####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 212), selected 53 , name T0538TS328_1-D1 # Molecule2: number of CA atoms 53 ( 877), selected 53 , name T0538-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0538TS328_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 25 30 - 54 4.71 16.96 LCS_AVERAGE: 43.75 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 12 23 - 34 1.22 16.67 LCS_AVERAGE: 18.01 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 11 23 - 33 0.91 16.66 LCS_AVERAGE: 12.78 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 2 N 2 3 5 22 0 3 3 4 6 15 17 18 19 20 22 22 24 24 25 25 26 28 29 30 LCS_GDT L 3 L 3 3 5 22 3 3 3 6 11 15 17 18 20 20 22 22 24 24 25 25 26 28 29 30 LCS_GDT R 4 R 4 3 5 22 3 3 5 6 10 13 14 17 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT W 5 W 5 3 9 22 3 3 4 5 8 10 11 13 16 17 19 21 22 23 24 25 26 28 30 31 LCS_GDT T 6 T 6 8 11 22 8 8 8 8 10 10 11 12 13 14 15 17 20 20 22 25 26 27 30 31 LCS_GDT S 7 S 7 8 11 22 8 8 8 9 10 10 11 12 14 15 18 19 20 22 23 25 26 27 30 31 LCS_GDT E 8 E 8 8 11 22 8 8 8 9 10 10 11 13 15 17 19 19 20 22 23 25 26 27 30 31 LCS_GDT A 9 A 9 8 11 22 8 8 8 9 10 10 11 13 15 17 19 19 20 22 23 25 26 27 30 31 LCS_GDT K 10 K 10 8 11 22 8 8 8 9 10 10 11 13 15 17 19 19 20 22 23 25 26 27 30 31 LCS_GDT T 11 T 11 8 11 22 8 8 8 9 10 10 11 13 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT K 12 K 12 8 11 22 8 8 8 9 10 10 11 13 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT L 13 L 13 8 11 22 8 8 8 9 10 10 11 12 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT K 14 K 14 4 11 22 4 4 4 9 10 10 11 13 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT N 15 N 15 4 11 22 4 4 4 5 8 10 11 13 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT I 16 I 16 4 11 22 4 4 4 9 10 10 11 13 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT P 17 P 17 4 7 22 3 3 4 5 6 8 10 13 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT F 18 F 18 3 6 22 3 3 3 6 7 8 10 13 15 17 19 19 20 22 23 25 26 27 28 29 LCS_GDT F 19 F 19 3 4 22 3 3 4 6 6 8 10 13 15 17 19 19 20 22 23 25 26 28 29 29 LCS_GDT A 20 A 20 3 4 22 3 3 4 6 6 7 9 12 15 17 19 19 20 22 23 25 26 28 30 31 LCS_GDT R 21 R 21 3 4 22 3 3 4 4 6 10 10 13 14 16 19 19 20 23 24 25 26 28 30 31 LCS_GDT S 22 S 22 3 4 22 3 3 5 6 10 13 14 17 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT Q 23 Q 23 11 12 22 0 3 7 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT A 24 A 24 11 12 20 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT K 25 K 25 11 12 20 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 29 30 LCS_GDT A 26 A 26 11 12 20 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 29 30 LCS_GDT R 27 R 27 11 12 20 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT I 28 I 28 11 12 20 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT E 29 E 29 11 12 20 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT