 6 8 31 4 5 5 7 8 8 11 16 18 24 28 29 33 36 38 40 41 43 45 46 LCS_GDT E 38 E 38 6 8 31 4 5 5 7 8 8 10 13 14 18 21 23 26 27 33 37 41 43 43 46 LCS_GDT E 39 E 39 6 8 29 3 4 5 7 8 8 10 10 14 17 21 23 26 32 36 39 41 43 44 46 LCS_GDT I 40 I 40 6 8 22 3 5 5 7 8 8 10 13 14 18 21 23 26 27 29 31 32 34 38 44 LCS_GDT R 41 R 41 3 8 22 3 3 4 7 8 8 10 13 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT K 42 K 42 3 8 22 3 3 4 6 8 8 10 10 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT E 43 E 43 3 6 22 3 3 4 4 6 8 10 13 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT W 44 W 44 3 5 22 3 3 4 4 4 6 7 13 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT M 45 M 45 4 7 22 3 3 4 5 7 7 9 10 13 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT F 46 F 46 4 7 22 3 4 4 5 7 7 9 10 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT K 47 K 47 4 7 22 3 4 4 5 7 7 9 10 14 18 21 23 26 27 28 31 32 34 36 37 LCS_GDT L 48 L 48 4 7 22 3 4 4 5 7 7 9 10 14 18 21 23 26 27 28 30 32 34 36 37 LCS_GDT V 49 V 49 4 7 22 3 3 4 5 7 8 9 13 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT G 50 G 50 4 7 22 0 3 4 5 7 8 9 13 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT K 51 K 51 3 7 22 0 3 3 4 7 8 9 13 14 18 21 23 26 27 29 31 32 34 36 37 LCS_GDT E 52 E 52 3 3 22 0 4 4 4 4 5 8 9 12 16 19 23 26 27 29 31 32 36 41 44 LCS_GDT T 53 T 53 3 3 22 1 4 4 4 4 5 8 10 11 16 19 22 26 27 29 31 39 43 43 45 LCS_GDT F 54 F 54 3 3 22 0 4 4 4 4 5 7 9 12 16 19 25 28 36 38 40 41 43 45 46 LCS_GDT Y 55 Y 55 3 4 22 0 3 3 4 4 5 6 15 18 24 28 30 34 36 38 40 41 43 45 46 LCS_GDT V 56 V 56 3 5 15 0 3 4 5 5 5 6 7 12 15 19 23 27 32 34 36 40 42 45 46 LCS_GDT G 57 G 57 4 5 15 3 4 4 5 7 13 15 16 19 22 27 28 31 33 38 39 41 43 45 46 LCS_GDT A 58 A 58 4 5 12 3 4 4 5 5 6 17 21 26 27 29 30 34 36 38 39 41 43 45 46 LCS_GDT A 59 A 59 4 5 12 3 4 4 6 8 8 10 10 10 12 16 18 31 32 35 38 40 43 44 45 LCS_GDT K 60 K 60 4 5 12 3 6 9 10 12 15 18 21 26 27 29 30 34 36 38 39 41 43 45 46 LCS_GDT T 61 T 61 3 3 12 3 4 4 5 12 15 18 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT K 62 K 62 3 3 12 3 3 5 10 13 16 18 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT A 63 A 63 3 3 12 0 3 4 5 12 15 19 21 26 27 29 30 34 36 38 40 41 43 45 46 LCS_GDT T 64 T 64 3 3 12 3 3 4 4 4 5 7 9 10 14 27 30 34 36 38 40 41 43 45 46 LCS_GDT I 65 I 65 4 4 12 3 4 5 5 5 6 8 9 10 14 17 30 33 36 38 40 41 43 45 46 LCS_GDT N 66 N 66 4 4 12 3 4 5 5 6 7 12 18 21 24 27 30 34 36 38 40 41 43 45 46 LCS_GDT I 67 I 67 4 4 12 3 4 5 5 5 7 8 9 16 20 22 27 30 36 38 40 41 43 45 46 LCS_GDT D 68 D 68 4 4 12 3 4 5 5 6 8 9 17 19 21 24 28 31 36 38 40 41 43 44 46 LCS_GDT A 69 A 69 3 4 12 0 3 3 3 4 6 7 9 10 15 19 21 22 25 32 34 40 43 43 45 LCS_GDT I 70 I 70 4 4 12 1 3 4 4 4 6 8 10 12 16 19 21 23 25 26 31 36 37 41 44 LCS_GDT S 71 S 71 4 4 12 3 4 4 4 4 6 7 9 10 13 17 20 23 24 26 28 29 33 39 43 LCS_GDT G 72 G 72 4 4 12 3 3 4 4 4 6 7 7 8 11 11 15 17 18 20 25 27 33 35 38 LCS_GDT F 73 F 73 4 4 12 3 4 4 4 4 6 7 9 10 12 12 15 17 18 20 22 25 33 37 39 LCS_GDT A 74 A 74 3 4 16 3 4 4 4 5 8 8 9 10 12 15 16 22 24 26 31 36 38 42 44 LCS_GDT Y 75 Y 75 3 4 16 1 4 4 4 5 8 8 10 11 16 19 21 23 25 28 31 36 38 42 44 LCS_GDT E 76 E 76 3 4 16 0 3 3 4 5 8 8 10 12 16 19 21 23 25 28 31 36 38 42 44 LCS_GDT Y 77 Y 77 3 4 16 1 3 3 4 4 9 12 14 16 17 21 23 26 27 29 31 36 38 42 44 LCS_GDT T 78 T 78 3 4 16 0 3 3 8 9 10 12 14 17 18 20 23 24 26 29 31 36 38 42 44 LCS_GDT L 79 L 79 3 3 16 1 3 3 3 6 10 12 15 17 18 20 23 24 26 29 31 36 38 42 44 LCS_GDT E 80 E 80 3 8 16 1 3 5 7 8 10 12 15 16 16 19 23 24 26 28 31 36 38 42 44 LCS_GDT I 81 I 81 3 8 16 3 3 4 7 8 9 9 15 16 16 19 21 23 25 26 31 36 38 42 44 LCS_GDT N 82 N 82 4 8 16 4 4 5 7 8 8 9 15 16 16 18 20 22 26 27 31 36 38 42 44 LCS_GDT G 83 G 83 4 8 16 4 4 6 10 11 13 14 15 17 18 20 23 24 26 28 31 36 38 42 44 LCS_GDT K 84 K 84 4 8 16 4 4 6 9 11 13 13 15 17 18 20 23 24 26 28 31 36 38 42 44 LCS_GDT S 85 S 85 4 8 16 4 4 4 7 8 10 12 15 16 17 20 23 24 26 28 31 36 38 42 44 LCS_GDT L 86 L 86 4 8 16 0 4 5 7 8 9 12 15 16 18 20 23 24 26 28 31 36 38 42 44 LCS_GDT K 87 K 87 4 8 16 0 4 4 7 8 10 12 15 16 16 19 21 23 25 27 31 36 38 42 44 LCS_GDT K 88 K 88 3 4 16 0 3 3 4 6 10 12 15 16 16 19 21 23 25 26 31 36 38 42 44 LCS_GDT Y 89 Y 89 3 4 16 0 3 3 4 4 8 8 9 10 13 19 21 23 25 26 31 36 37 39 41 LCS_GDT M 90 M 90 3 4 16 0 0 3 4 5 6 6 9 10 12 17 20 23 25 26 31 36 37 39 42 LCS_AVERAGE LCS_A: 12.21 ( 5.02 7.70 23.90 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 8 9 10 13 16 19 21 26 27 29 30 34 36 38 40 41 43 45 46 GDT PERCENT_AT 6.67 8.89 10.00 11.11 14.44 17.78 