####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 55 ( 220), selected 55 , name T0539TS328_1-D1 # Molecule2: number of CA atoms 68 ( 1014), selected 55 , name T0539-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0539TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 55 26 - 80 2.57 2.57 LCS_AVERAGE: 80.88 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 51 29 - 79 1.94 2.59 LONGEST_CONTINUOUS_SEGMENT: 51 30 - 80 1.96 2.61 LCS_AVERAGE: 71.31 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 31 45 - 75 0.98 3.05 LONGEST_CONTINUOUS_SEGMENT: 31 46 - 76 1.00 3.15 LCS_AVERAGE: 34.25 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 55 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT A 26 A 26 4 5 55 3 3 7 13 17 34 47 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT V 27 V 27 4 5 55 3 3 4 4 5 16 22 39 48 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT G 28 G 28 4 5 55 3 3 4 4 6 10 12 20 26 33 37 48 53 54 55 55 55 55 55 55 LCS_GDT Q 29 Q 29 4 51 55 3 3 4 6 9 16 22 31 47 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT E 30 E 30 4 51 55 3 16 27 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT M 31 M 31 11 51 55 3 3 21 33 41 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 32 C 32 14 51 55 5 12 29 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 33 C 33 14 51 55 6 15 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT P 34 P 34 14 51 55 5 15 29 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT I 35 I 35 14 51 55 6 15 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 36 C 36 14 51 55 4 14 30 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 37 C 37 14 51 55 4 12 29 39 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT S 38 S 38 14 51 55 6 15 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT E 39 E 39 14 51 55 5 15 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT Y 40 Y 40 16 51 55 4 11 29 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT V 41 V 41 16 51 55 3 11 26 41 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT K 42 K 42 21 51 55 3 8 25 36 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT G 43 G 43 24 51 55 4 15 28 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT E 44 E 44 30 51 55 8 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT V 45 V 45 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT A 46 A 46 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT T 47 T 47 31 51 55 5 18 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT E 48 E 48 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT L 49 L 49 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT P 50 P 50 31 51 55 8 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 51 C 51 31 51 55 7 21 30 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT H 52 H 52 31 51 55 10 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT H 53 H 53 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT Y 54 Y 54 