####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 264), selected 53 , name T0538TS444_1-D1 # Molecule2: number of CA atoms 53 ( 877), selected 53 , name T0538-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0538TS444_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 38 16 - 53 4.98 9.42 LONGEST_CONTINUOUS_SEGMENT: 38 17 - 54 4.96 9.70 LCS_AVERAGE: 69.74 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 20 10 - 29 1.98 8.89 LCS_AVERAGE: 31.01 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 17 - 28 0.98 10.89 LCS_AVERAGE: 16.63 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 2 N 2 8 15 33 3 4 8 11 13 14 16 18 22 25 26 27 29 31 32 34 35 36 39 40 LCS_GDT L 3 L 3 10 15 34 6 8 10 11 13 14 16 17 18 22 26 27 28 31 32 34 35 36 39 40 LCS_GDT R 4 R 4 10 15 34 6 8 10 11 13 14 16 17 19 25 26 27 29 31 32 34 35 38 39 42 LCS_GDT W 5 W 5 10 15 34 6 8 10 11 13 14 16 22 22 25 26 28 31 33 35 37 41 42 44 45 LCS_GDT T 6 T 6 10 15 34 6 8 10 11 13 14 17 22 22 25 26 28 31 33 35 36 41 42 44 45 LCS_GDT S 7 S 7 10 15 34 6 8 10 11 15 18 19 22 23 25 27 30 31 33 35 38 41 42 44 45 LCS_GDT E 8 E 8 10 15 34 6 8 10 11 15 18 19 22 23 25 27 30 31 33 35 38 41 42 44 45 LCS_GDT A 9 A 9 10 18 34 6 8 10 11 15 18 19 22 23 25 27 32 33 36 38 39 41 43 44 45 LCS_GDT K 10 K 10 10 20 34 4 6 11 15 17 19 21 22 23 25 27 32 33 36 38 39 41 43 44 45 LCS_GDT T 11 T 11 10 20 34 4 6 11 15 17 19 21 22 23 25 27 31 33 34 38 39 41 42 44 45 LCS_GDT K 12 K 12 10 20 34 5 8 11 15 17 19 21 22 23 25 27 32 33 36 38 39 41 43 44 45 LCS_GDT L 13 L 13 7 20 34 4 8 11 15 17 19 21 22 25 27 29 32 33 36 38 41 42 43 44 45 LCS_GDT K 14 K 14 6 20 35 4 5 9 13 15 19 21 22 25 27 29 32 33 36 38 41 42 43 44 45 LCS_GDT N 15 N 15 6 20 35 4 5 8 13 16 19 21 22 25 27 29 32 33 36 38 41 42 43 44 45 LCS_GDT I 16 I 16 7 20 38 4 5 11 15 17 19 21 22 25 27 29 32 33 36 39 41 42 43 44 45 LCS_GDT P 17 P 17 12 20 38 5 9 11 15 17 19 21 22 25 27 29 32 33 36 39 41 42 43 44 45 LCS_GDT F 18 F 18 12 20 38 4 9 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT F 19 F 19 12 20 38 5 9 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT A 20 A 20 12 20 38 5 9 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT R 21 R 21 12 20 38 4 9 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT S 22 S 22 12 20 38 3 7 11 15 17 19 21 22 23 25 29 34 36 37 39 41 42 43 44 45 LCS_GDT Q 23 Q 23 12 20 38 5 9 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT A 24 A 24 12 20 38 4 9 11 14 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT K 25 K 25 12 20 38 4 9 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT A 26 A 26 12 20 38 5 8 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT R 27 R 27 12 20 38 4 8 11 12 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT I 28 I 28 12 20 38 4 9 11 13 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT E 29 E 29 7 20 38 4 8 10 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT Q 30 Q 30 7 16 38 3 5 7 9 12 16 20 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT L 31 L 31 7 16 38 3 6 7 11 13 15 18 20 23 25 30 34 36 37 39 41 42 43 44 45 LCS_GDT A 32 A 32 7 16 38 3 6 7 12 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT R 33 R 33 7 13 38 4 6 7 9 12 16 20 