####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 86 ( 344), selected 86 , name T0540AL396_1-D1 # Molecule2: number of CA atoms 90 ( 716), selected 86 , name T0540-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0540AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 86 1 - 90 4.81 4.81 LCS_AVERAGE: 95.56 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 21 4 - 24 1.72 6.42 LCS_AVERAGE: 16.61 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 14 73 - 86 0.94 5.42 LCS_AVERAGE: 9.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 86 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT M 1 M 1 3 4 86 3 3 9 13 15 19 22 31 36 48 56 61 68 71 71 75 77 78 81 83 LCS_GDT T 2 T 2 3 4 86 3 3 4 10 13 18 21 26 33 48 63 65 69 72 73 78 79 81 83 85 LCS_GDT D 3 D 3 3 7 86 3 3 4 13 21 26 33 38 56 62 63 71 71 75 78 78 79 82 83 85 LCS_GDT L 4 L 4 3 21 86 3 3 4 7 13 35 49 54 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 5 V 5 8 21 86 5 20 37 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT A 6 A 6 8 21 86 13 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 7 V 7 8 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT W 8 W 8 8 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT D 9 D 9 8 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 10 V 10 8 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT A 11 A 11 8 21 86 8 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT L 12 L 12 8 21 86 4 10 17 36 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT S 13 S 13 6 21 86 3 6 10 17 20 36 47 52 56 64 68 72 75 76 78 80 81 82 83 85 LCS_GDT D 14 D 14 10 21 86 9 23 37 45 48 51 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT G 15 G 15 10 21 86 5 19 37 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 16 V 16 10 21 86 9 23 37 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT H 17 H 17 10 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 18 K 18 10 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT I 19 I 19 10 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 20 E 20 10 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT F 21 F 21 10 21 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 22 E 22 10 21 86 13 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT H 23 H 23 10 21 86 6 24 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT G 24 G 24 5 21 86 3 4 10 36 44 50 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT T 25 T 25 3 3 86 3 4 5 5 5 9 11 12 17 23 28 43 58 71 73 80 81 82 83 85 LCS_GDT R 30 R 30 11 13 86 5 12 33 45 48 51 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 31 V 31 11 13 86 9 19 36 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 32 V 32 11 15 86 9 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT Y 33 Y 33 11 15 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 34 V 34 11 15 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT D 35 D 35 11 15 86 5 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT G 36 G 36 11 15 86 6 21 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 37 K 37 11 15 86 6 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 38 E 38 11 15 86 7 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 39 E 39 11 15 86 7 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT I 40 I 40 11 15 86 4 5 15 41 47 51 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT R 41 R 41 6 15 86 4 4 10 17 26 35 41 52 56 62 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 42 K 42 6 15 86 4 5 7 14 22 31 36 45 55 59 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 43 E 43 6 15 86 4 5 7 13 20 25 27 36 44 56 63 72 75 76 78 80 81 82 83 85 LCS_GDT W 44 W 44 6 15 86 4 5 7 12 18 25 27 32 37 43 54 60 70 74 77 80 81 82 83 85 LCS_GDT M 45 M 45 4 15 86 3 4 10 17 25 35 44 52 55 62 68 72 75 76 78 80 81 82 83 85 LCS_GDT F 46 F 46 4 15 86 3 6 10 14 22 25 30 39 53 58 63 69 74 76 78 80 81 82 83 85 LCS_GDT K 47 K 47 4 8 86 3 4 4 6 11 31 43 49 55 62 68 72 75 76 78 80 81 82 83 85 LCS_GDT L 48 L 48 4 8 86 3 4 4 4 9 12 30 49 55 62 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 49 V 49 9 10 86 6 19 34 43 48 51 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT G 50 G 50 9 10 86 8 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 51 K 51 9 10 86 3 20 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 52 E 52 9 10 86 7 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT T 53 T 