####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 32 ( 128), selected 32 , name T0539AL285_1-D1 # Molecule2: number of CA atoms 68 ( 1014), selected 32 , name T0539-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0539AL285_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 43 - 74 1.42 1.42 LCS_AVERAGE: 47.06 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 32 43 - 74 1.42 1.42 LCS_AVERAGE: 47.06 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 30 45 - 74 0.91 1.57 LCS_AVERAGE: 42.56 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 32 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT G 43 G 43 3 32 32 0 3 5 5 17 30 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT E 44 E 44 23 32 32 3 11 20 29 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT V 45 V 45 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT A 46 A 46 30 32 32 4 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT T 47 T 47 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT E 48 E 48 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT L 49 L 49 30 32 32 10 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT P 50 P 50 30 32 32 10 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT C 51 C 51 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT H 52 H 52 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT H 53 H 53 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT Y 54 Y 54 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT F 55 F 55 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT H 56 H 56 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT K 57 K 57 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT P 58 P 58 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT C 59 C 59 30 32 32 6 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT V 60 V 60 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT S 61 S 61 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT I 62 I 62 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT W 63 W 63 30 32 32 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT L 64 L 64 30 32 32 6 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT Q 65 Q 65 30 32 32 6 22 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT K 66 K 66 30 32 32 4 20 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT S 67 S 67 30 32 32 10 17 27 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT G 68 G 68 30 32 32 4 20 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT T 69 T 69 30 32 32 6 17 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT C 70 C 70 30 32 32 10 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT P 71 P 71 30 32 32 6 20 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT V 72 V 72 30 32 32 10 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT C 73 C 73 30 32 32 11 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_GDT R 74 R 74 30 32 32 8 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 LCS_AVERAGE LCS_A: 45.56 ( 42.56 47.06 47.06 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 12 24 29 30 31 31 32 32 32 32 32 32 32 32 32 32 32 32 32 32 GDT PERCENT_AT 17.65 35.29 42.65 44.12 45.59 45.59 47.06 47.06 47.06 47.06 47.06 47.06 47.06 47.06 47.06 47.06 47.06 47.06 47.06 47.06 GDT RMS_LOCAL 0.30 