21.11 23.33 28.89 30.00 32.22 33.33 37.78 40.00 42.22 44.44 45.56 47.78 50.00 51.11 GDT RMS_LOCAL 0.35 0.59 0.89 1.20 1.77 2.12 2.65 2.71 3.18 3.26 3.48 3.61 4.28 4.49 4.73 5.16 5.30 5.51 5.92 5.98 GDT RMS_ALL_AT 20.02 19.89 18.75 18.72 17.75 17.61 17.15 17.51 18.18 18.19 18.02 17.82 17.52 17.47 17.54 16.34 17.40 17.53 16.97 16.64 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 20.836 3 0.530 0.504 22.088 0.000 0.000 LGA T 2 T 2 19.469 2 0.054 0.066 20.100 0.000 0.000 LGA D 3 D 3 19.042 3 0.351 0.363 20.972 0.000 0.000 LGA L 4 L 4 17.081 3 0.618 0.579 17.940 0.000 0.000 LGA V 5 V 5 13.873 2 0.189 0.210 14.408 0.000 0.000 LGA A 6 A 6 13.195 0 0.603 0.582 14.546 0.000 0.000 LGA V 7 V 7 12.384 2 0.650 0.591 12.677 0.000 0.000 LGA W 8 W 8 9.332 9 0.616 0.564 9.898 1.548 0.646 LGA D 9 D 9 9.119 3 0.577 0.606 11.678 0.714 0.714 LGA V 10 V 10 11.543 2 0.654 0.618 13.716 1.071 0.612 LGA A 11 A 11 6.755 0 0.653 0.587 8.657 7.024 9.905 LGA L 12 L 12 9.471 3 0.568 0.571 10.660 2.381 1.190 LGA S 13 S 13 12.087 1 0.047 0.053 13.996 0.238 0.159 LGA D 14 D 14 5.012 3 0.120 0.122 7.536 41.190 23.869 LGA G 15 G 15 4.538 0 0.645 0.645 4.538 42.143 42.143 LGA V 16 V 16 2.103 2 0.668 0.613 4.386 57.857 40.204 LGA H 17 H 17 1.965 5 0.114 0.131 4.363 84.405 37.476 LGA K 18 K 18 1.970 4 0.169 0.233 4.922 65.595 32.646 LGA I 19 I 19 2.199 3 0.029 0.027 5.002 71.667 39.107 LGA E 20 E 20 0.641 4 0.020 0.026 3.796 72.024 37.566 LGA F 21 F 21 3.689 6 0.018 0.020 6.520 55.714 21.472 LGA E 22 E 22 1.421 4 0.034 0.036 5.732 54.405 29.735 LGA H 23 H 23 5.214 5 0.639 0.585 6.896 37.619 16.381 LGA G 24 G 24 3.658 0 0.500 0.500 4.322 43.452 43.452 LGA T 25 T 25 3.418 2 0.672 0.603 5.857 45.833 29.252 LGA T 26 T 26 3.389 2 0.428 0.419 4.752 61.190 39.456 LGA S 27 S 27 1.043 1 0.034 0.047 1.781 79.286 66.429 LGA G 28 G 28 2.199 0 0.040 0.040 2.936 62.976 62.976 LGA K 29 K 29 2.577 4 0.111 0.150 2.956 62.857 34.286 LGA R 30 R 30 1.794 6 0.362 0.379 2.296 72.976 33.160 LGA V 31 V 31 1.412 2 0.120 0.143 2.396 72.976 50.952 LGA V 32 V 32 3.127 2 0.085 0.127 3.468 53.690 37.823 LGA Y 33 Y 33 4.462 7 0.104 0.122 5.680 32.024 13.294 LGA V 34 V 34 5.583 2 0.110 0.128 5.889 23.810 16.667 LGA D 35 D 35 6.842 3 0.540 0.542 9.737 13.452 6.786 LGA G 36 G 36 6.198 0 0.064 0.064 8.906 12.857 12.857 LGA K 37 K 37 8.195 4 0.156 0.214 10.161 4.643 3.175 LGA E 38 E 38 13.201 4 0.051 0.124 15.027 0.000 0.000 LGA E 39 E 39 14.693 4 0.622 0.565 19.209 0.000 0.000 LGA I 40 I 40 20.331 3 0.054 0.059 21.298 0.000 0.000 LGA R 41 R 41 24.619 6 0.091 0.113 25.991 0.000 0.000 LGA K 42 K 42 28.399 4 0.637 0.589 30.166 0.000 0.000 LGA E 43 E 43 31.978 4 0.090 0.084 33.577 0.000 0.000 LGA W 44 W 44 33.872 9 0.596 0.590 34.434 0.000 0.000 LGA M 45 M 45 32.857 3 0.686 0.622 34.326 0.000 0.000 LGA F 46 F 46 38.309 6 0.038 0.060 40.928 0.000 0.000 LGA K 47 K 47 38.176 4 0.605 0.586 39.008 0.000 0.000 LGA L 48 L 48 33.082 3 0.146 0.143 35.329 0.000 0.000 LGA V 49 V 49 34.363 2 0.616 0.587 37.055 0.000 0.000 LGA G 50 G 50 32.341 0 0.399 0.399 33.268 0.000 0.000 LGA K 51 K 51 25.418 4 0.651 0.612 27.979 0.000 0.000 LGA E 52 E 52 20.928 4 0.632 0.604 22.784 0.000 0.000 LGA T 53 T 53 18.276 2 0.635 0.594 19.611 0.000 0.000 LGA F 54 F 54 12.281 6 0.682 0.646 14.587 0.476 0.173 LGA Y 55 Y 55 6.990 7 0.624 0.592 8.733 14.881 6.071 LGA V 56 V 56 8.117 2 0.618 0.579 10.855 12.381 7.075 LGA G 57 G 57 5.428 0 0.509 0.509 6.366 37.619 37.619 LGA A 58 A 58 3.606 0 0.207 0.217 6.028 37.262 35.048 LGA A 59 A 59 6.459 0 0.194 0.207 8.556 25.238 20.762 LGA K 60 K 60 2.253 4 0.509 0.497 2.806 69.048 37.884 LGA T 61 T 61 2.152 2 0.606 0.587 3.761 59.524 41.156 LGA K 62 K 62 5.427 4 0.624 0.589 7.760 37.500 17.460 LGA A 63 A 63 3.467 0 0.672 0.619 4.571 41.905 39.810 LGA T 64 T 64 8.181 2 0.618 0.599 9.766 7.500 4.354 LGA I 65 I 65 9.121 3 0.602 0.592 9.536 2.143 1.131 LGA N 66 N 66 8.757 3 0.053 0.066 11.425 1.429 1.310 LGA I 67 I 67 13.237 3 0.609 0.591 14.059 0.000 0.000 LGA D 68 D 68 13.367 3 0.638 0.595 15.377 0.000 0.000 LGA A 69 A 69 17.802 0 0.659 0.596 20.302 0.000 0.000 LGA I 70 I 70 23.343 3 0.674 0.634 25.264 0.000 0.000 LGA S 71 S 71 25.217 1 0.565 0.564 25.557 0.000 0.000 LGA G 72 G 72 26.765 0 0.167 0.167 27.534 0.000 0.000 LGA F 73 F 73 27.861 6 0.270 0.260 29.124 0.000 0.000 LGA A 74 A 74 25.259 0 0.647 0.613 25.859 0.000 0.000 LGA Y 75 Y 75 20.243 7 0.651 0.607 21.523 0.000 0.000 LGA E 76 E 76 21.999 4 0.591 0.576 23.193 0.000 0.000 LGA Y 77 Y 77 21.543 7 0.636 0.594 24.115 0.000 0.000 LGA T 78 T 78 23.630 2 0.588 0.597 24.383 