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT Q 34 Q 34 7 13 38 4 6 7 9 11 15 17 19 22 24 26 34 36 37 39 41 42 43 44 45 LCS_GDT A 35 A 35 7 13 38 4 6 7 9 12 16 20 22 23 25 30 34 36 37 39 41 42 43 44 45 LCS_GDT E 36 E 36 7 12 38 4 6 7 9 11 14 16 21 24 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT Q 37 Q 37 4 5 38 3 3 5 5 7 13 15 18 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT D 38 D 38 4 5 38 3 3 5 5 7 9 12 16 20 23 29 34 36 37 39 41 42 43 44 45 LCS_GDT I 39 I 39 7 15 38 3 7 8 10 12 13 15 15 18 22 25 30 36 37 39 41 42 42 44 45 LCS_GDT V 40 V 40 9 15 38 3 7 9 12 12 14 15 15 20 23 28 34 36 37 39 41 42 43 44 45 LCS_GDT T 41 T 41 9 15 38 4 8 11 13 13 14 15 18 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT P 42 P 42 9 15 38 4 9 11 13 13 14 17 21 23 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT E 43 E 43 9 15 38 4 9 11 13 13 14 16 21 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT L 44 L 44 9 15 38 4 9 11 13 13 14 15 18 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT V 45 V 45 9 15 38 4 9 11 13 13 14 15 16 20 25 30 34 36 37 39 41 42 43 44 45 LCS_GDT E 46 E 46 9 15 38 4 9 11 13 13 14 18 22 23 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT Q 47 Q 47 9 15 38 4 9 11 13 13 15 19 22 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT A 48 A 48 9 15 38 4 9 11 13 13 14 15 15 16 25 30 34 36 37 39 41 42 43 44 45 LCS_GDT R 49 R 49 7 15 38 4 6 10 13 13 14 15 15 16 17 25 34 36 37 39 41 42 43 44 45 LCS_GDT L 50 L 50 7 15 38 4 6 10 13 13 14 15 16 20 23 30 34 36 37 39 41 42 43 44 45 LCS_GDT E 51 E 51 7 15 38 4 6 11 13 13 14 16 21 25 27 30 34 36 37 39 41 42 43 44 45 LCS_GDT F 52 F 52 7 15 38 4 9 11 13 13 14 15 15 16 25 30 34 36 37 39 41 42 43 44 45 LCS_GDT G 53 G 53 6 15 38 4 9 11 13 13 14 15 16 20 23 30 34 36 37 39 41 42 43 44 45 LCS_GDT Q 54 Q 54 3 14 38 3 3 3 3 4 10 13 13 14 22 25 31 36 37 39 40 42 42 43 45 LCS_AVERAGE LCS_A: 39.12 ( 16.63 31.01 69.74 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 6 9 11 15 17 19 21 22 25 27 30 34 36 37 39 41 42 43 44 45 GDT PERCENT_AT 11.32 16.98 20.75 28.30 32.08 35.85 39.62 41.51 47.17 50.94 56.60 64.15 67.92 69.81 73.58 77.36 79.25 81.13 83.02 84.91 GDT RMS_LOCAL 0.21 0.64 0.89 1.34 1.50 1.71 2.06 2.22 3.54 3.69 4.29 4.61 4.73 4.82 5.05 5.29 5.39 5.69 5.81 5.93 GDT RMS_ALL_AT 13.84 10.39 10.71 8.98 9.07 9.13 8.86 8.83 8.40 8.41 9.02 9.66 9.67 9.84 9.57 8.88 9.01 8.19 8.32 8.44 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 2 N 2 12.763 3 0.056 0.088 13.696 0.000 0.000 LGA L 3 L 3 13.004 3 0.050 0.087 13.921 0.000 0.000 LGA R 4 R 4 10.948 6 0.048 0.048 11.920 0.000 0.000 LGA W 5 W 5 7.513 9 0.014 0.033 8.516 8.333 3.605 LGA T 6 T 6 7.448 2 0.004 0.020 8.479 15.833 9.728 LGA S 7 S 7 5.535 1 0.154 0.162 6.686 24.048 18.254 LGA E 8 E 8 5.569 4 0.008 0.017 6.744 29.405 14.550 LGA A 9 A 9 4.306 0 0.067 0.067 5.384 43.929 40.381 LGA K 10 K 10 2.433 4 0.037 0.040 3.212 67.262 36.243 LGA T 11 T 11 2.154 2 0.058 0.066 3.260 68.810 46.463 LGA K 12 K 12 1.090 4 0.118 0.121 1.352 83.690 47.249 LGA L 13 L 13 1.024 3 0.214 0.220 1.838 81.786 50.000 LGA K 14 K 14 3.679 4 0.098 0.100 4.787 45.238 23.598 LGA N 15 N 15 3.487 3 0.015 0.021 4.127 51.786 30.536 LGA I 16 I 16 1.011 3 0.055 