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT F 55 F 55 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT H 56 H 56 31 51 55 9 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT K 57 K 57 31 51 55 7 21 30 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT P 58 P 58 31 51 55 4 19 29 41 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 59 C 59 31 51 55 5 19 30 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT V 60 V 60 31 51 55 9 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT S 61 S 61 31 51 55 9 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT I 62 I 62 31 51 55 8 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT W 63 W 63 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT L 64 L 64 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT Q 65 Q 65 31 51 55 7 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT K 66 K 66 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT S 67 S 67 31 51 55 10 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT G 68 G 68 31 51 55 6 20 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT T 69 T 69 31 51 55 6 19 30 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 70 C 70 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT P 71 P 71 31 51 55 7 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT V 72 V 72 31 51 55 7 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 73 C 73 31 51 55 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT R 74 R 74 31 51 55 4 11 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT C 75 C 75 31 51 55 4 20 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT M 76 M 76 31 51 55 3 14 22 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT F 77 F 77 27 51 55 3 14 26 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT P 78 P 78 6 51 55 3 4 11 25 43 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 LCS_GDT P 79 P 79 3 51 55 3 3 3 4 7 10 34 49 51 51 52 53 54 54 55 55 55 55 55 55 LCS_GDT P 80 P 80 3 51 55 3 3 3 3 5 6 6 7 46 51 52 53 54 54 55 55 55 55 55 55 LCS_AVERAGE LCS_A: 62.15 ( 34.25 71.31 80.88 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 21 31 42 47 49 49 50 51 52 52 53 54 54 55 55 55 55 55 55 GDT PERCENT_AT 17.65 30.88 45.59 61.76 69.12 72.06 72.06 73.53 75.00 76.47 76.47 77.94 79.41 79.41 80.88 80.88 80.88 80.88 80.88 80.88 GDT RMS_LOCAL 0.36 0.65 1.08 1.35 1.50 1.62 1.62 1.76 1.86 2.08 2.01 2.17 2.34 2.34 2.57 2.57 2.57 2.57 2.57 2.57 GDT RMS_ALL_AT 2.95 2.92 2.71 2.62 2.60 2.60 2.60 2.60 2.60 2.58 2.59 2.58 2.58 2.58 2.57 2.57 2.57 2.57 2.57 2.57 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA A 26 A 26 4.935 1 0.296 0.296 6.296 33.810 27.048 LGA V 27 V 27 5.737 3 0.555 0.555 9.167 17.500 10.000 LGA G 28 G 28 8.425 0 0.154 0.154 10.573 6.667 6.667 LGA Q 29 Q 29 6.413 5 0.347 0.347 6.413 37.619 16.720 LGA E 30 E 30 2.048 5 0.572 0.572 4.251 60.119 26.720 LGA M 31 M 31 3.220 4 0.013 0.013 4.319 54.286 27.143 LGA C 32 C 32 1.507 