0.000 0.000 LGA L 79 L 79 20.680 3 0.616 0.588 24.026 0.000 0.000 LGA E 80 E 80 23.431 4 0.522 0.559 24.012 0.000 0.000 LGA I 81 I 81 25.820 3 0.646 0.593 29.288 0.000 0.000 LGA N 82 N 82 28.430 3 0.206 0.200 30.979 0.000 0.000 LGA G 83 G 83 32.017 0 0.158 0.158 33.034 0.000 0.000 LGA K 84 K 84 28.324 4 0.016 0.023 29.106 0.000 0.000 LGA S 85 S 85 25.468 1 0.085 0.136 26.636 0.000 0.000 LGA L 86 L 86 22.965 3 0.564 0.529 23.639 0.000 0.000 LGA K 87 K 87 23.700 4 0.589 0.580 25.938 0.000 0.000 LGA K 88 K 88 20.539 4 0.679 0.614 21.718 0.000 0.000 LGA Y 89 Y 89 23.062 7 0.594 0.598 25.379 0.000 0.000 LGA M 90 M 90 22.841 3 0.460 0.543 23.633 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 90 360 360 100.00 716 442 61.73 90 SUMMARY(RMSD_GDC): 12.789 12.762 12.836 17.606 11.492 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 90 90 4.0 21 2.69 21.944 18.934 0.753 LGA_LOCAL RMSD: 2.688 Number of atoms: 21 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 18.286 Number of assigned atoms: 90 Std_ASGN_ATOMS RMSD: 12.789 Standard rmsd on all 90 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.200334 * X + 0.844255 * Y + -0.497091 * Z + 60.894279 Y_new = -0.201667 * X + 0.460977 * Y + 0.864193 * Z + 11.189974 Z_new = 0.958748 * X + 0.273374 * Y + 0.077909 * Z + -1.611416 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.352880 -1.282563 1.293167 [DEG: -134.8101 -73.4855 74.0930 ] ZXZ: -2.619602 1.492809 1.293031 [DEG: -150.0921 85.5316 74.0852 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0540TS444_1-D1 REMARK 2: T0540-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0540TS444_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 90 90 4.0 21 2.69 18.934 12.79 REMARK ---------------------------------------------------------- MOLECULE T0540TS444_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0540 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 N MET 1 36.496 21.631 -9.222 1.00 1.00 N ATOM 2 CA MET 1 37.887 21.225 -9.207 1.00 1.00 C ATOM 3 C MET 1 38.025 19.855 -8.559 1.00 1.00 C ATOM 4 O MET 1 38.640 18.956 -9.130 1.00 1.00 O ATOM 5 CB MET 1 38.701 22.243 -8.415 1.00 1.00 C ATOM 6 N THR 2 37.450 19.696 -7.365 1.00 1.00 N ATOM 7 CA THR 2 37.510 18.440 -6.647 1.00 1.00 C ATOM 8 C THR 2 36.693 17.382 -7.374 1.00 1.00 C ATOM 9 O THR 2 37.038 16.202 -7.345 1.00 1.00 O ATOM 10 CB THR 2 36.950 18.633 -5.242 1.00 1.00 C ATOM 11 N ASP 3 35.609 17.806 -8.027 1.00 1.00 N ATOM 12 CA ASP 3 34.750 16.898 -8.758 1.00 1.00 C ATOM 13 C ASP 3 35.590 15.874 -9.510 1.00 1.00 C ATOM 14 O ASP 3 35.260 14.691 -9.527 1.00 1.00 O ATOM 15 CB ASP 3 33.907 17.688 -9.751 1.00 1.00 C ATOM 16 N LEU 4 36.677 16.335 -10.132 1.00 1.00 N ATOM 17 CA LEU 4 37.558 15.462 -10.881 1.00 1.00 C ATOM 18 C LEU 4 37.713 14.130 -10.160 1.00 1.00 C ATOM 19 O LEU 4 37.814 13.087 -10.800 1.00 1.00 O ATOM 20 CB LEU 4 38.925 16.123 -11.022 1.00 1.00 C ATOM 21 N VAL 5 37.729 14.172 -8.826 1.00 1.00 N ATOM 22 CA VAL 5 37.871 12.972 -8.026 1.00 1.00 C ATOM 23 C VAL 5 37.883 11.743 -8.923 1.00 1.00 C ATOM 24 O VAL 5 38.764 10.893 -8.800 1.00 1.00 O ATOM 25 CB VAL 5 36.701 12.874 -7.051 1.00 1.00 C ATOM 26 N ALA 6 36.904 11.650 -9.824 1.00 1.00 N ATOM 27 CA ALA 6 36.806 10.529 -10.737 1.00 1.00 C ATOM 28 C ALA 6 37.711 10.752 -11.939 1.00 1.00 C ATOM 29 O ALA 6 38.378 9.827 -12.396 1.00 1.00 O ATOM 30 CB ALA 6 35.363 10.385 -11.210 1.00 1.00 C ATOM 31 N VAL 7 37.733 11.985 -12.451 1.00 1.00 N ATOM 32 CA VAL 7 38.554 12.325 -13.595 1.00 1.00 C ATOM 33 C VAL 7 39.918 12.813 -13.134 1.00 1.00 C ATOM 34 O VAL 7 40.772 13.144 -13.954 1.00 1.00 O ATOM 35 CB VAL 7 37.868 13.425 -14.401 1.00 1.00 C ATOM 36 N TRP 8 40.122 12.858 -11.815 1.00 1.00 N ATOM 37 CA TRP 8 41.380 13.303 -11.249 1.00 1.00 C ATOM 38 C TRP 8 42.408 12.183 -11.310 1.00 1.00 C ATOM 39 O TRP 8 43.544 12.357 -10.876 1.00 1.00 O ATOM 40 CB TRP 8 41.163 13.714 -9.796 1.00 1.00 C ATOM 41 N ASP 9 42.005 11.030 -11.849 1.00 1.00 N ATOM 42 CA ASP 9 42.888 9.888 -11.965 1.00 1.00 C ATOM 43 C ASP 9 44.241 10.326 -12.506 1.00 1.00 C ATOM 44 O ASP 9 45.257 10.189 -11.827 1.00 1.00 O ATOM 45 CB ASP 9 42.272 8.866 -12.914 1.00 1.00 C ATOM 46 N VAL 10 44.252 10.856 -13.731 1.00 1.00 N ATOM 47 CA VAL 10 45.477 11.312 -14.358 1.00 1.00 C ATOM 48 C VAL 10 45.652 12.808 -14.137 1.00 1.00 C ATOM 49 O VAL 10 46.769 13.317 -14.192 1.00 1.00 O ATOM 50 CB VAL 10 45.415 11.026 -15.855 1.00 1.00 C ATOM 51 N ALA 11 44.544 13.508 -13.887 1.00 1.00 N ATOM 52 CA ALA 11 44.578 14.939 -13.659 1.00 1.00 C ATOM 53 C ALA 11 45.073 15.233 -12.251 