####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 90 ( 439), selected 90 , name T0540TS373_1-D1 # Molecule2: number of CA atoms 90 ( 716), selected 90 , name T0540-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0540TS373_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 26 14 - 39 5.00 15.86 LONGEST_CONTINUOUS_SEGMENT: 26 15 - 40 4.71 16.32 LONGEST_CONTINUOUS_SEGMENT: 26 16 - 41 4.71 17.06 LCS_AVERAGE: 21.35 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 10 79 - 88 1.95 22.11 LCS_AVERAGE: 7.77 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 9 17 - 25 0.96 17.70 LCS_AVERAGE: 5.83 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 90 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 4 7 11 3 4 5 6 7 8 9 10 12 13 14 16 18 22 28 31 31 36 37 40 LCS_GDT T 2 T 2 6 7 11 3 4 6 6 8 8 10 10 11 13 14 16 17 21 28 31 31 36 37 37 LCS_GDT D 3 D 3 6 7 11 3 4 6 7 8 8 10 11 11 13 14 18 21 23 28 31 31 36 37 40 LCS_GDT L 4 L 4 6 7 11 3 4 6 7 8 9 10 12 14 18 19 21 28 31 32 34 34 38 38 42 LCS_GDT V 5 V 5 6 7 11 3 4 6 7 8 9 10 12 14 22 26 28 29 31 32 36 42 45 47 50 LCS_GDT A 6 A 6 6 7 11 4 4 6 7 8 10 11 17 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT V 7 V 7 6 7 11 4 4 6 7 10 11 12 16 20 22 25 28 29 31 32 34 35 40 47 50 LCS_GDT W 8 W 8 4 5 17 4 4 4 4 5 8 9 12 13 16 21 25 26 28 30 34 35 38 39 41 LCS_GDT D 9 D 9 4 5 17 4 4 4 5 5 5 7 9 12 12 14 20 24 27 30 33 35 37 39 41 LCS_GDT V 10 V 10 4 5 17 3 4 4 5 5 5 7 9 11 13 15 20 24 27 29 33 35 37 39 41 LCS_GDT A 11 A 11 4 5 17 3 4 4 5 5 6 7 8 10 13 14 16 19 21 24 28 30 33 37 40 LCS_GDT L 12 L 12 4 5 21 3 4 4 5 6 8 12 13 14 16 20 23 24 25 26 28 31 37 37 40 LCS_GDT S 13 S 13 3 5 22 3 3 4 5 6 8 12 13 14 16 16 21 24 25 26 27 29 30 33 36 LCS_GDT D 14 D 14 5 5 26 3 3 5 5 6 8 12 14 14 16 20 23 24 27 30 33 35 38 39 41 LCS_GDT G 15 G 15 5 5 26 4 4 5 5 6 8 12 14 14 17 23 26 27 28 31 34 35 38 39 41 LCS_GDT V 16 V 16 5 5 26 4 4 5 5 6 8 12 14 18 20 24 27 29 30 32 34 35 38 39 41 LCS_GDT H 17 H 17 9 9 26 4 6 8 11 14 15 17 19 20 22 26 28 29 31 32 34 36 39 43 47 LCS_GDT K 18 K 18 9 9 26 7 7 8 9 14 15 17 19 20 22 26 28 29 31 37 39 42 45 47 50 LCS_GDT I 19 I 19 9 9 26 7 7 8 11 14 15 17 19 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT E 20 E 20 9 9 26 7 7 8 11 14 15 17 19 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT F 21 F 21 9 9 26 7 7 8 10 14 15 17 19 20 22 26 28 29 32 33 39 42 45 47 50 LCS_GDT E 22 E 22 9 9 26 7 7 8 11 14 15 17 19 20 22 26 28 29 31 33 35 39 42 45 50 LCS_GDT H 23 H 23 9 9 26 7 7 8 10 13 15 17 19 20 22 26 28 29 31 32 34 35 38 39 41 LCS_GDT G 24 G 24 9 9 26 7 7 8 11 14 15 17 19 20 22 25 28 29 31 32 34 35 38 39 41 LCS_GDT T 25 T 25 9 9 26 3 5 8 9 10 14 17 19 20 22 26 28 29 31 32 34 35 38 39 41 LCS_GDT T 26 T 26 4 9 26 3 4 4 5 10 14 16 19 20 22 26 28 29 31 32 34 35 38 39 41 LCS_GDT S 27 S 27 4 9 26 3 4 8 11 14 15 17 19 20 22 26 28 29 31 32 34 35 38 39 41 LCS_GDT G 28 G 28 8 9 26 3 7 8 11 14 15 17 19 20 22 26 28 29 31 32 34 35 38 39 41 LCS_GDT K 29 K 29 8 9 26 3 7 8 9 10 14 17 19 20 22 26 28 29 31 32 34 35 38 39 41 LCS_GDT R 30 R 30 8 9 26 3 7 8 11 14 15 17 19 20 22 26 28 29 31 33 36 39 42 45 50 LCS_GDT V 31 V 31 8 9 26 5 7 8 11 14 15 17 19 20 22 26 28 29 32 33 36 41 42 47 50 LCS_GDT V 32 V 32 8 9 26 5 7 8 11 14 14 17 19 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT Y 33 Y 33 8 9 26 5 7 8 10 14 15 17 19 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT V 34 V 34 8 9 26 5 7 8 11 14 15 17 19 20 22 26 28 29 31 35 39 42 45 47 50 LCS_GDT D 35 D 35 8 9 26 5 7 8 9 11 15 17 19 20 22 26 28 29 31 32 37 41 45 47 50 LCS_GDT G 36 G 36 3 4 26 3 3 4 5 6 8 10 16 20 22 26 28 29 31 35 39 42 45 47 50 LCS_GDT K 37 K 37 3 4 26 3 3 3 4 4 8 10 13 20 22 26 28 29 31 32 35 38 45 47 50 LCS_GDT E 38 E 38 3 5 26 3 3 4 6 7 8 10 12 12 14 17 22 29 32 37 39 42 45 47 50 LCS_GDT E 39 E 39 4 5 26 4 4 5 6 7 8 14 17 20 22 26 28 29 31 37 39 42 45 47 50 LCS_GDT I 40 I 40 4 5 26 4 4 5 6 7 8 10 12 12 16 21 23 28 31 37 39 42 45 47 50 LCS_GDT R 41 R 41 4 5 26 4 4 5 5 7 8 10 12 12 14 18 22 29 33 37 39 42 45 47 50 LCS_GDT K 42 K 42 4 5 15 4 4 5 6 7 8 9 12 12 14 18 22 30 33 37 39 42 45 47 50 LCS_GDT E 43 E 43 4 5 15 3 3 5 5 7 8 10 12 14 18 22 27 30 33 37 39 42 45 47 50 LCS_GDT W 44 W 44 4 4 15 3 3 4 4 6 8 10 12 15 17 22 27 30 33 37 39 42 45 47 50 LCS_GDT M 45 M 45 4 4 15 3 3 4 4 6 8 10 12 15 17 22 27 30 33 37 39 42 45 47 50 LCS_GDT F 46 F 46 4 4 15 3 3 4 4 6 8 10 12 15 17 22 27 30 33 37 39 42 45 47 50 LCS_GDT K 47 K 47 4 5 15 3 3 4 4 5 6 7 10 13 16 19 20 22 27 33 35 42 45 47 50 LCS_GDT L 48 L 48 4 5 15 3 3 4 4 5 6 9 11 13 16 19 23 27 27 33 39 42 45 47 50 LCS_GDT V 49 V 49 3 5 15 3 3 3 4 5 8 9 11 13 16 19 22 30 33 37 39 42 45 47 50 LCS_GDT G 50 G 50 4 5 15 1 3 4 6 7 8 9 11 13 16 19 20 22 27 30 39 42 45 47 50 LCS_GDT K 51 K 51 4 5 15 1 3 4 7 7 9 10 12 13 16 20 23 24 30 37 39 42 45 47 50 LCS_GDT E 52 E 52 4 5 13 3 3 4 5 6 6 10 12 13 15 20 23 29 31 33 36 41 44 47 50 LCS_GDT