2 0.042 0.042 1.507 86.190 57.460 LGA C 33 C 33 0.577 2 0.074 0.074 1.233 88.214 58.810 LGA P 34 P 34 1.253 3 0.047 0.047 1.580 81.548 46.599 LGA I 35 I 35 0.841 4 0.096 0.096 2.160 81.786 40.893 LGA C 36 C 36 1.859 2 0.059 0.059 2.721 71.071 47.381 LGA C 37 C 37 2.034 2 0.040 0.040 2.137 68.810 45.873 LGA S 38 S 38 1.017 2 0.434 0.434 2.883 75.357 50.238 LGA E 39 E 39 0.783 5 0.022 0.022 1.091 88.214 39.206 LGA Y 40 Y 40 1.163 8 0.224 0.224 2.275 77.381 25.794 LGA V 41 V 41 1.858 3 0.135 0.135 1.891 72.857 41.633 LGA K 42 K 42 2.188 5 0.592 0.592 5.165 55.238 24.550 LGA G 43 G 43 1.193 0 0.012 0.012 1.221 85.952 85.952 LGA E 44 E 44 0.138 5 0.183 0.183 1.187 95.357 42.381 LGA V 45 V 45 0.549 3 0.046 0.046 0.790 90.476 51.701 LGA A 46 A 46 0.925 1 0.079 0.079 0.984 90.476 72.381 LGA T 47 T 47 1.606 3 0.134 0.134 1.679 75.000 42.857 LGA E 48 E 48 1.411 5 0.087 0.087 1.565 79.286 35.238 LGA L 49 L 49 1.349 4 0.066 0.066 1.398 81.429 40.714 LGA P 50 P 50 1.868 3 0.145 0.145 2.184 68.810 39.320 LGA C 51 C 51 2.290 2 0.041 0.041 2.290 64.762 43.175 LGA H 52 H 52 2.174 6 0.175 0.175 2.387 64.762 25.905 LGA H 53 H 53 1.596 6 0.015 0.015 1.730 77.143 30.857 LGA Y 54 Y 54 1.265 8 0.064 0.064 1.353 81.429 27.143 LGA F 55 F 55 1.239 7 0.120 0.120 1.721 79.286 28.831 LGA H 56 H 56 1.694 6 0.029 0.029 1.694 77.143 30.857 LGA K 57 K 57 1.984 5 0.212 0.212 2.128 70.833 31.481 LGA P 58 P 58 2.312 3 0.192 0.192 2.934 62.857 35.918 LGA C 59 C 59 1.609 2 0.009 0.009 1.648 77.143 51.429 LGA V 60 V 60 0.798 3 0.067 0.067 1.075 88.214 50.408 LGA S 61 S 61 1.077 2 0.125 0.125 1.077 88.214 58.810 LGA I 62 I 62 0.688 4 0.163 0.163 1.036 88.214 44.107 LGA W 63 W 63 0.470 10 0.078 0.078 0.938 95.238 27.211 LGA L 64 L 64 0.464 4 0.035 0.035 0.802 95.238 47.619 LGA Q 65 Q 65 1.141 5 0.003 0.003 1.354 83.690 37.196 LGA K 66 K 66 1.356 5 0.010 0.010 1.993 77.143 34.286 LGA S 67 S 67 1.728 2 0.051 0.051 2.235 72.976 48.651 LGA G 68 G 68 1.825 0 0.083 0.083 1.852 72.857 72.857 LGA T 69 T 69 1.763 3 0.134 0.134 1.763 75.000 42.857 LGA C 70 C 70 0.694 2 0.056 0.056 1.850 83.810 55.873 LGA P 71 P 71 1.847 3 0.192 0.192 2.732 69.048 39.456 LGA V 72 V 72 2.082 3 0.166 0.166 2.877 64.881 37.075 LGA C 73 C 73 1.437 2 0.012 0.012 1.437 81.429 54.286 LGA R 74 R 74 1.684 7 0.124 0.124 1.684 79.286 28.831 LGA C 75 C 75 1.399 2 0.172 0.172 2.187 75.119 50.079 LGA M 76 M 76 2.022 4 0.164 0.164 2.187 68.929 34.464 LGA F 77 F 77 2.299 7 0.437 0.437 4.323 54.167 19.697 LGA P 78 P 78 2.965 3 0.036 0.036 3.608 50.119 28.639 LGA P 79 P 79 4.876 3 0.609 0.609 4.970 32.857 18.776 LGA P 80 P 80 6.948 3 0.011 0.011 6.948 14.286 8.163 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 55 220 220 100.00 419 220 52.51 68 SUMMARY(RMSD_GDC): 2.567 2.634 2.634 57.199 31.591 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 55 68 4.0 50 1.76 61.765 67.524 2.695 LGA_LOCAL RMSD: 1.755 Number of atoms: 50 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.597 