0.085 1.561 86.190 54.405 LGA P 17 P 17 1.162 2 0.214 0.307 1.779 81.548 57.007 LGA F 18 F 18 0.938 6 0.040 0.042 0.938 90.476 41.126 LGA F 19 F 19 0.663 6 0.021 0.024 0.837 90.476 41.126 LGA A 20 A 20 1.191 0 0.166 0.171 2.314 85.952 81.714 LGA R 21 R 21 1.581 6 0.085 0.083 2.402 75.238 33.247 LGA S 22 S 22 2.396 1 0.036 0.038 3.238 70.833 55.556 LGA Q 23 Q 23 0.380 4 0.111 0.119 1.209 90.595 49.312 LGA A 24 A 24 1.979 0 0.028 0.027 2.841 72.976 69.810 LGA K 25 K 25 1.774 4 0.056 0.062 2.507 81.667 42.646 LGA A 26 A 26 1.079 0 0.131 0.134 2.117 79.762 78.381 LGA R 27 R 27 3.037 6 0.214 0.220 4.187 50.476 22.294 LGA I 28 I 28 2.533 3 0.044 0.044 3.229 67.024 39.762 LGA E 29 E 29 2.045 4 0.016 0.023 4.091 62.143 31.746 LGA Q 30 Q 30 6.460 4 0.099 0.103 8.144 18.214 8.624 LGA L 31 L 31 6.161 3 0.074 0.078 6.592 22.738 13.036 LGA A 32 A 32 3.189 0 0.039 0.045 5.299 39.405 40.190 LGA R 33 R 33 8.100 6 0.166 0.165 10.797 6.905 2.641 LGA Q 34 Q 34 10.071 4 0.044 0.046 11.811 1.190 0.529 LGA A 35 A 35 8.660 0 0.218 0.226 10.225 1.786 4.095 LGA E 36 E 36 10.996 4 0.289 0.282 13.243 0.357 0.159 LGA Q 37 Q 37 11.776 4 0.658 0.603 14.827 0.000 0.000 LGA D 38 D 38 17.498 3 0.146 0.157 19.809 0.000 0.000 LGA I 39 I 39 18.004 3 0.566 0.582 18.235 0.000 0.000 LGA V 40 V 40 14.836 2 0.054 0.058 15.929 0.000 0.000 LGA T 41 T 41 12.477 2 0.120 0.169 13.236 0.000 0.000 LGA P 42 P 42 8.843 2 0.073 0.098 9.954 3.810 2.857 LGA E 43 E 43 9.422 4 0.078 0.079 10.876 1.786 0.794 LGA L 44 L 44 10.236 3 0.111 0.123 11.909 1.071 0.536 LGA V 45 V 45 10.066 2 0.134 0.135 11.363 1.190 0.680 LGA E 46 E 46 8.007 4 0.011 0.015 8.506 4.881 2.963 LGA Q 47 Q 47 7.971 4 0.016 0.019 8.578 6.548 3.228 LGA A 48 A 48 8.260 0 0.096 0.103 9.740 3.452 2.857 LGA R 49 R 49 11.807 6 0.038 0.037 14.182 0.119 0.043 LGA L 50 L 50 12.847 3 0.188 0.194 13.671 0.000 0.000 LGA E 51 E 51 9.457 4 0.109 0.110 11.052 0.357 1.270 LGA F 52 F 52 13.260 6 0.184 0.185 16.793 0.000 0.000 LGA G 53 G 53 17.890 0 0.418 0.418 21.081 0.000 0.000 LGA Q 54 Q 54 18.886 4 0.232 0.234 20.281 0.000 0.000 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 434 264 60.83 53 SUMMARY(RMSD_GDC): 7.668 7.578 7.707 32.439 20.816 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 53 4.0 22 2.22 41.038 39.389 0.947 LGA_LOCAL RMSD: 2.223 Number of atoms: 22 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 8.835 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 7.668 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = 0.943420 * X + 0.035975 * Y + -0.329642 * Z + -2.685011 Y_new = -0.146108 * X + 0.937494 * Y + -0.315843 * Z + 0.211714 Z_new = 0.297675 * X + 0.346136 * Y + 0.889707 * Z + -0.865240 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -0.153650 -0.302256 0.371027 [DEG: -8.8035 -17.3180 21.2583 ] ZXZ: -0.806771 0.474092 0.710267 [DEG: -46.2246 27.1635 40.6953 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0538TS444_1-D1 REMARK 2: T0538-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0538TS444_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 53 4.0 22 2.22 39.389 7.67 REMARK ---------------------------------------------------------- MOLECULE T0538TS444_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0538 