T 53 T 53 4 5 13 3 3 4 7 9 10 12 13 14 16 21 24 29 31 33 36 41 42 47 50 LCS_GDT F 54 F 54 4 5 13 3 3 4 5 6 10 12 13 17 20 22 24 29 31 32 36 41 42 45 50 LCS_GDT Y 55 Y 55 4 5 13 0 3 4 5 6 6 10 12 17 20 22 24 29 31 33 36 41 42 45 50 LCS_GDT V 56 V 56 3 5 13 0 3 3 5 6 6 8 9 11 13 17 19 23 24 28 31 33 34 38 44 LCS_GDT G 57 G 57 3 5 13 3 3 4 4 5 6 7 9 10 12 17 17 20 22 23 24 28 30 33 35 LCS_GDT A 58 A 58 3 5 13 3 3 4 4 5 6 7 9 10 10 12 14 14 17 20 22 24 26 29 31 LCS_GDT A 59 A 59 3 5 13 3 3 4 4 5 6 6 7 10 12 13 15 18 19 23 25 29 32 35 38 LCS_GDT K 60 K 60 3 6 13 3 3 3 4 5 6 8 9 12 12 17 18 22 25 26 30 35 40 45 50 LCS_GDT T 61 T 61 5 7 15 3 5 5 6 7 11 12 14 15 18 21 21 25 28 33 36 41 42 45 50 LCS_GDT K 62 K 62 5 8 15 4 5 6 7 8 9 11 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT A 63 A 63 5 8 15 4 5 6 6 7 10 12 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT T 64 T 64 5 8 15 4 5 6 6 7 9 10 13 16 19 22 27 30 33 37 39 42 45 47 50 LCS_GDT I 65 I 65 5 8 15 4 5 6 6 8 10 14 16 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT N 66 N 66 5 8 18 3 5 6 6 8 8 10 11 17 20 21 26 27 28 31 34 35 40 44 46 LCS_GDT I 67 I 67 5 8 19 3 5 6 6 8 8 9 11 12 13 19 21 22 25 28 34 36 42 45 50 LCS_GDT D 68 D 68 5 8 19 3 5 5 6 7 8 9 11 12 13 16 21 22 25 26 28 32 35 39 43 LCS_GDT A 69 A 69 5 8 19 3 4 5 6 7 8 9 11 11 14 19 21 22 25 26 29 35 42 45 50 LCS_GDT I 70 I 70 4 5 19 4 4 4 5 5 8 9 11 13 14 15 16 27 27 29 34 38 42 45 50 LCS_GDT S 71 S 71 4 6 19 4 4 5 5 5 8 8 9 11 14 15 23 27 27 33 36 39 42 45 50 LCS_GDT G 72 G 72 4 6 19 4 4 4 5 6 8 9 11 13 16 19 23 27 27 33 36 39 42 45 50 LCS_GDT F 73 F 73 4 6 19 4 4 5 6 8 8 9 11 13 16 19 23 27 27 33 36 39 42 45 50 LCS_GDT A 74 A 74 4 6 19 3 4 5 6 8 8 9 12 14 17 22 27 30 33 37 39 42 45 47 50 LCS_GDT Y 75 Y 75 4 8 19 3 4 6 6 8 10 12 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT E 76 E 76 7 9 19 4 5 7 8 10 11 12 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT Y 77 Y 77 7 9 19 4 5 7 8 10 11 12 14 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT T 78 T 78 7 9 19 4 5 7 8 10 11 12 14 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT L 79 L 79 7 10 19 4 5 7 8 10 11 12 14 17 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT E 80 E 80 7 10 19 3 5 7 8 10 11 12 14 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT I 81 I 81 7 10 19 3 5 7 8 10 11 12 14 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT N 82 N 82 7 10 19 3 5 7 8 10 11 12 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT G 83 G 83 4 10 19 3 4 6 8 9 10 12 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT K 84 K 84 4 10 19 3 4 6 8 9 10 12 15 18 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT S 85 S 85 4 10 19 4 4 6 8 10 11 12 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT L 86 L 86 4 10 19 4 4 6 8 10 11 15 17 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT K 87 K 87 4 10 19 4 4 6 8 9 10 12 16 20 22 26 28 30 33 37 39 42 45 47 50 LCS_GDT K 88 K 88 4 10 18 4 4 6 8 9 10 12 15 19 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT Y 89 Y 89 4 4 18 3 4 4 7 8 8 12 14 18 22 23 27 30 33 37 39 42 45 47 50 LCS_GDT M 90 M 90 4 4 18 3 4 4 7 8 8 10 10 17 21 23 27 30 33 37 39 42 45 47 50 LCS_AVERAGE LCS_A: 11.65 ( 5.83 7.77 21.35 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 7 7 8 11 14 15 17 19 20 22 26 28 30 33 37 39 42 45 47 50 GDT PERCENT_AT 7.78 7.78 8.89 12.22 15.56 16.67 18.89 21.11 22.22 24.44 28.89 31.11 33.33 36.67 41.11 43.33 46.67 50.00 52.22 55.56 GDT RMS_LOCAL 0.35 0.35 0.63 1.35 1.71 2.00 2.17 2.59 2.95 3.18 3.74 7.14 5.14 5.33 5.76 5.92 6.14 6.44 6.65 6.94 GDT RMS_ALL_AT 17.75 17.75 17.45 18.96 18.95 18.31 18.30 17.42 15.40 15.47 15.56 15.56 14.23 14.23 14.11 14.18 14.14 13.99 13.91 13.82 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 9.924 4 0.030 0.488 9.952 0.595 0.476 LGA T 2 T 2 10.796 2 0.607 0.548 11.611 0.357 0.204 LGA D 3 D 3 10.676 3 0.095 0.087 12.109 0.476 0.238 LGA L 4 L 4 7.478 3 0.052 0.053 8.663 6.190 4.345 LGA V 5 V 5 8.152 2 0.653 0.585 8.649 4.881 3.469 LGA A 6 A 6 8.251 0 0.418 0.488 8.769 4.881 4.857 LGA V 7 V 7 9.735 2 0.111 0.115 12.807 0.833 0.544 LGA W 8 W 8 15.849 9 0.098 0.141 17.084 0.000 0.000 LGA D 9 D 9 19.871 3 0.581 0.527 22.502 0.000 0.000 LGA V 10 V 10 20.069 2 0.211 0.306 20.556 0.000 0.000 LGA A 11 A 11 19.029 0 0.047 0.069 20.858 0.000 0.000 LGA L 12 L 12 17.457 3 0.544 0.601 18.605 0.000 0.000 LGA S 13 S 13 21.238 1 0.173 0.173 22.897 0.000 0.000 LGA D 14 D 14 14.665 3 0.218 0.202 16.792 0.000 0.000 LGA G 15 G 15 12.164 0 0.519 0.519 13.329 0.000 0.000 LGA V 16 V 16 8.206 2 0.073 0.148 9.631 9.881 5.850 LGA H 17 H 17 2.575 5 0.209 0.244 4.637 62.857 30.143 LGA K 18 K 18 2.744 4 0.330 0.351 4.983 65.357 32.540 LGA I 19 I 19 1.387 3 0.059 0.062 4.317 78.095 43.690 LGA E 20 E 20 2.463 4 0.122 0.162 5.462 65.595 32.063 LGA F 21 F 21 1.244 6 0.045 0.047 3.701 79.881 32.987 LGA E 22 E 22 3.082 4 0.047 0.062 5.955 52.262 