53 9 10 86 4 25 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT F 54 F 54 9 10 86 5 28 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT Y 55 Y 55 9 10 86 5 10 30 43 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT V 56 V 56 9 10 86 5 10 30 43 47 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT G 57 G 57 9 10 86 5 7 14 24 39 46 51 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT A 58 A 58 5 12 86 3 4 7 15 17 35 49 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT A 59 A 59 5 12 86 3 7 9 16 24 39 49 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 60 K 60 5 12 86 3 7 11 17 24 31 42 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT T 61 T 61 9 12 86 3 7 9 10 24 31 44 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 62 K 62 9 12 86 3 4 9 10 12 13 34 56 63 67 68 71 75 76 78 80 81 82 83 85 LCS_GDT A 63 A 63 9 12 86 3 5 9 10 12 31 39 56 63 67 68 71 75 76 78 80 81 82 83 85 LCS_GDT T 64 T 64 9 12 86 6 7 11 17 24 31 45 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT I 65 I 65 9 12 86 6 7 9 10 12 31 44 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT N 66 N 66 9 12 86 6 7 9 10 12 31 42 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT I 67 I 67 9 12 86 6 7 9 10 12 18 42 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT D 68 D 68 9 12 86 6 7 9 10 12 24 42 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT A 69 A 69 9 12 86 6 7 9 10 12 24 42 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT I 70 I 70 4 12 86 3 5 5 9 12 14 21 34 53 64 66 69 72 75 77 80 81 82 83 85 LCS_GDT S 71 S 71 4 15 86 3 4 4 4 16 20 24 32 42 45 54 61 68 74 77 80 81 82 83 85 LCS_GDT G 72 G 72 4 15 86 3 4 4 6 8 20 23 35 42 51 55 57 70 74 77 80 81 82 83 85 LCS_GDT F 73 F 73 14 16 86 13 25 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT A 74 A 74 14 16 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT Y 75 Y 75 14 16 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 76 E 76 14 16 86 13 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT Y 77 Y 77 14 16 86 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT T 78 T 78 14 16 86 8 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT L 79 L 79 14 16 86 13 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT E 80 E 80 14 16 86 8 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT I 81 I 81 14 16 86 13 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT N 82 N 82 14 16 86 5 24 38 45 48 51 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT G 83 G 83 14 16 86 6 24 36 45 48 51 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 84 K 84 14 16 86 13 24 38 45 48 51 52 55 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT S 85 S 85 14 16 86 11 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT L 86 L 86 14 16 86 3 10 24 41 48 51 52 53 63 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 87 K 87 6 16 86 3 5 11 17 25 36 43 52 55 63 68 72 75 76 78 80 81 82 83 85 LCS_GDT K 88 K 88 6 16 86 3 8 16 24 34 48 51 53 57 67 68 72 75 76 78 80 81 82 83 85 LCS_GDT Y 89 Y 89 6 14 86 3 5 6 10 16 22 28 37 42 50 57 61 69 71 74 77 80 81 83 85 LCS_GDT M 90 M 90 3 14 86 0 3 3 21 24 34 41 49 53 59 68 71 73 76 78 78 80 82 83 85 LCS_AVERAGE LCS_A: 40.65 ( 9.78 16.61 95.56 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 14 30 38 45 48 51 52 56 63 67 68 72 75 76 78 80 81 82 83 85 GDT PERCENT_AT 15.56 33.33 42.22 50.00 53.33 56.67 57.78 62.22 70.00 74.44 75.56 80.00 83.33 84.44 86.67 88.89 90.00 91.11 92.22 94.44 GDT RMS_LOCAL 0.31 0.69 0.89 1.11 1.26 1.40 1.48 2.57 2.56 2.77 2.84 3.36 3.56 3.64 3.87 4.17 4.26 4.33 4.42 4.65 GDT RMS_ALL_AT 5.09 4.98 5.02 5.02 4.99 4.98 5.00 5.11 5.00 5.03 5.02 4.84 4.85 4.85 4.85 4.89 4.90 4.83 4.83 4.82 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA M 1 M 1 11.776 4 0.161 0.161 12.463 2.619 1.310 LGA T 2 T 2 9.729 3 0.307 0.307 10.767 0.833 0.476 LGA D 3 D 3 8.469 4 0.299 0.299 9.106 9.167 4.583 LGA L 4 L 4 4.585 4 0.462 0.462 5.522 47.619 23.810 LGA V 5 V 5 1.428 3 0.641 0.641 1.871 79.286 45.306 LGA A 6 A 6 0.353 1 0.049 0.049 0.488 100.000 80.000 LGA V 7 V 7 0.625 3 0.067 0.067 1.017 88.214 50.408 LGA W 8 W 8 0.541 10 0.023 0.023 0.725 90.476 25.850 LGA D 9 D 9 0.730 4 0.086 0.086 0.834 90.476 45.238 LGA V 10 V 10 1.001 3 0.107 0.107 1.001 88.214 50.408 LGA A 11 A 11 1.712 1 0.185 0.185 2.963 66.905 53.524 LGA L 12 L 12 3.557 4 0.071 0.071 5.093 39.524 