0.69 0.86 0.91 1.05 1.05 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 GDT RMS_ALL_AT 1.77 1.59 1.57 1.57 1.49 1.49 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 1.42 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA G 43 G 43 5.096 0 0.600 0.600 7.771 31.667 31.667 LGA E 44 E 44 2.138 5 0.288 0.288 3.493 71.667 31.852 LGA V 45 V 45 1.115 3 0.263 0.263 1.122 83.690 47.823 LGA A 46 A 46 0.986 1 0.093 0.093 1.010 88.214 70.571 LGA T 47 T 47 0.210 3 0.075 0.075 0.370 100.000 57.143 LGA E 48 E 48 0.196 5 0.152 0.152 0.635 97.619 43.386 LGA L 49 L 49 0.812 4 0.048 0.048 0.882 90.476 45.238 LGA P 50 P 50 0.974 3 0.043 0.043 1.068 88.214 50.408 LGA C 51 C 51 0.832 2 0.059 0.059 0.832 90.476 60.317 LGA H 52 H 52 0.558 6 0.270 0.270 1.566 86.071 34.429 LGA H 53 H 53 0.552 6 0.099 0.099 0.847 90.476 36.190 LGA Y 54 Y 54 0.319 8 0.051 0.051 0.981 95.238 31.746 LGA F 55 F 55 0.760 7 0.012 0.012 0.760 90.476 32.900 LGA H 56 H 56 0.971 6 0.071 0.071 1.021 88.214 35.286 LGA K 57 K 57 0.880 5 0.086 0.086 0.937 90.476 40.212 LGA P 58 P 58 1.290 3 0.090 0.090 1.665 79.286 45.306 LGA C 59 C 59 1.559 2 0.030 0.030 1.559 79.286 52.857 LGA V 60 V 60 0.854 3 0.056 0.056 1.112 88.214 50.408 LGA S 61 S 61 1.041 2 0.056 0.056 1.340 83.690 55.794 LGA I 62 I 62 1.561 4 0.022 0.022 1.656 77.143 38.571 LGA W 63 W 63 0.839 10 0.021 0.021 1.040 85.952 24.558 LGA L 64 L 64 1.068 4 0.034 0.034 1.432 83.690 41.845 LGA Q 65 Q 65 1.840 5 0.108 0.108 1.840 77.143 34.286 LGA K 66 K 66 0.992 5 0.067 0.067 1.209 85.952 38.201 LGA S 67 S 67 1.830 2 0.657 0.657 3.108 71.548 47.698 LGA G 68 G 68 1.522 0 0.130 0.130 1.874 72.857 72.857 LGA T 69 T 69 1.467 3 0.078 0.078 1.467 81.429 46.531 LGA C 70 C 70 0.619 2 0.082 0.082 1.208 88.214 58.810 LGA P 71 P 71 1.052 3 0.029 0.029 1.234 85.952 49.116 LGA V 72 V 72 0.836 3 0.135 0.135 1.799 83.810 47.891 LGA C 73 C 73 0.823 2 0.712 0.712 3.309 80.476 53.651 LGA R 74 R 74 1.253 7 0.057 0.057 1.426 81.429 29.610 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 32 128 128 100.00 249 128 51.41 68 SUMMARY(RMSD_GDC): 1.425 1.499 1.499 39.251 21.135 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 32 68 4.0 32 1.42 43.382 45.408 2.098 LGA_LOCAL RMSD: 1.425 Number of atoms: 32 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 1.425 Number of assigned atoms: 32 Std_ASGN_ATOMS RMSD: 1.425 Standard rmsd on all 32 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.346365 * X + -0.623952 * Y + 0.700510 * Z + -24.832012 Y_new = -0.601371 * X + 0.720799 * Y + 0.344676 * Z + -23.034817 Z_new = -0.719989 * X + -0.301883 * Y + -0.624887 * Z + 6.146153 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.093351 0.803786 -2.691556 [DEG: -119.9402 46.0535 -154.2148 ] ZXZ: 2.028053 2.245783 -1.967819 [DEG: 116.1989 128.6739 -112.7477 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0539AL285_1-D1 REMARK 2: T0539-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0539AL285_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 32 68 4.0 32 1.42 45.408 1.42 REMARK ---------------------------------------------------------- MOLECULE T0539AL285_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 3dplR ATOM 1 N GLY 43 10.478 -1.421 -9.615 1.00 0.00 N ATOM 2 CA GLY 43 9.363 -1.655 -10.518 1.00 