Q 30 Q 30 11 12 25 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT L 31 L 31 11 12 25 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT A 32 A 32 11 12 25 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT R 33 R 33 11 12 25 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT Q 34 Q 34 3 12 25 3 3 4 9 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT A 35 A 35 3 8 25 3 3 4 5 8 8 12 14 16 17 20 22 24 24 25 25 26 27 30 31 LCS_GDT E 36 E 36 7 8 25 4 5 7 8 10 11 12 15 17 18 19 21 24 24 25 25 26 27 30 31 LCS_GDT Q 37 Q 37 7 8 25 4 5 7 8 10 11 12 15 17 18 19 21 21 23 25 25 26 27 28 30 LCS_GDT D 38 D 38 7 8 25 4 5 7 8 10 11 12 15 17 18 19 21 21 23 25 25 26 27 28 29 LCS_GDT I 39 I 39 7 8 25 4 5 7 8 10 11 12 15 17 18 19 21 21 23 25 25 26 27 28 28 LCS_GDT V 40 V 40 7 8 25 4 5 7 8 10 11 12 15 17 18 19 21 21 23 25 25 26 27 28 28 LCS_GDT T 41 T 41 7 8 25 4 5 7 8 10 11 12 15 17 18 19 21 21 23 25 25 26 27 28 28 LCS_GDT P 42 P 42 7 8 25 4 5 7 8 10 11 12 15 17 18 19 21 21 23 25 25 26 27 28 28 LCS_GDT E 43 E 43 7 11 25 6 6 6 9 9 11 11 15 17 18 19 21 21 23 25 25 26 27 28 28 LCS_GDT L 44 L 44 7 11 25 6 6 6 9 9 11 11 11 12 13 15 17 18 21 23 23 26 27 28 28 LCS_GDT V 45 V 45 7 11 25 6 6 6 9 9 11 11 11 12 13 16 18 21 22 25 25 26 27 28 28 LCS_GDT E 46 E 46 7 11 25 6 6 7 9 10 11 12 15 17 18 19 21 21 23 25 25 26 28 29 31 LCS_GDT Q 47 Q 47 7 11 25 6 6 6 9 9 11 11 15 17 18 19 21 21 23 25 25 26 28 30 31 LCS_GDT A 48 A 48 7 11 25 6 6 6 9 9 11 12 15 17 18 19 21 23 24 25 25 26 28 30 31 LCS_GDT R 49 R 49 7 11 25 3 5 6 9 10 11 12 16 17 19 22 22 24 24 25 25 26 28 30 31 LCS_GDT L 50 L 50 6 11 25 3 5 6 9 10 13 16 17 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT E 51 E 51 6 11 25 3 5 6 9 11 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT F 52 F 52 6 11 25 3 5 6 7 9 11 12 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT G 53 G 53 6 11 25 3 5 6 7 9 11 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_GDT Q 54 Q 54 3 3 25 3 3 5 9 11 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 LCS_AVERAGE LCS_A: 24.85 ( 12.78 18.01 43.75 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 8 10 10 11 12 15 17 18 20 20 22 22 24 24 25 25 26 28 30 31 GDT PERCENT_AT 15.09 18.87 18.87 20.75 22.64 28.30 32.08 33.96 37.74 37.74 41.51 41.51 45.28 45.28 47.17 47.17 49.06 52.83 56.60 58.49 GDT RMS_LOCAL 0.26 0.43 0.43 0.91 1.22 2.06 2.35 2.49 2.98 2.88 3.26 3.26 3.80 3.80 4.04 4.04 4.34 5.53 6.94 7.13 GDT RMS_ALL_AT 22.83 16.74 16.74 16.66 16.67 16.52 16.58 16.61 15.74 16.25 15.95 15.95 15.79 15.79 15.77 15.77 15.44 14.60 12.44 12.34 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 2 N 2 3.092 4 0.054 0.054 3.211 63.571 31.786 LGA L 3 L 3 2.363 4 0.621 0.621 4.390 56.190 28.095 LGA R 4 R 4 5.990 7 0.504 0.504 9.073 17.738 6.450 LGA W 5 W 5 11.283 10 0.616 0.616 15.245 0.714 0.204 LGA T 6 T 6 16.896 3 0.627 0.627 18.652 0.000 0.000 