25.608 LGA H 23 H 23 1.796 5 0.087 0.103 3.316 77.381 35.952 LGA G 24 G 24 2.860 0 0.499 0.499 2.860 65.119 65.119 LGA T 25 T 25 3.585 2 0.107 0.124 5.497 47.024 30.612 LGA T 26 T 26 4.482 2 0.611 0.621 6.311 40.476 25.578 LGA S 27 S 27 0.996 1 0.648 0.582 2.679 81.548 63.889 LGA G 28 G 28 2.452 0 0.705 0.705 2.452 77.381 77.381 LGA K 29 K 29 3.173 4 0.166 0.205 6.067 50.476 24.339 LGA R 30 R 30 2.046 6 0.118 0.133 4.876 70.238 28.398 LGA V 31 V 31 1.555 2 0.046 0.046 3.753 77.738 50.612 LGA V 32 V 32 3.526 2 0.034 0.033 6.587 47.262 28.912 LGA Y 33 Y 33 1.153 7 0.037 0.047 3.612 75.833 28.889 LGA V 34 V 34 2.506 2 0.038 0.044 5.438 65.357 41.088 LGA D 35 D 35 2.442 3 0.475 0.462 3.486 63.333 37.917 LGA G 36 G 36 6.777 0 0.432 0.432 10.125 12.976 12.976 LGA K 37 K 37 7.405 4 0.484 0.471 9.368 6.905 3.862 LGA E 38 E 38 10.007 4 0.036 0.115 12.208 4.643 2.063 LGA E 39 E 39 5.950 4 0.286 0.269 7.770 17.976 11.481 LGA I 40 I 40 9.652 3 0.127 0.144 12.384 1.310 0.655 LGA R 41 R 41 12.695 6 0.053 0.050 13.679 0.000 0.000 LGA K 42 K 42 17.432 4 0.616 0.557 20.021 0.000 0.000 LGA E 43 E 43 15.752 4 0.023 0.035 16.310 0.000 0.000 LGA W 44 W 44 16.595 9 0.622 0.589 17.507 0.000 0.000 LGA M 45 M 45 20.567 3 0.630 0.608 21.738 0.000 0.000 LGA F 46 F 46 24.852 6 0.026 0.059 26.777 0.000 0.000 LGA K 47 K 47 22.107 4 0.580 0.568 22.738 0.000 0.000 LGA L 48 L 48 18.978 3 0.028 0.044 20.607 0.000 0.000 LGA V 49 V 49 23.983 2 0.650 0.594 26.603 0.000 0.000 LGA G 50 G 50 25.011 0 0.533 0.533 25.279 0.000 0.000 LGA K 51 K 51 21.787 4 0.232 0.309 22.385 0.000 0.000 LGA E 52 E 52 22.517 4 0.657 0.594 23.197 0.000 0.000 LGA T 53 T 53 22.708 2 0.132 0.163 24.242 0.000 0.000 LGA F 54 F 54 19.115 6 0.207 0.301 21.131 0.000 0.000 LGA Y 55 Y 55 19.672 7 0.603 0.543 19.672 0.000 0.000 LGA V 56 V 56 19.480 2 0.599 0.539 23.569 0.000 0.000 LGA G 57 G 57 25.110 0 0.598 0.598 28.114 0.000 0.000 LGA A 58 A 58 28.565 0 0.269 0.264 30.832 0.000 0.000 LGA A 59 A 59 28.570 0 0.162 0.151 29.783 0.000 0.000 LGA K 60 K 60 29.774 4 0.422 0.426 31.586 0.000 0.000 LGA T 61 T 61 29.683 2 0.378 0.498 29.742 0.000 0.000 LGA K 62 K 62 24.688 4 0.128 0.152 26.823 0.000 0.000 LGA A 63 A 63 17.970 0 0.104 0.095 20.429 0.000 0.000 LGA T 64 T 64 12.682 2 0.093 0.120 14.205 0.000 0.000 LGA I 65 I 65 9.819 3 0.062 0.062 12.366 0.119 0.060 LGA N 66 N 66 12.015 3 0.150 0.198 12.834 0.000 0.000 LGA I 67 I 67 16.311 3 0.031 0.030 19.969 0.000 0.000 LGA D 68 D 68 21.871 3 0.135 0.175 23.531 0.000 0.000 LGA A 69 A 69 27.187 0 0.444 0.467 29.656 0.000 0.000 LGA I 70 I 70 25.811 3 0.683 0.638 27.836 0.000 0.000 LGA S 71 S 71 30.745 1 0.130 0.189 31.672 0.000 0.000 LGA G 72 G 72 32.802 0 0.415 0.415 32.802 0.000 0.000 LGA F 73 F 73 29.717 6 0.244 0.238 30.901 0.000 0.000 LGA A 74 A 74 24.459 0 0.230 0.301 26.599 0.000 0.000 LGA Y 75 Y 75 25.791 7 0.129 0.198 26.886 0.000 0.000 LGA E 76 E 76 24.477 4 0.464 0.505 26.519 0.000 0.000 LGA Y 77 Y 77 19.947 7 0.063 0.064 21.211 0.000 0.000 LGA T 78 T 78 20.658 2 0.032 0.036 23.144 0.000 0.000 LGA L 79 L 79 18.790 3 0.034 0.039 19.271 0.000 0.000 LGA E 80 E 80 21.679 4 0.045 0.065 23.706 0.000 0.000 LGA I 81 I 81 21.952 3 0.062 0.084 23.170 0.000 0.000 LGA N 82 N 82 26.730 3 0.276 0.270 28.390 0.000 0.000 LGA G 83 G 83 21.746 0 0.533 0.533 23.342 0.000 0.000 LGA K 84 K 84 16.408 4 0.209 0.255 18.396 0.000 0.000 LGA S 85 S 85 14.778 1 0.070 0.129 16.176 0.000 0.000 LGA L 86 L 86 10.824 3 0.079 0.122 12.258 0.000 0.000 LGA K 87 K 87 10.362 4 0.026 0.035 10.362 0.476 0.212 LGA K 88 K 88 12.238 4 0.504 0.515 15.299 0.000 0.000 LGA Y 89 Y 89 14.077 7 0.206 0.261 14.431 0.000 0.000 LGA M 90 M 90 16.663 5 - - 16.663 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 90 360 357 99.17 716 439 61.31 90 SUMMARY(RMSD_GDC): 13.261 13.090 13.187 14.619 8.745 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 90 90 4.0 19 2.59 21.111 17.619 0.707 LGA_LOCAL RMSD: 2.588 Number of atoms: 19 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 17.420 Number of assigned atoms: 90 Std_ASGN_ATOMS RMSD: 13.261 Standard rmsd on all 90 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.428041 * X + -0.505650 * Y + 0.749065 * Z + 38.709305 Y_new = -0.020020 * X + -0.823324 * Y + -0.567218 * Z + 10.985413 Z_new = 0.903538 * X + -0.257789 * Y + 0.342293 * Z + 2.475840 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.094855 -1.127954 -0.645497 [DEG: -177.3221 -64.6270 -36.9843 ] ZXZ: 0.922681 1.221440 1.848723 [DEG: 52.8657 69.9833 105.9240 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0540TS373_1-D1 REMARK 2: T0540-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0540TS373_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 90 90 4.0 19 2.59 17.619 13.26 REMARK ---------------------------------------------------------- MOLECULE T0540TS373_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0540 REMARK MODEL 1 REMARK PARENT N/A ATOM 