1.00 1.00 C ATOM 54 O ALA 11 45.556 16.330 -11.976 1.00 1.00 O ATOM 55 CB ALA 11 43.175 15.513 -13.832 1.00 1.00 C ATOM 56 N LEU 12 44.953 14.248 -11.357 1.00 1.00 N ATOM 57 CA LEU 12 45.386 14.404 -9.983 1.00 1.00 C ATOM 58 C LEU 12 46.894 14.606 -9.930 1.00 1.00 C ATOM 59 O LEU 12 47.377 15.505 -9.246 1.00 1.00 O ATOM 60 CB LEU 12 45.016 13.152 -9.192 1.00 1.00 C ATOM 61 N SER 13 47.636 13.767 -10.657 1.00 1.00 N ATOM 62 CA SER 13 49.081 13.857 -10.691 1.00 1.00 C ATOM 63 C SER 13 49.510 15.294 -10.959 1.00 1.00 C ATOM 64 O SER 13 50.585 15.711 -10.536 1.00 1.00 O ATOM 65 CB SER 13 49.618 12.954 -11.797 1.00 1.00 C ATOM 66 N ASP 14 48.665 16.047 -11.667 1.00 1.00 N ATOM 67 CA ASP 14 48.958 17.429 -11.988 1.00 1.00 C ATOM 68 C ASP 14 48.486 18.340 -10.863 1.00 1.00 C ATOM 69 O ASP 14 48.755 19.538 -10.878 1.00 1.00 O ATOM 70 CB ASP 14 48.243 17.810 -13.280 1.00 1.00 C ATOM 71 N GLY 15 47.780 17.765 -9.887 1.00 1.00 N ATOM 72 CA GLY 15 47.273 18.523 -8.760 1.00 1.00 C ATOM 73 C GLY 15 46.037 19.309 -9.172 1.00 1.00 C ATOM 74 O GLY 15 45.752 20.361 -8.604 1.00 1.00 O ATOM 75 N VAL 16 45.305 18.797 -10.163 1.00 1.00 N ATOM 76 CA VAL 16 44.105 19.448 -10.647 1.00 1.00 C ATOM 77 C VAL 16 42.873 18.803 -10.029 1.00 1.00 C ATOM 78 O VAL 16 41.753 19.250 -10.265 1.00 1.00 O ATOM 79 CB VAL 16 44.037 19.321 -12.165 1.00 1.00 C ATOM 80 N HIS 17 43.084 17.750 -9.237 1.00 1.00 N ATOM 81 CA HIS 17 41.995 17.047 -8.591 1.00 1.00 C ATOM 82 C HIS 17 42.250 16.952 -7.093 1.00 1.00 C ATOM 83 O HIS 17 43.325 16.532 -6.670 1.00 1.00 O ATOM 84 CB HIS 17 41.881 15.643 -9.174 1.00 1.00 C ATOM 85 N LYS 18 41.255 17.342 -6.292 1.00 1.00 N ATOM 86 CA LYS 18 41.374 17.298 -4.849 1.00 1.00 C ATOM 87 C LYS 18 40.438 16.243 -4.277 1.00 1.00 C ATOM 88 O LYS 18 39.609 15.693 -4.999 1.00 1.00 O ATOM 89 CB LYS 18 41.011 18.662 -4.271 1.00 1.00 C ATOM 90 N ILE 19 40.574 15.963 -2.979 1.00 1.00 N ATOM 91 CA ILE 19 39.743 14.977 -2.318 1.00 1.00 C ATOM 92 C ILE 19 39.850 15.130 -0.808 1.00 1.00 C ATOM 93 O ILE 19 40.948 15.266 -0.273 1.00 1.00 O ATOM 94 CB ILE 19 40.200 13.578 -2.718 1.00 1.00 C ATOM 95 N GLU 20 38.704 15.108 -0.122 1.00 1.00 N ATOM 96 CA GLU 20 38.673 15.244 1.320 1.00 1.00 C ATOM 97 C GLU 20 37.888 14.096 1.936 1.00 1.00 C ATOM 98 O GLU 20 36.900 13.639 1.363 1.00 1.00 O ATOM 99 CB GLU 20 38.008 16.567 1.688 1.00 1.00 C ATOM 100 N PHE 21 38.330 13.629 3.107 1.00 1.00 N ATOM 101 CA PHE 21 37.669 12.538 3.795 1.00 1.00 C ATOM 102 C PHE 21 37.256 12.975 5.193 1.00 1.00 C ATOM 103 O PHE 21 38.088 13.438 5.970 1.00 1.00 O ATOM 104 CB PHE 21 38.624 11.353 3.897 1.00 1.00 C ATOM 105 N GLU 22 35.968 12.826 5.511 1.00 1.00 N ATOM 106 CA GLU 22 35.451 13.205 6.810 1.00 1.00 C ATOM 107 C GLU 22 34.751 12.020 7.460 1.00 1.00 C ATOM 108 O GLU 22 33.935 11.356 6.825 1.00 1.00 O ATOM 109 CB GLU 22 34.456 14.349 6.643 1.00 1.00 C ATOM 110 N HIS 23 35.073 11.758 8.729 1.00 1.00 N ATOM 111 CA HIS 23 34.477 10.658 9.459 1.00 1.00 C ATOM 112 C HIS 23 33.012 10.954 9.747 1.00 1.00 C ATOM 113 O HIS 23 32.191 10.041 9.796 1.00 1.00 O ATOM 114 CB HIS 23 35.221 10.461 10.775 1.00 1.00 C ATOM 115 N GLY 24 32.687 12.235 9.936 1.00 1.00 N ATOM 116 CA GLY 24 31.326 12.647 10.217 1.00 1.00 C ATOM 117 C GLY 24 31.147 12.872 11.712 1.00 1.00 C ATOM 118 O GLY 24 30.022 12.986 12.192 1.00 1.00 O ATOM 119 N THR 25 32.261 12.935 12.444 1.00 1.00 N ATOM 120 CA THR 25 32.223 13.145 13.878 1.00 1.00 C ATOM 121 C THR 25 32.241 14.634 14.188 1.00 1.00 C ATOM 122 O THR 25 33.028 15.381 13.609 1.00 1.00 O ATOM 123 CB THR 25 33.441 12.483 14.516 1.00 1.00 C ATOM 124 N THR 26 31.370 15.066 15.103 1.00 1.00 N ATOM 125 CA THR 26 31.287 16.460 15.485 1.00 1.00 C ATOM 126 C THR 26 32.124 16.711 16.732 1.00 1.00 C ATOM 127 O THR 26 31.723 17.474 17.608 1.00 1.00 O ATOM 128 CB THR 26 29.833 16.821 15.772 1.00 1.00 C ATOM 129 N SER 27 33.290 16.065 16.809 1.00 1.00 N ATOM 130 CA SER 27 34.177 16.220 17.943 1.00 1.00 C ATOM 131 C SER 27 34.569 17.681 18.106 1.00 1.00 C ATOM 132 O SER 27 35.056 18.080 19.162 1.00 1.00 O ATOM 133 CB SER 27 35.431 15.381 17.722 1.00 1.00 C ATOM 134 N GLY 28 34.355 18.478 17.057 1.00 1.00 N ATOM 135 CA GLY 28 34.685 19.888 17.086 1.00 1.00 C ATOM 136 C GLY 28 35.964 20.144 16.303 1.00 1.00 C ATOM 137 O GLY 28 36.508 21.246 16.340 1.00 1.00 O ATOM 138 N LYS 29 36.444 19.119 15.592 1.00 1.00 N ATOM 139 CA LYS 29 37.655 19.235 14.804 1.00 1.00 C ATOM 140 C LYS 29 37.305 19.411 13.332 1.00 1.00 C ATOM 141 O LYS 29 36.168 19.177 12.931 1.00 1.00 O ATOM 142 CB LYS 29 38.492 17.974 14.977 1.00 1.00 C