LGA S 7 S 7 19.312 2 0.019 0.019 21.930 0.000 0.000 LGA E 8 E 8 21.779 5 0.019 0.019 23.919 0.000 0.000 LGA A 9 A 9 21.291 1 0.023 0.023 23.145 0.000 0.000 LGA K 10 K 10 22.495 5 0.059 0.059 25.687 0.000 0.000 LGA T 11 T 11 26.822 3 0.000 0.000 29.731 0.000 0.000 LGA K 12 K 12 28.398 5 0.030 0.030 30.290 0.000 0.000 LGA L 13 L 13 27.136 4 0.412 0.412 27.452 0.000 0.000 LGA K 14 K 14 28.372 5 0.082 0.082 30.552 0.000 0.000 LGA N 15 N 15 32.681 4 0.172 0.172 33.444 0.000 0.000 LGA I 16 I 16 31.967 4 0.658 0.658 32.378 0.000 0.000 LGA P 17 P 17 30.360 3 0.587 0.587 30.683 0.000 0.000 LGA F 18 F 18 26.404 7 0.450 0.450 28.073 0.000 0.000 LGA F 19 F 19 22.507 7 0.632 0.632 24.386 0.000 0.000 LGA A 20 A 20 16.280 1 0.523 0.523 18.723 0.000 0.000 LGA R 21 R 21 14.134 7 0.554 0.554 14.883 0.000 0.000 LGA S 22 S 22 7.407 2 0.561 0.561 10.042 13.214 8.810 LGA Q 23 Q 23 2.194 5 0.534 0.534 4.050 64.048 28.466 LGA A 24 A 24 1.732 1 0.434 0.434 1.824 75.000 60.000 LGA K 25 K 25 1.483 5 0.093 0.093 1.483 83.690 37.196 LGA A 26 A 26 1.629 1 0.042 0.042 1.629 77.143 61.714 LGA R 27 R 27 2.065 7 0.038 0.038 2.065 72.976 26.537 LGA I 28 I 28 2.181 4 0.030 0.030 2.181 68.810 34.405 LGA E 29 E 29 1.501 5 0.019 0.019 1.501 79.286 35.238 LGA Q 30 Q 30 0.323 5 0.054 0.054 0.565 97.619 43.386 LGA L 31 L 31 2.417 4 0.035 0.035 3.100 63.333 31.667 LGA A 32 A 32 3.424 1 0.145 0.145 3.424 53.571 42.857 LGA R 33 R 33 1.953 7 0.655 0.655 2.237 70.952 25.801 LGA Q 34 Q 34 2.669 5 0.059 0.059 3.632 53.810 23.915 LGA A 35 A 35 7.083 1 0.561 0.561 8.917 12.857 10.286 LGA E 36 E 36 9.069 5 0.449 0.449 12.957 2.143 0.952 LGA Q 37 Q 37 15.060 5 0.037 0.037 16.049 0.000 0.000 LGA D 38 D 38 19.726 4 0.127 0.127 22.019 0.000 0.000 LGA I 39 I 39 22.820 4 0.032 0.032 22.820 0.000 0.000 LGA V 40 V 40 19.596 3 0.047 0.047 23.538 0.000 0.000 LGA T 41 T 41 23.820 3 0.412 0.412 23.820 0.000 0.000 LGA P 42 P 42 21.851 3 0.672 0.672 22.679 0.000 0.000 LGA E 43 E 43 23.345 5 0.610 0.610 23.345 0.000 0.000 LGA L 44 L 44 20.146 4 0.034 0.034 21.766 0.000 0.000 LGA V 45 V 45 17.318 3 0.026 0.026 19.008 0.000 0.000 LGA E 46 E 46 14.785 5 0.098 0.098 16.054 0.000 0.000 LGA Q 47 Q 47 11.841 5 0.036 0.036 13.492 2.857 1.270 LGA A 48 A 48 8.757 1 0.212 0.212 10.074 10.595 8.476 LGA R 49 R 49 6.273 7 0.136 0.136 7.744 31.548 11.472 LGA L 50 L 50 5.195 4 0.046 0.046 5.234 31.667 15.833 LGA E 51 E 51 3.167 5 0.059 0.059 4.220 48.810 21.693 LGA F 52 F 52 3.880 7 0.242 0.242 5.629 45.833 16.667 LGA G 53 G 53 3.158 0 0.425 0.425 3.700 51.905 51.905 LGA Q 54 Q 54 3.006 5 0.520 0.520 4.643 49.405 21.958 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 434 212 48.85 53 SUMMARY(RMSD_GDC): 11.376 11.162 11.162 24.515 12.963 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 53 4.0 18 2.49 30.189 28.072 0.694 LGA_LOCAL RMSD: 2.492 Number of atoms: 18 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 