####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 90 ( 360), selected 90 , name T0540TS328_1-D1 # Molecule2: number of CA atoms 90 ( 716), selected 90 , name T0540-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0540TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 1 - 32 4.62 16.86 LONGEST_CONTINUOUS_SEGMENT: 32 2 - 33 4.97 16.48 LCS_AVERAGE: 29.22 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 4 - 24 1.92 17.13 LCS_AVERAGE: 12.54 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 8 - 18 0.85 17.10 LCS_AVERAGE: 7.30 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 90 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 3 4 32 0 3 3 3 5 6 7 12 14 16 19 19 22 25 27 32 34 38 40 42 LCS_GDT T 2 T 2 3 4 32 3 3 3 3 5 6 7 15 18 22 22 24 25 29 30 32 34 38 40 42 LCS_GDT D 3 D 3 3 11 32 3 4 5 8 11 11 17 19 21 24 24 27 28 30 33 34 36 38 40 42 LCS_GDT L 4 L 4 6 21 32 3 6 8 10 17 20 22 25 25 27 28 29 31 32 33 34 36 38 38 42 LCS_GDT V 5 V 5 6 21 32 3 8 12 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 40 42 LCS_GDT A 6 A 6 6 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 40 42 LCS_GDT V 7 V 7 6 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 42 LCS_GDT W 8 W 8 11 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT D 9 D 9 11 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT V 10 V 10 11 21 32 4 10 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT A 11 A 11 11 21 32 4 10 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT L 12 L 12 11 21 32 5 9 11 15 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT S 13 S 13 11 21 32 5 9 11 14 19 21 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT D 14 D 14 11 21 32 5 9 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT G 15 G 15 11 21 32 5 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT V 16 V 16 11 21 32 5 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT H 17 H 17 11 21 32 8 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT K 18 K 18 11 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT I 19 I 19 9 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT E 20 E 20 9 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 42 LCS_GDT F 21 F 21 9 21 32 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 40 42 LCS_GDT E 22 E 22 9 21 32 8 11 14 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 40 42 LCS_GDT H 23 H 23 9 21 32 9 11 14 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 42 LCS_GDT G 24 G 24 4 21 32 3 4 10 16 19 22 24 25 25 27 28 29 31 32 33 34 36 37 37 39 LCS_GDT T 25 T 25 4 12 32 3 4 6 7 11 12 14 21 23 24 27 29 29 30 31 33 35 36 37 37 LCS_GDT T 26 T 26 4 12 32 3 3 9 16 19 22 24 25 25 27 28 29 31 32 33 33 36 37 37 38 LCS_GDT S 27 S 27 4 12 32 0 10 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT G 28 G 28 3 4 32 1 3 15 16 19 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT K 29 K 29 3 4 32 3 8 11 14 19 21 21 24 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT R 30 R 30 4 7 32 3 3 5 7 17 22 24 25 25 27 28 29 31 32 33 34 36 38 38 41 LCS_GDT V 31 V 31 4 7 32 3 3 4 9 15 16 20 22 25 27 28 29 31 32 33 34 36 38 40 42 LCS_GDT V 32 V 32 4 7 32 4 4 5 7 7 7 13 13 15 18 21 24 26 28 33 34 36 38 40 42 LCS_GDT Y 33 Y 33 4 7 32 4 4 5 7 7 7 9 9 11 13 17 21 24 25 28 30 33 37 40 42 LCS_GDT V 34 V 34 4 7 19 4 4 5 7 7 8 9 12 15 17 19 21 24 25 28 30 32 33 35 38 LCS_GDT D 35 D 35 4 7 19 4 4 5 7 7 8 11 13 15 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT G 36 G 36 4 7 19 3 3 4 4 6 8 11 14 15 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT K 37 K 37 4 6 19 3 3 4 5 6 7 11 14 15 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT E 38 E 38 4 6 19 3 3 4 4 6 7 9 14 15 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT E 39 E 39 6 8 19 4 5 6 7 7 9 10 12 13 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT I 40 I 40 6 8 19 4 5 6 7 7 9 10 14 15 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT R 41 R 41 6 8 19 4 5 6 7 7 9 11 14 15 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT K 42 K 42 6 8 19 4 4 6 7 7 9 11 14 15 18 19 21 24 25 28 30 32 33 35 38 LCS_GDT E 43 E 43 6 8 19 3 5 6 7 7 9 11 14 15 18 19 21 24 25 28 30 32 33 35 39 LCS_GDT W 44 W 44 6 8 19 3 5 6 7 7 8 9 14 15 18 19 21 25 27 29 30 37 39 45 45 LCS_GDT M 45 M 45 5 8 19 3 4 5 6 7 9 11 14 15 18 19 22 25 27 29 33 38 40 45 45 LCS_GDT F 46 F 46 5 8 19 3 4 5 7 7 8 10 14 15 18 19 21 24 25 29 33 38 40 45 45 LCS_GDT K 47 K 47 5 6 19 3 4 5 6 8 9 11 14 15 18 19 21 24 