ATOM 143 N ARG 30 38.290 19.824 12.530 1.00 1.00 N ATOM 144 CA ARG 30 38.084 20.027 11.110 1.00 1.00 C ATOM 145 C ARG 30 39.186 19.339 10.318 1.00 1.00 C ATOM 146 O ARG 30 39.902 19.984 9.555 1.00 1.00 O ATOM 147 CB ARG 30 38.104 21.522 10.807 1.00 1.00 C ATOM 148 N VAL 31 39.318 18.022 10.498 1.00 1.00 N ATOM 149 CA VAL 31 40.329 17.251 9.802 1.00 1.00 C ATOM 150 C VAL 31 39.717 16.558 8.593 1.00 1.00 C ATOM 151 O VAL 31 38.514 16.312 8.561 1.00 1.00 O ATOM 152 CB VAL 31 40.907 16.203 10.748 1.00 1.00 C ATOM 153 N VAL 32 40.550 16.243 7.599 1.00 1.00 N ATOM 154 CA VAL 32 40.091 15.580 6.395 1.00 1.00 C ATOM 155 C VAL 32 41.134 14.579 5.918 1.00 1.00 C ATOM 156 O VAL 32 42.331 14.813 6.062 1.00 1.00 O ATOM 157 CB VAL 32 39.853 16.620 5.305 1.00 1.00 C ATOM 158 N TYR 33 40.673 13.462 5.349 1.00 1.00 N ATOM 159 CA TYR 33 41.564 12.432 4.854 1.00 1.00 C ATOM 160 C TYR 33 41.378 12.256 3.354 1.00 1.00 C ATOM 161 O TYR 33 40.299 11.879 2.901 1.00 1.00 O ATOM 162 CB TYR 33 41.255 11.116 5.559 1.00 1.00 C ATOM 163 N VAL 34 42.433 12.533 2.584 1.00 1.00 N ATOM 164 CA VAL 34 42.382 12.406 1.141 1.00 1.00 C ATOM 165 C VAL 34 43.273 11.259 0.685 1.00 1.00 C ATOM 166 O VAL 34 44.493 11.396 0.648 1.00 1.00 O ATOM 167 CB VAL 34 42.862 13.704 0.501 1.00 1.00 C ATOM 168 N ASP 35 42.657 10.126 0.337 1.00 1.00 N ATOM 169 CA ASP 35 43.394 8.962 -0.113 1.00 1.00 C ATOM 170 C ASP 35 43.065 8.666 -1.569 1.00 1.00 C ATOM 171 O ASP 35 42.013 9.065 -2.062 1.00 1.00 O ATOM 172 CB ASP 35 43.013 7.760 0.745 1.00 1.00 C ATOM 173 N GLY 36 43.971 7.964 -2.256 1.00 1.00 N ATOM 174 CA GLY 36 43.775 7.618 -3.649 1.00 1.00 C ATOM 175 C GLY 36 44.326 8.719 -4.545 1.00 1.00 C ATOM 176 O GLY 36 44.160 8.672 -5.762 1.00 1.00 O ATOM 177 N LYS 37 44.983 9.710 -3.939 1.00 1.00 N ATOM 178 CA LYS 37 45.554 10.816 -4.680 1.00 1.00 C ATOM 179 C LYS 37 46.913 10.422 -5.242 1.00 1.00 C ATOM 180 O LYS 37 47.449 9.373 -4.894 1.00 1.00 O ATOM 181 CB LYS 37 45.720 12.016 -3.752 1.00 1.00 C ATOM 182 N GLU 38 47.466 11.267 -6.115 1.00 1.00 N ATOM 183 CA GLU 38 48.755 11.006 -6.721 1.00 1.00 C ATOM 184 C GLU 38 49.842 10.990 -5.656 1.00 1.00 C ATOM 185 O GLU 38 50.106 12.008 -5.020 1.00 1.00 O ATOM 186 CB GLU 38 49.064 12.098 -7.741 1.00 1.00 C ATOM 187 N GLU 39 50.472 9.830 -5.464 1.00 1.00 N ATOM 188 CA GLU 39 51.526 9.684 -4.479 1.00 1.00 C ATOM 189 C GLU 39 52.845 9.367 -5.168 1.00 1.00 C ATOM 190 O GLU 39 52.954 8.363 -5.870 1.00 1.00 O ATOM 191 CB GLU 39 51.171 8.551 -3.521 1.00 1.00 C ATOM 192 N ILE 40 53.847 10.225 -4.966 1.00 1.00 N ATOM 193 CA ILE 40 55.152 10.035 -5.566 1.00 1.00 C ATOM 194 C ILE 40 55.773 8.737 -5.067 1.00 1.00 C ATOM 195 O ILE 40 55.753 8.460 -3.869 1.00 1.00 O ATOM 196 CB ILE 40 56.056 11.204 -5.193 1.00 1.00 C ATOM 197 N ARG 41 56.325 7.946 -5.989 1.00 1.00 N ATOM 198 CA ARG 41 56.948 6.686 -5.642 1.00 1.00 C ATOM 199 C ARG 41 58.083 6.917 -4.654 1.00 1.00 C ATOM 200 O ARG 41 58.664 7.999 -4.618 1.00 1.00 O ATOM 201 CB ARG 41 57.500 6.030 -6.902 1.00 1.00 C ATOM 202 N LYS 42 58.395 5.896 -3.852 1.00 1.00 N ATOM 203 CA LYS 42 59.455 5.992 -2.870 1.00 1.00 C ATOM 204 C LYS 42 60.692 6.620 -3.494 1.00 1.00 C ATOM 205 O LYS 42 61.414 7.364 -2.833 1.00 1.00 O ATOM 206 CB LYS 42 59.801 4.594 -2.364 1.00 1.00 C ATOM 207 N GLU 43 60.936 6.319 -4.772 1.00 1.00 N ATOM 208 CA GLU 43 62.081 6.855 -5.480 1.00 1.00 C ATOM 209 C GLU 43 62.136 8.367 -5.319 1.00 1.00 C ATOM 210 O GLU 43 63.196 8.925 -5.048 1.00 1.00 O ATOM 211 CB GLU 43 61.968 6.506 -6.961 1.00 1.00 C ATOM 212 N TRP 44 60.988 9.028 -5.488 1.00 1.00 N ATOM 213 CA TRP 44 60.909 10.470 -5.362 1.00 1.00 C ATOM 214 C TRP 44 60.582 10.851 -3.926 1.00 1.00 C ATOM 215 O TRP 44 61.253 11.697 -3.339 1.00 1.00 O ATOM 216 CB TRP 44 59.817 10.998 -6.286 1.00 1.00 C ATOM 217 N MET 45 59.546 10.225 -3.362 1.00 1.00 N ATOM 218 CA MET 45 59.134 10.499 -2.000 1.00 1.00 C ATOM 219 C MET 45 60.234 11.245 -1.261 1.00 1.00 C ATOM 220 O MET 45 59.988 11.841 -0.215 1.00 1.00 O ATOM 221 CB MET 45 58.847 9.184 -1.286 1.00 1.00 C ATOM 222 N PHE 46 61.452 11.210 -1.809 1.00 1.00 N ATOM 223 CA PHE 46 62.584 11.881 -1.202 1.00 1.00 C ATOM 224 C PHE 46 62.541 13.370 -1.514 1.00 1.00 C ATOM 225 O PHE 46 62.734 14.198 -0.628 1.00 1.00 O ATOM 226 CB PHE 46 63.877 11.286 -1.748 1.00 1.00 C ATOM 227 N LYS 47 62.286 13.706 -2.780 1.00 1.00 N ATOM 228 CA LYS 47 62.218 15.090 -3.207 1.00 1.00 C ATOM 229 C LYS 47 61.018 15.775 -2.569 1.00 1.00 C ATOM 230 O LYS 47 60.618 16.856 -2.996 1.00 1.00 O ATOM 231 CB LYS 47 62.084 15.145 -4.725 1.00 1.00 C ATOM 232 N LEU 48 