REMARK MODEL 1 REMARK PARENT N/A ATOM 6 N ASN 2 -3.374 4.414 -16.936 1.00 1.00 N ATOM 7 CA ASN 2 -2.607 5.033 -15.874 1.00 1.00 C ATOM 8 C ASN 2 -3.032 4.472 -14.526 1.00 1.00 C ATOM 9 O ASN 2 -4.195 4.128 -14.334 1.00 1.00 O ATOM 10 CB ASN 2 -2.845 6.540 -15.891 1.00 1.00 C ATOM 11 N LEU 3 -2.083 4.380 -13.590 1.00 1.00 N ATOM 12 CA LEU 3 -2.362 3.862 -12.266 1.00 1.00 C ATOM 13 C LEU 3 -2.035 4.913 -11.213 1.00 1.00 C ATOM 14 O LEU 3 -1.360 5.896 -11.506 1.00 1.00 O ATOM 15 CB LEU 3 -1.513 2.620 -12.021 1.00 1.00 C ATOM 16 N ARG 4 -2.518 4.701 -9.988 1.00 1.00 N ATOM 17 CA ARG 4 -2.278 5.626 -8.899 1.00 1.00 C ATOM 18 C ARG 4 -1.486 4.942 -7.794 1.00 1.00 C ATOM 19 O ARG 4 -1.915 3.918 -7.266 1.00 1.00 O ATOM 20 CB ARG 4 -3.613 6.108 -8.339 1.00 1.00 C ATOM 21 N TRP 5 -0.328 5.509 -7.448 1.00 1.00 N ATOM 22 CA TRP 5 0.517 4.953 -6.411 1.00 1.00 C ATOM 23 C TRP 5 0.412 5.793 -5.146 1.00 1.00 C ATOM 24 O TRP 5 0.692 6.989 -5.169 1.00 1.00 O ATOM 25 CB TRP 5 1.965 4.942 -6.891 1.00 1.00 C ATOM 26 N THR 6 0.005 5.163 -4.042 1.00 1.00 N ATOM 27 CA THR 6 -0.135 5.852 -2.775 1.00 1.00 C ATOM 28 C THR 6 1.230 6.064 -2.141 1.00 1.00 C ATOM 29 O THR 6 2.182 5.356 -2.460 1.00 1.00 O ATOM 30 CB THR 6 -1.003 5.016 -1.839 1.00 1.00 C ATOM 31 N SER 7 1.325 7.045 -1.239 1.00 1.00 N ATOM 32 CA SER 7 2.571 7.348 -0.565 1.00 1.00 C ATOM 33 C SER 7 3.200 6.070 -0.030 1.00 1.00 C ATOM 34 O SER 7 4.232 5.628 -0.531 1.00 1.00 O ATOM 35 CB SER 7 2.300 8.302 0.594 1.00 1.00 C ATOM 36 N GLU 8 2.576 5.478 0.991 1.00 1.00 N ATOM 37 CA GLU 8 3.074 4.256 1.588 1.00 1.00 C ATOM 38 C GLU 8 3.370 3.227 0.507 1.00 1.00 C ATOM 39 O GLU 8 4.378 2.528 0.572 1.00 1.00 O ATOM 40 CB GLU 8 2.027 3.697 2.547 1.00 1.00 C ATOM 41 N ALA 9 2.486 3.135 -0.489 1.00 1.00 N ATOM 42 CA ALA 9 2.653 2.195 -1.578 1.00 1.00 C ATOM 43 C ALA 9 3.493 2.819 -2.681 1.00 1.00 C ATOM 44 O ALA 9 4.202 2.114 -3.399 1.00 1.00 O ATOM 45 CB ALA 9 1.285 1.819 -2.136 1.00 1.00 C ATOM 46 N LYS 10 3.414 4.144 -2.818 1.00 1.00 N ATOM 47 CA LYS 10 4.164 4.858 -3.832 1.00 1.00 C ATOM 48 C LYS 10 5.656 4.753 -3.548 1.00 1.00 C ATOM 49 O LYS 10 6.427 4.345 -4.414 1.00 1.00 O ATOM 50 CB LYS 10 3.750 6.326 -3.830 1.00 1.00 C ATOM 51 N THR 11 6.060 5.125 -2.331 1.00 1.00 N ATOM 52 CA THR 11 7.454 5.072 -1.938 1.00 1.00 C ATOM 53 C THR 11 7.839 3.648 -1.563 1.00 1.00 C ATOM 54 O THR 11 8.815 3.112 -2.079 1.00 1.00 O ATOM 55 CB THR 11 7.676 5.989 -0.739 1.00 1.00 C ATOM 56 N LYS 12 7.066 3.040 -0.660 1.00 1.00 N ATOM 57 CA LYS 12 7.327 1.685 -0.218 1.00 1.00 C ATOM 58 C LYS 12 7.014 0.701 -1.337 1.00 1.00 C ATOM 59 O LYS 12 7.434 -0.453 -1.287 1.00 1.00 O ATOM 60 CB LYS 12 6.453 1.370 0.991 1.00 1.00 C ATOM 61 N LEU 13 6.273 1.160 -2.347 1.00 1.00 N ATOM 62 CA LEU 13 5.906 0.323 -3.472 1.00 1.00 C ATOM 63 C LEU 13 7.074 -0.574 -3.859 1.00 1.00 C ATOM 64 O LEU 13 7.015 -1.272 -4.867 1.00 1.00 O ATOM 65 CB LEU 13 5.531 1.204 -4.659 1.00 1.00 C ATOM 66 N LYS 14 8.137 -0.552 -3.050 1.00 1.00 N ATOM 67 CA LYS 14 9.312 -1.360 -3.308 1.00 1.00 C ATOM 68 C LYS 14 8.988 -2.833 -3.107 1.00 1.00 C ATOM 69 O LYS 14 9.790 -3.700 -3.448 1.00 1.00 O ATOM 70 CB LYS 14 10.428 -0.952 -2.352 1.00 1.00 C ATOM 71 N ASN 15 7.809 -3.115 -2.549 1.00 1.00 N ATOM 72 CA ASN 15 7.383 -4.478 -2.303 1.00 1.00 C ATOM 73 C ASN 15 6.465 -4.949 -3.422 1.00 1.00 C ATOM 74 O ASN 15 6.194 -6.142 -3.543 1.00 1.00 O ATOM 75 CB ASN 15 6.635 -4.544 -0.975 1.00 1.00 C ATOM 76 N ILE 16 5.986 -4.008 -4.239 1.00 1.00 N ATOM 77 CA ILE 16 5.103 -4.328 -5.343 1.00 1.00 C ATOM 78 C ILE 16 5.795 -4.039 -6.666 1.00 1.00 C ATOM 79 O ILE 16 6.325 -2.948 -6.866 1.00 1.00 O ATOM 80 CB ILE 16 3.836 -3.487 -5.238 1.00 1.00 C ATOM 81 N PRO 17 5.789 -5.020 -7.572 1.00 1.00 N ATOM 82 CA PRO 17 6.414 -4.867 -8.870 1.00 1.00 C ATOM 83 C PRO 17 5.529 -4.030 -9.783 1.00 1.00 C ATOM 84 O PRO 17 4.571 -3.412 -9.324 1.00 1.00 O ATOM 85 CB PRO 17 6.625 -6.243 -9.494 1.00 1.00 C ATOM 86 N PHE 18 5.856 -4.012 -11.077 1.00 1.00 N ATOM 87 CA PHE 18 5.092 -3.253 -12.047 1.00 1.00 C ATOM 88 C PHE 18 3.729 -3.896 -12.259 1.00 1.00 C ATOM 89 O PHE 18 2.719 -3.201 -12.333 1.00 1.00 O ATOM 90 CB PHE 18 5.848 -3.222 -13.371 1.00 1.00 C ATOM 91 N PHE 19 3.706 -5.228 -12.358 1.00 1.00 N ATOM 92 CA PHE 19 2.470 -5.959 -12.560 1.00 1.00 C ATOM 93 C PHE 19 1.591 -5.852 -11.322 1.00 1.00 C ATOM 94 O PHE 19 0.366 -5.837 -11.430 1.00 1.00 O ATOM 95 CB PHE 19 2.788 -7.425 -12.828 1.00 1.00 C ATOM 96 N ALA 20 2.219 -5.777 -10.148 1.00 1.00 N ATOM 97 CA ALA 20 1.494 -5.672 -8.897 1.00 1.00 C ATOM 98 C ALA 20 0.822 -4.310 -8.795 1.00 1.00 C ATOM 99 O ALA 20 -0.113 -4.135 -8.016 1.00 1.00 O ATOM 100 CB ALA 20 2.464 -5.847 -7.734 1.00 1.00 C ATOM 101 N ARG 21 1.301 -3.346 -9.585 1.00 1.00 N ATOM 102 CA ARG 21 0.748 -2.007 -9.579 1.00 1.00 C ATOM 103 C ARG 21 -0.765 -2.067 -9.731 1.00 1.00 C ATOM 104 O ARG 21 -1.470 -1.161 -9.289 1.00 1.00 O ATOM 105 CB ARG 21 1.340 -1.212 -10.738 1.00 1.00 C ATOM 106 N SER 22 -1.264 -3.136 -10.356 1.00 1.00 N ATOM 107 CA SER 22 -2.687 -3.309 -10.562 1.00 1.00 C ATOM 108 C SER 22 -3.411 -3.336 -9.223 1.00 1.00 C ATOM 109 O SER 22 -4.383 -2.613 -9.027 1.00 1.00 O ATOM 110 CB SER 22 -2.934 -4.623 -11.296 1.00 1.00 C ATOM 111 N GLN 23 -2.930 -4.174 -8.303 1.00 1.00 N ATOM 112 CA GLN 23 -3.528 -4.293 -6.988 1.00 1.00 C ATOM 113 C GLN 23 -2.872 -3.318 -6.023 1.00 1.00 C ATOM 114 O GLN 23 -3.503 -2.862 -5.072 1.00 1.00 O ATOM 115 CB GLN 23 -3.343 -5.716 -6.473 1.00 1.00 C ATOM 116 N ALA 24 -1.600 -2.998 -6.270 1.00 1.00 N ATOM 117 CA ALA 24 -0.861 -2.080 -5.426 1.00 1.00 C ATOM 118 C ALA 24 -1.727 -0.877 -5.080 1.00 1.00 C ATOM 119 O ALA 24 -1.695 -0.391 -3.952 1.00 1.00 O ATOM 120 CB ALA 24 0.389 -1.608 -6.162 1.00 1.00 C ATOM 121 N LYS 25 -2.503 -0.398 -6.056 1.00 1.00 N ATOM 122 CA LYS 25 -3.371 0.743 -5.854 1.00 1.00 C ATOM 123 C LYS 25 -4.204 0.548 -4.595 1.00 1.00 C ATOM 124 O LYS 25 -4.186 1.393 -3.700 1.00 1.00 O ATOM 125 CB LYS 25 -4.300 0.889 -7.054 1.00 1.00 C ATOM 126 N ALA 26 -4.935 -0.567 -4.527 1.00 1.00 N ATOM 127 CA ALA 26 -5.769 -0.867 -3.381 1.00 1.00 C ATOM 128 C ALA 26 -4.903 -1.134 -2.158 1.00 1.00 C ATOM 129 O ALA 26 -5.395 -1.115 -1.032 1.00 1.00 O ATOM 130 CB ALA 26 -6.616 -2.100 -3.681 1.00 1.00 C ATOM 131 N ARG 27 -3.611 -1.383 -2.385 1.00 1.00 N ATOM 132 CA ARG 27 -2.683 -1.652 -1.305 1.00 1.00 C ATOM 133 C ARG 27 -2.367 -0.367 -0.554 1.00 1.00 C ATOM 134 O ARG 27 -1.711 -0.399 0.485 1.00 1.00 O ATOM 