19.762 LGA S 13 S 13 6.442 2 0.262 0.262 6.442 21.667 14.444 LGA D 14 D 14 3.824 4 0.072 0.072 4.590 40.357 20.179 LGA G 15 G 15 3.350 0 0.079 0.079 3.477 53.571 53.571 LGA V 16 V 16 2.677 3 0.295 0.295 3.592 53.690 30.680 LGA H 17 H 17 1.481 6 0.132 0.132 1.722 81.548 32.619 LGA K 18 K 18 1.283 5 0.067 0.067 1.478 81.429 36.190 LGA I 19 I 19 1.147 4 0.039 0.039 1.148 85.952 42.976 LGA E 20 E 20 0.691 5 0.036 0.036 0.795 90.476 40.212 LGA F 21 F 21 0.696 7 0.126 0.126 0.719 90.476 32.900 LGA E 22 E 22 1.180 5 0.033 0.033 1.180 85.952 38.201 LGA H 23 H 23 1.333 6 0.637 0.637 2.856 73.214 29.286 LGA G 24 G 24 4.026 0 0.575 0.575 5.612 33.690 33.690 LGA T 25 T 25 9.451 3 0.158 0.158 12.066 2.143 1.224 LGA R 30 R 30 2.070 7 0.506 0.506 4.040 57.857 21.039 LGA V 31 V 31 1.774 3 0.131 0.131 1.774 79.286 45.306 LGA V 32 V 32 1.462 3 0.042 0.042 1.528 79.286 45.306 LGA Y 33 Y 33 1.154 8 0.095 0.095 1.851 77.143 25.714 LGA V 34 V 34 1.719 3 0.025 0.025 1.719 77.143 44.082 LGA D 35 D 35 1.652 4 0.054 0.054 1.691 77.143 38.571 LGA G 36 G 36 1.610 0 0.249 0.249 2.442 70.833 70.833 LGA K 37 K 37 0.883 5 0.086 0.086 1.003 88.214 39.206 LGA E 38 E 38 0.863 5 0.107 0.107 0.914 90.476 40.212 LGA E 39 E 39 1.536 5 0.631 0.631 2.337 72.976 32.434 LGA I 40 I 40 3.543 4 0.175 0.175 7.018 32.381 16.190 LGA R 41 R 41 7.028 7 0.190 0.190 7.333 16.190 5.887 LGA K 42 K 42 8.997 5 0.636 0.636 9.757 2.381 1.058 LGA E 43 E 43 10.255 5 0.343 0.343 11.635 0.119 0.053 LGA W 44 W 44 12.943 10 0.072 0.072 12.943 0.000 0.000 LGA M 45 M 45 9.214 4 0.177 0.177 11.934 0.357 0.179 LGA F 46 F 46 12.379 7 0.580 0.580 12.379 0.000 0.000 LGA K 47 K 47 9.676 5 0.622 0.622 10.656 0.595 0.265 LGA L 48 L 48 8.985 4 0.598 0.598 9.288 4.762 2.381 LGA V 49 V 49 3.711 3 0.083 0.083 5.095 45.952 26.259 LGA G 50 G 50 2.109 0 0.296 0.296 2.453 64.762 64.762 LGA K 51 K 51 2.359 5 0.278 0.278 2.920 62.857 27.937 LGA E 52 E 52 1.225 5 0.160 0.160 1.832 79.286 35.238 LGA T 53 T 53 1.563 3 0.150 0.150 1.563 79.286 45.306 LGA F 54 F 54 1.105 7 0.190 0.190 1.596 79.286 28.831 LGA Y 55 Y 55 1.994 8 0.043 0.043 1.994 75.000 25.000 LGA V 56 V 56 2.450 3 0.126 0.126 2.608 62.857 35.918 LGA G 57 G 57 3.947 0 0.210 0.210 3.947 45.000 45.000 LGA A 58 A 58 4.328 1 0.287 0.287 4.708 38.810 31.048 LGA A 59 A 59 3.377 1 0.697 0.697 3.377 50.000 40.000 LGA K 60 K 60 4.336 5 0.196 0.196 4.464 38.690 17.196 LGA T 61 T 61 4.042 3 0.169 0.169 4.042 41.786 23.878 LGA K 62 K 62 4.731 5 0.053 0.053 4.800 31.429 13.968 LGA A 63 A 63 4.818 1 0.175 0.175 5.097 30.119 24.095 LGA T 64 T 64 3.761 3 0.168 0.168 4.200 41.786 23.878 LGA I 65 I 65 4.088 4 0.093 0.093 4.436 38.690 19.345 LGA N 66 N 66 4.075 4 0.104 0.104 4.477 37.143 18.571 LGA I 67 I 67 4.416 4 0.070 0.070 4.537 35.714 17.857 LGA D 68 D 68 4.092 4 0.020 0.020 4.362 37.143 18.571 LGA A 69 A 69 4.217 1 0.192 0.192 5.471 31.667 25.333 LGA I 70 I 70 8.264 4 0.581 0.581 8.849 7.381 3.690 LGA S 71 S 71 10.451 2 0.512 0.512 10.901 0.357 0.238 LGA G 72 G 72 10.035 0 0.085 0.085 10.035 5.119 5.119 LGA F 73 F 73 2.840 7 0.440 0.440 5.269 55.238 20.087 LGA A 74 A 74 2.510 1 0.198 0.198 2.789 59.048 47.238 LGA Y 75 Y 75 2.196 8 0.034 0.034 2.256 64.762 21.587 LGA E 76 E 76 1.866 5 0.091 0.091 2.107 68.810 30.582 LGA Y 77 Y 77 1.903 8 0.067 0.067 1.903 75.000 25.000 LGA T 78 T 78 1.784 3 0.085 0.085 2.116 70.833 40.476 LGA L 79 L 79 1.789 4 0.036 0.036 1.914 72.857 36.429 LGA E 80 E 80 2.336 5 0.019 0.019 2.358 64.762 28.783 LGA I 81 I 81 2.500 4 0.096 0.096 2.973 60.952 30.476 LGA N 82 N 82 2.949 4 0.020 0.020 3.176 53.571 26.786 LGA G 83 G 83 3.270 0 0.225 0.225 3.813 48.333 48.333 LGA K 84 K 84 3.013 5 0.133 0.133 3.013 59.167 26.296 LGA S 85 S 85 2.185 2 0.069 0.069 4.192 52.262 34.841 LGA L 86 L 86 4.258 4 0.021 0.021 4.258 43.571 21.786 LGA K 87 K 87 6.445 5 0.013 0.013 6.665 17.262 7.672 LGA K 88 K 88 5.407 5 0.030 0.030 8.595 15.119 6.720 LGA Y 89 Y 89 9.683 8 0.650 0.650 9.683 3.810 1.270 LGA M 90 M 90 7.582 4 0.198 0.198 10.134 3.333 1.667 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 86 344 344 100.00 690 344 49.86 90 SUMMARY(RMSD_GDC): 4.807 4.730 4.730 47.483 25.651 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 86 90 4.0 56 2.57 58.611 50.060 2.101 LGA_LOCAL RMSD: 2.566 Number of atoms: 56 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 5.114 Number of assigned atoms: 86 Std_ASGN_ATOMS RMSD: 4.807 