1 CA MET 1 38.432 0.374 0.208 1.00 0.00 C ATOM 1 C MET 1 36.949 0.176 0.535 1.00 0.00 C ATOM 1 O MET 1 36.077 0.954 0.123 1.00 0.00 O ATOM 1 CB MET 1 39.247 0.265 1.510 1.00 0.00 C ATOM 2 N THR 2 36.699 -0.882 1.283 1.00 0.00 N ATOM 2 CA THR 2 35.344 -1.258 1.714 1.00 0.00 C ATOM 2 C THR 2 34.796 -0.251 2.728 1.00 0.00 C ATOM 2 O THR 2 35.240 -0.174 3.881 1.00 0.00 O ATOM 2 CB THR 2 35.444 -2.621 2.423 1.00 0.00 C ATOM 3 N ASP 3 33.826 0.513 2.260 1.00 0.00 N ATOM 3 CA ASP 3 33.159 1.548 3.065 1.00 0.00 C ATOM 3 C ASP 3 34.098 2.683 3.483 1.00 0.00 C ATOM 3 O ASP 3 34.138 3.108 4.645 1.00 0.00 O ATOM 3 CB ASP 3 32.668 0.865 4.358 1.00 0.00 C ATOM 4 N LEU 4 34.847 3.153 2.504 1.00 0.00 N ATOM 4 CA LEU 4 35.820 4.244 2.685 1.00 0.00 C ATOM 4 C LEU 4 35.816 5.159 1.457 1.00 0.00 C ATOM 4 O LEU 4 35.797 4.708 0.304 1.00 0.00 O ATOM 4 CB LEU 4 37.218 3.614 2.814 1.00 0.00 C ATOM 5 N VAL 5 35.835 6.447 1.745 1.00 0.00 N ATOM 5 CA VAL 5 35.836 7.499 0.716 1.00 0.00 C ATOM 5 C VAL 5 37.020 8.436 0.958 1.00 0.00 C ATOM 5 O VAL 5 37.269 8.906 2.077 1.00 0.00 O ATOM 5 CB VAL 5 34.574 8.369 0.851 1.00 0.00 C ATOM 6 N ALA 6 37.735 8.690 -0.123 1.00 0.00 N ATOM 6 CA ALA 6 38.918 9.566 -0.115 1.00 0.00 C ATOM 6 C ALA 6 40.164 8.845 0.404 1.00 0.00 C ATOM 6 O ALA 6 40.877 8.154 -0.337 1.00 0.00 O ATOM 6 CB ALA 6 38.612 10.729 0.848 1.00 0.00 C ATOM 7 N VAL 7 40.397 9.030 1.689 1.00 0.00 N ATOM 7 CA VAL 7 41.541 8.430 2.392 1.00 0.00 C ATOM 7 C VAL 7 41.116 7.408 3.451 1.00 0.00 C ATOM 7 O VAL 7 40.297 7.684 4.337 1.00 0.00 O ATOM 7 CB VAL 7 42.296 9.548 3.136 1.00 0.00 C ATOM 8 N TRP 8 41.698 6.230 3.326 1.00 0.00 N ATOM 8 CA TRP 8 41.434 5.105 4.235 1.00 0.00 C ATOM 8 C TRP 8 42.793 4.508 4.609 1.00 0.00 C ATOM 8 O TRP 8 43.504 3.922 3.779 1.00 0.00 O ATOM 8 CB TRP 8 40.622 4.057 3.452 1.00 0.00 C ATOM 9 N ASP 9 43.127 4.678 5.874 1.00 0.00 N ATOM 9 CA ASP 9 44.390 4.185 6.445 1.00 0.00 C ATOM 9 C ASP 9 45.463 4.488 5.396 1.00 0.00 C ATOM 9 O ASP 9 46.650 4.169 5.560 1.00 0.00 O ATOM 9 CB ASP 9 44.279 2.659 6.621 1.00 0.00 C ATOM 10 N VAL 10 45.008 5.110 4.326 1.00 0.00 N ATOM 10 CA VAL 10 45.869 5.496 3.196 1.00 0.00 C ATOM 10 C VAL 10 45.355 6.792 2.564 1.00 0.00 C ATOM 10 O VAL 10 44.212 6.889 2.097 1.00 0.00 O ATOM 10 CB VAL 10 45.784 4.390 2.127 1.00 0.00 C ATOM 11 N ALA 11 46.235 7.776 2.567 1.00 0.00 N ATOM 11 CA ALA 11 45.952 9.108 2.011 1.00 0.00 C ATOM 11 C ALA 11 47.170 9.551 1.199 1.00 0.00 C ATOM 11 O ALA 11 48.326 9.422 1.627 1.00 0.00 O ATOM 11 CB ALA 11 45.725 10.114 3.154 1.00 0.00 C ATOM 12 N LEU 12 46.871 10.073 0.026 1.00 0.00 N ATOM 12 CA LEU 12 47.889 10.565 -0.915 1.00 0.00 C ATOM 12 C LEU 12 48.626 9.390 -1.566 1.00 0.00 C ATOM 12 O LEU 12 49.858 9.372 -1.680 1.00 0.00 O ATOM 12 CB LEU 12 48.936 11.351 -0.103 1.00 0.00 C ATOM 13 N SER 13 47.837 8.420 -1.986 1.00 0.00 N ATOM 13 CA SER 13 48.337 7.199 -2.641 1.00 0.00 C ATOM 13 C SER 13 48.802 7.609 -4.040 1.00 0.00 C ATOM 13 O SER 13 49.328 6.803 -4.820 1.00 0.00 O ATOM 13 CB SER 13 47.165 6.214 -2.785 1.00 0.00 C ATOM 14 N ASP 14 48.591 8.881 -4.324 1.00 0.00 N ATOM 14 CA ASP 14 48.962 9.486 -5.613 1.00 0.00 C ATOM 14 C ASP 14 47.939 9.014 -6.647 1.00 0.00 C ATOM 14 O ASP 14 48.282 8.502 -7.723 1.00 0.00 O ATOM 14 CB ASP 14 50.345 8.939 -6.013 1.00 0.00 C ATOM 15 N GLY 15 46.683 9.204 -6.286 1.00 0.00 N ATOM 15 CA GLY 15 45.542 8.824 -7.130 1.00 0.00 C ATOM 15 C GLY 15 44.509 9.953 -7.100 1.00 0.00 C ATOM 15 O GLY 15 43.982 10.389 -8.134 1.00 0.00 O ATOM 16 N VAL 16 44.243 10.405 -5.888 1.00 0.00 N ATOM 16 CA VAL 16 43.282 11.488 -5.631 1.00 0.00 C ATOM 16 C VAL 16 44.046 12.811 -5.535 1.00 0.00 C ATOM 16 O VAL 16 45.110 12.911 -4.908 1.00 0.00 O ATOM 16 CB VAL 16 42.637 11.289 -4.246 1.00 0.00 C ATOM 17 N HIS 17 43.469 13.811 -6.175 1.00 0.00 N ATOM 17 CA HIS 17 44.034 15.169 -6.213 1.00 0.00 C ATOM 17 C HIS 17 42.960 16.204 -5.874 1.00 0.00 C ATOM 17 O HIS 17 42.020 16.452 -6.642 1.00 0.00 O ATOM 17 CB HIS 17 44.533 15.421 -7.648 1.00 0.00 C ATOM 18 N LYS 18 43.135 16.796 -4.706 1.00 0.00 N ATOM 18 CA LYS 18 42.221 17.822 -4.184 1.00 0.00 C ATOM 18 C LYS 18 40.916 17.216 -3.663 1.00 0.00 C ATOM 18 O LYS 18 39.820 17.469 -4.184 1.00 0.00 O ATOM 18 CB LYS 18 41.875 18.780 -5.340 1.00 0.00 C ATOM 19 N ILE 19 41.073 16.414 -2.626 1.00 0.00 N ATOM 19 CA ILE 19 39.952 15.727 -1.969 1.00 0.00 C ATOM 19 C ILE 19 39.767 16.279 -0.555 1.00 0.00 C ATOM 19 O ILE 19 40.702 16.328 0.259 1.00 0.00 O ATOM 19 CB ILE 19 40.320 14.235 -1.876 1.00 0.00 C ATOM 20 N GLU 20 38.539 16.691 -0.295 1.00 0.00 N ATOM 20 CA GLU 20 38.143 17.257 1.002 1.00 0.00 C ATOM 20 C GLU 20 37.002 16.470 1.664 1.00 0.00 C ATOM 20 O GLU 20 35.904 16.322 1.116 1.00 0.00 O ATOM 20 CB GLU 20 37.596 18.660 0.666 1.00 0.00 C ATOM 21 N PHE 21 37.299 15.978 2.851 1.00 0.00 N ATOM 21 CA PHE 21 36.350 15.191 3.661 1.00 0.00 C ATOM 21 C PHE 21 36.205 15.780 5.067 1.00 0.00 C ATOM 21 O PHE 21 37.165 15.868 