Number of assigned atoms: 55 Std_ASGN_ATOMS RMSD: 2.567 Standard rmsd on all 55 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.442071 * X + 0.404586 * Y + -0.800552 * Z + 1.289840 Y_new = -0.823328 * X + 0.171151 * Y + 0.541146 * Z + 0.196717 Z_new = 0.355956 * X + 0.898341 * Y + 0.257446 * Z + -1.572181 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.063552 -0.363937 1.291697 [DEG: -118.2328 -20.8520 74.0088 ] ZXZ: -2.165210 1.310418 0.377258 [DEG: -124.0574 75.0814 21.6153 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0539TS328_1-D1 REMARK 2: T0539-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0539TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 55 68 4.0 50 1.76 67.524 2.57 REMARK ---------------------------------------------------------- MOLECULE T0539TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0539 REMARK MODEL 1 REMARK PARENT 2ect_A ATOM 1 N ALA 26 -6.468 -8.615 -9.672 1.00 3.00 N ATOM 2 CA ALA 26 -5.643 -7.493 -10.107 1.00 3.00 C ATOM 3 C ALA 26 -5.370 -7.569 -11.606 1.00 3.00 C ATOM 4 O ALA 26 -4.293 -7.988 -12.030 1.00 3.00 O ATOM 5 N VAL 27 -6.352 -7.161 -12.403 1.00 3.00 N ATOM 6 CA VAL 27 -6.217 -7.183 -13.855 1.00 3.00 C ATOM 7 C VAL 27 -6.189 -5.769 -14.425 1.00 3.00 C ATOM 8 O VAL 27 -5.565 -5.517 -15.455 1.00 3.00 O ATOM 9 N GLY 28 -6.869 -4.850 -13.747 1.00 3.00 N ATOM 10 CA GLY 28 -6.909 -3.471 -14.201 1.00 3.00 C ATOM 11 C GLY 28 -8.314 -2.905 -14.208 1.00 3.00 C ATOM 12 O GLY 28 -8.712 -2.224 -15.155 1.00 3.00 O ATOM 13 N GLN 29 -9.069 -3.184 -13.152 1.00 3.00 N ATOM 14 CA GLN 29 -10.441 -2.701 -13.041 1.00 3.00 C ATOM 15 C GLN 29 -10.580 -1.720 -11.882 1.00 3.00 C ATOM 16 O GLN 29 -10.519 -2.108 -10.715 1.00 3.00 O ATOM 17 N GLU 30 -10.768 -0.445 -12.211 1.00 3.00 N ATOM 18 CA GLU 30 -10.913 0.572 -11.187 1.00 3.00 C ATOM 19 C GLU 30 -10.070 0.284 -9.961 1.00 3.00 C ATOM 20 O GLU 30 -10.524 0.467 -8.830 1.00 3.00 O ATOM 21 N MET 31 -8.841 -0.167 -10.182 1.00 3.00 N ATOM 22 CA MET 31 -7.932 -0.482 -9.086 1.00 3.00 C ATOM 23 C MET 31 -6.850 0.584 -8.953 1.00 3.00 C ATOM 24 O MET 31 -6.015 0.525 -8.050 1.00 3.00 O ATOM 25 N CYS 32 -6.872 1.560 -9.856 1.00 3.00 N ATOM 26 CA CYS 32 -5.892 2.640 -9.837 1.00 3.00 C ATOM 27 C CYS 32 -5.576 3.062 -8.405 1.00 3.00 C ATOM 28 O CYS 32 -6.463 3.130 -7.555 1.00 3.00 O ATOM 29 N CYS 33 -4.304 3.345 -8.146 1.00 3.00 N ATOM 30 CA CYS 33 -3.867 3.760 -6.818 1.00 3.00 C ATOM 31 C CYS 33 -4.650 4.981 -6.345 1.00 3.00 C ATOM 32 O CYS 33 -4.733 6.000 -7.030 1.00 3.00 O ATOM 33 N PRO 34 -5.238 4.877 -5.143 1.00 3.00 N ATOM 34 CA PRO 34 -6.024 5.964 -4.551 1.00 3.00 C ATOM 35 C PRO 34 -5.157 7.146 -4.133 1.00 3.00 C ATOM 36 O PRO 34 -5.598 8.295 -4.165 1.00 3.00 O ATOM 37 N ILE 35 -3.918 6.857 -3.743 1.00 3.00 N ATOM 38 CA ILE 35 -2.988 7.897 -3.320 1.00 3.00 C ATOM 39 C ILE 35 -2.879 8.996 -4.371 1.00 3.00 C ATOM 40 O ILE 35 -2.989 10.182 -4.060 1.00 3.00 O ATOM 41 N CYS 36 -2.660 