Standard rmsd on all 86 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.445652 * X + 0.751610 * Y + 0.486289 * Z + 37.574478 Y_new = -0.293477 * X + -0.635858 * Y + 0.713832 * Z + 21.828844 Z_new = 0.845734 * X + 0.175406 * Y + 0.503952 * Z + 0.390741 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.559241 -1.007938 0.334946 [DEG: -146.6337 -57.7506 19.1910 ] ZXZ: 2.543570 1.042628 1.366295 [DEG: 145.7358 59.7382 78.2829 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0540AL396_1-D1 REMARK 2: T0540-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0540AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 86 90 4.0 56 2.57 50.060 4.81 REMARK ---------------------------------------------------------- MOLECULE T0540AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kd2_A ATOM 1 N MET 1 28.449 5.294 0.959 1.00 0.00 N ATOM 2 CA MET 1 28.038 6.154 2.063 1.00 0.00 C ATOM 3 C MET 1 29.049 7.275 2.283 1.00 0.00 C ATOM 4 O MET 1 30.080 7.078 2.926 1.00 0.00 O ATOM 5 N THR 2 28.744 8.453 1.748 1.00 0.00 N ATOM 6 CA THR 2 29.628 9.606 1.882 1.00 0.00 C ATOM 7 C THR 2 28.914 10.758 2.582 1.00 0.00 C ATOM 8 O THR 2 29.133 11.926 2.262 1.00 0.00 O ATOM 9 N ASP 3 28.060 10.420 3.542 1.00 0.00 N ATOM 10 CA ASP 3 27.313 11.424 4.291 1.00 0.00 C ATOM 11 C ASP 3 28.234 12.200 5.228 1.00 0.00 C ATOM 12 O ASP 3 28.011 13.380 5.498 1.00 0.00 O ATOM 13 N LEU 4 29.271 11.530 5.720 1.00 0.00 N ATOM 14 CA LEU 4 30.225 12.155 6.625 1.00 0.00 C ATOM 15 C LEU 4 31.578 12.351 5.950 1.00 0.00 C ATOM 16 O LEU 4 32.621 12.333 6.606 1.00 0.00 O ATOM 17 N VAL 5 31.556 12.537 4.633 1.00 0.00 N ATOM 18 CA VAL 5 32.781 12.734 3.869 1.00 0.00 C ATOM 19 C VAL 5 32.492 13.406 2.531 1.00 0.00 C ATOM 20 O VAL 5 31.637 12.950 1.770 1.00 0.00 O ATOM 21 N ALA 6 33.208 14.489 2.249 1.00 0.00 N ATOM 22 CA ALA 6 33.025 15.224 1.004 1.00 0.00 C ATOM 23 C ALA 6 34.188 14.972 0.048 1.00 0.00 C ATOM 24 O ALA 6 35.305 14.679 0.475 1.00 0.00 O ATOM 25 N VAL 7 33.917 15.088 -1.248 1.00 0.00 N ATOM 26 CA VAL 7 34.939 14.873 -2.265 1.00 0.00 C ATOM 27 C VAL 7 34.804 15.878 -3.401 1.00 0.00 C ATOM 28 O VAL 7 33.720 16.407 -3.650 1.00 0.00 O ATOM 29 N TRP 8 35.909 16.138 -4.090 1.00 0.00 N ATOM 30 CA TRP 8 35.913 17.081 -5.203 1.00 0.00 C ATOM 31 C TRP 8 36.982 16.711 -6.226 1.00 0.00 C ATOM 32 O TRP 8 38.133 16.460 -5.872 1.00 0.00 O ATOM 33 N ASP 9 36.592 16.680 -7.497 1.00 0.00 N ATOM 34 CA ASP 9 37.517 16.342 -8.572 1.00 0.00 C ATOM 35 C ASP 9 37.771 17.542 -9.475 1.00 0.00 C ATOM 36 O ASP 9 36.866 18.022 -10.158 1.00 0.00 O ATOM 37 N VAL 10 39.010 18.024 -9.475 1.00 0.00 N ATOM 38 CA VAL 10 39.385 19.170 -10.296 1.00 0.00 C ATOM 39 C VAL 10 40.760 18.963 -10.924 1.00 0.00 C ATOM 40 O VAL 10 41.642 18.350 -10.323 1.00 0.00 O ATOM 41 N ALA 11 40.934 19.479 -12.137 1.00 0.00 N ATOM 42 CA ALA 11 42.202 19.350 -12.847 1.00 0.00 C ATOM 43 C ALA 11 43.256 20.275 -12.245 1.00 0.00 C ATOM 44 O ALA 11 43.358 21.445 -12.619 1.00 0.00 O ATOM 45 N LEU 12 44.040 19.744 -11.314 1.00 0.00 N ATOM 46 CA LEU 12 45.087 20.520 -10.660 1.00 0.00 C ATOM 47 C LEU 12 46.435 19.814 -10.766 1.00 0.00 C ATOM 48 O LEU 12 46.498 18.589 -10.870 1.00 0.00 O ATOM 49 N SER 13 47.510 20.594 -10.735 1.00 0.00 N ATOM 50 CA SER 13 48.857 20.043 -10.824 1.00 0.00 C ATOM 51 C SER 13 49.085 19.379 -12.179 1.00 0.00 C ATOM 52 O SER 13 50.034 18.618 -12.356 1.00 0.00 O ATOM 53 N ASP 14 48.204 19.671 -13.132 1.00 0.00 N ATOM 54 CA ASP 14 48.325 19.092 -14.457 1.00 0.00 C ATOM 55 C ASP 14 47.638 17.746 -14.566 1.00 0.00 C ATOM 56 O ASP 14 47.675 17.108 -15.618 1.00 0.00 O ATOM 57 N GLY 15 47.011 17.312 -13.477 1.00 0.00 N ATOM 58 CA GLY 15 46.315 16.031 -13.456 1.00 0.00 C ATOM 59 C GLY 15 45.000 16.139 -12.689 1.00 0.00 C ATOM 60 O GLY 15 44.707 17.167 -12.078 1.00 0.00 O ATOM 61 N VAL 16 44.212 15.070 -12.725 1.00 0.00 N ATOM 62 CA VAL 16 42.929 15.043 -12.033 1.00 0.00 C ATOM 63 C VAL 16 43.127 15.017 -10.520 1.00 0.00 C ATOM 64 O VAL 16 43.185 13.949 -9.909 1.00 0.00 O ATOM 65 N HIS 17 43.232 16.199 -9.922 1.00 0.00 N ATOM 66 CA HIS 17 43.425 16.312 -8.481 1.00 0.00 C ATOM 67 C HIS 17 42.161 15.906 -7.729 1.00 0.00 C ATOM 68 O HIS 17 41.077 16.427 -7.991 1.00 0.00 O ATOM 69 N LYS 18 42.310 14.977 -6.791 1.00 0.00 N ATOM 70 CA LYS 18 41.180 14.503 -5.999 1.00 0.00 C ATOM 71 C LYS 18 41.267 15.018 -4.565 1.00 0.00 C ATOM 72 O LYS 18 42.202 14.690 -3.833 1.00 0.00 O ATOM 