5.842 1.00 0.00 O ATOM 21 CB PHE 21 36.880 13.751 3.775 1.00 0.00 C ATOM 22 N GLU 22 34.982 16.179 5.362 1.00 0.00 N ATOM 22 CA GLU 22 34.621 16.775 6.657 1.00 0.00 C ATOM 22 C GLU 22 33.411 16.033 7.235 1.00 0.00 C ATOM 22 O GLU 22 32.392 15.822 6.566 1.00 0.00 O ATOM 22 CB GLU 22 34.176 18.223 6.380 1.00 0.00 C ATOM 23 N HIS 23 33.558 15.649 8.489 1.00 0.00 N ATOM 23 CA HIS 23 32.519 14.921 9.237 1.00 0.00 C ATOM 23 C HIS 23 32.427 15.375 10.694 1.00 0.00 C ATOM 23 O HIS 23 33.437 15.625 11.368 1.00 0.00 O ATOM 23 CB HIS 23 32.883 13.426 9.197 1.00 0.00 C ATOM 24 N GLY 24 31.192 15.474 11.150 1.00 0.00 N ATOM 24 CA GLY 24 30.877 15.895 12.522 1.00 0.00 C ATOM 24 C GLY 24 30.734 14.638 13.382 1.00 0.00 C ATOM 24 O GLY 24 30.253 14.674 14.523 1.00 0.00 O ATOM 25 N THR 25 31.166 13.535 12.799 1.00 0.00 N ATOM 25 CA THR 25 31.124 12.216 13.446 1.00 0.00 C ATOM 25 C THR 25 32.008 12.264 14.694 1.00 0.00 C ATOM 25 O THR 25 31.782 11.559 15.687 1.00 0.00 O ATOM 25 CB THR 25 31.721 11.177 12.479 1.00 0.00 C ATOM 26 N THR 26 33.015 13.114 14.607 1.00 0.00 N ATOM 26 CA THR 26 33.988 13.319 15.691 1.00 0.00 C ATOM 26 C THR 26 33.856 14.774 16.148 1.00 0.00 C ATOM 26 O THR 26 33.650 15.698 15.348 1.00 0.00 O ATOM 26 CB THR 26 35.414 13.093 15.160 1.00 0.00 C ATOM 27 N SER 27 33.984 14.942 17.451 1.00 0.00 N ATOM 27 CA SER 27 33.894 16.258 18.103 1.00 0.00 C ATOM 27 C SER 27 35.087 17.109 17.662 1.00 0.00 C ATOM 27 O SER 27 36.239 16.654 17.617 1.00 0.00 O ATOM 27 CB SER 27 34.003 16.047 19.623 1.00 0.00 C ATOM 28 N GLY 28 34.773 18.350 17.340 1.00 0.00 N ATOM 28 CA GLY 28 35.766 19.339 16.890 1.00 0.00 C ATOM 28 C GLY 28 35.726 19.372 15.360 1.00 0.00 C ATOM 28 O GLY 28 34.704 19.081 14.724 1.00 0.00 O ATOM 29 N LYS 29 36.864 19.736 14.799 1.00 0.00 N ATOM 29 CA LYS 29 37.045 19.835 13.342 1.00 0.00 C ATOM 29 C LYS 29 38.129 18.842 12.915 1.00 0.00 C ATOM 29 O LYS 29 39.334 19.080 13.070 1.00 0.00 O ATOM 29 CB LYS 29 37.549 21.254 13.024 1.00 0.00 C ATOM 30 N ARG 30 37.661 17.733 12.374 1.00 0.00 N ATOM 30 CA ARG 30 38.529 16.646 11.894 1.00 0.00 C ATOM 30 C ARG 30 38.173 16.470 10.416 1.00 0.00 C ATOM 30 O ARG 30 37.112 15.944 10.055 1.00 0.00 O ATOM 30 CB ARG 30 38.191 15.351 12.654 1.00 0.00 C ATOM 31 N VAL 31 39.090 16.923 9.582 1.00 0.00 N ATOM 31 CA VAL 31 38.952 16.855 8.119 1.00 0.00 C ATOM 31 C VAL 31 40.219 16.273 7.490 1.00 0.00 C ATOM 31 O VAL 31 41.352 16.605 7.867 1.00 0.00 O ATOM 31 CB VAL 31 38.790 18.296 7.600 1.00 0.00 C ATOM 32 N VAL 32 39.990 15.401 6.526 1.00 0.00 N ATOM 32 CA VAL 32 41.066 14.722 5.787 1.00 0.00 C ATOM 32 C VAL 32 40.994 15.208 4.338 1.00 0.00 C ATOM 32 O VAL 32 39.995 15.017 3.629 1.00 0.00 O ATOM 32 CB VAL 32 40.851 13.198 5.764 1.00 0.00 C ATOM 33 N TYR 33 42.079 15.839 3.928 1.00 0.00 N ATOM 33 CA TYR 33 42.223 16.389 2.572 1.00 0.00 C ATOM 33 C TYR 33 43.558 15.877 2.029 1.00 0.00 C ATOM 33 O TYR 33 44.607 15.953 2.686 1.00 0.00 O ATOM 33 CB TYR 33 42.267 17.926 2.659 1.00 0.00 C ATOM 34 N VAL 34 43.480 15.361 0.817 1.00 0.00 N ATOM 34 CA VAL 34 44.644 14.811 0.106 1.00 0.00 C ATOM 34 C VAL 34 44.797 15.548 -1.226 1.00 0.00 C ATOM 34 O VAL 34 43.908 15.540 -2.088 1.00 0.00 O ATOM 34 CB VAL 34 44.415 13.304 -0.115 1.00 0.00 C ATOM 35 N ASP 35 45.948 16.180 -1.361 1.00 0.00 N ATOM 35 CA ASP 35 46.304 16.951 -2.562 1.00 0.00 C ATOM 35 C ASP 35 47.489 16.270 -3.253 1.00 0.00 C ATOM 35 O ASP 35 48.454 15.825 -2.617 1.00 0.00 O ATOM 35 CB ASP 35 46.761 18.353 -2.119 1.00 0.00 C ATOM 36 N GLY 36 47.381 16.205 -4.567 1.00 0.00 N ATOM 36 CA GLY 36 48.407 15.593 -5.429 1.00 0.00 C ATOM 36 C GLY 36 49.747 16.311 -5.259 1.00 0.00 C ATOM 36 O GLY 36 50.105 17.220 -6.021 1.00 0.00 O ATOM 37 N LYS 37 50.468 15.874 -4.244 1.00 0.00 N ATOM 37 CA LYS 37 51.789 16.425 -3.902 1.00 0.00 C ATOM 37 C LYS 37 51.630 17.944 -3.804 1.00 0.00 C ATOM 37 O LYS 37 52.566 18.719 -4.050 1.00 0.00 O ATOM 37 CB LYS 37 52.763 16.110 -5.052 1.00 0.00 C ATOM 38 N GLU 38 50.424 18.337 -3.440 1.00 0.00 N ATOM 38 CA GLU 38 50.054 19.753 -3.285 1.00 0.00 C ATOM 38 C GLU 38 49.511 19.970 -1.870 1.00 0.00 C ATOM 38 O GLU 38 48.526 19.355 -1.444 1.00 0.00 O ATOM 38 CB GLU 38 48.917 20.062 -4.276 1.00 0.00 C ATOM 39 N GLU 39 50.184 20.861 -1.166 1.00 0.00 N ATOM 39 CA GLU 39 49.835 21.223 0.216 1.00 0.00 C ATOM 39 C GLU 39 49.733 19.933 1.037 1.00 0.00 C ATOM 39 O GLU 39 48.988 19.838 2.021 1.00 0.00 O ATOM 39 CB GLU 39 48.440 21.875 0.186 1.00 0.00 C ATOM 40 N ILE 40 50.502 18.953 0.600 1.00 0.00 N ATOM 40 CA ILE 40 50.559 17.629 1.240 1.00 0.00 C ATOM 40 C ILE 40 52.010 17.330 1.622 1.00 0.00 C ATOM 40 O ILE 40 52.903 17.215 0.769 1.00 0.00 O ATOM 40 CB ILE 40 50.134 16.583 0.195 1.00 0.00 C ATOM 41 N ARG 41 52.212 17.211 2.921 1.00 0.00 N ATOM 41 CA ARG 41 53.530 16.925 3.505 1.00 0.00 C ATOM 41 C ARG 41 53.344 15.555 4.160 1.00 0.00 C ATOM 41 O ARG 41 52.407 15.320 4.935 1.00 0.00 O ATOM 41 CB ARG 41 53.886 18.001 4.546 