8.594 -5.619 1.00 3.00 N ATOM 42 CA CYS 36 -2.535 9.543 -6.718 1.00 3.00 C ATOM 43 C CYS 36 -3.751 9.474 -7.637 1.00 3.00 C ATOM 44 O CYS 36 -4.013 10.398 -8.408 1.00 3.00 O ATOM 45 N CYS 37 -4.491 8.374 -7.550 1.00 3.00 N ATOM 46 CA CYS 37 -5.680 8.184 -8.372 1.00 3.00 C ATOM 47 C CYS 37 -5.317 8.144 -9.853 1.00 3.00 C ATOM 48 O CYS 37 -6.029 8.700 -10.689 1.00 3.00 O ATOM 49 N SER 38 -4.209 7.482 -10.168 1.00 3.00 N ATOM 50 CA SER 38 -3.754 7.369 -11.549 1.00 3.00 C ATOM 51 C SER 38 -4.062 5.984 -12.113 1.00 3.00 C ATOM 52 O SER 38 -5.086 5.783 -12.767 1.00 3.00 O ATOM 53 N GLU 39 -3.169 5.036 -11.855 1.00 3.00 N ATOM 54 CA GLU 39 -3.345 3.670 -12.335 1.00 3.00 C ATOM 55 C GLU 39 -2.143 2.806 -11.965 1.00 3.00 C ATOM 56 O GLU 39 -1.134 3.306 -11.470 1.00 3.00 O ATOM 57 N TYR 40 -2.259 1.505 -12.210 1.00 3.00 N ATOM 58 CA TYR 40 -1.184 0.570 -11.900 1.00 3.00 C ATOM 59 C TYR 40 -0.414 0.188 -13.161 1.00 3.00 C ATOM 60 O TYR 40 -0.658 0.729 -14.239 1.00 3.00 O ATOM 61 N VAL 41 0.517 -0.749 -13.016 1.00 3.00 N ATOM 62 CA VAL 41 1.322 -1.206 -14.142 1.00 3.00 C ATOM 63 C VAL 41 2.042 -2.508 -13.809 1.00 3.00 C ATOM 64 O VAL 41 2.673 -2.630 -12.758 1.00 3.00 O ATOM 65 N LYS 42 1.942 -3.480 -14.709 1.00 3.00 N ATOM 66 CA LYS 42 2.583 -4.775 -14.511 1.00 3.00 C ATOM 67 C LYS 42 3.947 -4.611 -13.849 1.00 3.00 C ATOM 68 O LYS 42 4.276 -5.321 -12.897 1.00 3.00 O ATOM 69 N GLY 43 4.737 -3.669 -14.355 1.00 3.00 N ATOM 70 CA GLY 43 6.056 -3.429 -13.799 1.00 3.00 C ATOM 71 C GLY 43 6.008 -2.585 -12.540 1.00 3.00 C ATOM 72 O GLY 43 6.904 -2.662 -11.700 1.00 3.00 O ATOM 73 N GLU 44 4.960 -1.779 -12.408 1.00 3.00 N ATOM 74 CA GLU 44 4.801 -0.917 -11.243 1.00 3.00 C ATOM 75 C GLU 44 4.596 -1.744 -9.977 1.00 3.00 C ATOM 76 O GLU 44 3.617 -2.481 -9.857 1.00 3.00 O ATOM 77 N VAL 45 5.527 -1.618 -9.038 1.00 3.00 N ATOM 78 CA VAL 45 5.453 -2.356 -7.783 1.00 3.00 C ATOM 79 C VAL 45 4.255 -1.900 -6.955 1.00 3.00 C ATOM 80 O VAL 45 4.260 -0.813 -6.380 1.00 3.00 O ATOM 81 N ALA 46 3.227 -2.742 -6.900 1.00 3.00 N ATOM 82 CA ALA 46 2.022 -2.428 -6.143 1.00 3.00 C ATOM 83 C ALA 46 2.004 -3.165 -4.808 1.00 3.00 C ATOM 84 O ALA 46 2.548 -4.263 -4.685 1.00 3.00 O ATOM 85 N THR 47 1.376 -2.553 -3.809 1.00 3.00 N ATOM 86 CA THR 47 1.289 -3.150 -2.481 1.00 3.00 C ATOM 87 C THR 47 -0.166 -3.292 -2.044 1.00 3.00 C ATOM 88 O THR 47 -0.962 -2.366 -2.194 1.00 3.00 O ATOM 89 N GLU 48 -0.506 -4.459 -1.505 1.00 3.00 N ATOM 90 CA GLU 48 -1.865 -4.722 -1.049 1.00 3.00 C ATOM 91 C GLU 48 -1.964 -4.592 0.468 1.00 3.00 C ATOM 92 O GLU 48 -1.062 -5.006 1.197 1.00 3.00 O ATOM 93 N LEU 49 -3.065 -4.015 0.937 1.00 3.00 N ATOM 94 CA LEU 49 -3.282 -3.829 2.367 1.00 3.00 C ATOM 95 C LEU 49 -4.187 -4.922 2.926 1.00 3.00 C ATOM 96 O LEU 49 -4.920 -5.590 2.196 1.00 3.00 O ATOM 97 N PRO 50 -4.140 -5.110 4.254 1.00 3.00 N ATOM 98 CA PRO 50 -4.951 -6.119 4.941 1.00 3.00 C ATOM 99 C PRO 50 -6.434 -5.764 4.946 1.00 3.00 C ATOM 100 O PRO 50 -7.241 -6.435 5.590 1.00 3.00 O ATOM 101 N CYS 51 -6.787 -4.705 4.225 1.00 3.00 N ATOM 102 CA CYS 51 -8.174 -4.261 4.146 1.00 3.00 C ATOM 103 C CYS 51 -8.716 -4.423 2.729 1.00 3.00 C ATOM 104 O CYS 51 -9.785 -3.909 2.401 1.00 3.00 O ATOM 105 N HIS 52 -7.973 -5.141 1.894 1.00 3.00 N ATOM 106 CA HIS 52 -8.379 -5.369 0.512 1.00 3.00 C ATOM 107 C HIS 52 -8.184 -4.111 -0.328 1.00 3.00 C ATOM 108 O HIS 52 -8.930 -3.862 -1.276 1.00 3.00 O ATOM 109 N HIS 53 -7.175 -3.321 0.025 1.00 3.00 N ATOM 110 CA HIS 53 -6.879 -2.089 -0.697 1.00 3.00 C ATOM 111 C HIS 53 -5.428 -2.068 -1.166 1.00 3.00 C ATOM 112 O HIS 53 -4.505 -2.250 -0.371 1.00 3.00 O ATOM 113 N TYR 54 -5.233 -1.846 -2.462 1.00 3.00 N ATOM 114 CA TYR 54 -3.893 -1.803 -3.037 1.00 3.00 C ATOM 115 C TYR 54 -3.405 -0.363 -3.171 1.00 3.00 C ATOM 116 O TYR 54 -4.204 0.573 -3.214 1.00 3.00 O ATOM 117 N PHE 55 -2.089 -0.195 -3.241 1.00 3.00 N ATOM 118 CA PHE 55 -1.494 1.130 -3.373 1.00 3.00 C ATOM 119 C PHE 55 -0.082 1.038 -3.943 1.00 3.00 C ATOM 120 O PHE 55 0.644 0.078 -3.684 1.00 3.00 O ATOM 121 N HIS 56 0.301 2.044 -4.724 1.00 3.00 N ATOM 122 CA HIS 56 1.627 2.078 -5.332 1.00 3.00 C ATOM 123 C HIS 56 2.714 1.919 -4.274 1.00 3.00 C ATOM 124 O HIS 56 2.676 2.565 -3.228 1.00 3.00 O ATOM 125 N LYS 57 3.682 1.052 -4.554 1.00 3.00 N ATOM 126 CA LYS 57 4.781 0.807 -3.626 1.00 3.00 C ATOM 127 C LYS 57 5.555 2.093 -3.350 1.00 3.00 C ATOM 128 O LYS 57 6.403 2.139 -2.459 1.00 3.00 O ATOM 129 N PRO 58 5.257 3.134 -4.120 1.00 3.00 N ATOM 130 CA PRO 58 5.928 4.419 -3.961 1.00 3.00 C ATOM 131 C PRO 58 4.988 5.450 -3.343 1.00 3.00 C ATOM 132 O PRO 58 5.410 6.544 -2.965 1.00 3.00 O ATOM 133 N CYS 59 3.712 5.094 -3.242 1.00 3.00 N ATOM 134 CA CYS 59 2.711 5.985 -2.670 1.00 3.00 C ATOM 135 C CYS 59 2.345 5.555 -1.253 1.00 3.00 C ATOM 136 O CYS 59 2.083 6.391 -0.387 1.00 3.00 O ATOM 137 N VAL 60 2.329 4.246 -1.024 1.00 3.00 N ATOM 138 CA VAL 60 1.997 3.704 0.289 1.00 3.00 C ATOM 139 C VAL 60 3.227 3.652 1.189 1.00 3.00 C ATOM 140 O VAL 60 3.172 4.038 2.356 1.00 3.00 O ATOM 141 N SER 61 4.336 3.171 0.637 1.00 3.00 N ATOM 142 CA SER 61 5.581 3.069 1.389 1.00 3.00 C ATOM 143 C SER 61 5.822 4.321 2.225 1.00 3.00 C ATOM 144 O SER 61 5.961 4.264 3.447 1.00 3.00 O ATOM 145 N ILE 62 5.874 5.480 1.554 1.00 3.00 N ATOM 146 CA ILE 62 6.096 6.769 2.215 1.00 3.00 C ATOM 147 C ILE 62 4.904 7.200 3.062 1.00 3.00 C ATOM 148 O ILE 62 5.004 8.127 3.865 1.00 3.00 O ATOM 149 N TRP 63 3.777 6.522 2.877 1.00 3.00 N ATOM 150 CA TRP 63 2.566 6.835 3.626 1.00 3.00 C ATOM 151 C TRP 63 2.550 6.108 4.966 1.00 3.00 C ATOM 152 O TRP 63 2.489 6.736 6.023 1.00 3.00 O ATOM 153 N LEU 64 2.606 4.782 4.915 1.00 3.00 N ATOM 154 CA LEU 64 2.599 3.969 6.126 1.00 3.00 C ATOM 155 C LEU 64 3.729 4.381 7.065 1.00 3.00 C ATOM 156 O LEU 64 3.600 4.286 8.285 1.00 3.00 O ATOM 157 N GLN 65 4.834 4.841 6.486 1.00 3.00 N ATOM 158 CA GLN 65 5.985 5.269 7.273 1.00 3.00 C ATOM 159 C GLN 65 5.704 6.595 7.973 1.00 3.00 C ATOM 