73 N ILE 19 40.288 15.825 -4.171 1.00 0.00 N ATOM 74 CA ILE 19 40.253 16.385 -2.825 1.00 0.00 C ATOM 75 C ILE 19 39.131 15.764 -2.000 1.00 0.00 C ATOM 76 O ILE 19 38.033 15.533 -2.503 1.00 0.00 O ATOM 77 N GLU 20 39.416 15.497 -0.730 1.00 0.00 N ATOM 78 CA GLU 20 38.431 14.904 0.166 1.00 0.00 C ATOM 79 C GLU 20 38.430 15.603 1.521 1.00 0.00 C ATOM 80 O GLU 20 39.484 15.941 2.058 1.00 0.00 O ATOM 81 N PHE 21 37.238 15.816 2.069 1.00 0.00 N ATOM 82 CA PHE 21 37.098 16.474 3.363 1.00 0.00 C ATOM 83 C PHE 21 36.519 15.518 4.401 1.00 0.00 C ATOM 84 O PHE 21 35.310 15.297 4.447 1.00 0.00 O ATOM 85 N GLU 22 37.391 14.956 5.233 1.00 0.00 N ATOM 86 CA GLU 22 36.964 14.025 6.271 1.00 0.00 C ATOM 87 C GLU 22 36.278 14.764 7.416 1.00 0.00 C ATOM 88 O GLU 22 36.763 15.793 7.886 1.00 0.00 O ATOM 89 N HIS 23 35.143 14.232 7.859 1.00 0.00 N ATOM 90 CA HIS 23 34.388 14.838 8.948 1.00 0.00 C ATOM 91 C HIS 23 35.081 14.605 10.287 1.00 0.00 C ATOM 92 O HIS 23 34.798 15.288 11.271 1.00 0.00 O ATOM 93 N GLY 24 35.989 13.636 10.316 1.00 0.00 N ATOM 94 CA GLY 24 36.724 13.314 11.534 1.00 0.00 C ATOM 95 C GLY 24 37.347 14.567 12.141 1.00 0.00 C ATOM 96 O GLY 24 37.154 14.861 13.321 1.00 0.00 O ATOM 97 N THR 25 38.097 15.303 11.326 1.00 0.00 N ATOM 98 CA THR 25 38.750 16.523 11.782 1.00 0.00 C ATOM 99 C THR 25 38.573 17.653 10.774 1.00 0.00 C ATOM 100 O THR 25 39.290 18.652 10.814 1.00 0.00 O ATOM 101 N ARG 30 37.611 17.487 9.871 1.00 0.00 N ATOM 102 CA ARG 30 37.339 18.495 8.853 1.00 0.00 C ATOM 103 C ARG 30 38.609 18.852 8.087 1.00 0.00 C ATOM 104 O ARG 30 38.752 19.970 7.592 1.00 0.00 O ATOM 105 N VAL 31 39.527 17.897 7.995 1.00 0.00 N ATOM 106 CA VAL 31 40.784 18.110 7.289 1.00 0.00 C ATOM 107 C VAL 31 40.625 17.833 5.798 1.00 0.00 C ATOM 108 O VAL 31 39.695 17.143 5.380 1.00 0.00 O ATOM 109 N VAL 32 41.538 18.376 4.999 1.00 0.00 N ATOM 110 CA VAL 32 41.499 18.187 3.554 1.00 0.00 C ATOM 111 C VAL 32 42.565 17.196 3.100 1.00 0.00 C ATOM 112 O VAL 32 43.720 17.276 3.520 1.00 0.00 O ATOM 113 N TYR 33 42.170 16.265 2.239 1.00 0.00 N ATOM 114 CA TYR 33 43.092 15.258 1.727 1.00 0.00 C ATOM 115 C TYR 33 43.281 15.406 0.222 1.00 0.00 C ATOM 116 O TYR 33 42.321 15.314 -0.545 1.00 0.00 O ATOM 117 N VAL 34 44.521 15.637 -0.195 1.00 0.00 N ATOM 118 CA VAL 34 44.833 15.800 -1.610 1.00 0.00 C ATOM 119 C VAL 34 46.101 15.037 -1.978 1.00 0.00 C ATOM 120 O VAL 34 47.117 15.134 -1.292 1.00 0.00 O ATOM 121 N ASP 35 46.034 14.275 -3.065 1.00 0.00 N ATOM 122 CA ASP 35 47.176 13.493 -3.524 1.00 0.00 C ATOM 123 C ASP 35 47.759 12.663 -2.383 1.00 0.00 C ATOM 124 O ASP 35 48.970 12.653 -2.165 1.00 0.00 O ATOM 125 N GLY 36 46.888 11.968 -1.659 1.00 0.00 N ATOM 126 CA GLY 36 47.334 11.145 -0.551 1.00 0.00 C ATOM 127 C GLY 36 48.262 11.890 0.390 1.00 0.00 C ATOM 128 O GLY 36 49.321 11.383 0.757 1.00 0.00 O ATOM 129 N LYS 37 47.864 13.097 0.776 1.00 0.00 N ATOM 130 CA LYS 37 48.670 13.915 1.676 1.00 0.00 C ATOM 131 C LYS 37 47.787 14.843 2.505 1.00 0.00 C ATOM 132 O LYS 37 47.148 15.750 1.971 1.00 0.00 O ATOM 133 N GLU 38 47.756 14.610 3.813 1.00 0.00 N ATOM 134 CA GLU 38 46.954 15.425 4.717 1.00 0.00 C ATOM 135 C GLU 38 47.280 16.906 4.549 1.00 0.00 C ATOM 136 O GLU 38 48.293 17.389 5.053 1.00 0.00 O ATOM 137 N GLU 39 46.414 17.621 3.838 1.00 0.00 N ATOM 138 CA GLU 39 46.609 19.048 3.607 1.00 0.00 C ATOM 139 C GLU 39 46.627 19.815 4.926 1.00 0.00 C ATOM 140 O GLU 39 46.307 19.264 5.977 1.00 0.00 O ATOM 141 N ILE 40 47.004 21.088 4.859 1.00 0.00 N ATOM 142 CA ILE 40 47.064 21.929 6.049 1.00 0.00 C ATOM 143 C ILE 40 46.117 23.119 5.924 1.00 0.00 C ATOM 144 O ILE 40 46.375 24.057 5.169 1.00 0.00 O ATOM 145 N ARG 41 45.016 23.072 6.667 1.00 0.00 N ATOM 146 CA ARG 41 44.029 24.144 6.639 1.00 0.00 C ATOM 147 C ARG 41 44.260 25.136 7.773 1.00 0.00 C ATOM 148 O ARG 41 45.237 25.027 8.514 1.00 0.00 O ATOM 149 N LYS 42 43.358 26.102 7.901 1.00 0.00 N ATOM 150 CA LYS 42 43.463 27.113 8.947 1.00 0.00 C ATOM 151 C LYS 42 42.638 26.725 10.170 1.00 0.00 C ATOM 152 O LYS 42 43.062 26.930 11.306 1.00 0.00 O ATOM 153 N GLU 43 41.458 26.164 9.928 1.00 0.00 N ATOM 154 CA GLU 43 40.592 25.758 11.019 1.00 0.00 C ATOM 155 C GLU 43 40.016 26.941 11.773 1.00 0.00 C ATOM 156 O GLU 43 39.918 26.914 13.000 1.00 0.00 O ATOM 157 N TRP 44 39.635 27.980 11.038 1.00 0.00 N ATOM 158 CA TRP 44 39.069 29.178 11.646 1.00 0.00 C ATOM 159 C TRP 44 37.559 29.038 11.821 1.00 0.00 C ATOM 