60.442 15.140 -1.545 1.00 1.00 N ATOM 233 CA LEU 48 59.292 15.687 -0.853 1.00 1.00 C ATOM 234 C LEU 48 59.626 17.061 -0.289 1.00 1.00 C ATOM 235 O LEU 48 58.734 17.794 0.131 1.00 1.00 O ATOM 236 CB LEU 48 58.897 14.754 0.287 1.00 1.00 C ATOM 237 N VAL 49 60.916 17.406 -0.280 1.00 1.00 N ATOM 238 CA VAL 49 61.362 18.687 0.230 1.00 1.00 C ATOM 239 C VAL 49 61.054 19.788 -0.774 1.00 1.00 C ATOM 240 O VAL 49 60.723 20.906 -0.389 1.00 1.00 O ATOM 241 CB VAL 49 62.865 18.636 0.479 1.00 1.00 C ATOM 242 N GLY 50 61.163 19.466 -2.065 1.00 1.00 N ATOM 243 CA GLY 50 60.896 20.426 -3.119 1.00 1.00 C ATOM 244 C GLY 50 59.469 20.940 -3.007 1.00 1.00 C ATOM 245 O GLY 50 59.252 22.138 -2.840 1.00 1.00 O ATOM 246 N LYS 51 58.496 20.032 -3.100 1.00 1.00 N ATOM 247 CA LYS 51 57.096 20.395 -3.011 1.00 1.00 C ATOM 248 C LYS 51 56.943 21.698 -2.239 1.00 1.00 C ATOM 249 O LYS 51 55.984 22.438 -2.449 1.00 1.00 O ATOM 250 CB LYS 51 56.330 19.289 -2.294 1.00 1.00 C ATOM 251 N GLU 52 57.894 21.978 -1.343 1.00 1.00 N ATOM 252 CA GLU 52 57.862 23.187 -0.544 1.00 1.00 C ATOM 253 C GLU 52 57.282 24.335 -1.358 1.00 1.00 C ATOM 254 O GLU 52 56.494 25.125 -0.843 1.00 1.00 O ATOM 255 CB GLU 52 59.280 23.541 -0.109 1.00 1.00 C ATOM 256 N THR 53 57.676 24.425 -2.630 1.00 1.00 N ATOM 257 CA THR 53 57.196 25.474 -3.507 1.00 1.00 C ATOM 258 C THR 53 55.706 25.301 -3.763 1.00 1.00 C ATOM 259 O THR 53 54.983 26.281 -3.920 1.00 1.00 O ATOM 260 CB THR 53 57.948 25.409 -4.831 1.00 1.00 C ATOM 261 N PHE 54 55.249 24.047 -3.804 1.00 1.00 N ATOM 262 CA PHE 54 53.850 23.748 -4.040 1.00 1.00 C ATOM 263 C PHE 54 52.993 24.361 -2.942 1.00 1.00 C ATOM 264 O PHE 54 51.792 24.552 -3.124 1.00 1.00 O ATOM 265 CB PHE 54 53.651 22.237 -4.055 1.00 1.00 C ATOM 266 N TYR 55 53.613 24.668 -1.801 1.00 1.00 N ATOM 267 CA TYR 55 52.908 25.256 -0.679 1.00 1.00 C ATOM 268 C TYR 55 52.182 26.517 -1.122 1.00 1.00 C ATOM 269 O TYR 55 51.059 26.772 -0.691 1.00 1.00 O ATOM 270 CB TYR 55 53.906 25.607 0.418 1.00 1.00 C ATOM 271 N VAL 56 52.826 27.307 -1.984 1.00 1.00 N ATOM 272 CA VAL 56 52.242 28.536 -2.480 1.00 1.00 C ATOM 273 C VAL 56 51.448 28.262 -3.750 1.00 1.00 C ATOM 274 O VAL 56 50.409 28.880 -3.979 1.00 1.00 O ATOM 275 CB VAL 56 53.353 29.534 -2.787 1.00 1.00 C ATOM 276 N GLY 57 51.938 27.334 -4.574 1.00 1.00 N ATOM 277 CA GLY 57 51.275 26.981 -5.813 1.00 1.00 C ATOM 278 C GLY 57 50.086 26.076 -5.530 1.00 1.00 C ATOM 279 O GLY 57 48.977 26.343 -5.992 1.00 1.00 O ATOM 280 N ALA 58 50.318 25.004 -4.771 1.00 1.00 N ATOM 281 CA ALA 58 49.268 24.065 -4.429 1.00 1.00 C ATOM 282 C ALA 58 48.124 24.788 -3.734 1.00 1.00 C ATOM 283 O ALA 58 47.046 24.939 -4.304 1.00 1.00 O ATOM 284 CB ALA 58 49.830 22.994 -3.499 1.00 1.00 C ATOM 285 N ALA 59 48.363 25.235 -2.499 1.00 1.00 N ATOM 286 CA ALA 59 47.355 25.938 -1.732 1.00 1.00 C ATOM 287 C ALA 59 47.124 27.324 -2.319 1.00 1.00 C ATOM 288 O ALA 59 46.010 27.840 -2.273 1.00 1.00 O ATOM 289 CB ALA 59 47.823 26.074 -0.287 1.00 1.00 C ATOM 290 N LYS 60 48.181 27.922 -2.869 1.00 1.00 N ATOM 291 CA LYS 60 48.090 29.243 -3.462 1.00 1.00 C ATOM 292 C LYS 60 47.123 29.223 -4.637 1.00 1.00 C ATOM 293 O LYS 60 46.093 29.893 -4.606 1.00 1.00 O ATOM 294 CB LYS 60 49.470 29.675 -3.949 1.00 1.00 C ATOM 295 N THR 61 47.458 28.452 -5.674 1.00 1.00 N ATOM 296 CA THR 61 46.621 28.348 -6.853 1.00 1.00 C ATOM 297 C THR 61 45.481 27.371 -6.600 1.00 1.00 C ATOM 298 O THR 61 44.338 27.644 -6.961 1.00 1.00 O ATOM 299 CB THR 61 47.461 27.849 -8.025 1.00 1.00 C ATOM 300 N LYS 62 45.795 26.235 -5.977 1.00 1.00 N ATOM 301 CA LYS 62 44.799 25.224 -5.679 1.00 1.00 C ATOM 302 C LYS 62 43.783 25.770 -4.686 1.00 1.00 C ATOM 303 O LYS 62 42.599 25.444 -4.766 1.00 1.00 O ATOM 304 CB LYS 62 45.485 23.999 -5.081 1.00 1.00 C ATOM 305 N ALA 63 44.248 26.599 -3.750 1.00 1.00 N ATOM 306 CA ALA 63 43.381 27.184 -2.747 1.00 1.00 C ATOM 307 C ALA 63 42.357 28.094 -3.409 1.00 1.00 C ATOM 308 O ALA 63 41.262 28.283 -2.884 1.00 1.00 O ATOM 309 CB ALA 63 44.221 27.996 -1.767 1.00 1.00 C ATOM 310 N THR 64 42.718 28.660 -4.563 1.00 1.00 N ATOM 311 CA THR 64 41.832 29.547 -5.292 1.00 1.00 C ATOM 312 C THR 64 40.395 29.060 -5.178 1.00 1.00 C ATOM 313 O THR 64 39.487 29.852 -4.937 1.00 1.00 O ATOM 314 CB THR 64 42.243 29.578 -6.760 1.00 1.00 C ATOM 315 N ILE 65 40.192 27.752 -5.354 1.00 1.00 N ATOM 316 CA ILE 65 38.870 27.164 -5.271 1.00 1.00 C ATOM 317 C ILE 65 38.225 27.513 -3.937 1.00 1.00 C ATOM 318 O ILE 65 37.080 27.957 -3.897 1.00 1.00 O ATOM 319 CB ILE 65 38.982 25.649 -5.397 1.00 1.00 C ATOM 320 N ASN 66 38.964 27.310 -2.845 