16.609 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 11.376 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.681484 * X + -0.285197 * Y + -0.673975 * Z + 102.937439 Y_new = -0.591942 * X + -0.326719 * Y + 0.736790 * Z + -52.927216 Z_new = -0.430331 * X + 0.901065 * Y + 0.053833 * Z + -72.334793 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -2.426394 0.444859 1.511123 [DEG: -139.0221 25.4885 86.5810 ] ZXZ: -2.400690 1.516937 -0.445551 [DEG: -137.5494 86.9141 -25.5282 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0538TS328_1-D1 REMARK 2: T0538-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0538TS328_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 53 4.0 18 2.49 28.072 11.38 REMARK ---------------------------------------------------------- MOLECULE T0538TS328_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK PFRMAT TS REMARK TARGET T0538 REMARK MODEL 1 REMARK PARENT 2jg1_A ATOM 5 N ASN 2 -5.582 12.208 -4.905 1.00 3.00 N ATOM 6 CA ASN 2 -5.011 11.718 -3.662 1.00 3.00 C ATOM 7 C ASN 2 -5.144 10.198 -3.551 1.00 3.00 C ATOM 8 O ASN 2 -6.078 9.593 -4.086 1.00 3.00 O ATOM 9 N LEU 3 -4.183 9.602 -2.853 1.00 3.00 N ATOM 10 CA LEU 3 -4.095 8.169 -2.632 1.00 3.00 C ATOM 11 C LEU 3 -5.357 7.626 -1.957 1.00 3.00 C ATOM 12 O LEU 3 -5.751 6.482 -2.185 1.00 3.00 O ATOM 13 N ARG 4 -5.981 8.471 -1.144 1.00 3.00 N ATOM 14 CA ARG 4 -7.149 8.111 -0.355 1.00 3.00 C ATOM 15 C ARG 4 -8.493 8.290 -1.082 1.00 3.00 C ATOM 16 O ARG 4 -9.548 8.224 -0.451 1.00 3.00 O ATOM 17 N TRP 5 -8.473 8.530 -2.390 1.00 3.00 N ATOM 18 CA TRP 5 -9.711 8.944 -3.070 1.00 3.00 C ATOM 19 C TRP 5 -10.843 7.924 -2.983 1.00 3.00 C ATOM 20 O TRP 5 -11.986 8.305 -2.744 1.00 3.00 O ATOM 21 N THR 6 -10.525 6.646 -3.177 1.00 3.00 N ATOM 22 CA THR 6 -11.527 5.586 -3.030 1.00 3.00 C ATOM 23 C THR 6 -12.001 5.480 -1.585 1.00 3.00 C ATOM 24 O THR 6 -13.182 5.223 -1.331 1.00 3.00 O ATOM 25 N SER 7 -11.075 5.681 -0.644 1.00 3.00 N ATOM 26 CA SER 7 -11.428 5.698 0.780 1.00 3.00 C ATOM 27 C SER 7 -12.440 6.801 1.074 1.00 3.00 C ATOM 28 O SER 7 -13.416 6.577 1.801 1.00 3.00 O ATOM 29 N GLU 8 -12.214 7.983 0.499 1.00 3.00 N ATOM 30 CA GLU 8 -13.146 9.121 0.597 1.00 3.00 C ATOM 31 C GLU 8 -14.524 8.807 -0.003 1.00 3.00 C ATOM 32 O GLU 8 -15.550 9.216 0.540 1.00 3.00 O ATOM 33 N ALA 9 -14.533 8.124 -1.152 1.00 3.00 N ATOM 34 CA ALA 9 -15.783 7.726 -1.815 1.00 3.00 C ATOM 35 C ALA 9 -16.543 6.706 -0.964 1.00 3.00 C ATOM 36 O ALA 9 -17.741 6.855 -0.749 1.00 3.00 O ATOM 37 N LYS 10 -15.833 5.690 -0.468 1.00 3.00 N ATOM 38 CA LYS 10 -16.437 4.643 0.371 1.00 3.00 C ATOM 39 C LYS 10 -17.026 5.209 1.678 1.00 3.00 C ATOM 40 O LYS 10 -18.081 4.754 2.143 1.00 3.00 O ATOM 41 N THR 11 -16.354 6.207 2.246 1.00 3.00 N ATOM 42 CA THR 11 -16.868 6.971 3.386 1.00 3.00 C ATOM 43 C THR 11 -18.230 7.615 3.107 1.00 3.00 C ATOM 44 O THR 11 -19.120 7.554 3.953 1.00 3.00 O ATOM 45 N