160 O TRP 44 36.821 28.897 10.846 1.00 0.00 O ATOM 161 N MET 45 37.108 29.077 13.070 1.00 0.00 N ATOM 162 CA MET 45 35.687 28.952 13.374 1.00 0.00 C ATOM 163 C MET 45 35.040 30.327 13.523 1.00 0.00 C ATOM 164 O MET 45 35.359 31.079 14.444 1.00 0.00 O ATOM 165 N PHE 46 34.130 30.649 12.609 1.00 0.00 N ATOM 166 CA PHE 46 33.437 31.931 12.638 1.00 0.00 C ATOM 167 C PHE 46 32.118 31.826 13.394 1.00 0.00 C ATOM 168 O PHE 46 31.769 30.765 13.910 1.00 0.00 O ATOM 169 N LYS 47 31.388 32.935 13.454 1.00 0.00 N ATOM 170 CA LYS 47 30.105 32.968 14.146 1.00 0.00 C ATOM 171 C LYS 47 29.166 31.896 13.601 1.00 0.00 C ATOM 172 O LYS 47 28.364 31.324 14.341 1.00 0.00 O ATOM 173 N LEU 48 29.271 31.629 12.304 1.00 0.00 N ATOM 174 CA LEU 48 28.431 30.625 11.660 1.00 0.00 C ATOM 175 C LEU 48 29.140 30.017 10.454 1.00 0.00 C ATOM 176 O LEU 48 29.202 30.625 9.385 1.00 0.00 O ATOM 177 N VAL 49 29.675 28.813 10.633 1.00 0.00 N ATOM 178 CA VAL 49 30.374 28.143 9.552 1.00 0.00 C ATOM 179 C VAL 49 31.862 28.018 9.813 1.00 0.00 C ATOM 180 O VAL 49 32.362 28.484 10.838 1.00 0.00 O ATOM 181 N GLY 50 32.573 27.385 8.886 1.00 0.00 N ATOM 182 CA GLY 50 34.012 27.196 9.021 1.00 0.00 C ATOM 183 C GLY 50 34.733 27.509 7.715 1.00 0.00 C ATOM 184 O GLY 50 34.348 27.023 6.652 1.00 0.00 O ATOM 185 N LYS 51 35.781 28.322 7.802 1.00 0.00 N ATOM 186 CA LYS 51 36.555 28.699 6.625 1.00 0.00 C ATOM 187 C LYS 51 37.904 27.986 6.611 1.00 0.00 C ATOM 188 O LYS 51 38.863 28.433 7.241 1.00 0.00 O ATOM 189 N GLU 52 37.971 26.872 5.887 1.00 0.00 N ATOM 190 CA GLU 52 39.200 26.096 5.791 1.00 0.00 C ATOM 191 C GLU 52 40.163 26.713 4.783 1.00 0.00 C ATOM 192 O GLU 52 39.917 26.686 3.577 1.00 0.00 O ATOM 193 N THR 53 41.261 27.269 5.285 1.00 0.00 N ATOM 194 CA THR 53 42.263 27.893 4.428 1.00 0.00 C ATOM 195 C THR 53 43.495 27.003 4.295 1.00 0.00 C ATOM 196 O THR 53 44.299 26.897 5.221 1.00 0.00 O ATOM 197 N PHE 54 43.636 26.365 3.138 1.00 0.00 N ATOM 198 CA PHE 54 44.768 25.482 2.885 1.00 0.00 C ATOM 199 C PHE 54 45.493 25.882 1.603 1.00 0.00 C ATOM 200 O PHE 54 44.866 26.113 0.569 1.00 0.00 O ATOM 201 N TYR 55 46.818 25.961 1.680 1.00 0.00 N ATOM 202 CA TYR 55 47.628 26.337 0.527 1.00 0.00 C ATOM 203 C TYR 55 47.896 25.130 -0.366 1.00 0.00 C ATOM 204 O TYR 55 48.061 24.010 0.117 1.00 0.00 O ATOM 205 N VAL 56 47.936 25.366 -1.674 1.00 0.00 N ATOM 206 CA VAL 56 48.183 24.299 -2.636 1.00 0.00 C ATOM 207 C VAL 56 49.203 24.731 -3.685 1.00 0.00 C ATOM 208 O VAL 56 48.863 25.406 -4.656 1.00 0.00 O ATOM 209 N GLY 57 50.457 24.336 -3.481 1.00 0.00 N ATOM 210 CA GLY 57 51.506 24.691 -4.417 1.00 0.00 C ATOM 211 C GLY 57 51.552 26.179 -4.702 1.00 0.00 C ATOM 212 O GLY 57 51.760 26.985 -3.795 1.00 0.00 O ATOM 213 N ALA 58 51.358 26.546 -5.965 1.00 0.00 N ATOM 214 CA ALA 58 51.380 27.947 -6.366 1.00 0.00 C ATOM 215 C ALA 58 49.963 28.490 -6.522 1.00 0.00 C ATOM 216 O ALA 58 49.721 29.410 -7.304 1.00 0.00 O ATOM 217 N ALA 59 49.029 27.916 -5.769 1.00 0.00 N ATOM 218 CA ALA 59 47.636 28.343 -5.822 1.00 0.00 C ATOM 219 C ALA 59 47.086 28.578 -4.419 1.00 0.00 C ATOM 220 O ALA 59 47.688 28.163 -3.428 1.00 0.00 O ATOM 221 N LYS 60 45.939 29.244 -4.341 1.00 0.00 N ATOM 222 CA LYS 60 45.308 29.533 -3.059 1.00 0.00 C ATOM 223 C LYS 60 43.879 29.002 -3.024 1.00 0.00 C ATOM 224 O LYS 60 42.934 29.711 -3.374 1.00 0.00 O ATOM 225 N THR 61 43.727 27.752 -2.604 1.00 0.00 N ATOM 226 CA THR 61 42.412 27.125 -2.526 1.00 0.00 C ATOM 227 C THR 61 41.868 27.176 -1.102 1.00 0.00 C ATOM 228 O THR 61 42.570 27.577 -0.173 1.00 0.00 O ATOM 229 N LYS 62 40.615 26.770 -0.938 1.00 0.00 N ATOM 230 CA LYS 62 39.975 26.774 0.372 1.00 0.00 C ATOM 231 C LYS 62 38.584 26.151 0.301 1.00 0.00 C ATOM 232 O LYS 62 37.879 26.292 -0.699 1.00 0.00 O ATOM 233 N ALA 63 38.196 25.463 1.369 1.00 0.00 N ATOM 234 CA ALA 63 36.889 24.820 1.431 1.00 0.00 C ATOM 235 C ALA 63 35.883 25.690 2.178 1.00 0.00 C ATOM 236 O ALA 63 35.989 25.879 3.389 1.00 0.00 O ATOM 237 N THR 64 34.905 26.215 1.446 1.00 0.00 N ATOM 238 CA THR 64 33.877 27.063 2.039 1.00 0.00 C ATOM 239 C THR 64 32.806 26.220 2.724 1.00 0.00 C ATOM 240 O THR 64 31.942 25.643 2.065 1.00 0.00 O ATOM 241 N ILE 65 32.868 26.155 4.049 1.00 0.00 N ATOM 242 CA ILE 65 31.902 25.385 4.823 1.00 0.00 C ATOM 243 C ILE 65 30.769 26.274 5.325 1.00 0.00 C ATOM 244 O ILE 65 30.976 27.448 5.630 1.00 0.00 O ATOM 245 N ASN 66 29.570 25.706 5.408 1.00 0.00 N ATOM 246 CA ASN 