0.00 C ATOM 3 C GLY 43 8.026 -1.482 -9.800 1.00 0.00 C ATOM 4 O GLY 43 7.666 -2.323 -8.975 1.00 0.00 O ATOM 5 N GLU 44 7.294 -0.408 -10.112 1.00 0.00 N ATOM 6 CA GLU 44 5.990 -0.146 -9.485 1.00 0.00 C ATOM 7 C GLU 44 5.130 -1.424 -9.497 1.00 0.00 C ATOM 8 O GLU 44 4.448 -1.705 -10.484 1.00 0.00 O ATOM 9 N VAL 45 5.178 -2.199 -8.412 1.00 0.00 N ATOM 10 CA VAL 45 4.379 -3.421 -8.292 1.00 0.00 C ATOM 11 C VAL 45 3.289 -3.230 -7.235 1.00 0.00 C ATOM 12 O VAL 45 3.142 -2.141 -6.687 1.00 0.00 O ATOM 13 N ALA 46 2.537 -4.288 -6.941 1.00 0.00 N ATOM 14 CA ALA 46 1.449 -4.201 -5.967 1.00 0.00 C ATOM 15 C ALA 46 1.720 -4.792 -4.587 1.00 0.00 C ATOM 16 O ALA 46 2.548 -5.679 -4.412 1.00 0.00 O ATOM 17 N THR 47 0.990 -4.286 -3.607 1.00 0.00 N ATOM 18 CA THR 47 1.106 -4.757 -2.245 1.00 0.00 C ATOM 19 C THR 47 -0.307 -4.778 -1.661 1.00 0.00 C ATOM 20 O THR 47 -1.150 -3.952 -1.996 1.00 0.00 O ATOM 21 N GLU 48 -0.570 -5.735 -0.789 1.00 0.00 N ATOM 22 CA GLU 48 -1.886 -5.847 -0.192 1.00 0.00 C ATOM 23 C GLU 48 -1.840 -5.601 1.310 1.00 0.00 C ATOM 24 O GLU 48 -0.791 -5.746 1.936 1.00 0.00 O ATOM 25 N LEU 49 -2.985 -5.233 1.879 1.00 0.00 N ATOM 26 CA LEU 49 -3.059 -5.011 3.307 1.00 0.00 C ATOM 27 C LEU 49 -3.954 -6.084 3.880 1.00 0.00 C ATOM 28 O LEU 49 -4.832 -6.585 3.194 1.00 0.00 O ATOM 29 N PRO 50 -3.738 -6.458 5.132 1.00 0.00 N ATOM 30 CA PRO 50 -4.575 -7.475 5.745 1.00 0.00 C ATOM 31 C PRO 50 -6.043 -7.083 5.570 1.00 0.00 C ATOM 32 O PRO 50 -6.926 -7.930 5.673 1.00 0.00 O ATOM 33 N CYS 51 -6.291 -5.803 5.294 1.00 0.00 N ATOM 34 CA CYS 51 -7.648 -5.281 5.119 1.00 0.00 C ATOM 35 C CYS 51 -8.165 -5.504 3.701 1.00 0.00 C ATOM 36 O CYS 51 -9.220 -4.986 3.326 1.00 0.00 O ATOM 37 N HIS 52 -7.398 -6.264 2.921 1.00 0.00 N ATOM 38 CA HIS 52 -7.723 -6.616 1.536 1.00 0.00 C ATOM 39 C HIS 52 -7.718 -5.474 0.537 1.00 0.00 C ATOM 40 O HIS 52 -8.229 -5.608 -0.570 1.00 0.00 O ATOM 41 N HIS 53 -7.149 -4.345 0.936 1.00 0.00 N ATOM 42 CA HIS 53 -7.039 -3.199 0.043 1.00 0.00 C ATOM 43 C HIS 53 -5.677 -3.311 -0.646 1.00 0.00 C ATOM 44 O HIS 53 -4.693 -3.744 -0.027 1.00 0.00 O ATOM 45 N TYR 54 -5.623 -2.909 -1.914 1.00 0.00 N ATOM 46 CA TYR 54 -4.401 -3.000 -2.698 1.00 0.00 C ATOM 47 C TYR 54 -3.966 -1.698 -3.373 1.00 0.00 C ATOM 48 O TYR 54 -4.785 -0.998 -3.975 1.00 0.00 O ATOM 49 N PHE 55 -2.670 -1.384 -3.285 1.00 0.00 N ATOM 50 CA PHE 55 -2.119 -0.182 -3.912 1.00 0.00 C ATOM 51 C PHE 55 -0.758 -0.525 -4.472 1.00 0.00 C ATOM 52 O PHE 55 -0.284 -1.653 -4.326 1.00 0.00 O ATOM 53 N HIS 56 -0.127 0.455 -5.111 1.00 0.00 N ATOM 54 CA HIS 56 1.212 0.251 -5.624 1.00 0.00 C ATOM 55 C HIS 56 2.043 0.262 -4.356 1.00 0.00 C ATOM 56 O HIS 56 1.798 1.083 -3.474 1.00 0.00 O ATOM 57 N LYS 57 3.006 -0.645 -4.255 1.00 0.00 N ATOM 58 CA LYS 57 3.856 -0.703 -3.082 1.00 0.00 C ATOM 59 C LYS 57 4.562 0.629 -2.849 1.00 0.00 C ATOM 60 O LYS 57 4.784 1.044 -1.714 1.00 0.00 O ATOM 61 N PRO 58 4.913 1.305 -3.933 1.00 0.00 N ATOM 62 CA PRO 58 5.597 2.576 -3.811 1.00 0.00 C ATOM 63 C PRO 58 4.710 3.690 -3.269 1.00 0.00 C ATOM 64 O PRO 58 5.209 4.595 -2.607 1.00 0.00 O ATOM 65 N CYS 59 3.405 3.632 -3.536 1.00 0.00 N ATOM 66 CA CYS 59 2.513 4.690 -3.071 1.00 0.00 C ATOM 67 C CYS 59 2.108 4.494 -1.611 1.00 0.00 C ATOM 68 O CYS 59 2.054 5.444 -0.838 1.00 0.00 O ATOM 69 N