160 O GLN 65 6.555 7.124 8.687 1.00 3.00 O ATOM 161 N LYS 66 4.503 7.125 7.763 1.00 3.00 N ATOM 162 CA LYS 66 4.110 8.389 8.373 1.00 3.00 C ATOM 163 C LYS 66 2.811 8.235 9.156 1.00 3.00 C ATOM 164 O LYS 66 2.654 8.805 10.237 1.00 3.00 O ATOM 165 N SER 67 1.881 7.461 8.606 1.00 3.00 N ATOM 166 CA SER 67 0.595 7.231 9.254 1.00 3.00 C ATOM 167 C SER 67 0.460 5.776 9.693 1.00 3.00 C ATOM 168 O SER 67 -0.231 5.472 10.665 1.00 3.00 O ATOM 169 N GLY 68 1.124 4.881 8.970 1.00 3.00 N ATOM 170 CA GLY 68 1.078 3.458 9.284 1.00 3.00 C ATOM 171 C GLY 68 -0.352 2.931 9.215 1.00 3.00 C ATOM 172 O GLY 68 -0.770 2.130 10.051 1.00 3.00 O ATOM 173 N THR 69 -1.096 3.387 8.213 1.00 3.00 N ATOM 174 CA THR 69 -2.482 2.967 8.036 1.00 3.00 C ATOM 175 C THR 69 -2.918 3.128 6.584 1.00 3.00 C ATOM 176 O THR 69 -2.131 3.536 5.729 1.00 3.00 O ATOM 177 N CYS 70 -4.178 2.806 6.312 1.00 3.00 N ATOM 178 CA CYS 70 -4.722 2.914 4.964 1.00 3.00 C ATOM 179 C CYS 70 -5.200 4.336 4.683 1.00 3.00 C ATOM 180 O CYS 70 -6.032 4.891 5.401 1.00 3.00 O ATOM 181 N PRO 71 -4.664 4.940 3.612 1.00 3.00 N ATOM 182 CA PRO 71 -5.022 6.303 3.211 1.00 3.00 C ATOM 183 C PRO 71 -6.446 6.395 2.671 1.00 3.00 C ATOM 184 O PRO 71 -6.882 7.453 2.217 1.00 3.00 O ATOM 185 N VAL 72 -7.166 5.279 2.724 1.00 3.00 N ATOM 186 CA VAL 72 -8.541 5.233 2.242 1.00 3.00 C ATOM 187 C VAL 72 -9.516 4.973 3.385 1.00 3.00 C ATOM 188 O VAL 72 -10.391 5.792 3.667 1.00 3.00 O ATOM 189 N CYS 73 -9.358 3.829 4.041 1.00 3.00 N ATOM 190 CA CYS 73 -10.224 3.460 5.155 1.00 3.00 C ATOM 191 C CYS 73 -9.478 3.564 6.482 1.00 3.00 C ATOM 192 O CYS 73 -10.083 3.507 7.552 1.00 3.00 O ATOM 193 N ARG 74 -8.159 3.716 6.402 1.00 3.00 N ATOM 194 CA ARG 74 -7.331 3.827 7.596 1.00 3.00 C ATOM 195 C ARG 74 -7.553 2.638 8.525 1.00 3.00 C ATOM 196 O ARG 74 -7.731 2.803 9.733 1.00 3.00 O ATOM 197 N CYS 75 -7.544 1.437 7.955 1.00 3.00 N ATOM 198 CA CYS 75 -7.743 0.219 8.730 1.00 3.00 C ATOM 199 C CYS 75 -6.501 -0.115 9.549 1.00 3.00 C ATOM 200 O CYS 75 -5.472 -0.510 8.999 1.00 3.00 O ATOM 201 N MET 76 -6.602 0.043 10.864 1.00 3.00 N ATOM 202 CA MET 76 -5.486 -0.239 11.758 1.00 3.00 C ATOM 203 C MET 76 -4.689 -1.444 11.267 1.00 3.00 C ATOM 204 O MET 76 -5.180 -2.573 11.276 1.00 3.00 O ATOM 205 N PHE 77 -3.457 -1.194 10.837 1.00 3.00 N ATOM 206 CA PHE 77 -2.589 -2.258 10.342 1.00 3.00 C ATOM 207 C PHE 77 -1.757 -2.853 11.472 1.00 3.00 C ATOM 208 O PHE 77 -0.586 -3.187 11.287 1.00 3.00 O ATOM 209 N PRO 78 -2.370 -2.986 12.644 1.00 3.00 N ATOM 210 CA PRO 78 -1.686 -3.543 13.805 1.00 3.00 C ATOM 211 C PRO 78 -2.683 -4.067 14.832 1.00 3.00 C ATOM 212 O PRO 78 -3.755 -3.494 15.019 1.00 3.00 O ATOM 213 N PRO 79 -2.322 -5.162 15.495 1.00 3.00 N ATOM 214 CA PRO 79 -3.197 -5.745 16.496 1.00 3.00 C ATOM 215 C PRO 79 -2.495 -5.969 17.821 1.00 3.00 C ATOM 216 O PRO 79 -3.068 -5.727 18.882 1.00 3.00 O ATOM 217 N PRO 80 -1.252 -6.434 17.758 1.00 3.00 N ATOM 218 CA PRO 80 -0.472 -6.693 18.963 1.00 3.00 C ATOM 219 C PRO 80 -0.153 -5.393 19.694 1.00 3.00 C ATOM 220 O PRO 80 -0.471 -4.306 19.215 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 220 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 48.10 68.5 108 80.6 134 ARMSMC SECONDARY STRUCTURE . . 