LYS 12 -18.380 8.237 1.936 1.00 3.00 N ATOM 46 CA LYS 12 -19.650 8.831 1.510 1.00 3.00 C ATOM 47 C LYS 12 -20.763 7.778 1.399 1.00 3.00 C ATOM 48 O LYS 12 -21.922 8.055 1.724 1.00 3.00 O ATOM 49 N LEU 13 -20.405 6.579 0.938 1.00 3.00 N ATOM 50 CA LEU 13 -21.352 5.468 0.837 1.00 3.00 C ATOM 51 C LEU 13 -20.745 4.058 0.810 1.00 3.00 C ATOM 52 O LEU 13 -21.082 3.247 -0.041 1.00 3.00 O ATOM 53 N LYS 14 -19.849 3.753 1.739 1.00 3.00 N ATOM 54 CA LYS 14 -19.260 2.413 1.790 1.00 3.00 C ATOM 55 C LYS 14 -20.361 1.388 2.042 1.00 3.00 C ATOM 56 O LYS 14 -20.413 0.336 1.411 1.00 3.00 O ATOM 57 N ASN 15 -21.223 1.710 2.994 1.00 3.00 N ATOM 58 CA ASN 15 -22.306 0.824 3.352 1.00 3.00 C ATOM 59 C ASN 15 -23.342 0.710 2.242 1.00 3.00 C ATOM 60 O ASN 15 -23.760 -0.402 1.912 1.00 3.00 O ATOM 61 N ILE 16 -23.727 1.853 1.681 1.00 3.00 N ATOM 62 CA ILE 16 -24.739 1.947 0.618 1.00 3.00 C ATOM 63 C ILE 16 -24.336 1.592 -0.837 1.00 3.00 C ATOM 64 O ILE 16 -25.125 1.016 -1.576 1.00 3.00 O ATOM 65 N PRO 17 -23.118 1.932 -1.266 1.00 3.00 N ATOM 66 CA PRO 17 -22.742 1.646 -2.631 1.00 3.00 C ATOM 67 C PRO 17 -21.867 0.415 -2.767 1.00 3.00 C ATOM 68 O PRO 17 -22.132 -0.451 -3.609 1.00 3.00 O ATOM 69 N PHE 18 -20.820 0.324 -1.955 1.00 3.00 N ATOM 70 CA PHE 18 -19.898 -0.812 -2.039 1.00 3.00 C ATOM 71 C PHE 18 -19.342 -2.184 -2.411 1.00 3.00 C ATOM 72 O PHE 18 -18.860 -2.930 -1.540 1.00 3.00 O ATOM 73 N PHE 19 -19.415 -2.508 -3.699 1.00 3.00 N ATOM 74 CA PHE 19 -18.722 -3.662 -4.260 1.00 3.00 C ATOM 75 C PHE 19 -17.446 -3.150 -4.954 1.00 3.00 C ATOM 76 O PHE 19 -17.527 -2.361 -5.890 1.00 3.00 O ATOM 77 N ALA 20 -16.284 -3.608 -4.494 1.00 3.00 N ATOM 78 CA ALA 20 -15.002 -3.060 -4.933 1.00 3.00 C ATOM 79 C ALA 20 -14.124 -4.062 -5.674 1.00 3.00 C ATOM 80 O ALA 20 -13.842 -5.142 -5.171 1.00 3.00 O ATOM 81 N ARG 21 -13.680 -3.687 -6.870 1.00 3.00 N ATOM 82 CA ARG 21 -12.819 -4.548 -7.668 1.00 3.00 C ATOM 83 C ARG 21 -11.585 -3.761 -8.129 1.00 3.00 C ATOM 84 O ARG 21 -11.541 -3.245 -9.255 1.00 3.00 O ATOM 85 N SER 22 -10.601 -3.660 -7.239 1.00 3.00 N ATOM 86 CA SER 22 -9.273 -3.146 -7.596 1.00 3.00 C ATOM 87 C SER 22 -8.166 -4.075 -7.105 1.00 3.00 C ATOM 88 O SER 22 -8.429 -5.068 -6.424 1.00 3.00 O ATOM 89 N GLN 23 -6.923 -3.751 -7.451 1.00 3.00 N ATOM 90 CA GLN 23 -5.815 -4.627 -7.101 1.00 3.00 C ATOM 91 C GLN 23 -4.592 -3.868 -6.612 1.00 3.00 C ATOM 92 O GLN 23 -4.549 -2.629 -6.655 1.00 3.00 O ATOM 93 N ALA 24 -3.606 -4.625 -6.138 1.00 3.00 N ATOM 94 CA ALA 24 -2.322 -4.076 -5.718 1.00 3.00 C ATOM 95 C ALA 24 -2.450 -3.004 -4.665 1.00 3.00 C ATOM 96 O ALA 24 -3.267 -3.114 -3.742 1.00 3.00 O ATOM 97 N LYS 25 -1.643 -1.956 -4.819 1.00 3.00 N ATOM 98 CA LYS 25 -1.604 -0.857 -3.865 1.00 3.00 C ATOM 99 C LYS 25 -2.931 -0.121 -3.749 1.00 3.00 C ATOM 100 O LYS 25 -3.235 0.439 -2.705 1.00 3.00 O ATOM 101 N ALA 26 -3.714 -0.113 -4.824 1.00 3.00 N ATOM 102 CA ALA 26 -5.015 0.552 -4.797 1.00 3.00 C ATOM 103 C ALA 26 -5.916 -0.136 -3.767 1.00 3.00 C ATOM 104 O ALA 26 -6.519 0.528 -2.919 1.00 3.00 O ATOM 105 N ARG 27 -5.973 -1.465 -3.826 1.00 3.00 N ATOM 106 CA ARG 27 -6.753 -2.247 -2.875 1.00 3.00 C ATOM 107 C ARG 27 -6.203 -2.131 -1.461 1.00 3.00 C ATOM 108 O ARG 27 -6.972 -1.983 -0.509 1.00 3.00 O ATOM 109 N ILE 28 -4.872 -2.186 -1.349 1.00 3.00 N ATOM 110 CA ILE 28 -4.163 -2.114 -0.066 1.00 3.00 C ATOM 111 C ILE 28 -4.530 -0.856 0.723 1.00 3.00 C ATOM 112 O ILE 28 -4.797 -0.921 1.933 1.00 3.00 O ATOM 113 N GLU 29 -4.550 0.284 0.033 1.00 3.00 N ATOM 114 CA GLU 29 -4.900 1.573 0.638 1.00 3.00 C ATOM 115 C GLU 29 -6.331 1.573 1.179 1.00 3.00 C ATOM 116 O GLU 29 -6.624 2.203 2.206 1.00 3.00 O ATOM 117 N GLN 30 -7.225 0.859 0.500 1.00 3.00 N ATOM 118 CA GLN 30 -8.606 0.770 0.976 1.00 3.00 C ATOM 119 C GLN 30 -8.685 -0.068 2.268 1.00 3.00 C ATOM 120 O GLN 30 -9.325 0.338 3.245 1.00 3.00 O ATOM 121 N LEU 31 -8.009 -1.217 2.258 1.00 3.00 N ATOM 122 CA LEU 31 -8.072 -2.206 3.345 1.00 3.00 C ATOM 123 C LEU 31 -7.583 -1.656 4.681 1.00 3.00 C ATOM 124 O LEU 31 -8.109 -2.009 5.743 1.00 3.00 O ATOM 125 N ALA 32 -6.587 -0.778 4.607 1.00 3.00 N ATOM 126 CA ALA 32 -6.000 -0.116 5.768 1.00 3.00 C ATOM 127 C ALA 32 -6.811 1.069 6.268 1.00 3.00 C ATOM 128 O ALA 32 -6.534 1.599 7.346 1.00 3.00 O ATOM 129 N ARG 33 -7.787 1.517 5.483 1.00 3.00 N ATOM 130 CA ARG 33 -8.601 2.650 5.901 1.00 3.00 C ATOM 131 C ARG 33 -9.831 2.173 6.673 1.00 3.00 C ATOM 132 O ARG 33 -10.302 1.059 6.452 1.00 3.00 O ATOM 133 N GLN 34 -10.328 2.999 7.609 1.00 3.00 N ATOM 134 CA GLN 34 -11.456 2.579 8.449 1.00 3.00 C ATOM 135 C GLN 34 -12.781 2.325 7.709 1.00 3.00 C ATOM 136 O GLN 34 -13.599 1.535 8.187 1.00 3.00 O ATOM 137 N ALA 35 -12.984 2.969 6.560 1.00 3.00 N ATOM 138 CA ALA 35 -14.239 2.851 5.815 1.00 3.00 C ATOM 139 C ALA 35 -14.218 1.712 4.794 1.00 3.00 C ATOM 140 O ALA 35 -13.432 1.723 3.842 1.00 3.00 O ATOM 141 N GLU 36 -15.113 0.747 4.992 1.00 3.00 N ATOM 142 CA GLU 36 -14.986 -0.560 4.351 1.00 3.00 C ATOM 143 C GLU 36 -15.934 -0.801 3.184 1.00 3.00 C ATOM 144 O GLU 36 -17.111 -0.421 3.245 1.00 3.00 O ATOM 145 N GLN 37 -15.428 -1.448 2.116 1.00 3.00 N ATOM 146 CA GLN 37 -16.326 -1.994 1.110 1.00 3.00 C ATOM 147 C GLN 37 -17.106 -3.184 1.684 1.00 3.00 C ATOM 148 O GLN 37 -16.649 -3.831 2.638 1.00 3.00 O ATOM 149 N ASP 38 -18.277 -3.448 1.109 1.00 3.00 N ATOM 150 CA ASP 38 -19.127 -4.552 1.525 1.00 3.00 C ATOM 151 C ASP 38 -18.618 -5.829 0.882 1.00 3.00 C ATOM 152 O ASP 38 -18.632 -6.892 1.501 1.00 3.00 O ATOM 153 N ILE 39 -18.167 -5.713 -0.366 1.00 3.00 N ATOM 154 CA ILE 39 -17.648 -6.832 -1.133 1.00 3.00 C ATOM 155 C ILE 39 -16.308 -6.435 -1.759 1.00 3.00 C ATOM 156 O ILE 39 -16.171 -5.327 -2.292 1.00 3.00 O ATOM 157 N VAL 40 -15.321 -7.324 -1.659 1.00 3.00 N ATOM 158 CA VAL 40 -14.163 -7.272 -2.544 1.00 3.00 C ATOM 159 C VAL 40 -14.108 -8.546 -3.380 