25 28 33 37 40 45 45 LCS_GDT L 48 L 48 5 6 19 3 3 5 6 8 9 11 14 15 18 19 21 24 25 29 33 38 40 45 45 LCS_GDT V 49 V 49 4 4 19 3 3 4 5 8 9 11 14 15 18 19 21 24 25 29 33 38 40 45 45 LCS_GDT G 50 G 50 4 4 19 0 3 4 5 6 9 11 12 15 17 18 21 24 25 28 33 38 40 45 45 LCS_GDT K 51 K 51 3 4 19 3 3 3 3 4 11 12 14 15 16 17 19 20 22 26 30 32 36 41 43 LCS_GDT E 52 E 52 3 4 20 3 3 3 3 11 11 12 14 14 16 17 19 22 24 29 33 38 40 45 45 LCS_GDT T 53 T 53 3 3 20 3 3 3 3 4 5 7 8 15 19 21 24 31 32 33 34 38 40 45 45 LCS_GDT F 54 F 54 3 3 20 1 3 4 4 4 7 12 13 15 23 23 24 30 32 33 34 38 40 45 45 LCS_GDT Y 55 Y 55 3 4 20 0 3 4 4 4 4 6 8 9 16 17 18 19 26 29 32 38 40 45 45 LCS_GDT V 56 V 56 3 5 20 0 3 4 4 9 11 12 15 15 16 19 22 25 27 29 33 38 40 45 45 LCS_GDT G 57 G 57 4 6 20 4 4 5 6 9 12 13 15 15 16 18 22 25 26 29 30 32 37 43 45 LCS_GDT A 58 A 58 4 6 20 4 4 5 8 9 12 13 15 15 16 18 22 25 27 29 30 32 39 45 45 LCS_GDT A 59 A 59 4 6 20 4 4 4 6 9 10 12 15 15 16 18 22 25 25 27 30 32 39 45 45 LCS_GDT K 60 K 60 4 11 20 4 4 5 6 10 12 13 15 15 16 21 22 25 27 29 32 34 40 45 45 LCS_GDT T 61 T 61 10 11 20 3 7 9 10 10 10 15 16 17 18 22 22 25 27 30 33 37 40 45 45 LCS_GDT K 62 K 62 10 11 20 3 7 9 10 10 12 15 16 17 18 22 22 25 27 30 33 38 40 45 45 LCS_GDT A 63 A 63 10 11 20 4 7 9 10 10 12 15 16 17 18 22 22 25 27 30 33 38 40 45 45 LCS_GDT T 64 T 64 10 11 27 4 7 9 10 10 12 15 16 20 23 23 24 27 27 31 34 38 40 45 45 LCS_GDT I 65 I 65 10 11 27 4 7 9 10 10 12 16 19 25 27 28 29 31 32 33 34 38 40 45 45 LCS_GDT N 66 N 66 10 11 27 4 7 9 10 10 15 17 21 25 27 28 29 31 32 33 34 38 40 45 45 LCS_GDT I 67 I 67 10 11 27 4 7 9 10 10 12 17 18 22 24 25 29 31 32 33 34 38 40 45 45 LCS_GDT D 68 D 68 10 11 27 3 7 9 10 10 12 15 18 20 22 25 26 29 32 33 34 38 40 45 45 LCS_GDT A 69 A 69 10 11 27 3 7 9 10 10 12 13 16 17 19 22 23 25 28 30 33 38 40 45 45 LCS_GDT I 70 I 70 10 11 27 3 7 9 10 10 12 15 16 17 19 22 23 26 28 30 33 38 40 45 45 LCS_GDT S 71 S 71 3 5 27 3 3 4 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT G 72 G 72 3 8 27 3 4 5 6 8 12 15 17 19 20 20 22 24 27 30 33 38 40 45 45 LCS_GDT F 73 F 73 6 8 27 3 6 6 7 8 9 11 16 19 20 20 20 22 27 30 32 38 40 45 45 LCS_GDT A 74 A 74 6 8 27 3 6 6 7 8 9 11 16 19 20 20 20 22 27 30 32 37 40 45 45 LCS_GDT Y 75 Y 75 6 8 27 4 6 6 7 8 12 15 17 19 20 23 23 25 27 30 32 38 40 45 45 LCS_GDT E 76 E 76 6 8 27 4 6 6 7 8 9 15 18 20 23 25 26 28 29 30 33 38 40 45 45 LCS_GDT Y 77 Y 77 6 8 27 4 6 6 7 8 9 15 17 19 20 20 21 23 27 30 32 38 40 45 45 LCS_GDT T 78 T 78 6 8 27 4 6 6 7 7 8 11 16 18 20 20 21 24 27 30 32 38 40 45 45 LCS_GDT L 79 L 79 3 12 27 3 3 3 6 8 12 15 17 19 20 20 22 25 27 30 33 38 40 45 45 LCS_GDT E 80 E 80 5 12 27 3 4 5 8 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT I 81 I 81 5 12 27 3 4 5 9 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT N 82 N 82 9 12 27 4 6 8 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT G 83 G 83 9 12 27 3 4 8 10 11 12 15 17 19 20 22 22 25 27 30 32 38 40 45 45 LCS_GDT K 84 K 84 9 12 27 3 4 8 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT S 85 S 85 9 12 27 4 6 8 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT L 86 L 86 9 12 27 4 6 8 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT K 87 K 87 9 12 27 4 6 8 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT K 88 K 88 9 12 27 3 6 8 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT Y 89 Y 89 9 12 27 3 4 8 10 11 12 15 17 19 20 22 22 25 27 30 33 38 40 45 45 LCS_GDT M 90 M 90 9 12 27 3 6 8 10 11 12 14 17 19 20 22 22 25 27 30 32 38 40 45 45 LCS_AVERAGE LCS_A: 16.35 ( 7.30 12.54 29.22 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 9 11 15 16 19 22 24 25 25 27 28 29 31 32 33 34 38 40 45 45 GDT PERCENT_AT 10.00 12.22 16.67 17.78 21.11 24.44 26.67 27.78 27.78 30.00 31.11 32.22 34.44 35.56 36.67 37.78 42.22 44.44 50.00 50.00 GDT RMS_LOCAL 0.35 0.45 1.01 1.07 1.48 1.79 2.01 2.19 2.20 2.55 2.95 3.14 3.64 3.80 4.01 4.37 6.80 6.87 7.23 7.22 GDT RMS_ALL_AT 16.85 16.92 16.69 16.69 16.62 16.75 16.91 16.91 16.78 16.67 16.56 16.53 16.58 16.60 16.63 16.36 22.61 22.86 22.36 21.90 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 13.888 4 0.305 0.305 15.777 0.000 0.000 LGA T 2 T 2 12.102 3 0.670 0.670 12.699 0.714 0.408 LGA D 3 D 3 8.841 4 0.218 0.218 10.253 7.381 3.690 LGA L 4 L 4 4.601 4 0.568 0.568 6.167 37.143 18.571 LGA V 5 V 5 2.242 3 0.642 0.642 3.296 61.190 34.966 LGA A 6 A 6 0.454 1 0.000 0.000 0.947 92.857 74.286 LGA V 7 V 7 1.032 3 0.062 0.062 1.494 83.690 47.823 LGA W 8 W 8 2.136 10 