23.47 85.3 34 85.0 40 ARMSMC SURFACE . . . . . . . . 53.91 60.5 76 76.0 100 ARMSMC BURIED . . . . . . . . 30.11 87.5 32 94.1 34 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 55 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 30 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.57 (Number of atoms: 55) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.57 55 80.9 68 CRMSCA CRN = ALL/NP . . . . . 0.0467 CRMSCA SECONDARY STRUCTURE . . 1.31 17 85.0 20 CRMSCA SURFACE . . . . . . . . 2.82 39 76.5 51 CRMSCA BURIED . . . . . . . . 1.80 16 94.1 17 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.64 220 65.5 336 CRMSMC SECONDARY STRUCTURE . . 1.33 68 68.0 100 CRMSMC SURFACE . . . . . . . . 2.84 156 61.9 252 CRMSMC BURIED . . . . . . . . 2.05 64 76.2 84 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 742 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 700 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 257 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 561 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 181 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.64 220 21.7 1014 CRMSALL SECONDARY STRUCTURE . . 1.33 68 20.2 337 CRMSALL SURFACE . . . . . . . . 2.84 156 20.4 765 CRMSALL BURIED . . . . . . . . 2.05 64 25.7 249 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.683 0.359 0.388 55 80.9 68 ERRCA SECONDARY STRUCTURE . . 1.791 0.447 0.520 17 85.0 20 ERRCA SURFACE . . . . . . . . 1.597 0.320 0.331 39 76.5 51 ERRCA BURIED . . . . . . . . 1.892 0.454 0.527 16 94.1 17 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.652 0.348 0.383 220 65.5 336 ERRMC SECONDARY STRUCTURE . . 1.771 0.440 0.519 68 68.0 100 ERRMC SURFACE . . . . . . . . 1.562 0.315 0.331 156 61.9 252 ERRMC BURIED . . . . . . . . 1.871 0.428 0.509 64 76.2 84 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 742 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 700 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 257 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 561 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 181 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.652 0.348 0.383 220 21.7 1014 ERRALL SECONDARY STRUCTURE . . 1.771 0.440 0.519 68 20.2 337 ERRALL SURFACE . . . . . . . . 1.562 0.315 0.331 156 20.4 765 ERRALL BURIED . . . . . . . . 1.871 0.428 0.509 64 25.7 249 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 12 38 47 49 55 55 68 DISTCA CA (P) 17.65 55.88 69.12 72.06 80.88 68 DISTCA CA (RMS) 0.72 1.32 1.55 1.66 2.57 DISTCA ALL (N) 44 149 184 201 219 220 1014 DISTALL ALL (P) 4.34 14.69 18.15 19.82 21.60 1014 DISTALL ALL (RMS) 0.75 1.31 1.56 1.83 2.55 DISTALL END of the results output