135 CB ARG 27 -1.396 -2.233 -1.878 1.00 1.00 C ATOM 136 N ILE 28 -2.837 0.766 -1.082 1.00 1.00 N ATOM 137 CA ILE 28 -2.604 2.054 -0.462 1.00 1.00 C ATOM 138 C ILE 28 -3.425 2.177 0.813 1.00 1.00 C ATOM 139 O ILE 28 -2.933 2.671 1.826 1.00 1.00 O ATOM 140 CB ILE 28 -3.004 3.161 -1.431 1.00 1.00 C ATOM 141 N GLU 29 -4.682 1.727 0.761 1.00 1.00 N ATOM 142 CA GLU 29 -5.566 1.789 1.907 1.00 1.00 C ATOM 143 C GLU 29 -4.782 1.525 3.186 1.00 1.00 C ATOM 144 O GLU 29 -5.091 2.092 4.232 1.00 1.00 O ATOM 145 CB GLU 29 -6.659 0.737 1.759 1.00 1.00 C ATOM 146 N GLN 30 -3.767 0.663 3.098 1.00 1.00 N ATOM 147 CA GLN 30 -2.945 0.330 4.244 1.00 1.00 C ATOM 148 C GLN 30 -2.605 1.587 5.028 1.00 1.00 C ATOM 149 O GLN 30 -2.184 1.508 6.181 1.00 1.00 O ATOM 150 CB GLN 30 -1.656 -0.331 3.764 1.00 1.00 C ATOM 151 N LEU 31 -2.788 2.751 4.401 1.00 1.00 N ATOM 152 CA LEU 31 -2.500 4.020 5.040 1.00 1.00 C ATOM 153 C LEU 31 -3.060 4.031 6.455 1.00 1.00 C ATOM 154 O LEU 31 -2.336 4.306 7.409 1.00 1.00 O ATOM 155 CB LEU 31 -3.138 5.148 4.235 1.00 1.00 C ATOM 156 N ALA 32 -4.354 3.731 6.589 1.00 1.00 N ATOM 157 CA ALA 32 -5.006 3.707 7.882 1.00 1.00 C ATOM 158 C ALA 32 -4.441 2.578 8.733 1.00 1.00 C ATOM 159 O ALA 32 -4.152 2.771 9.911 1.00 1.00 O ATOM 160 CB ALA 32 -6.504 3.493 7.692 1.00 1.00 C ATOM 161 N ARG 33 -4.282 1.397 8.129 1.00 1.00 N ATOM 162 CA ARG 33 -3.753 0.244 8.829 1.00 1.00 C ATOM 163 C ARG 33 -2.232 0.248 8.770 1.00 1.00 C ATOM 164 O ARG 33 -1.590 -0.705 9.205 1.00 1.00 O ATOM 165 CB ARG 33 -4.281 -1.029 8.177 1.00 1.00 C ATOM 166 N GLN 34 -1.659 1.326 8.229 1.00 1.00 N ATOM 167 CA GLN 34 -0.219 1.451 8.114 1.00 1.00 C ATOM 168 C GLN 34 0.394 1.705 9.484 1.00 1.00 C ATOM 169 O GLN 34 1.487 1.227 9.774 1.00 1.00 O ATOM 170 CB GLN 34 0.115 2.613 7.186 1.00 1.00 C ATOM 171 N ALA 35 -0.315 2.462 10.326 1.00 1.00 N ATOM 172 CA ALA 35 0.160 2.777 11.657 1.00 1.00 C ATOM 173 C ALA 35 -0.281 1.700 12.639 1.00 1.00 C ATOM 174 O ALA 35 0.521 1.220 13.437 1.00 1.00 O ATOM 175 CB ALA 35 -0.411 4.122 12.093 1.00 1.00 C ATOM 176 N GLU 36 -1.560 1.323 12.577 1.00 1.00 N ATOM 177 CA GLU 36 -2.102 0.307 13.457 1.00 1.00 C ATOM 178 C GLU 36 -1.906 -1.073 12.846 1.00 1.00 C ATOM 179 O GLU 36 -1.987 -2.079 13.545 1.00 1.00 O ATOM 180 CB GLU 36 -3.591 0.560 13.666 1.00 1.00 C ATOM 181 N GLN 37 -1.649 -1.115 11.537 1.00 1.00 N ATOM 182 CA GLN 37 -1.443 -2.367 10.836 1.00 1.00 C ATOM 183 C GLN 37 -0.479 -3.251 11.617 1.00 1.00 C ATOM 184 O GLN 37 -0.495 -4.470 11.469 1.00 1.00 O ATOM 185 CB GLN 37 -0.864 -2.086 9.454 1.00 1.00 C ATOM 186 N ASP 38 0.361 -2.630 12.449 1.00 1.00 N ATOM 187 CA ASP 38 1.326 -3.357 13.246 1.00 1.00 C ATOM 188 C ASP 38 0.760 -4.713 13.645 1.00 1.00 C ATOM 189 O ASP 38 1.465 -5.718 13.604 1.00 1.00 O ATOM 190 CB ASP 38 1.650 -2.556 14.504 1.00 1.00 C ATOM 191 N ILE 39 -0.517 -4.737 14.029 1.00 1.00 N ATOM 192 CA ILE 39 -1.173 -5.965 14.431 1.00 1.00 C ATOM 193 C ILE 39 -1.285 -6.911 13.246 1.00 1.00 C ATOM 194 O ILE 39 -0.803 -8.041 13.304 1.00 1.00 O ATOM 195 CB ILE 39 -2.569 -5.646 14.957 1.00 1.00 C ATOM 196 N VAL 40 -1.921 -6.447 12.168 1.00 1.00 N ATOM 197 CA VAL 40 -2.094 -7.251 10.976 1.00 1.00 C ATOM 198 C VAL 40 -1.051 -6.870 9.932 1.00 1.00 C ATOM 199 O