0.046 0.046 2.136 66.786 19.082 LGA D 9 D 9 2.187 4 0.065 0.065 2.187 66.786 33.393 LGA V 10 V 10 0.923 3 0.000 0.000 1.283 90.595 51.769 LGA A 11 A 11 0.745 1 0.050 0.050 1.664 86.190 68.952 LGA L 12 L 12 2.657 4 0.129 0.129 2.657 62.976 31.488 LGA S 13 S 13 3.238 2 0.000 0.000 3.238 57.381 38.254 LGA D 14 D 14 0.977 4 0.132 0.132 1.630 83.810 41.905 LGA G 15 G 15 1.218 0 0.095 0.095 1.218 88.214 88.214 LGA V 16 V 16 1.265 3 0.025 0.025 1.674 79.286 45.306 LGA H 17 H 17 1.196 6 0.111 0.111 1.445 83.690 33.476 LGA K 18 K 18 1.809 5 0.106 0.106 1.809 77.143 34.286 LGA I 19 I 19 1.146 4 0.000 0.000 1.421 81.429 40.714 LGA E 20 E 20 0.761 5 0.101 0.101 1.462 88.214 39.206 LGA F 21 F 21 0.967 7 0.111 0.111 1.105 85.952 31.255 LGA E 22 E 22 1.764 5 0.069 0.069 2.027 72.976 32.434 LGA H 23 H 23 2.418 6 0.137 0.137 3.325 61.071 24.429 LGA G 24 G 24 2.765 0 0.243 0.243 4.320 51.071 51.071 LGA T 25 T 25 7.573 3 0.160 0.160 7.573 13.929 7.959 LGA T 26 T 26 3.604 3 0.596 0.596 4.852 42.262 24.150 LGA S 27 S 27 2.113 2 0.566 0.566 3.242 65.238 43.492 LGA G 28 G 28 2.984 0 0.568 0.568 3.432 53.571 53.571 LGA K 29 K 29 5.587 5 0.539 0.539 5.587 31.905 14.180 LGA R 30 R 30 3.143 7 0.528 0.528 3.327 51.786 18.831 LGA V 31 V 31 5.754 3 0.643 0.643 7.047 20.000 11.429 LGA V 32 V 32 10.773 3 0.320 0.320 13.977 0.357 0.204 LGA Y 33 Y 33 16.508 8 0.000 0.000 16.789 0.000 0.000 LGA V 34 V 34 18.501 3 0.000 0.000 21.892 0.000 0.000 LGA D 35 D 35 23.747 4 0.408 0.408 24.832 0.000 0.000 LGA G 36 G 36 22.619 0 0.558 0.558 24.918 0.000 0.000 LGA K 37 K 37 28.151 5 0.582 0.582 28.151 0.000 0.000 LGA E 38 E 38 27.102 5 0.110 0.110 27.351 0.000 0.000 LGA E 39 E 39 25.112 5 0.639 0.639 27.725 0.000 0.000 LGA I 40 I 40 24.244 4 0.058 0.058 24.244 0.000 0.000 LGA R 41 R 41 24.644 7 0.078 0.078 28.577 0.000 0.000 LGA K 42 K 42 26.988 5 0.159 0.159 26.988 0.000 0.000 LGA E 43 E 43 29.630 5 0.655 0.655 30.855 0.000 0.000 LGA W 44 W 44 30.218 10 0.109 0.109 30.218 0.000 0.000 LGA M 45 M 45 30.315 4 0.156 0.156 30.315 0.000 0.000 LGA F 46 F 46 29.184 7 0.084 0.084 29.781 0.000 0.000 LGA K 47 K 47 27.657 5 0.590 0.590 28.342 0.000 0.000 LGA L 48 L 48 23.635 4 0.000 0.000 25.183 0.000 0.000 LGA V 49 V 49 16.799 3 0.645 0.645 19.631 0.000 0.000 LGA G 50 G 50 14.247 0 0.409 0.409 15.255 0.000 0.000 LGA K 51 K 51 14.259 5 0.631 0.631 15.922 0.000 0.000 LGA E 52 E 52 16.124 5 0.666 0.666 16.124 0.000 0.000 LGA T 53 T 53 13.372 3 0.666 0.666 14.442 0.000 0.000 LGA F 54 F 54 13.134 7 0.707 0.707 13.816 0.000 0.000 LGA Y 55 Y 55 17.166 8 0.638 0.638 20.992 0.000 0.000 LGA V 56 V 56 21.598 3 0.592 0.592 23.212 0.000 0.000 LGA G 57 G 57 23.252 0 0.538 0.538 24.717 0.000 0.000 LGA A 58 A 58 27.966 1 0.073 0.073 29.367 0.000 0.000 LGA A 59 A 59 28.699 1 0.145 0.145 28.699 0.000 0.000 LGA K 60 K 60 25.071 5 0.444 0.444 26.112 0.000 0.000 LGA T 61 T 61 22.080 3 0.617 0.617 23.512 0.000 0.000 LGA K 62 K 62 18.371 5 0.089 0.089 19.893 0.000 0.000 LGA A 63 A 63 14.200 1 0.068 0.068 15.431 0.000 0.000 LGA T 64 T 64 12.560 3 0.098 0.098 12.940 0.000 0.000 LGA I 65 I 65 9.285 4 0.000 0.000 10.875 0.476 0.238 LGA N 66 N 66 10.774 4 0.077 0.077 10.774 0.238 0.119 LGA I 67 I 67 12.308 4 0.071 0.071 14.713 0.000 0.000 LGA D 68 D 68 14.990 4 0.000 0.000 15.747 0.000 0.000 LGA A 69 A 69 18.699 1 0.633 0.633 18.877 0.000 0.000 LGA I 70 I 70 17.312 4 0.701 0.701 18.911 0.000 0.000 LGA S 71 S 71 16.023 2 0.062 0.062 16.707 0.000 0.000 LGA G 72 G 72 19.332 0 0.631 0.631 19.332 0.000 0.000 LGA F 73 F 73 17.988 7 0.563 0.563 18.667 0.000 0.000 LGA A 74 A 74 13.589 1 0.145 0.145 14.363 0.000 0.000 LGA Y 75 Y 75 10.660 8 0.175 0.175 12.337 0.000 0.000 LGA E 76 E 76 8.883 5 0.072 0.072 8.892 5.119 2.275 LGA Y 77 Y 77 11.903 8 0.294 0.294 13.379 0.000 0.000 LGA T 78 T 78 14.489 3 0.495 0.495 16.784 0.000 0.000 LGA L 79 L 79 19.975 4 0.640 0.640 22.573 0.000 0.000 LGA E 80 E 80 22.164 5 0.619 0.619 25.137 0.000 0.000 LGA I 81 I 81 26.269 4 0.676 0.676 29.032 0.000 0.000 LGA N 82 N 82 29.050 4 0.117 0.117 29.885 0.000 0.000 LGA G 83 G 83 26.992 0 0.125 0.125 27.399 0.000 0.000 LGA K 84 K 84 24.444 5 0.191 0.191 25.396 0.000 0.000 LGA S 85 S 85 19.044 2 0.000 0.000 21.072 0.000 0.000 LGA L 86 L 86 17.361 4 0.062 0.062 17.555 0.000 0.000 LGA K 87 K 87 12.969 5 0.082 0.082 15.423 0.000 0.000 LGA K 88 K 88 14.521 5 0.049 0.049 14.521 0.000 0.000 LGA Y 89 Y 89 15.098 8 0.069 0.069 17.660 0.000 0.000 LGA M 90 M 90 18.511 4 0.175 0.175 18.511 