VAL 60 1.837 3.258 -1.223 1.00 0.00 N ATOM 70 CA VAL 60 1.428 2.989 0.150 1.00 0.00 C ATOM 71 C VAL 60 2.598 3.047 1.155 1.00 0.00 C ATOM 72 O VAL 60 2.387 3.263 2.346 1.00 0.00 O ATOM 73 N SER 61 3.828 2.877 0.668 1.00 0.00 N ATOM 74 CA SER 61 5.017 2.943 1.521 1.00 0.00 C ATOM 75 C SER 61 5.261 4.387 1.927 1.00 0.00 C ATOM 76 O SER 61 5.573 4.664 3.088 1.00 0.00 O ATOM 77 N ILE 62 5.121 5.293 0.953 1.00 0.00 N ATOM 78 CA ILE 62 5.327 6.729 1.166 1.00 0.00 C ATOM 79 C ILE 62 4.281 7.269 2.117 1.00 0.00 C ATOM 80 O ILE 62 4.578 8.102 2.974 1.00 0.00 O ATOM 81 N TRP 63 3.055 6.791 1.955 1.00 0.00 N ATOM 82 CA TRP 63 1.963 7.229 2.801 1.00 0.00 C ATOM 83 C TRP 63 2.099 6.764 4.243 1.00 0.00 C ATOM 84 O TRP 63 1.836 7.522 5.175 1.00 0.00 O ATOM 85 N LEU 64 2.506 5.512 4.420 1.00 0.00 N ATOM 86 CA LEU 64 2.676 4.928 5.749 1.00 0.00 C ATOM 87 C LEU 64 3.622 5.725 6.650 1.00 0.00 C ATOM 88 O LEU 64 3.586 5.583 7.882 1.00 0.00 O ATOM 89 N GLN 65 4.463 6.564 6.041 1.00 0.00 N ATOM 90 CA GLN 65 5.401 7.372 6.812 1.00 0.00 C ATOM 91 C GLN 65 4.710 8.522 7.534 1.00 0.00 C ATOM 92 O GLN 65 5.248 9.050 8.499 1.00 0.00 O ATOM 93 N LYS 66 3.534 8.930 7.080 1.00 0.00 N ATOM 94 CA LYS 66 2.857 10.001 7.783 1.00 0.00 C ATOM 95 C LYS 66 2.092 9.299 8.900 1.00 0.00 C ATOM 96 O LYS 66 2.126 9.739 10.050 1.00 0.00 O ATOM 97 N SER 67 1.417 8.195 8.561 1.00 0.00 N ATOM 98 CA SER 67 0.693 7.384 9.546 1.00 0.00 C ATOM 99 C SER 67 0.550 5.961 9.024 1.00 0.00 C ATOM 100 O SER 67 0.234 5.735 7.860 1.00 0.00 O ATOM 101 N GLY 68 0.788 5.002 9.910 1.00 0.00 N ATOM 102 CA GLY 68 0.761 3.589 9.571 1.00 0.00 C ATOM 103 C GLY 68 -0.646 2.990 9.488 1.00 0.00 C ATOM 104 O GLY 68 -0.935 1.971 10.110 1.00 0.00 O ATOM 105 N THR 69 -1.518 3.618 8.713 1.00 0.00 N ATOM 106 CA THR 69 -2.876 3.118 8.564 1.00 0.00 C ATOM 107 C THR 69 -3.269 3.039 7.099 1.00 0.00 C ATOM 108 O THR 69 -2.612 3.609 6.244 1.00 0.00 O ATOM 109 N CYS 70 -4.352 2.331 6.808 1.00 0.00 N ATOM 110 CA CYS 70 -4.815 2.215 5.431 1.00 0.00 C ATOM 111 C CYS 70 -5.478 3.509 4.966 1.00 0.00 C ATOM 112 O CYS 70 -6.349 4.052 5.634 1.00 0.00 O ATOM 113 N PRO 71 -5.089 4.005 3.793 1.00 0.00 N ATOM 114 CA PRO 71 -5.671 5.242 3.261 1.00 0.00 C ATOM 115 C PRO 71 -7.208 5.219 3.154 1.00 0.00 C ATOM 116 O PRO 71 -7.861 6.223 3.438 1.00 0.00 O ATOM 117 N VAL 72 -7.778 4.084 2.733 1.00 0.00 N ATOM 118 CA VAL 72 -9.232 3.960 2.549 1.00 0.00 C ATOM 119 C VAL 72 -10.047 3.842 3.835 1.00 0.00 C ATOM 120 O VAL 72 -10.952 4.645 4.066 1.00 0.00 O ATOM 121 N CYS 73 -9.780 2.831 4.651 1.00 0.00 N ATOM 122 CA CYS 73 -10.475 2.754 5.927 1.00 0.00 C ATOM 123 C CYS 73 -9.433 3.407 6.822 1.00 0.00 C ATOM 124 O CYS 73 -8.593 4.154 6.321 1.00 0.00 O ATOM 125 N ARG 74 -9.455 3.165 8.123 1.00 0.00 N ATOM 126 CA ARG 74 -8.422 3.777 8.946 1.00 0.00 C ATOM 127 C ARG 74 -7.896 2.810 9.969 1.00 0.00 C ATOM 128 O ARG 74 -7.529 3.208 11.070 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 128 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 46.98 75.8 62 46.3 134 ARMSMC SECONDARY STRUCTURE . . 20.98 85.3 34 85.0 40 ARMSMC SURFACE . . . . . . . . 53.57 75.0 36 36.0 100 ARMSMC BURIED . . . . . . . . 