66 28.403 26.447 5.874 1.00 0.00 C ATOM 247 C ASN 66 27.478 25.556 6.695 1.00 0.00 C ATOM 248 O ASN 66 26.980 24.542 6.205 1.00 0.00 O ATOM 249 N ILE 67 27.252 25.942 7.946 1.00 0.00 N ATOM 250 CA ILE 67 26.388 25.175 8.838 1.00 0.00 C ATOM 251 C ILE 67 24.932 25.604 8.684 1.00 0.00 C ATOM 252 O ILE 67 24.634 26.789 8.531 1.00 0.00 O ATOM 253 N ASP 68 24.028 24.630 8.725 1.00 0.00 N ATOM 254 CA ASP 68 22.603 24.904 8.585 1.00 0.00 C ATOM 255 C ASP 68 21.802 24.182 9.665 1.00 0.00 C ATOM 256 O ASP 68 22.183 23.104 10.118 1.00 0.00 O ATOM 257 N ALA 69 20.691 24.786 10.073 1.00 0.00 N ATOM 258 CA ALA 69 19.853 24.189 11.096 1.00 0.00 C ATOM 259 C ALA 69 19.882 24.968 12.396 1.00 0.00 C ATOM 260 O ALA 69 20.291 26.129 12.425 1.00 0.00 O ATOM 261 N ILE 70 19.444 24.330 13.476 1.00 0.00 N ATOM 262 CA ILE 70 19.420 24.969 14.786 1.00 0.00 C ATOM 263 C ILE 70 20.812 25.448 15.184 1.00 0.00 C ATOM 264 O ILE 70 20.978 26.567 15.670 1.00 0.00 O ATOM 265 N SER 71 21.809 24.595 14.973 1.00 0.00 N ATOM 266 CA SER 71 23.187 24.933 15.310 1.00 0.00 C ATOM 267 C SER 71 24.166 24.143 14.446 1.00 0.00 C ATOM 268 O SER 71 24.955 24.720 13.697 1.00 0.00 O ATOM 269 N GLY 72 24.110 22.820 14.556 1.00 0.00 N ATOM 270 CA GLY 72 24.991 21.950 13.787 1.00 0.00 C ATOM 271 C GLY 72 24.223 20.756 13.229 1.00 0.00 C ATOM 272 O GLY 72 24.744 19.641 13.177 1.00 0.00 O ATOM 273 N PHE 73 22.984 20.996 12.811 1.00 0.00 N ATOM 274 CA PHE 73 22.147 19.940 12.256 1.00 0.00 C ATOM 275 C PHE 73 22.753 19.383 10.971 1.00 0.00 C ATOM 276 O PHE 73 23.097 18.205 10.894 1.00 0.00 O ATOM 277 N ALA 74 22.880 20.241 9.964 1.00 0.00 N ATOM 278 CA ALA 74 23.443 19.818 8.695 1.00 0.00 C ATOM 279 C ALA 74 24.451 20.809 8.149 1.00 0.00 C ATOM 280 O ALA 74 24.131 21.981 7.943 1.00 0.00 O ATOM 281 N TYR 75 25.672 20.341 7.913 1.00 0.00 N ATOM 282 CA TYR 75 26.730 21.196 7.389 1.00 0.00 C ATOM 283 C TYR 75 27.087 20.811 5.957 1.00 0.00 C ATOM 284 O TYR 75 27.060 19.635 5.594 1.00 0.00 O ATOM 285 N GLU 76 27.422 21.810 5.148 1.00 0.00 N ATOM 286 CA GLU 76 27.789 21.576 3.757 1.00 0.00 C ATOM 287 C GLU 76 29.102 22.269 3.409 1.00 0.00 C ATOM 288 O GLU 76 29.266 23.466 3.647 1.00 0.00 O ATOM 289 N TYR 77 30.034 21.509 2.843 1.00 0.00 N ATOM 290 CA TYR 77 31.333 22.052 2.460 1.00 0.00 C ATOM 291 C TYR 77 31.420 22.236 0.948 1.00 0.00 C ATOM 292 O TYR 77 31.004 21.368 0.181 1.00 0.00 O ATOM 293 N THR 78 31.963 23.374 0.525 1.00 0.00 N ATOM 294 CA THR 78 32.102 23.673 -0.894 1.00 0.00 C ATOM 295 C THR 78 33.532 24.086 -1.231 1.00 0.00 C ATOM 296 O THR 78 33.961 25.195 -0.907 1.00 0.00 O ATOM 297 N LEU 79 34.263 23.188 -1.882 1.00 0.00 N ATOM 298 CA LEU 79 35.645 23.460 -2.264 1.00 0.00 C ATOM 299 C LEU 79 35.715 24.587 -3.288 1.00 0.00 C ATOM 300 O LEU 79 34.895 24.659 -4.204 1.00 0.00 O ATOM 301 N GLU 80 36.701 25.465 -3.129 1.00 0.00 N ATOM 302 CA GLU 80 36.879 26.586 -4.042 1.00 0.00 C ATOM 303 C GLU 80 38.351 26.783 -4.388 1.00 0.00 C ATOM 304 O GLU 80 39.206 26.842 -3.505 1.00 0.00 O ATOM 305 N ILE 81 38.640 26.888 -5.682 1.00 0.00 N ATOM 306 CA ILE 81 40.009 27.082 -6.146 1.00 0.00 C ATOM 307 C ILE 81 40.116 28.311 -7.042 1.00 0.00 C ATOM 308 O ILE 81 39.533 28.355 -8.126 1.00 0.00 O ATOM 309 N ASN 82 40.865 29.307 -6.582 1.00 0.00 N ATOM 310 CA ASN 82 41.050 30.537 -7.343 1.00 0.00 C ATOM 311 C ASN 82 39.726 31.274 -7.516 1.00 0.00 C ATOM 312 O ASN 82 39.386 31.711 -8.615 1.00 0.00 O ATOM 313 N GLY 83 38.981 31.407 -6.422 1.00 0.00 N ATOM 314 CA GLY 83 37.693 32.090 -6.454 1.00 0.00 C ATOM 315 C GLY 83 36.743 31.415 -7.439 1.00 0.00 C ATOM 316 O GLY 83 36.042 32.085 -8.199 1.00 0.00 O ATOM 317 N LYS 84 36.727 30.087 -7.421 1.00 0.00 N ATOM 318 CA LYS 84 35.865 29.321 -8.314 1.00 0.00 C ATOM 319 C LYS 84 35.244 28.134 -7.584 1.00 0.00 C ATOM 320 O LYS 84 35.952 27.312 -7.004 1.00 0.00 O ATOM 321 N SER 85 33.917 28.054 -7.616 1.00 0.00 N ATOM 322 CA SER 85 33.202 26.968 -6.956 1.00 0.00 C ATOM 323 C SER 85 33.574 25.620 -7.567 1.00 0.00 C ATOM 324 O SER 85 33.832 25.521 -8.768 1.00 0.00 O ATOM 325 N LEU 86 33.601 24.587 -6.734 1.00 0.00 N ATOM 326 CA LEU 86 33.941 23.245 -7.191 1.00 0.00 C ATOM 327 C LEU 86 32.802 22.266 -6.923 1.00 0.00 C ATOM 328 O LEU 86 32.258 22.197 -5.821 1.00 0.00 O ATOM 329 N LYS 87 32.433 21.490 -7.952 1.00 0.00 N ATOM 330 CA LYS 87 31.358 20.500 -7.851 1.00 0.00 C ATOM 331 C LYS 87 31.740 19.317 -6.969 1.00 0.00 C ATOM 332 O