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 90 360 360 100.00 716 360 50.28 90 SUMMARY(RMSD_GDC): 14.458 14.378 14.378 20.571 11.794 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 90 90 4.0 25 2.19 23.889 22.103 1.091 LGA_LOCAL RMSD: 2.192 Number of atoms: 25 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.907 Number of assigned atoms: 90 Std_ASGN_ATOMS RMSD: 14.458 Standard rmsd on all 90 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.731481 * X + 0.680644 * Y + -0.040733 * Z + -79.833992 Y_new = -0.661710 * X + 0.694179 * Y + -0.283295 * Z + -143.898560 Z_new = -0.164547 * X + 0.234179 * Y + 0.958167 * Z + 524.021179 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.735360 0.165299 0.239704 [DEG: -42.1330 9.4709 13.7340 ] ZXZ: -0.142805 0.290268 -0.612506 [DEG: -8.1821 16.6311 -35.0940 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0540TS328_1-D1 REMARK 2: T0540-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0540TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 90 90 4.0 25 2.19 22.103 14.46 REMARK ---------------------------------------------------------- MOLECULE T0540TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0540 REMARK MODEL 1 REMARK PARENT 2zvv_A ATOM 1 N MET 1 29.084 14.026 -2.580 1.00 3.00 N ATOM 2 CA MET 1 28.852 13.474 -1.254 1.00 3.00 C ATOM 3 C MET 1 28.382 12.024 -1.340 1.00 3.00 C ATOM 4 O MET 1 27.434 11.705 -2.058 1.00 3.00 O ATOM 5 N THR 2 29.073 11.159 -0.607 1.00 3.00 N ATOM 6 CA THR 2 28.748 9.738 -0.523 1.00 3.00 C ATOM 7 C THR 2 28.869 9.352 0.957 1.00 3.00 C ATOM 8 O THR 2 29.156 10.205 1.810 1.00 3.00 O ATOM 9 N ASP 3 28.647 8.078 1.269 1.00 3.00 N ATOM 10 CA ASP 3 28.758 7.626 2.656 1.00 3.00 C ATOM 11 C ASP 3 30.203 7.707 3.147 1.00 3.00 C ATOM 12 O ASP 3 30.463 7.609 4.346 1.00 3.00 O ATOM 13 N LEU 4 31.133 7.919 2.217 1.00 3.00 N ATOM 14 CA LEU 4 32.549 8.028 2.543 1.00 3.00 C ATOM 15 C LEU 4 32.976 9.485 2.783 1.00 3.00 C ATOM 16 O LEU 4 34.166 9.768 2.942 1.00 3.00 O ATOM 17 N VAL 5 32.009 10.402 2.781 1.00 3.00 N ATOM 18 CA VAL 5 32.310 11.805 3.021 1.00 3.00 C ATOM 19 C VAL 5 32.025 12.727 1.853 1.00 3.00 C ATOM 20 O VAL 5 31.337 12.355 0.905 1.00 3.00 O ATOM 21 N ALA 6 32.531 13.950 1.946 1.00 3.00 N ATOM 22 CA ALA 6 32.349 14.937 0.892 1.00 3.00 C ATOM 23 C ALA 6 33.690 15.245 0.224 1.00 3.00 C ATOM 24 O ALA 6 34.686 15.511 0.897 1.00 3.00 O ATOM 25 N VAL 7 33.704 15.182 -1.101 1.00 3.00 N ATOM 26 CA VAL 7 34.912 15.460 -1.863 1.00 3.00 C ATOM 27 C VAL 7 34.759 16.696 -2.753 1.00 3.00 C ATOM 28 O VAL 7 33.731 16.877 -3.402 1.00 3.00 O ATOM 29 N TRP 8 35.766 17.566 -2.719 1.00 3.00 N ATOM 30 CA TRP 8 35.806 18.772 -3.546 1.00 3.00 C ATOM 31 C TRP 8 36.956 18.509 -4.540 1.00 3.00 C ATOM 32 O TRP 8 38.101 18.347 -4.123 1.00 3.00 O ATOM 33 N ASP 9 36.649 18.448 -5.835 1.00 3.00 N ATOM 34 CA ASP 9 37.661 18.169 -6.860 1.00 3.00 C ATOM 35 C ASP 9 37.771 19.221 -7.958 1.00 3.00 C ATOM 36 O ASP 9 36.764 19.734 -8.449 1.00 3.00 O ATOM 37 N VAL 10 38.999 19.454 -8.412 1.00 3.00 N ATOM 38 CA VAL 10 39.252 20.397 -9.490 1.00 3.00 C ATOM 39 C VAL 10 40.442 19.913 -10.327 1.00 3.00 C ATOM 40 O VAL 10 41.259 19.120 -9.871 1.00 3.00 O ATOM 41 N ALA 11 40.508 20.379 -11.565 1.00 3.00 N ATOM 42 CA ALA 11 41.590 20.021 -12.471 1.00 3.00 C ATOM 43 C ALA 11 41.921 21.254 -13.291 1.00 3.00 C ATOM 44 O ALA 11 41.032 22.010 -13.676 1.00 3.00 O ATOM 45 N LEU 12 43.207 21.483 -13.516 1.00 3.00 N ATOM 46 CA LEU 12 43.615 22.640 -14.284 1.00 3.00 C ATOM 47 C LEU 12 44.914 22.385 -15.009 1.00 3.00 C ATOM 48 O LEU 12 45.377 21.248 -15.093 1.00 3.00 O ATOM 49 N SER 13 45.515 23.454 -15.510 1.00 3.00 N ATOM 50 CA SER 13 46.771 23.344 -16.235 1.00 3.00 C ATOM 51 C SER 13 47.907 22.731 -15.416 1.00 3.00 C ATOM 52 O SER 13 48.632 21.866 -15.916 1.00 3.00 O ATOM 53 N ASP 14 48.053 23.131 -14.155 1.00 3.00 N ATOM 54 CA ASP 14 49.148 22.572 -13.372 1.00 3.00 C ATOM 55 C ASP 14 48.922 21.178 -12.799 1.00 3.00 C ATOM 56 O ASP 14 49.842 20.589 -12.250 1.00 3.00 O ATOM 57 N GLY 15 47.718 20.632 -12.973 1.00 3.00 N ATOM 58 CA GLY 15 47.433 19.299 -12.464 1.00 3.00 C ATOM 59 C GLY 15 46.040 19.141 -11.875 1.00 3.00 C ATOM 60 O GLY 15 45.132 19.912 -12.184 1.00 3.00 O ATOM 61 N VAL 16 45.878 18.142 -11.016 1.00 3.00 N ATOM 62 CA VAL 16 44.594 17.875 -10.377 1.00 3.00 C ATOM 63 C VAL 16 44.693 17.988 -8.861 1.00 3.00 C ATOM 64 O VAL 16 45.769 17.837 -8.279 1.00 3.00 O ATOM 65 N HIS 17 43.549 18.217 -8.226 1.00 3.00 N ATOM 66 CA HIS 17 43.495 