35.90 76.9 26 76.5 34 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 61 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 55 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 19 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 46 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 15 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 39 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 30 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 14 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 32 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 7 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 11 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 3 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 13 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 4 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 1 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 4 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 1.42 (Number of atoms: 32) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 1.42 32 47.1 68 CRMSCA CRN = ALL/NP . . . . . 0.0445 CRMSCA SECONDARY STRUCTURE . . 0.97 17 85.0 20 CRMSCA SURFACE . . . . . . . . 1.62 19 37.3 51 CRMSCA BURIED . . . . . . . . 1.08 13 76.5 17 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 1.50 128 38.1 336 CRMSMC SECONDARY STRUCTURE . . 0.98 68 68.0 100 CRMSMC SURFACE . . . . . . . . 1.71 76 30.2 252 CRMSMC BURIED . . . . . . . . 1.13 52 61.9 84 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 742 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 700 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 257 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 561 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 181 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 1.50 128 12.6 1014 CRMSALL SECONDARY STRUCTURE . . 0.98 68 20.2 337 CRMSALL SURFACE . . . . . . . . 1.71 76 9.9 765 CRMSALL BURIED . . . . . . . . 1.13 52 20.9 249 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.151 1.000 0.500 32 47.1 68 ERRCA SECONDARY STRUCTURE . . 0.883 1.000 0.500 17 85.0 20 ERRCA SURFACE . . . . . . . . 1.288 1.000 0.500 19 37.3 51 ERRCA BURIED . . . . . . . . 0.952 1.000 0.500 13 76.5 17 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.192 1.000 0.500 128 38.1 336 ERRMC SECONDARY STRUCTURE . . 0.906 1.000 0.500 68 68.0 100 ERRMC SURFACE . . . . . . . . 1.335 1.000 0.500 76 30.2 252 ERRMC BURIED . . . . . . . . 0.984 1.000 0.500 52 61.9 84 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 742 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 700 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 257 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 561 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 181 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.192 1.000 0.500 128 12.6 1014 ERRALL SECONDARY STRUCTURE . . 0.906 1.000 0.500 68 20.2 337 ERRALL SURFACE . . . . . . . . 1.335 1.000 0.500 76 9.9 765 ERRALL BURIED . . . . . . . . 0.984 1.000 0.500 52 20.9 249 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 18 30 31 31 32 32 68 DISTCA CA (P) 26.47 44.12 45.59 45.59 47.06 68 DISTCA CA (RMS) 0.77 1.07 1.12 1.12 1.42 DISTCA ALL (N) 65 120 121 126 128 128 1014 DISTALL ALL (P) 6.41 11.83 11.93 12.43 12.62 1014 DISTALL ALL (RMS) 0.75 1.08 1.09 1.27 1.50 DISTALL END of the results output