1.00 3.00 C ATOM 160 O VAL 40 -14.513 -9.628 -2.916 1.00 3.00 O ATOM 161 N THR 41 -13.622 -8.404 -4.610 1.00 3.00 N ATOM 162 CA THR 41 -13.550 -9.522 -5.544 1.00 3.00 C ATOM 163 C THR 41 -12.166 -9.656 -6.198 1.00 3.00 C ATOM 164 O THR 41 -12.010 -9.386 -7.389 1.00 3.00 O ATOM 165 N PRO 42 -11.145 -10.070 -5.420 1.00 3.00 N ATOM 166 CA PRO 42 -9.892 -10.387 -6.093 1.00 3.00 C ATOM 167 C PRO 42 -9.970 -11.747 -6.780 1.00 3.00 C ATOM 168 O PRO 42 -10.760 -12.599 -6.365 1.00 3.00 O ATOM 169 N GLU 43 -9.181 -11.946 -7.834 1.00 3.00 N ATOM 170 CA GLU 43 -8.853 -13.302 -8.235 1.00 3.00 C ATOM 171 C GLU 43 -7.751 -13.806 -7.301 1.00 3.00 C ATOM 172 O GLU 43 -7.206 -13.025 -6.511 1.00 3.00 O ATOM 173 N LEU 44 -7.454 -15.101 -7.354 1.00 3.00 N ATOM 174 CA LEU 44 -6.488 -15.709 -6.429 1.00 3.00 C ATOM 175 C LEU 44 -5.074 -15.109 -6.573 1.00 3.00 C ATOM 176 O LEU 44 -4.364 -14.933 -5.575 1.00 3.00 O ATOM 177 N VAL 45 -4.699 -14.779 -7.810 1.00 3.00 N ATOM 178 CA VAL 45 -3.453 -14.071 -8.096 1.00 3.00 C ATOM 179 C VAL 45 -3.373 -12.737 -7.347 1.00 3.00 C ATOM 180 O VAL 45 -2.356 -12.441 -6.718 1.00 3.00 O ATOM 181 N GLU 46 -4.452 -11.956 -7.395 1.00 3.00 N ATOM 182 CA GLU 46 -4.516 -10.649 -6.728 1.00 3.00 C ATOM 183 C GLU 46 -4.559 -10.751 -5.206 1.00 3.00 C ATOM 184 O GLU 46 -4.094 -9.848 -4.505 1.00 3.00 O ATOM 185 N GLN 47 -5.125 -11.847 -4.703 1.00 3.00 N ATOM 186 CA GLN 47 -5.237 -12.083 -3.266 1.00 3.00 C ATOM 187 C GLN 47 -3.867 -12.262 -2.608 1.00 3.00 C ATOM 188 O GLN 47 -3.607 -11.715 -1.531 1.00 3.00 O ATOM 189 N ALA 48 -3.000 -13.026 -3.264 1.00 3.00 N ATOM 190 CA ALA 48 -1.734 -13.419 -2.672 1.00 3.00 C ATOM 191 C ALA 48 -0.361 -12.834 -2.415 1.00 3.00 C ATOM 192 O ALA 48 -0.009 -12.524 -1.287 1.00 3.00 O ATOM 193 N ARG 49 0.414 -12.696 -3.481 1.00 3.00 N ATOM 194 CA ARG 49 1.721 -12.217 -3.363 1.00 3.00 C ATOM 195 C ARG 49 1.879 -10.926 -2.566 1.00 3.00 C ATOM 196 O ARG 49 2.482 -10.910 -1.495 1.00 3.00 O ATOM 197 N LEU 50 1.286 -9.844 -3.065 1.00 3.00 N ATOM 198 CA LEU 50 1.427 -8.572 -2.414 1.00 3.00 C ATOM 199 C LEU 50 0.548 -8.381 -1.170 1.00 3.00 C ATOM 200 O LEU 50 1.034 -8.007 -0.099 1.00 3.00 O ATOM 201 N GLU 51 -0.725 -8.698 -1.294 1.00 9.00 N ATOM 202 CA GLU 51 -1.669 -8.534 -0.227 1.00 9.00 C ATOM 203 C GLU 51 -1.317 -9.217 1.073 1.00 9.00 C ATOM 204 O GLU 51 -1.322 -8.586 2.131 1.00 9.00 O ATOM 205 N PHE 52 -0.982 -10.499 1.018 1.00 3.00 N ATOM 206 CA PHE 52 -0.673 -11.230 2.223 1.00 3.00 C ATOM 207 C PHE 52 0.810 -11.511 2.431 1.00 3.00 C ATOM 208 O PHE 52 1.160 -12.342 3.269 1.00 3.00 O ATOM 209 N GLY 53 1.679 -10.783 1.732 1.00 3.00 N ATOM 210 CA GLY 53 3.164 -10.987 1.818 1.00 3.00 C ATOM 211 C GLY 53 3.513 -12.476 1.560 1.00 3.00 C ATOM 212 O GLY 53 4.245 -13.106 2.319 1.00 3.00 O ATOM 213 N GLN 54 2.962 -13.011 0.466 1.00 3.00 N ATOM 214 CA GLN 54 3.159 -14.403 0.078 1.00 3.00 C ATOM 215 C GLN 54 2.795 -15.218 -1.181 1.00 3.00 C ATOM 216 O GLN 54 2.005 -14.755 -2.008 1.00 3.00 O TER END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 212 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 69.36 61.5 104 100.0 104 ARMSMC SECONDARY STRUCTURE . . 