18.359 -6.784 1.00 3.00 C ATOM 67 C HIS 17 42.124 18.011 -6.236 1.00 3.00 C ATOM 68 O HIS 17 41.097 18.356 -6.830 1.00 3.00 O ATOM 69 N LYS 18 42.110 17.273 -5.132 1.00 3.00 N ATOM 70 CA LYS 18 40.847 16.946 -4.484 1.00 3.00 C ATOM 71 C LYS 18 41.023 16.933 -2.976 1.00 3.00 C ATOM 72 O LYS 18 42.109 16.672 -2.459 1.00 3.00 O ATOM 73 N ILE 19 39.964 17.310 -2.280 1.00 3.00 N ATOM 74 CA ILE 19 39.982 17.368 -0.833 1.00 3.00 C ATOM 75 C ILE 19 38.779 16.594 -0.321 1.00 3.00 C ATOM 76 O ILE 19 37.651 16.857 -0.731 1.00 3.00 O ATOM 77 N GLU 20 39.045 15.603 0.525 1.00 3.00 N ATOM 78 CA GLU 20 38.000 14.776 1.113 1.00 3.00 C ATOM 79 C GLU 20 37.842 15.057 2.615 1.00 3.00 C ATOM 80 O GLU 20 38.806 14.967 3.385 1.00 3.00 O ATOM 81 N PHE 21 36.627 15.420 3.013 1.00 3.00 N ATOM 82 CA PHE 21 36.320 15.694 4.414 1.00 3.00 C ATOM 83 C PHE 21 35.427 14.594 4.970 1.00 3.00 C ATOM 84 O PHE 21 34.512 14.119 4.298 1.00 3.00 O ATOM 85 N GLU 22 35.693 14.221 6.215 1.00 3.00 N ATOM 86 CA GLU 22 34.951 13.177 6.909 1.00 3.00 C ATOM 87 C GLU 22 34.657 13.683 8.315 1.00 3.00 C ATOM 88 O GLU 22 35.402 14.507 8.850 1.00 3.00 O ATOM 89 N HIS 23 33.560 13.215 8.906 1.00 3.00 N ATOM 90 CA HIS 23 33.232 13.609 10.275 1.00 3.00 C ATOM 91 C HIS 23 34.303 13.005 11.181 1.00 3.00 C ATOM 92 O HIS 23 34.798 11.909 10.914 1.00 3.00 O ATOM 93 N GLY 24 34.716 13.751 12.196 1.00 3.00 N ATOM 94 CA GLY 24 35.702 13.260 13.150 1.00 3.00 C ATOM 95 C GLY 24 35.029 12.239 14.066 1.00 3.00 C ATOM 96 O GLY 24 33.814 12.026 13.990 1.00 3.00 O ATOM 97 N THR 25 35.822 11.627 14.936 1.00 3.00 N ATOM 98 CA THR 25 35.324 10.640 15.884 1.00 3.00 C ATOM 99 C THR 25 34.280 11.320 16.772 1.00 3.00 C ATOM 100 O THR 25 33.262 10.728 17.113 1.00 3.00 O ATOM 101 N THR 26 34.568 12.569 17.138 1.00 3.00 N ATOM 102 CA THR 26 33.682 13.414 17.942 1.00 3.00 C ATOM 103 C THR 26 33.933 14.859 17.507 1.00 3.00 C ATOM 104 O THR 26 34.923 15.144 16.819 1.00 3.00 O ATOM 105 N SER 27 33.016 15.753 17.865 1.00 3.00 N ATOM 106 CA SER 27 33.198 17.169 17.593 1.00 3.00 C ATOM 107 C SER 27 33.089 18.493 16.905 1.00 3.00 C ATOM 108 O SER 27 33.258 18.483 15.688 1.00 3.00 O ATOM 109 N GLY 28 32.805 19.629 17.552 1.00 3.00 N ATOM 110 CA GLY 28 32.653 20.875 16.804 1.00 3.00 C ATOM 111 C GLY 28 33.900 21.229 16.009 1.00 3.00 C ATOM 112 O GLY 28 34.979 21.311 16.572 1.00 3.00 O ATOM 113 N LYS 29 33.713 21.508 14.730 1.00 3.00 N ATOM 114 CA LYS 29 34.751 21.911 13.802 1.00 3.00 C ATOM 115 C LYS 29 35.853 20.887 13.645 1.00 3.00 C ATOM 116 O LYS 29 36.983 21.235 13.301 1.00 3.00 O ATOM 117 N ARG 30 35.597 19.620 13.940 1.00 3.00 N ATOM 118 CA ARG 30 36.627 18.592 13.721 1.00 3.00 C ATOM 119 C ARG 30 36.560 18.097 12.286 1.00 3.00 C ATOM 120 O ARG 30 37.461 18.281 11.478 1.00 3.00 O ATOM 121 N VAL 31 35.434 17.448 11.967 1.00 3.00 N ATOM 122 CA VAL 31 35.145 16.938 10.645 1.00 3.00 C ATOM 123 C VAL 31 33.978 17.726 10.055 1.00 3.00 C ATOM 124 O VAL 31 33.940 17.902 8.830 1.00 3.00 O ATOM 125 N VAL 32 33.043 18.136 10.904 1.00 3.00 N ATOM 126 CA VAL 32 31.911 18.953 10.436 1.00 3.00 C ATOM 127 C VAL 32 30.854 17.868 10.526 1.00 3.00 C ATOM 128 O VAL 32 31.073 16.818 11.118 1.00 3.00 O ATOM 129 N TYR 33 29.676 18.184 10.001 1.00 3.00 N ATOM 130 CA TYR 33 28.545 17.270 9.988 1.00 3.00 C ATOM 131 C TYR 33 28.154 17.061 8.534 1.00 3.00 C ATOM 132 O TYR 33 27.962 18.025 7.792 1.00 3.00 O ATOM 133 N VAL 34 28.098 15.802 8.119 1.00 3.00 N ATOM 134 CA VAL 34 27.743 15.467 6.751 1.00 3.00 C ATOM 135 C VAL 34 26.521 14.556 6.769 1.00 3.00 C ATOM 136 O VAL 34 26.587 13.449 7.289 1.00 3.00 O ATOM 137 N ASP 35 25.391 15.061 6.283 1.00 3.00 N ATOM 138 CA ASP 35 24.159 14.279 6.230 1.00 3.00 C ATOM 139 C ASP 35 23.933 13.841 4.794 1.00 3.00 C ATOM 140 O ASP 35 23.757 14.670 3.899 1.00 3.00 O ATOM 141 N GLY 36 23.933 12.533 4.582 1.00 3.00 N ATOM 142 CA GLY 36 23.759 11.970 3.256 1.00 3.00 C ATOM 143 C GLY 36 22.512 11.077 3.184 1.00 3.00 C ATOM 144 O GLY 36 22.460 10.020 3.810 1.00 3.00 O ATOM 145 N LYS 37 21.485 11.556 2.482 1.00 3.00 N ATOM 146 CA LYS 37 20.237 10.806 2.293 1.00 3.00 C ATOM 147 C LYS 37 20.387 10.045 0.983 1.00 3.00 C ATOM 148 O LYS 37 20.132 8.848 0.913 1.00 3.00 O ATOM 149 N GLU 38 20.802 10.768 -0.054 1.00 3.00 N ATOM 150 CA GLU 38 21.066 10.193 -1.372 1.00 3.00 C ATOM 151 C GLU 38 22.361 10.857 -1.830 1.00 3.00 C ATOM 152 O GLU 38 22.574 12.043 -1.569 1.00 3.00 O ATOM 153 N GLU 39 23.254 10.098 -2.487 1.00 3.00 N ATOM 154 CA GLU 39 24.517 10.668 -2.968 1.00 