VAL 40 -0.621 -5.720 9.875 1.00 1.00 O ATOM 200 CB VAL 40 -3.488 -7.017 10.404 1.00 1.00 C ATOM 201 N THR 41 -0.650 -7.839 9.109 1.00 1.00 N ATOM 202 CA THR 41 0.337 -7.605 8.074 1.00 1.00 C ATOM 203 C THR 41 -0.318 -6.951 6.865 1.00 1.00 C ATOM 204 O THR 41 -1.364 -7.404 6.404 1.00 1.00 O ATOM 205 CB THR 41 0.958 -8.933 7.656 1.00 1.00 C ATOM 206 N PRO 42 0.300 -5.884 6.355 1.00 1.00 N ATOM 207 CA PRO 42 -0.223 -5.174 5.205 1.00 1.00 C ATOM 208 C PRO 42 -0.321 -6.112 4.011 1.00 1.00 C ATOM 209 O PRO 42 -0.826 -5.729 2.957 1.00 1.00 O ATOM 210 CB PRO 42 0.709 -4.016 4.861 1.00 1.00 C ATOM 211 N GLU 43 0.165 -7.344 4.177 1.00 1.00 N ATOM 212 CA GLU 43 0.130 -8.332 3.116 1.00 1.00 C ATOM 213 C GLU 43 -1.247 -8.973 3.044 1.00 1.00 C ATOM 214 O GLU 43 -1.882 -8.969 1.992 1.00 1.00 O ATOM 215 CB GLU 43 1.176 -9.405 3.391 1.00 1.00 C ATOM 216 N LEU 44 -1.709 -9.527 4.169 1.00 1.00 N ATOM 217 CA LEU 44 -3.007 -10.169 4.230 1.00 1.00 C ATOM 218 C LEU 44 -4.111 -9.129 4.110 1.00 1.00 C ATOM 219 O LEU 44 -4.894 -9.158 3.163 1.00 1.00 O ATOM 220 CB LEU 44 -3.144 -10.901 5.560 1.00 1.00 C ATOM 221 N VAL 45 -4.173 -8.210 5.077 1.00 1.00 N ATOM 222 CA VAL 45 -5.179 -7.166 5.077 1.00 1.00 C ATOM 223 C VAL 45 -5.098 -6.360 3.789 1.00 1.00 C ATOM 224 O VAL 45 -6.037 -5.648 3.440 1.00 1.00 O ATOM 225 CB VAL 45 -4.946 -6.241 6.267 1.00 1.00 C ATOM 226 N GLU 46 -3.970 -6.474 3.083 1.00 1.00 N ATOM 227 CA GLU 46 -3.770 -5.758 1.840 1.00 1.00 C ATOM 228 C GLU 46 -4.398 -6.525 0.686 1.00 1.00 C ATOM 229 O GLU 46 -5.057 -5.936 -0.169 1.00 1.00 O ATOM 230 CB GLU 46 -2.276 -5.595 1.585 1.00 1.00 C ATOM 231 N GLN 47 -4.194 -7.844 0.665 1.00 1.00 N ATOM 232 CA GLN 47 -4.739 -8.688 -0.380 1.00 1.00 C ATOM 233 C GLN 47 -6.184 -9.044 -0.062 1.00 1.00 C ATOM 234 O GLN 47 -7.058 -8.919 -0.917 1.00 1.00 O ATOM 235 CB GLN 47 -3.912 -9.965 -0.483 1.00 1.00 C ATOM 236 N ALA 48 -6.432 -9.493 1.171 1.00 1.00 N ATOM 237 CA ALA 48 -7.766 -9.866 1.595 1.00 1.00 C ATOM 238 C ALA 48 -8.588 -8.620 1.892 1.00 1.00 C ATOM 239 O ALA 48 -9.668 -8.439 1.335 1.00 1.00 O ATOM 240 CB ALA 48 -7.674 -10.724 2.854 1.00 1.00 C ATOM 241 N ARG 49 -8.072 -7.760 2.775 1.00 1.00 N ATOM 242 CA ARG 49 -8.757 -6.537 3.141 1.00 1.00 C ATOM 243 C ARG 49 -9.413 -5.916 1.916 1.00 1.00 C ATOM 244 O ARG 49 -10.561 -5.483 1.977 1.00 1.00 O ATOM 245 CB ARG 49 -7.754 -5.552 3.731 1.00 1.00 C ATOM 246 N LEU 50 -8.679 -5.875 0.802 1.00 1.00 N ATOM 247 CA LEU 50 -9.189 -5.309 -0.431 1.00 1.00 C ATOM 248 C LEU 50 -9.480 -6.417 -1.433 1.00 1.00 C ATOM 249 O LEU 50 -10.027 -6.156 -2.503 1.00 1.00 O ATOM 250 CB LEU 50 -8.152 -4.356 -1.016 1.00 1.00 C ATOM 251 N GLU 51 -9.114 -7.651 -1.084 1.00 1.00 N ATOM 252 CA GLU 51 -9.336 -8.789 -1.952 1.00 1.00 C ATOM 253 C GLU 51 -10.816 -8.914 -2.283 1.00 1.00 C ATOM 254 O GLU 51 -11.184 -9.572 -3.255 1.00 1.00 O ATOM 255 CB GLU 51 -8.867 -10.060 -1.251 1.00 1.00 C ATOM 256 N PHE 52 -11.666 -8.278 -1.473 1.00 1.00 N ATOM 257 CA PHE 52 -13.100 -8.319 -1.682 1.00 1.00 C ATOM 258 C PHE 52 -13.515 -7.235 -2.666 1.00 1.00 C ATOM 259 O PHE 52 -14.702 -7.055 -2.928 1.00 1.00 O ATOM 260 CB PHE 52 -13.810 -8.094 -0.351 1.00 1.00 C ATOM 261 N GLY 53 -12.533 -6.512 -3.209 1.00 1.00 N ATOM 262 CA GLY 53 -12.799 -5.450 -4.160 1.00 1.00 C ATOM 263 C GLY 53 -13.153 -4.167 -3.424 1.00 1.00 C ATOM 264 O GLY 53 -14.138 -3.511 -3.755 1.00 1.00 O ATOM 265 N GLN 54 -12.347 -3.809 -2.422 1.00 1.00 N ATOM 266 CA GLN 54 -12.577 -2.609 -1.643 1.00 1.00 C ATOM 267 C GLN 54 -11.404 -1.652 -1.798 1.00 1.00 C ATOM 268 O GLN 54 -11.317 -0.653 -1.087 1.00 1.00 O ATOM 269 CB GLN 54 -12.735 -2.982 -0.174 1.00 1.00 C TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 264 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 39.90 75.0 104 100.0 104 ARMSMC SECONDARY STRUCTURE . . 28.24 79.7 74 100.0 74 ARMSMC SURFACE . . . . . . . . 45.97 67.6 74 100.0 74 ARMSMC BURIED . . . . . . . . 17.55 93.3 30 100.0 30 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 31 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 7.67 (Number of atoms: 53) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 7.67 53 100.0 53 CRMSCA CRN = ALL/NP . . . . . 0.1447 CRMSCA SECONDARY STRUCTURE . . 5.95 37 100.0 37 CRMSCA SURFACE . . . . . . . . 7.94 38 100.0 38 CRMSCA BURIED . . . . . . . . 6.94 15 100.0 15 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 7.71 264 100.0 264 CRMSMC SECONDARY STRUCTURE . . 6.04 184 100.0 184 CRMSMC SURFACE . . . . . . . . 8.02 189 100.0 189 CRMSMC BURIED . . . . . . . . 6.86 75 100.0 75 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 8.18 52 7.8 665 CRMSSC RELIABLE SIDE CHAINS . 8.18 52 8.2 635 CRMSSC SECONDARY STRUCTURE . . 6.82 36 7.7 467 CRMSSC SURFACE . . . . . . . . 8.42 37 7.6 486 CRMSSC BURIED . . . . . . . . 7.54 15 8.4 179 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 7.71 264 30.1 877 CRMSALL SECONDARY STRUCTURE . . 6.04 184 29.9 615 CRMSALL SURFACE . . . . . . . . 8.02 189 29.6 638 CRMSALL BURIED . . . . . . . . 6.86 75 31.4 239 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.859 0.690 0.345 53 100.0 53 ERRCA SECONDARY STRUCTURE . . 4.478 0.643 0.322 37 100.0 37 ERRCA SURFACE . . . . . . . . 6.191 0.707 0.354 38 100.0 38 ERRCA BURIED . . . . . . . . 5.017 0.648 0.324 15 100.0 15 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.867 0.691 0.347 264 100.0 264 ERRMC SECONDARY STRUCTURE . . 4.517 0.645 0.325 184 100.0 184 ERRMC SURFACE . . . . . . . . 6.214 0.704 0.352 189 100.0 189 ERRMC BURIED . . . . . . . . 4.995 0.659 0.335 75 100.0 75 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 6.450 0.716 0.358 52 7.8 665 ERRSC RELIABLE SIDE CHAINS . 6.450 0.716 0.358 52 8.2 635 ERRSC SECONDARY STRUCTURE . . 5.347 0.682 0.341 36 7.7 467 ERRSC SURFACE . . . . . . . . 6.730 0.722 0.361 37 7.6 486 ERRSC BURIED . . . . . . . . 5.761 0.700 0.350 15 8.4 179 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 5.867 0.691 0.347 264 30.1 877 ERRALL SECONDARY STRUCTURE . . 4.517 0.645 0.325 184 29.9 615 ERRALL SURFACE . . . . . . . . 6.214 0.704 0.352 189 29.6 638 ERRALL BURIED . . . . . . . . 4.995 0.659 0.335 75 31.4 239 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 2 5 18 44 53 53 DISTCA CA (P) 0.00 3.77 9.43 33.96 83.02 53 DISTCA CA (RMS) 0.00 1.67 2.13 3.67 6.01 DISTCA ALL (N) 2 8 27 90 219 264 877 DISTALL ALL (P) 0.23 0.91 3.08 10.26 24.97 877 DISTALL ALL (RMS) 0.70 1.46 2.22 3.63 6.00 DISTALL END of the results output