1.00 0.00 C ATOM 42 N LYS 42 54.264 14.671 3.824 1.00 0.00 N ATOM 42 CA LYS 42 54.277 13.294 4.337 1.00 0.00 C ATOM 42 C LYS 42 54.165 13.242 5.865 1.00 0.00 C ATOM 42 O LYS 42 54.008 12.177 6.475 1.00 0.00 O ATOM 42 CB LYS 42 55.623 12.656 3.957 1.00 0.00 C ATOM 43 N GLU 43 54.248 14.421 6.453 1.00 0.00 N ATOM 43 CA GLU 43 54.165 14.600 7.912 1.00 0.00 C ATOM 43 C GLU 43 52.716 14.791 8.367 1.00 0.00 C ATOM 43 O GLU 43 52.316 14.388 9.468 1.00 0.00 O ATOM 43 CB GLU 43 54.942 15.875 8.283 1.00 0.00 C ATOM 44 N TRP 44 51.954 15.414 7.488 1.00 0.00 N ATOM 44 CA TRP 44 50.532 15.702 7.721 1.00 0.00 C ATOM 44 C TRP 44 49.666 14.521 7.273 1.00 0.00 C ATOM 44 O TRP 44 48.691 14.135 7.933 1.00 0.00 O ATOM 44 CB TRP 44 50.149 16.919 6.863 1.00 0.00 C ATOM 45 N MET 45 50.054 13.969 6.139 1.00 0.00 N ATOM 45 CA MET 45 49.364 12.823 5.527 1.00 0.00 C ATOM 45 C MET 45 49.339 11.614 6.468 1.00 0.00 C ATOM 45 O MET 45 48.330 10.909 6.605 1.00 0.00 O ATOM 45 CB MET 45 50.138 12.399 4.268 1.00 0.00 C ATOM 46 N PHE 46 50.476 11.406 7.105 1.00 0.00 N ATOM 46 CA PHE 46 50.672 10.301 8.056 1.00 0.00 C ATOM 46 C PHE 46 49.665 10.356 9.208 1.00 0.00 C ATOM 46 O PHE 46 49.067 9.347 9.607 1.00 0.00 O ATOM 46 CB PHE 46 52.076 10.464 8.668 1.00 0.00 C ATOM 47 N LYS 47 49.502 11.560 9.723 1.00 0.00 N ATOM 47 CA LYS 47 48.583 11.839 10.837 1.00 0.00 C ATOM 47 C LYS 47 47.136 11.489 10.479 1.00 0.00 C ATOM 47 O LYS 47 46.411 10.836 11.241 1.00 0.00 O ATOM 47 CB LYS 47 48.615 13.352 11.127 1.00 0.00 C ATOM 48 N LEU 48 46.749 11.945 9.302 1.00 0.00 N ATOM 48 CA LEU 48 45.400 11.725 8.761 1.00 0.00 C ATOM 48 C LEU 48 45.114 10.226 8.640 1.00 0.00 C ATOM 48 O LEU 48 44.016 9.740 8.950 1.00 0.00 O ATOM 48 CB LEU 48 45.357 12.304 7.335 1.00 0.00 C ATOM 49 N VAL 49 46.130 9.520 8.181 1.00 0.00 N ATOM 49 CA VAL 49 46.072 8.065 7.986 1.00 0.00 C ATOM 49 C VAL 49 46.431 7.375 9.306 1.00 0.00 C ATOM 49 O VAL 49 46.096 6.208 9.549 1.00 0.00 O ATOM 49 CB VAL 49 47.110 7.705 6.907 1.00 0.00 C ATOM 50 N GLY 50 47.119 8.132 10.139 1.00 0.00 N ATOM 50 CA GLY 50 47.569 7.669 11.461 1.00 0.00 C ATOM 50 C GLY 50 46.281 7.386 12.236 1.00 0.00 C ATOM 50 O GLY 50 46.233 6.545 13.145 1.00 0.00 O ATOM 51 N LYS 51 45.250 8.112 11.846 1.00 0.00 N ATOM 51 CA LYS 51 43.917 8.002 12.454 1.00 0.00 C ATOM 51 C LYS 51 43.277 6.806 11.742 1.00 0.00 C ATOM 51 O LYS 51 42.824 6.894 10.592 1.00 0.00 O ATOM 51 CB LYS 51 43.167 9.313 12.156 1.00 0.00 C ATOM 52 N GLU 52 43.259 5.699 12.460 1.00 0.00 N ATOM 52 CA GLU 52 42.693 4.435 11.969 1.00 0.00 C ATOM 52 C GLU 52 41.260 4.717 11.504 1.00 0.00 C ATOM 52 O GLU 52 40.695 4.012 10.656 1.00 0.00 O ATOM 52 CB GLU 52 42.624 3.461 13.157 1.00 0.00 C ATOM 53 N THR 53 40.701 5.761 12.084 1.00 0.00 N ATOM 53 CA THR 53 39.332 6.209 11.785 1.00 0.00 C ATOM 53 C THR 53 39.444 7.439 10.881 1.00 0.00 C ATOM 53 O THR 53 39.816 8.538 11.314 1.00 0.00 O ATOM 53 CB THR 53 38.683 6.631 13.115 1.00 0.00 C ATOM 54 N PHE 54 39.113 7.218 9.624 1.00 0.00 N ATOM 54 CA PHE 54 39.150 8.262 8.586 1.00 0.00 C ATOM 54 C PHE 54 37.826 9.026 8.691 1.00 0.00 C ATOM 54 O PHE 54 36.732 8.449 8.657 1.00 0.00 O ATOM 54 CB PHE 54 39.209 7.592 7.203 1.00 0.00 C ATOM 55 N TYR 55 37.966 10.332 8.819 1.00 0.00 N ATOM 55 CA TYR 55 36.825 11.255 8.936 1.00 0.00 C ATOM 55 C TYR 55 35.964 10.852 7.737 1.00 0.00 C ATOM 55 O TYR 55 34.840 11.337 7.542 1.00 0.00 O ATOM 55 CB TYR 55 37.336 12.693 8.744 1.00 0.00 C ATOM 56 N VAL 56 36.528 9.956 6.949 1.00 0.00 N ATOM 56 CA VAL 56 35.877 9.430 5.740 1.00 0.00 C ATOM 56 C VAL 56 34.969 8.266 6.149 1.00 0.00 C ATOM 56 O VAL 56 34.189 7.732 5.349 1.00 0.00 O ATOM 56 CB VAL 56 36.986 8.864 4.834 1.00 0.00 C ATOM 57 N GLY 57 35.100 7.898 7.409 1.00 0.00 N ATOM 57 CA GLY 57 34.326 6.803 8.009 1.00 0.00 C ATOM 57 C GLY 57 33.146 6.479 7.095 1.00 0.00 C ATOM 57 O GLY 57 32.037 6.146 7.543 1.00 0.00 O ATOM 58 N ALA 58 33.424 6.588 5.808 1.00 0.00 N ATOM 58 CA ALA 58 32.439 6.324 4.755 1.00 0.00 C ATOM 58 C ALA 58 31.472 7.505 4.618 1.00 0.00 C ATOM 58 O ALA 58 30.334 7.370 4.150 1.00 0.00 O ATOM 58 CB ALA 58 31.613 5.113 5.223 1.00 0.00 C ATOM 59 N ALA 59 31.961 8.657 5.039 1.00 0.00 N ATOM 59 CA ALA 59 31.202 9.918 4.997 1.00 0.00 C ATOM 59 C ALA 59 29.786 9.702 5.544 1.00 0.00 C ATOM 59 O ALA 59 28.812 10.328 5.105 1.00 0.00 O ATOM 59 CB ALA 59 31.107 10.391 3.535 1.00 0.00 C ATOM 60 N LYS 60 29.709 8.802 6.505 1.00 0.00 N ATOM 60 CA LYS 60 28.447 8.440 7.170 1.00 0.00 C ATOM 60 C LYS 60 28.012 9.465 8.221 1.00 0.00 C ATOM 60 O LYS 60 28.833 10.073 8.922 1.00 0.00 O ATOM 60 CB LYS 60 28.696 7.106 7.893 1.00 0.00 C ATOM 61 N THR 61 26.706 9.633 8.303 1.00 0.00 N ATOM 61 CA THR 61 26.074 10.570 9.245 1.00 0.00 C ATOM 61 C THR 61 25.937 11.903 8.507 1.00 0.00 C ATOM 61 O THR 61 25.260 12.016 7.476 1.00 0.00 O ATOM 61 CB THR 61 26.980 10.751 10.478 1.00 0.00 C ATOM 62 N LYS 62 26.600 12.898 9.065 1.00 0.00 N ATOM 62 CA LYS 62 26.607 14.264 8.520 