1.00 1.00 N ATOM 321 CA ASN 66 38.466 27.601 -1.516 1.00 1.00 C ATOM 322 C ASN 66 39.591 28.135 -0.641 1.00 1.00 C ATOM 323 O ASN 66 40.667 27.545 -0.582 1.00 1.00 O ATOM 324 CB ASN 66 37.904 26.327 -0.895 1.00 1.00 C ATOM 325 N ILE 67 39.338 29.254 0.039 1.00 1.00 N ATOM 326 CA ILE 67 40.326 29.864 0.907 1.00 1.00 C ATOM 327 C ILE 67 40.340 29.161 2.257 1.00 1.00 C ATOM 328 O ILE 67 41.405 28.830 2.775 1.00 1.00 O ATOM 329 CB ILE 67 39.987 31.336 1.107 1.00 1.00 C ATOM 330 N ASP 68 39.154 28.935 2.826 1.00 1.00 N ATOM 331 CA ASP 68 39.033 28.276 4.111 1.00 1.00 C ATOM 332 C ASP 68 39.611 26.870 4.032 1.00 1.00 C ATOM 333 O ASP 68 40.126 26.353 5.020 1.00 1.00 O ATOM 334 CB ASP 68 37.561 28.195 4.500 1.00 1.00 C ATOM 335 N ALA 69 39.523 26.252 2.851 1.00 1.00 N ATOM 336 CA ALA 69 40.034 24.912 2.649 1.00 1.00 C ATOM 337 C ALA 69 41.409 24.774 3.286 1.00 1.00 C ATOM 338 O ALA 69 41.882 23.662 3.509 1.00 1.00 O ATOM 339 CB ALA 69 40.143 24.635 1.152 1.00 1.00 C ATOM 340 N ILE 70 42.047 25.908 3.580 1.00 1.00 N ATOM 341 CA ILE 70 43.362 25.912 4.192 1.00 1.00 C ATOM 342 C ILE 70 43.448 24.824 5.251 1.00 1.00 C ATOM 343 O ILE 70 44.540 24.444 5.665 1.00 1.00 O ATOM 344 CB ILE 70 43.616 27.269 4.838 1.00 1.00 C ATOM 345 N SER 71 42.290 24.324 5.690 1.00 1.00 N ATOM 346 CA SER 71 42.239 23.284 6.697 1.00 1.00 C ATOM 347 C SER 71 42.876 22.008 6.165 1.00 1.00 C ATOM 348 O SER 71 43.665 21.370 6.860 1.00 1.00 O ATOM 349 CB SER 71 40.784 23.006 7.065 1.00 1.00 C ATOM 350 N GLY 72 42.532 21.637 4.931 1.00 1.00 N ATOM 351 CA GLY 72 43.070 20.443 4.312 1.00 1.00 C ATOM 352 C GLY 72 44.565 20.601 4.080 1.00 1.00 C ATOM 353 O GLY 72 45.255 19.630 3.777 1.00 1.00 O ATOM 354 N PHE 73 45.064 21.832 4.222 1.00 1.00 N ATOM 355 CA PHE 73 46.473 22.113 4.028 1.00 1.00 C ATOM 356 C PHE 73 47.299 21.408 5.094 1.00 1.00 C ATOM 357 O PHE 73 48.479 21.136 4.887 1.00 1.00 O ATOM 358 CB PHE 73 46.706 23.617 4.121 1.00 1.00 C ATOM 359 N ALA 74 46.675 21.115 6.238 1.00 1.00 N ATOM 360 CA ALA 74 47.352 20.445 7.329 1.00 1.00 C ATOM 361 C ALA 74 46.941 18.981 7.379 1.00 1.00 C ATOM 362 O ALA 74 47.691 18.142 7.875 1.00 1.00 O ATOM 363 CB ALA 74 46.979 21.119 8.645 1.00 1.00 C ATOM 364 N TYR 75 45.749 18.675 6.865 1.00 1.00 N ATOM 365 CA TYR 75 45.245 17.317 6.851 1.00 1.00 C ATOM 366 C TYR 75 46.131 16.438 5.982 1.00 1.00 C ATOM 367 O TYR 75 46.215 15.230 6.199 1.00 1.00 O ATOM 368 CB TYR 75 43.825 17.309 6.295 1.00 1.00 C ATOM 369 N GLU 76 46.795 17.046 4.997 1.00 1.00 N ATOM 370 CA GLU 76 47.671 16.319 4.100 1.00 1.00 C ATOM 371 C GLU 76 48.987 16.003 4.797 1.00 1.00 C ATOM 372 O GLU 76 49.978 15.688 4.141 1.00 1.00 O ATOM 373 CB GLU 76 47.944 17.168 2.863 1.00 1.00 C ATOM 374 N TYR 77 48.994 16.089 6.129 1.00 1.00 N ATOM 375 CA TYR 77 50.184 15.813 6.908 1.00 1.00 C ATOM 376 C TYR 77 50.926 14.618 6.325 1.00 1.00 C ATOM 377 O TYR 77 52.154 14.593 6.317 1.00 1.00 O ATOM 378 CB TYR 77 49.787 15.508 8.347 1.00 1.00 C ATOM 379 N THR 78 50.175 13.628 5.837 1.00 1.00 N ATOM 380 CA THR 78 50.760 12.438 5.255 1.00 1.00 C ATOM 381 C THR 78 51.662 12.815 4.089 1.00 1.00 C ATOM 382 O THR 78 52.838 12.459 4.073 1.00 1.00 O ATOM 383 CB THR 78 49.649 11.518 4.759 1.00 1.00 C ATOM 384 N LEU 79 51.107 13.536 3.113 1.00 1.00 N ATOM 385 CA LEU 79 51.860 13.958 1.949 1.00 1.00 C ATOM 386 C LEU 79 53.149 14.644 2.380 1.00 1.00 C ATOM 387 O LEU 79 54.200 14.422 1.786 1.00 1.00 O ATOM 388 CB LEU 79 51.021 14.929 1.128 1.00 1.00 C ATOM 389 N GLU 80 53.062 15.480 3.417 1.00 1.00 N ATOM 390 CA GLU 80 54.217 16.194 3.924 1.00 1.00 C ATOM 391 C GLU 80 55.250 15.209 4.456 1.00 1.00 C ATOM 392 O GLU 80 56.321 15.056 3.872 1.00 1.00 O ATOM 393 CB GLU 80 53.782 17.127 5.050 1.00 1.00 C ATOM 394 N ILE 81 54.923 14.541 5.563 1.00 1.00 N ATOM 395 CA ILE 81 55.820 13.577 6.168 1.00 1.00 C ATOM 396 C ILE 81 55.789 12.272 5.386 1.00 1.00 C ATOM 397 O ILE 81 56.790 11.561 5.320 1.00 1.00 O ATOM 398 CB ILE 81 55.385 13.314 7.607 1.00 1.00 C ATOM 399 N ASN 82 54.634 11.958 4.791 1.00 1.00 N ATOM 400 CA ASN 82 54.477 10.744 4.018 1.00 1.00 C ATOM 401 C ASN 82 55.545 10.671 2.935 1.00 1.00 C ATOM 402 O ASN 82 55.525 9.768 2.102 1.00 1.00 O ATOM 403 CB ASN 82 53.096 10.733 3.368 1.00 1.00 C ATOM 404 N GLY 83 56.477 11.626 2.949 1.00 1.00 N ATOM 405 CA GLY 83 57.546 11.667 1.972 1.00 1.00 C ATOM 406 C GLY 83 56.970 11.818 0.571 1.00 1.00 C ATOM 407 O GLY 83 57.576 11.373 -0.401 1.00 1.00 O ATOM 408 N LYS 84 55.797 12.446 0.473 1.00 1.00 N ATOM 409 CA LYS 84 55.145 12.654 -0.805 1.00 1.00 C ATOM 410 C LYS 84 54.959 14.142 -1.063 