60.45 68.9 74 100.0 74 ARMSMC SURFACE . . . . . . . . 68.04 60.8 74 100.0 74 ARMSMC BURIED . . . . . . . . 72.50 63.3 30 100.0 30 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 31 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 11.38 (Number of atoms: 53) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 11.38 53 100.0 53 CRMSCA CRN = ALL/NP . . . . . 0.2146 CRMSCA SECONDARY STRUCTURE . . 10.30 37 100.0 37 CRMSCA SURFACE . . . . . . . . 11.77 38 100.0 38 CRMSCA BURIED . . . . . . . . 10.30 15 100.0 15 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 11.17 212 80.3 264 CRMSMC SECONDARY STRUCTURE . . 10.19 148 80.4 184 CRMSMC SURFACE . . . . . . . . 11.58 152 80.4 189 CRMSMC BURIED . . . . . . . . 10.04 60 80.0 75 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 665 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 635 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 467 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 486 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 179 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 11.17 212 24.2 877 CRMSALL SECONDARY STRUCTURE . . 10.19 148 24.1 615 CRMSALL SURFACE . . . . . . . . 11.58 152 23.8 638 CRMSALL BURIED . . . . . . . . 10.04 60 25.1 239 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.673 0.513 0.260 53 100.0 53 ERRCA SECONDARY STRUCTURE . . 6.776 0.490 0.249 37 100.0 37 ERRCA SURFACE . . . . . . . . 8.147 0.535 0.272 38 100.0 38 ERRCA BURIED . . . . . . . . 6.472 0.455 0.228 15 100.0 15 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.449 0.506 0.258 212 80.3 264 ERRMC SECONDARY STRUCTURE . . 6.608 0.480 0.242 148 80.4 184 ERRMC SURFACE . . . . . . . . 7.916 0.527 0.269 152 80.4 189 ERRMC BURIED . . . . . . . . 6.268 0.452 0.230 60 80.0 75 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 665 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 635 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 467 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 486 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 179 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 7.449 0.506 0.258 212 24.2 877 ERRALL SECONDARY STRUCTURE . . 6.608 0.480 0.242 148 24.1 615 ERRALL SURFACE . . . . . . . . 7.916 0.527 0.269 152 23.8 638 ERRALL BURIED . . . . . . . . 6.268 0.452 0.230 60 25.1 239 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 0 0 1 5 24 53 53 DISTCA CA (P) 0.00 0.00 1.89 9.43 45.28 53 DISTCA CA (RMS) 0.00 0.00 2.44 3.91 6.99 DISTCA ALL (N) 0 3 7 25 95 212 877 DISTALL ALL (P) 0.00 0.34 0.80 2.85 10.83 877 DISTALL ALL (RMS) 0.00 1.51 2.06 3.69 6.98 DISTALL END of the results output