1.00 0.00 C ATOM 62 C LYS 62 28.040 14.447 8.019 1.00 0.00 C ATOM 62 O LYS 62 28.981 14.680 8.791 1.00 0.00 O ATOM 62 CB LYS 62 26.370 15.270 9.661 1.00 0.00 C ATOM 63 N ALA 63 28.170 14.334 6.710 1.00 0.00 N ATOM 63 CA ALA 63 29.459 14.474 6.018 1.00 0.00 C ATOM 63 C ALA 63 29.390 15.152 4.648 1.00 0.00 C ATOM 63 O ALA 63 28.469 14.930 3.850 1.00 0.00 O ATOM 63 CB ALA 63 29.988 13.047 5.786 1.00 0.00 C ATOM 64 N THR 64 30.389 15.979 4.406 1.00 0.00 N ATOM 64 CA THR 64 30.520 16.735 3.150 1.00 0.00 C ATOM 64 C THR 64 31.878 16.299 2.596 1.00 0.00 C ATOM 64 O THR 64 32.942 16.583 3.164 1.00 0.00 O ATOM 64 CB THR 64 30.569 18.241 3.473 1.00 0.00 C ATOM 65 N ILE 65 31.802 15.604 1.475 1.00 0.00 N ATOM 65 CA ILE 65 32.986 15.087 0.772 1.00 0.00 C ATOM 65 C ILE 65 32.995 15.393 -0.730 1.00 0.00 C ATOM 65 O ILE 65 32.031 15.128 -1.460 1.00 0.00 O ATOM 65 CB ILE 65 32.995 13.561 0.979 1.00 0.00 C ATOM 66 N ASN 66 34.109 15.956 -1.160 1.00 0.00 N ATOM 66 CA ASN 66 34.330 16.334 -2.566 1.00 0.00 C ATOM 66 C ASN 66 35.612 15.598 -2.968 1.00 0.00 C ATOM 66 O ASN 66 36.725 15.955 -2.566 1.00 0.00 O ATOM 66 CB ASN 66 34.625 17.844 -2.591 1.00 0.00 C ATOM 67 N ILE 67 35.418 14.568 -3.769 1.00 0.00 N ATOM 67 CA ILE 67 36.513 13.722 -4.276 1.00 0.00 C ATOM 67 C ILE 67 36.293 13.476 -5.770 1.00 0.00 C ATOM 67 O ILE 67 35.218 13.055 -6.215 1.00 0.00 O ATOM 67 CB ILE 67 36.422 12.360 -3.565 1.00 0.00 C ATOM 68 N ASP 68 37.343 13.751 -6.522 1.00 0.00 N ATOM 68 CA ASP 68 37.351 13.586 -7.984 1.00 0.00 C ATOM 68 C ASP 68 38.444 12.552 -8.254 1.00 0.00 C ATOM 68 O ASP 68 39.645 12.805 -8.072 1.00 0.00 O ATOM 68 CB ASP 68 37.740 14.918 -8.650 1.00 0.00 C ATOM 69 N ALA 69 37.992 11.393 -8.692 1.00 0.00 N ATOM 69 CA ALA 69 38.872 10.260 -9.015 1.00 0.00 C ATOM 69 C ALA 69 39.450 9.761 -7.687 1.00 0.00 C ATOM 69 O ALA 69 40.655 9.502 -7.553 1.00 0.00 O ATOM 69 CB ALA 69 40.037 10.771 -9.885 1.00 0.00 C ATOM 70 N ILE 70 38.558 9.638 -6.722 1.00 0.00 N ATOM 70 CA ILE 70 38.899 9.175 -5.368 1.00 0.00 C ATOM 70 C ILE 70 39.342 7.713 -5.477 1.00 0.00 C ATOM 70 O ILE 70 39.740 7.074 -4.495 1.00 0.00 O ATOM 70 CB ILE 70 37.658 9.246 -4.461 1.00 0.00 C ATOM 71 N SER 71 39.261 7.214 -6.696 1.00 0.00 N ATOM 71 CA SER 71 39.638 5.831 -7.026 1.00 0.00 C ATOM 71 C SER 71 41.162 5.689 -6.976 1.00 0.00 C ATOM 71 O SER 71 41.899 6.249 -7.799 1.00 0.00 O ATOM 71 CB SER 71 39.177 5.566 -8.468 1.00 0.00 C ATOM 72 N GLY 72 41.602 4.928 -5.991 1.00 0.00 N ATOM 72 CA GLY 72 43.030 4.659 -5.761 1.00 0.00 C ATOM 72 C GLY 72 43.163 4.260 -4.290 1.00 0.00 C ATOM 72 O GLY 72 43.545 3.132 -3.948 1.00 0.00 O ATOM 73 N PHE 73 42.840 5.219 -3.443 1.00 0.00 N ATOM 73 CA PHE 73 42.896 5.051 -1.984 1.00 0.00 C ATOM 73 C PHE 73 41.569 4.402 -1.583 1.00 0.00 C ATOM 73 O PHE 73 41.424 3.819 -0.499 1.00 0.00 O ATOM 73 CB PHE 73 42.969 6.442 -1.328 1.00 0.00 C ATOM 74 N ALA 74 40.617 4.523 -2.490 1.00 0.00 N ATOM 74 CA ALA 74 39.267 3.975 -2.310 1.00 0.00 C ATOM 74 C ALA 74 38.887 3.140 -3.536 1.00 0.00 C ATOM 74 O ALA 74 38.739 3.650 -4.656 1.00 0.00 O ATOM 74 CB ALA 74 38.312 5.179 -2.202 1.00 0.00 C ATOM 75 N TYR 75 38.738 1.853 -3.288 1.00 0.00 N ATOM 75 CA TYR 75 38.377 0.872 -4.323 1.00 0.00 C ATOM 75 C TYR 75 37.199 0.045 -3.799 1.00 0.00 C ATOM 75 O TYR 75 37.277 -0.620 -2.756 1.00 0.00 O ATOM 75 CB TYR 75 39.571 -0.078 -4.526 1.00 0.00 C ATOM 76 N GLU 76 36.118 0.108 -4.553 1.00 0.00 N ATOM 76 CA GLU 76 34.874 -0.610 -4.235 1.00 0.00 C ATOM 76 C GLU 76 34.279 0.015 -2.969 1.00 0.00 C ATOM 76 O GLU 76 33.869 -0.675 -2.027 1.00 0.00 O ATOM 76 CB GLU 76 35.234 -2.072 -3.906 1.00 0.00 C ATOM 77 N TYR 77 34.248 1.334 -2.981 1.00 0.00 N ATOM 77 CA TYR 77 33.719 2.137 -1.867 1.00 0.00 C ATOM 77 C TYR 77 32.450 2.855 -2.337 1.00 0.00 C ATOM 77 O TYR 77 32.477 3.716 -3.228 1.00 0.00 O ATOM 77 CB TYR 77 34.774 3.211 -1.546 1.00 0.00 C ATOM 78 N THR 78 31.352 2.473 -1.714 1.00 0.00 N ATOM 78 CA THR 78 30.024 3.034 -2.011 1.00 0.00 C ATOM 78 C THR 78 29.527 3.655 -0.703 1.00 0.00 C ATOM 78 O THR 78 29.261 2.966 0.292 1.00 0.00 O ATOM 78 CB THR 78 29.078 1.891 -2.417 1.00 0.00 C ATOM 79 N LEU 79 29.411 4.969 -0.740 1.00 0.00 N ATOM 79 CA LEU 79 28.951 5.767 0.406 1.00 0.00 C ATOM 79 C LEU 79 27.884 6.789 0.006 1.00 0.00 C ATOM 79 O LEU 79 27.987 7.479 -1.019 1.00 0.00 O ATOM 79 CB LEU 79 30.173 6.569 0.891 1.00 0.00 C ATOM 80 N GLU 80 26.866 6.862 0.844 1.00 0.00 N ATOM 80 CA GLU 80 25.732 7.779 0.650 1.00 0.00 C ATOM 80 C GLU 80 25.781 8.736 1.844 1.00 0.00 C ATOM 80 O GLU 80 25.793 8.326 3.013 1.00 0.00 O ATOM 80 CB GLU 80 24.430 6.958 0.710 1.00 0.00 C ATOM 81 N ILE 81 25.811 10.012 1.512 1.00 0.00 N ATOM 81 CA ILE 81 25.861 11.100 2.502 1.00 0.00 C ATOM 81 C ILE 81 24.512 11.822 2.469 1.00 0.00 C ATOM 81 O ILE 81 24.084 12.364 1.440 1.00 0.00 O ATOM 81 CB ILE 81 26.944 12.105 2.073 1.00 0.00 C ATOM 82 N ASN 82 23.864 11.811 3.619 1.00 0.00 N ATOM 82 CA ASN 82 22.552 12.447 3.809 