1.00 1.00 C ATOM 411 O LYS 84 54.866 14.929 -0.124 1.00 1.00 O ATOM 412 CB LYS 84 53.782 11.971 -0.792 1.00 1.00 C ATOM 413 N SER 85 54.909 14.525 -2.341 1.00 1.00 N ATOM 414 CA SER 85 54.737 15.914 -2.718 1.00 1.00 C ATOM 415 C SER 85 53.434 16.453 -2.146 1.00 1.00 C ATOM 416 O SER 85 52.429 15.745 -2.112 1.00 1.00 O ATOM 417 CB SER 85 54.706 16.025 -4.238 1.00 1.00 C ATOM 418 N LEU 86 53.454 17.709 -1.695 1.00 1.00 N ATOM 419 CA LEU 86 52.278 18.337 -1.125 1.00 1.00 C ATOM 420 C LEU 86 51.573 19.180 -2.179 1.00 1.00 C ATOM 421 O LEU 86 50.647 19.924 -1.862 1.00 1.00 O ATOM 422 CB LEU 86 52.695 19.229 0.039 1.00 1.00 C ATOM 423 N LYS 87 52.015 19.061 -3.432 1.00 1.00 N ATOM 424 CA LYS 87 51.427 19.810 -4.526 1.00 1.00 C ATOM 425 C LYS 87 49.919 19.610 -4.544 1.00 1.00 C ATOM 426 O LYS 87 49.166 20.570 -4.703 1.00 1.00 O ATOM 427 CB LYS 87 52.016 19.323 -5.845 1.00 1.00 C ATOM 428 N LYS 88 49.478 18.361 -4.379 1.00 1.00 N ATOM 429 CA LYS 88 48.064 18.041 -4.378 1.00 1.00 C ATOM 430 C LYS 88 47.673 17.408 -3.050 1.00 1.00 C ATOM 431 O LYS 88 46.491 17.340 -2.717 1.00 1.00 O ATOM 432 CB LYS 88 47.766 17.067 -5.511 1.00 1.00 C ATOM 433 N TYR 89 48.669 16.943 -2.292 1.00 1.00 N ATOM 434 CA TYR 89 48.428 16.318 -1.008 1.00 1.00 C ATOM 435 C TYR 89 47.186 16.915 -0.363 1.00 1.00 C ATOM 436 O TYR 89 46.296 16.184 0.067 1.00 1.00 O ATOM 437 CB TYR 89 49.631 16.548 -0.099 1.00 1.00 C ATOM 438 N MET 90 47.127 18.247 -0.295 1.00 1.00 N ATOM 439 CA MET 90 45.998 18.934 0.295 1.00 1.00 C ATOM 440 C MET 90 44.786 18.838 -0.621 1.00 1.00 C ATOM 441 O MET 90 44.228 19.856 -1.024 1.00 1.00 O ATOM 442 CB MET 90 46.354 20.402 0.509 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 442 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 98.30 34.8 178 100.0 178 ARMSMC SECONDARY STRUCTURE . . 103.34 29.7 118 100.0 118 ARMSMC SURFACE . . . . . . . . 97.29 35.2 108 100.0 108 ARMSMC BURIED . . . . . . . . 99.83 34.3 70 100.0 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 75 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 66 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 12.79 (Number of atoms: 90) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 12.79 90 100.0 90 CRMSCA CRN = ALL/NP . . . . . 0.1421 CRMSCA SECONDARY STRUCTURE . . 11.02 59 100.0 59 CRMSCA SURFACE . . . . . . . . 13.36 55 100.0 55 CRMSCA BURIED . . . . . . . . 11.84 35 100.0 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 12.84 442 100.0 442 CRMSMC SECONDARY STRUCTURE . . 11.13 293 100.0 293 CRMSMC SURFACE . . . . . . . . 13.35 269 100.0 269 CRMSMC BURIED . . . . . . . . 11.99 173 100.0 173 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.16 82 23.0 356 CRMSSC RELIABLE SIDE CHAINS . 13.16 82 25.9 316 CRMSSC SECONDARY STRUCTURE . . 11.45 57 22.6 252 CRMSSC SURFACE . . . . . . . . 13.85 49 24.0 204 CRMSSC BURIED . . . . . . . . 12.06 33 21.7 152 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 12.84 442 61.7 716 CRMSALL SECONDARY STRUCTURE . . 11.13 293 60.0 488 CRMSALL SURFACE . . . . . . . . 13.35 269 63.4 424 CRMSALL BURIED . . . . . . . . 11.99 173 59.2 292 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.100 0.824 0.412 90 100.0 90 ERRCA SECONDARY STRUCTURE . . 9.517 0.802 0.401 59 100.0 59 ERRCA SURFACE . . . . . . . . 11.567 0.824 0.412 55 100.0 55 ERRCA BURIED . . . . . . . . 10.367 0.825 0.412 35 100.0 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.135 0.826 0.413 442 100.0 442 ERRMC SECONDARY STRUCTURE . . 9.602 0.806 0.403 293 100.0 293 ERRMC SURFACE . . . . . . . . 11.550 0.826 0.413 269 100.0 269 ERRMC BURIED . . . . . . . . 10.490 0.826 0.413 173 100.0 173 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.442 0.833 0.416 82 23.0 356 ERRSC RELIABLE SIDE CHAINS . 11.442 0.833 0.416 82 25.9 316 ERRSC SECONDARY STRUCTURE . . 9.930 0.815 0.407 57 22.6 252 ERRSC SURFACE . . . . . . . . 12.026 0.836 0.418 49 24.0 204 ERRSC BURIED . . . . . . . . 10.575 0.827 0.414 33 21.7 152 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.135 0.826 0.413 442 61.7 716 ERRALL SECONDARY STRUCTURE . . 9.602 0.806 0.403 293 60.0 488 ERRALL SURFACE . . . . . . . . 11.550 0.826 0.413 269 63.4 424 ERRALL BURIED . . . . . . . . 10.490 0.826 0.413 173 59.2 292 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 1 1 1 2 29 90 90 DISTCA CA (P) 1.11 1.11 1.11 2.22 32.22 90 DISTCA CA (RMS) 0.93 0.93 0.93 3.28 7.86 DISTCA ALL (N) 1 3 6 14 141 442 716 DISTALL ALL (P) 0.14 0.42 0.84 1.96 19.69 716 DISTALL ALL (RMS) 0.93 1.52 2.13 3.53 7.81 DISTALL END of the results output