3.00 C ATOM 155 C GLU 39 24.263 11.757 -4.008 1.00 3.00 C ATOM 156 O GLU 39 23.298 11.686 -4.774 1.00 3.00 O ATOM 157 N ILE 40 25.102 12.792 -3.996 1.00 3.00 N ATOM 158 CA ILE 40 24.975 13.886 -4.950 1.00 3.00 C ATOM 159 C ILE 40 26.357 14.268 -5.476 1.00 3.00 C ATOM 160 O ILE 40 27.339 14.238 -4.735 1.00 3.00 O ATOM 161 N ARG 41 26.428 14.603 -6.760 1.00 3.00 N ATOM 162 CA ARG 41 27.679 15.018 -7.389 1.00 3.00 C ATOM 163 C ARG 41 27.357 16.094 -8.423 1.00 3.00 C ATOM 164 O ARG 41 26.667 15.828 -9.414 1.00 3.00 O ATOM 165 N LYS 42 27.818 17.314 -8.166 1.00 3.00 N ATOM 166 CA LYS 42 27.572 18.435 -9.066 1.00 3.00 C ATOM 167 C LYS 42 28.819 19.297 -9.266 1.00 3.00 C ATOM 168 O LYS 42 29.702 19.338 -8.411 1.00 3.00 O ATOM 169 N GLU 43 28.882 19.966 -10.413 1.00 3.00 N ATOM 170 CA GLU 43 30.007 20.828 -10.766 1.00 3.00 C ATOM 171 C GLU 43 29.608 22.292 -10.654 1.00 3.00 C ATOM 172 O GLU 43 28.514 22.678 -11.067 1.00 3.00 O ATOM 173 N TRP 44 30.510 23.102 -10.107 1.00 3.00 N ATOM 174 CA TRP 44 30.254 24.525 -9.914 1.00 3.00 C ATOM 175 C TRP 44 31.452 25.412 -10.256 1.00 3.00 C ATOM 176 O TRP 44 32.602 24.984 -10.172 1.00 3.00 O ATOM 177 N MET 45 31.159 26.663 -10.598 1.00 3.00 N ATOM 178 CA MET 45 32.182 27.649 -10.923 1.00 3.00 C ATOM 179 C MET 45 32.813 28.171 -9.621 1.00 3.00 C ATOM 180 O MET 45 32.131 28.782 -8.793 1.00 3.00 O ATOM 181 N PHE 46 34.113 27.933 -9.452 1.00 3.00 N ATOM 182 CA PHE 46 34.823 28.367 -8.249 1.00 3.00 C ATOM 183 C PHE 46 34.780 29.877 -8.039 1.00 3.00 C ATOM 184 O PHE 46 34.721 30.355 -6.903 1.00 3.00 O ATOM 185 N LYS 47 34.759 30.621 -9.138 1.00 3.00 N ATOM 186 CA LYS 47 34.691 32.073 -9.080 1.00 3.00 C ATOM 187 C LYS 47 33.481 32.513 -8.239 1.00 3.00 C ATOM 188 O LYS 47 33.585 33.426 -7.429 1.00 3.00 O ATOM 189 N LEU 48 32.349 31.829 -8.396 1.00 3.00 N ATOM 190 CA LEU 48 31.156 32.177 -7.627 1.00 3.00 C ATOM 191 C LEU 48 31.073 31.723 -6.163 1.00 3.00 C ATOM 192 O LEU 48 30.749 32.505 -5.276 1.00 3.00 O ATOM 193 N VAL 49 31.342 30.450 -5.908 1.00 3.00 N ATOM 194 CA VAL 49 31.247 29.937 -4.551 1.00 3.00 C ATOM 195 C VAL 49 32.306 30.547 -3.616 1.00 3.00 C ATOM 196 O VAL 49 32.090 30.671 -2.409 1.00 3.00 O ATOM 197 N GLY 50 33.440 30.940 -4.197 1.00 3.00 N ATOM 198 CA GLY 50 34.497 31.520 -3.365 1.00 3.00 C ATOM 199 C GLY 50 34.493 33.030 -3.296 1.00 3.00 C ATOM 200 O GLY 50 34.356 33.583 -2.215 1.00 3.00 O ATOM 201 N LYS 51 34.628 33.714 -4.446 1.00 9.00 N ATOM 202 CA LYS 51 34.695 35.179 -4.422 1.00 9.00 C ATOM 203 C LYS 51 33.403 35.782 -3.927 1.00 9.00 C ATOM 204 O LYS 51 33.403 36.806 -3.252 1.00 9.00 O ATOM 205 N GLU 52 32.281 35.125 -4.219 1.00 3.00 N ATOM 206 CA GLU 52 31.029 35.694 -3.745 1.00 3.00 C ATOM 207 C GLU 52 30.409 35.070 -2.505 1.00 3.00 C ATOM 208 O GLU 52 29.878 35.807 -1.674 1.00 3.00 O ATOM 209 N THR 53 30.504 33.748 -2.317 1.00 3.00 N ATOM 210 CA THR 53 29.853 33.184 -1.137 1.00 3.00 C ATOM 211 C THR 53 30.751 32.995 0.094 1.00 3.00 C ATOM 212 O THR 53 30.274 32.635 1.159 1.00 3.00 O ATOM 213 N PHE 54 32.048 33.268 -0.055 1.00 3.00 N ATOM 214 CA PHE 54 32.953 33.145 1.066 1.00 3.00 C ATOM 215 C PHE 54 33.232 34.524 1.672 1.00 3.00 C ATOM 216 O PHE 54 33.872 34.624 2.707 1.00 3.00 O ATOM 217 N TYR 55 32.761 35.585 1.020 1.00 3.00 N ATOM 218 CA TYR 55 32.938 36.929 1.565 1.00 3.00 C ATOM 219 C TYR 55 32.030 37.089 2.791 1.00 3.00 C ATOM 220 O TYR 55 32.141 38.063 3.525 1.00 3.00 O ATOM 221 N VAL 56 31.118 36.139 2.996 1.00 3.00 N ATOM 222 CA VAL 56 30.214 36.173 4.143 1.00 3.00 C ATOM 223 C VAL 56 30.822 35.462 5.355 1.00 3.00 C ATOM 224 O VAL 56 30.213 35.430 6.425 1.00 3.00 O ATOM 225 N GLY 57 32.025 34.911 5.186 1.00 3.00 N ATOM 226 CA GLY 57 32.711 34.176 6.253 1.00 3.00 C ATOM 227 C GLY 57 32.706 34.860 7.626 1.00 3.00 C ATOM 228 O GLY 57 32.408 34.219 8.627 1.00 3.00 O ATOM 229 N ALA 58 33.003 36.174 7.687 1.00 3.00 N ATOM 230 CA ALA 58 32.994 36.821 9.005 1.00 3.00 C ATOM 231 C ALA 58 31.659 36.805 9.762 1.00 3.00 C ATOM 232 O ALA 58 31.634 37.034 10.964 1.00 3.00 O ATOM 233 N ALA 59 30.568 36.472 9.076 1.00 3.00 N ATOM 234 CA ALA 59 29.250 36.420 9.707 1.00 3.00 C ATOM 235 C ALA 59 29.023 35.210 10.605 1.00 3.00 C ATOM 236 O ALA 59 28.251 35.280 11.560 1.00 3.00 O ATOM 237 N LYS 60 29.691 34.103 10.305 1.00 3.00 N ATOM 238 CA LYS 60 29.497 32.885 11.080 1.00 3.00 C ATOM 239 C LYS 60 30.692 31.949 11.041 1.00 3.00 C ATOM 240 O LYS 60 31.433 31.913 10.061 1.00 3.00 O ATOM 241 N THR 61 30.857 31.182 12.115 1.00 3.00 N ATOM 242 