1.00 0.00 C ATOM 82 C ASN 82 22.710 13.939 3.508 1.00 0.00 C ATOM 82 O ASN 82 21.737 14.701 3.428 1.00 0.00 O ATOM 82 CB ASN 82 22.145 12.287 5.284 1.00 0.00 C ATOM 83 N GLY 83 23.962 14.324 3.347 1.00 0.00 N ATOM 83 CA GLY 83 24.342 15.714 3.051 1.00 0.00 C ATOM 83 C GLY 83 24.719 15.805 1.572 1.00 0.00 C ATOM 83 O GLY 83 23.862 15.844 0.676 1.00 0.00 O ATOM 84 N LYS 84 26.020 15.838 1.350 1.00 0.00 N ATOM 84 CA LYS 84 26.601 15.926 0.002 1.00 0.00 C ATOM 84 C LYS 84 27.476 14.684 -0.187 1.00 0.00 C ATOM 84 O LYS 84 28.573 14.562 0.376 1.00 0.00 O ATOM 84 CB LYS 84 27.466 17.196 -0.086 1.00 0.00 C ATOM 85 N SER 85 26.958 13.777 -0.993 1.00 0.00 N ATOM 85 CA SER 85 27.632 12.509 -1.315 1.00 0.00 C ATOM 85 C SER 85 28.697 12.727 -2.395 1.00 0.00 C ATOM 85 O SER 85 28.556 13.565 -3.295 1.00 0.00 O ATOM 85 CB SER 85 26.582 11.547 -1.897 1.00 0.00 C ATOM 86 N LEU 86 29.756 11.950 -2.273 1.00 0.00 N ATOM 86 CA LEU 86 30.898 11.994 -3.203 1.00 0.00 C ATOM 86 C LEU 86 30.379 11.531 -4.568 1.00 0.00 C ATOM 86 O LEU 86 30.052 10.357 -4.782 1.00 0.00 O ATOM 86 CB LEU 86 31.924 10.959 -2.714 1.00 0.00 C ATOM 87 N LYS 87 30.318 12.486 -5.477 1.00 0.00 N ATOM 87 CA LYS 87 29.850 12.260 -6.855 1.00 0.00 C ATOM 87 C LYS 87 31.035 11.829 -7.723 1.00 0.00 C ATOM 87 O LYS 87 32.117 12.434 -7.703 1.00 0.00 O ATOM 87 CB LYS 87 29.320 13.595 -7.403 1.00 0.00 C ATOM 88 N LYS 88 30.796 10.773 -8.478 1.00 0.00 N ATOM 88 CA LYS 88 31.796 10.193 -9.388 1.00 0.00 C ATOM 88 C LYS 88 32.923 9.612 -8.529 1.00 0.00 C ATOM 88 O LYS 88 34.117 9.741 -8.837 1.00 0.00 O ATOM 88 CB LYS 88 32.376 11.327 -10.257 1.00 0.00 C ATOM 89 N TYR 89 32.505 8.972 -7.453 1.00 0.00 N ATOM 89 CA TYR 89 33.419 8.338 -6.490 1.00 0.00 C ATOM 89 C TYR 89 33.425 6.833 -6.771 1.00 0.00 C ATOM 89 O TYR 89 32.399 6.147 -6.688 1.00 0.00 O ATOM 89 CB TYR 89 32.855 8.565 -5.077 1.00 0.00 C ATOM 90 N MET 90 34.609 6.352 -7.102 1.00 0.00 N ATOM 90 CA MET 90 34.841 4.934 -7.413 1.00 0.00 C ATOM 90 CB MET 90 35.542 4.246 -6.227 1.00 0.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 439 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 83.51 46.6 176 98.9 178 ARMSMC SECONDARY STRUCTURE . . 73.94 55.1 118 100.0 118 ARMSMC SURFACE . . . . . . . . 94.04 33.0 106 98.1 108 ARMSMC BURIED . . . . . . . . 64.36 67.1 70 100.0 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 75 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 66 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 13.26 (Number of atoms: 90) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 13.26 90 100.0 90 CRMSCA CRN = ALL/NP . . . . . 0.1473 CRMSCA SECONDARY STRUCTURE . . 11.34 59 100.0 59 CRMSCA SURFACE . . . . . . . . 14.39 55 100.0 55 CRMSCA BURIED . . . . . . . . 11.27 35 100.0 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 13.19 439 99.3 442 CRMSMC SECONDARY STRUCTURE . . 11.43 293 100.0 293 CRMSMC SURFACE . . . . . . . . 14.31 266 98.9 269 CRMSMC BURIED . . . . . . . . 11.25 173 100.0 173 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 13.60 82 23.0 356 CRMSSC RELIABLE SIDE CHAINS . 13.60 82 25.9 316 CRMSSC SECONDARY STRUCTURE . . 11.63 57 22.6 252 CRMSSC SURFACE . . . . . . . . 15.10 49 24.0 204 CRMSSC BURIED . . . . . . . . 10.99 33 21.7 152 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 13.19 439 61.3 716 CRMSALL SECONDARY STRUCTURE . . 11.43 293 60.0 488 CRMSALL SURFACE . . . . . . . . 14.31 266 62.7 424 CRMSALL BURIED . . . . . . . . 11.25 173 59.2 292 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.923 1.000 0.500 90 100.0 90 ERRCA SECONDARY STRUCTURE . . 10.144 1.000 0.500 59 100.0 59 ERRCA SURFACE . . . . . . . . 13.139 1.000 0.500 55 100.0 55 ERRCA BURIED . . . . . . . . 10.012 1.000 0.500 35 100.0 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.857 1.000 0.500 439 99.3 442 ERRMC SECONDARY STRUCTURE . . 10.209 1.000 0.500 293 100.0 293 ERRMC SURFACE . . . . . . . . 13.073 1.000 0.500 266 98.9 269 ERRMC BURIED . . . . . . . . 9.988 1.000 0.500 173 100.0 173 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 12.278 1.000 0.500 82 23.0 356 ERRSC RELIABLE SIDE CHAINS . 12.278 1.000 0.500 82 25.9 316 ERRSC SECONDARY STRUCTURE . . 10.429 1.000 0.500 57 22.6 252 ERRSC SURFACE . . . . . . . . 13.874 1.000 0.500 49 24.0 204 ERRSC BURIED . . . . . . . . 9.907 1.000 0.500 33 21.7 152 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 11.857 1.000 0.500 439 61.3 716 ERRALL SECONDARY STRUCTURE . . 10.209 1.000 0.500 293 60.0 488 ERRALL SURFACE . . . . . . . . 13.073 1.000 0.500 266 62.7 424 ERRALL BURIED . . . . . . . . 9.988 1.000 0.500 173 59.2 292 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 3 12 36 90 90 DISTCA CA (P) 0.00 1.11 3.33 13.33 40.00 90 DISTCA CA (RMS) 0.00 1.72 2.56 3.71 6.56 DISTCA ALL (N) 0 2 14 59 181 439 716 DISTALL ALL (P) 0.00 0.28 1.96 8.24 25.28 716 DISTALL ALL (RMS) 0.00 1.48 2.45 3.84 6.69 DISTALL END of the results output