LYS 87 32.836 18.772 -7.088 1.00 0.00 O ATOM 333 N LYS 88 30.828 18.925 -6.084 1.00 0.00 N ATOM 334 CA LYS 88 31.071 17.805 -5.182 1.00 0.00 C ATOM 335 C LYS 88 30.583 16.496 -5.794 1.00 0.00 C ATOM 336 O LYS 88 29.654 16.485 -6.603 1.00 0.00 O ATOM 337 N TYR 89 31.215 15.394 -5.404 1.00 0.00 N ATOM 338 CA TYR 89 30.845 14.079 -5.914 1.00 0.00 C ATOM 339 C TYR 89 29.349 13.832 -5.752 1.00 0.00 C ATOM 340 O TYR 89 28.712 13.220 -6.610 1.00 0.00 O ATOM 341 N MET 90 28.792 14.314 -4.645 1.00 0.00 N ATOM 342 CA MET 90 27.371 14.146 -4.370 1.00 0.00 C ATOM 343 C MET 90 26.524 14.606 -5.551 1.00 0.00 C ATOM 344 O MET 90 26.567 15.773 -5.940 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 344 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 64.70 50.0 168 94.4 178 ARMSMC SECONDARY STRUCTURE . . 50.09 61.5 117 99.2 118 ARMSMC SURFACE . . . . . . . . 73.11 42.7 103 95.4 108 ARMSMC BURIED . . . . . . . . 48.47 61.5 65 92.9 70 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 75 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 66 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 52 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 44 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 31 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 55 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 46 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 39 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 33 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 22 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 24 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 24 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 18 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 6 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 13 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 10 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 2 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 4.81 (Number of atoms: 86) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 4.81 86 95.6 90 CRMSCA CRN = ALL/NP . . . . . 0.0559 CRMSCA SECONDARY STRUCTURE . . 3.33 59 100.0 59 CRMSCA SURFACE . . . . . . . . 5.58 53 96.4 55 CRMSCA BURIED . . . . . . . . 3.20 33 94.3 35 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 4.73 344 77.8 442 CRMSMC SECONDARY STRUCTURE . . 3.37 236 80.5 293 CRMSMC SURFACE . . . . . . . . 5.42 212 78.8 269 CRMSMC BURIED . . . . . . . . 3.35 132 76.3 173 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 356 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 316 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 252 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 204 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 152 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 4.73 344 48.0 716 CRMSALL SECONDARY STRUCTURE . . 3.37 236 48.4 488 CRMSALL SURFACE . . . . . . . . 5.42 212 50.0 424 CRMSALL BURIED . . . . . . . . 3.35 132 45.2 292 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.803 1.000 0.500 86 95.6 90 ERRCA SECONDARY STRUCTURE . . 2.649 1.000 0.500 59 100.0 59 ERRCA SURFACE . . . . . . . . 4.583 1.000 0.500 53 96.4 55 ERRCA BURIED . . . . . . . . 2.551 1.000 0.500 33 94.3 35 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.771 1.000 0.500 344 77.8 442 ERRMC SECONDARY STRUCTURE . . 2.680 1.000 0.500 236 80.5 293 ERRMC SURFACE . . . . . . . . 4.466 1.000 0.500 212 78.8 269 ERRMC BURIED . . . . . . . . 2.653 1.000 0.500 132 76.3 173 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 356 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 316 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 252 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 204 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 152 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 3.771 1.000 0.500 344 48.0 716 ERRALL SECONDARY STRUCTURE . . 2.680 1.000 0.500 236 48.4 488 ERRALL SURFACE . . . . . . . . 4.466 1.000 0.500 212 50.0 424 ERRALL BURIED . . . . . . . . 2.653 1.000 0.500 132 45.2 292 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 11 36 47 57 83 86 90 DISTCA CA (P) 12.22 40.00 52.22 63.33 92.22 90 DISTCA CA (RMS) 0.72 1.33 1.67 2.34 4.43 DISTCA ALL (N) 43 142 184 224 337 344 716 DISTALL ALL (P) 6.01 19.83 25.70 31.28 47.07 716 DISTALL ALL (RMS) 0.71 1.33 1.64 2.27 4.50 DISTALL END of the results output