CA THR 61 31.934 30.204 12.216 1.00 3.00 C ATOM 243 C THR 61 31.564 28.933 11.462 1.00 3.00 C ATOM 244 O THR 61 32.386 28.039 11.281 1.00 3.00 O ATOM 245 N LYS 62 30.323 28.886 10.997 1.00 3.00 N ATOM 246 CA LYS 62 29.798 27.728 10.301 1.00 3.00 C ATOM 247 C LYS 62 29.134 28.088 8.982 1.00 3.00 C ATOM 248 O LYS 62 28.571 29.167 8.837 1.00 3.00 O ATOM 249 N ALA 63 29.249 27.188 8.015 1.00 3.00 N ATOM 250 CA ALA 63 28.604 27.358 6.721 1.00 3.00 C ATOM 251 C ALA 63 27.874 26.049 6.433 1.00 3.00 C ATOM 252 O ALA 63 28.336 24.976 6.817 1.00 3.00 O ATOM 253 N THR 64 26.708 26.147 5.808 1.00 3.00 N ATOM 254 CA THR 64 25.928 24.963 5.485 1.00 3.00 C ATOM 255 C THR 64 25.703 24.867 3.985 1.00 3.00 C ATOM 256 O THR 64 25.179 25.790 3.368 1.00 3.00 O ATOM 257 N ILE 65 26.144 23.752 3.407 1.00 3.00 N ATOM 258 CA ILE 65 26.025 23.496 1.979 1.00 3.00 C ATOM 259 C ILE 65 24.968 22.419 1.736 1.00 3.00 C ATOM 260 O ILE 65 25.112 21.291 2.199 1.00 3.00 O ATOM 261 N ASN 66 23.910 22.774 1.014 1.00 3.00 N ATOM 262 CA ASN 66 22.834 21.831 0.716 1.00 3.00 C ATOM 263 C ASN 66 22.848 21.493 -0.762 1.00 3.00 C ATOM 264 O ASN 66 22.819 22.383 -1.613 1.00 3.00 O ATOM 265 N ILE 67 22.879 20.196 -1.051 1.00 3.00 N ATOM 266 CA ILE 67 22.936 19.686 -2.414 1.00 3.00 C ATOM 267 C ILE 67 21.819 18.706 -2.781 1.00 3.00 C ATOM 268 O ILE 67 21.392 17.898 -1.964 1.00 3.00 O ATOM 269 N ASP 68 21.403 18.766 -4.040 1.00 3.00 N ATOM 270 CA ASP 68 20.377 17.887 -4.601 1.00 3.00 C ATOM 271 C ASP 68 20.666 17.797 -6.084 1.00 3.00 C ATOM 272 O ASP 68 20.946 18.810 -6.725 1.00 3.00 O ATOM 273 N ALA 69 20.612 16.579 -6.621 1.00 3.00 N ATOM 274 CA ALA 69 20.896 16.325 -8.035 1.00 3.00 C ATOM 275 C ALA 69 20.171 17.221 -9.044 1.00 3.00 C ATOM 276 O ALA 69 20.764 17.638 -10.047 1.00 3.00 O ATOM 277 N ILE 70 18.920 17.569 -8.757 1.00 3.00 N ATOM 278 CA ILE 70 18.131 18.402 -9.671 1.00 3.00 C ATOM 279 C ILE 70 18.020 19.889 -9.294 1.00 3.00 C ATOM 280 O ILE 70 17.196 20.619 -9.859 1.00 3.00 O ATOM 281 N SER 71 18.892 20.360 -8.407 1.00 3.00 N ATOM 282 CA SER 71 18.815 21.747 -7.975 1.00 3.00 C ATOM 283 C SER 71 20.136 22.507 -7.827 1.00 3.00 C ATOM 284 O SER 71 21.226 21.923 -7.831 1.00 3.00 O ATOM 285 N GLY 72 20.050 23.848 -7.786 1.00 3.00 N ATOM 286 CA GLY 72 21.248 24.673 -7.620 1.00 3.00 C ATOM 287 C GLY 72 21.715 24.389 -6.188 1.00 3.00 C ATOM 288 O GLY 72 20.913 23.973 -5.354 1.00 3.00 O ATOM 289 N PHE 73 23.001 24.558 -5.912 1.00 3.00 N ATOM 290 CA PHE 73 23.503 24.333 -4.558 1.00 3.00 C ATOM 291 C PHE 73 23.125 25.539 -3.695 1.00 3.00 C ATOM 292 O PHE 73 22.989 26.646 -4.211 1.00 3.00 O ATOM 293 N ALA 74 22.895 25.312 -2.405 1.00 3.00 N ATOM 294 CA ALA 74 22.567 26.389 -1.479 1.00 3.00 C ATOM 295 C ALA 74 23.703 26.492 -0.461 1.00 3.00 C ATOM 296 O ALA 74 24.099 25.492 0.128 1.00 3.00 O ATOM 297 N TYR 75 24.268 27.686 -0.318 1.00 3.00 N ATOM 298 CA TYR 75 25.361 27.927 0.627 1.00 3.00 C ATOM 299 C TYR 75 24.853 28.960 1.625 1.00 3.00 C ATOM 300 O TYR 75 24.673 30.124 1.274 1.00 3.00 O ATOM 301 N GLU 76 24.643 28.528 2.868 1.00 3.00 N ATOM 302 CA GLU 76 24.101 29.398 3.903 1.00 3.00 C ATOM 303 C GLU 76 24.979 29.769 5.098 1.00 3.00 C ATOM 304 O GLU 76 25.659 28.923 5.679 1.00 3.00 O ATOM 305 N TYR 77 24.899 31.045 5.468 1.00 3.00 N ATOM 306 CA TYR 77 25.608 31.616 6.607 1.00 3.00 C ATOM 307 C TYR 77 25.264 31.444 8.086 1.00 3.00 C ATOM 308 O TYR 77 24.650 30.445 8.473 1.00 3.00 O ATOM 309 N THR 78 25.624 32.407 8.925 1.00 3.00 N ATOM 310 CA THR 78 25.335 32.298 10.357 1.00 3.00 C ATOM 311 C THR 78 24.232 33.246 10.873 1.00 3.00 C ATOM 312 O THR 78 24.209 33.594 12.051 1.00 3.00 O ATOM 313 N LEU 79 23.302 33.629 9.995 1.00 3.00 N ATOM 314 CA LEU 79 22.232 34.553 10.371 1.00 3.00 C ATOM 315 C LEU 79 21.391 34.149 11.553 1.00 3.00 C ATOM 316 O LEU 79 20.986 34.990 12.366 1.00 3.00 O ATOM 317 N GLU 80 21.142 32.852 11.677 1.00 9.00 N ATOM 318 CA GLU 80 20.331 32.360 12.764 1.00 9.00 C ATOM 319 C GLU 80 20.938 32.752 14.104 1.00 9.00 C ATOM 320 O GLU 80 20.282 32.637 15.146 1.00 9.00 O ATOM 321 N ILE 81 22.177 33.227 14.089 1.00 3.00 N ATOM 322 CA ILE 81 22.834 33.619 15.342 1.00 3.00 C ATOM 323 C ILE 81 22.495 35.023 15.793 1.00 3.00 C ATOM 324 O ILE 81 22.663 35.334 16.972 1.00 3.00 O ATOM 325 N ASN 82 22.043 35.877 14.878 1.00 3.00 N ATOM 326 CA ASN 82 21.685 37.241 15.254 1.00 3.00 C ATOM 327 C ASN 82 20.342 37.689 14.663 1.00 3.00 C ATOM 328 O ASN 82 20.069 38.878 14.602 1.00 3.00 O ATOM 329 N GLY 83 19.527 36.721 14.236 1.00 3.00 N ATOM 330 CA GLY 83 18.219 36.959 13.631 1.00 3.00 C ATOM 331 C GLY 83 17.958 36.807 12.134 1.00 3.00 C ATOM 332 O GLY 83 17.053 37.448 11.602 1.00 3.00 O ATOM 333 N LYS 84 18.729 35.963 11.457 1.00 3.00 N ATOM 334 CA LYS 84 18.514 35.802 10.034 1.00 3.00 C ATOM 335 C LYS 84 19.550 34.983 9.305 1.00 3.00 C ATOM 336 O LYS 84 20.209 34.125 9.892 1.00 3.00 O ATOM 337 N SER 85 19.750 35.307 8.030 1.00 3.00 N ATOM 338 CA SER 85 20.695 34.563 7.211 1.00 3.00 C ATOM 339 C SER 85 21.000 35.200 5.870 1.00 3.00 C ATOM 340 O SER 85 20.348 36.149 5.438 1.00 3.00 O ATOM 341 N LEU 86 22.001 34.629 5.216 1.00 3.00 N ATOM 342 CA LEU 86 22.374 34.994 3.866 1.00 3.00 C ATOM 343 C LEU 86 22.497 33.638 3.192 1.00 3.00 C ATOM 344 O LEU 86 23.262 32.779 3.648 1.00 3.00 O ATOM 345 N LYS 87 21.676 33.415 2.173 1.00 3.00 N ATOM 346 CA LYS 87 21.706 32.167 1.424 1.00 3.00 C ATOM 347 C LYS 87 22.105 32.446 -0.010 1.00 3.00 C ATOM 348 O LYS 87 21.496 33.278 -0.695 1.00 3.00 O ATOM 349 N LYS 88 23.158 31.773 -0.444 1.00 3.00 N ATOM 350 CA LYS 88 23.647 31.898 -1.803 1.00 3.00 C ATOM 351 C LYS 88 23.199 30.657 -2.588 1.00 3.00 C ATOM 352 O LYS 88 23.275 29.537 -2.087 1.00 3.00 O ATOM 353 N TYR 89 22.697 30.874 -3.796 1.00 3.00 N ATOM 354 CA TYR 89 22.264 29.787 -4.665 1.00 3.00 C ATOM 355 C TYR 89 23.140 29.861 -5.897 1.00 3.00 C ATOM 356 O TYR 89 23.427 30.948 -6.389 1.00 3.00 O ATOM 357 N MET 90 23.594 28.710 -6.373 1.00 3.00 N ATOM 358 CA MET 90 24.444 28.670 -7.550 1.00 3.00 C ATOM 359 C MET 90 24.042 27.532 -8.474 1.00 3.00 C ATOM 360 O MET 90 24.044 26.365 -8.077 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 360 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 80.54 51.1 178 100.0 178 ARMSMC SECONDARY STRUCTURE . . 72.20 59.3 118 100.0 118 ARMSMC SURFACE . . . . . . . . 84.63 48.1 108 100.0 108 ARMSMC BURIED . . . . . . . . 73.80 55.7 70 100.0 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 75 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 66 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 14.46 (Number of atoms: 90) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 14.46 90 100.0 90 CRMSCA CRN = ALL/NP . . . . . 0.1606 CRMSCA SECONDARY STRUCTURE . . 12.35 59 100.0 59 CRMSCA SURFACE . . . . . . . . 15.57 55 100.0 55 CRMSCA BURIED . . . . . . . . 12.51 35 100.0 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 14.38 360 81.4 442 CRMSMC SECONDARY STRUCTURE . . 12.36 236 80.5 293 CRMSMC SURFACE . . . . . . . . 15.47 220 81.8 269 CRMSMC BURIED . . . . . . . . 12.48 140 80.9 173 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 356 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 316 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 252 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 204 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 152 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 14.38 360 50.3 716 CRMSALL SECONDARY STRUCTURE . . 12.36 236 48.4 488 CRMSALL SURFACE . . . . . . . . 15.47 220 51.9 424 CRMSALL BURIED . . . . . . . . 12.48 140 47.9 292 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.137 0.576 0.292 90 100.0 90 ERRCA SECONDARY STRUCTURE . . 8.320 0.535 0.268 59 100.0 59 ERRCA SURFACE . . . . . . . . 11.201 0.599 0.305 55 100.0 55 ERRCA BURIED . . . . . . . . 8.464 0.540 0.270 35 100.0 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.057 0.572 0.287 360 81.4 442 ERRMC SECONDARY STRUCTURE . . 8.307 0.534 0.267 236 80.5 293 ERRMC SURFACE . . . . . . . . 11.076 0.591 0.297 220 81.8 269 ERRMC BURIED . . . . . . . . 8.455 0.541 0.271 140 80.9 173 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 356 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 316 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 252 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 204 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 152 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 10.057 0.572 0.287 360 50.3 716 ERRALL SECONDARY STRUCTURE . . 8.307 0.534 0.267 236 48.4 488 ERRALL SURFACE . . . . . . . . 11.076 0.591 0.297 220 51.9 424 ERRALL BURIED . . . . . . . . 8.455 0.541 0.271 140 47.9 292 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 1 1 3 31 90 90 DISTCA CA (P) 0.00 1.11 1.11 3.33 34.44 90 DISTCA CA (RMS) 0.00 1.32 1.32 3.79 7.63 DISTCA ALL (N) 0 1 3 10 132 360 716 DISTALL ALL (P) 0.00 0.14 0.42 1.40 18.44 716 DISTALL ALL (RMS) 0.00 1.32 2.03 3.55 7.77 DISTALL END of the results output