####################################################### # # # LGA # # --------------- # # # # Local-Global Alignment # # A Method for Finding 3-D Similarities # # in Protein Structures # # # # ------------ 05/2009 # # # # Adam Zemla (adamz@llnl.gov) # # Lawrence Livermore National Laboratory, CA # # # ####################################################### # Molecule1: number of CA atoms 53 ( 212), selected 53 , name T0538AL396_1-D1 # Molecule2: number of CA atoms 53 ( 877), selected 53 , name T0538-D1.pdb # PARAMETERS: -3 -ie -o1 -sda -d:4 -swap T0538AL396_1-D1.lga # FIXED Atom-Atom correspondence # GDT and LCS analysis LCS - RMSD CUTOFF 5.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 53 2 - 54 2.16 2.16 LCS_AVERAGE: 100.00 LCS - RMSD CUTOFF 2.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 50 2 - 51 1.93 2.19 LCS_AVERAGE: 92.06 LCS - RMSD CUTOFF 1.00 length segment l_RMS g_RMS LONGEST_CONTINUOUS_SEGMENT: 40 2 - 41 0.97 2.72 LCS_AVERAGE: 63.51 LCS_GDT MOLECULE-1 MOLECULE-2 LCS_DETAILS GDT_DETAILS TOTAL NUMBER OF RESIDUE PAIRS: 53 LCS_GDT RESIDUE RESIDUE SEGMENT_SIZE GLOBAL DISTANCE TEST COLUMNS: number of residues under the threshold assigned to each residue pair LCS_GDT NAME NUMBER NAME NUMBER 1.0 2.0 5.0 0.5 1.0 1.5 2.0 2.5 3.0 3.5 4.0 4.5 5.0 5.5 6.0 6.5 7.0 7.5 8.0 8.5 9.0 9.5 10.0 LCS_GDT N 2 N 2 40 50 53 10 25 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 3 L 3 40 50 53 10 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 4 R 4 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT W 5 W 5 40 50 53 10 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 6 T 6 40 50 53 10 23 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 7 S 7 40 50 53 9 23 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 8 E 8 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 9 A 9 40 50 53 9 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 10 K 10 40 50 53 7 23 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 11 T 11 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 12 K 12 40 50 53 6 23 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 13 L 13 40 50 53 7 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 14 K 14 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT N 15 N 15 40 50 53 7 24 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 16 I 16 40 50 53 7 23 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT P 17 P 17 40 50 53 7 19 38 41 44 45 47 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 18 F 18 40 50 53 5 25 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 19 F 19 40 50 53 5 25 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 20 A 20 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 21 R 21 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT S 22 S 22 40 50 53 9 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Q 23 Q 23 40 50 53 9 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 24 A 24 40 50 53 9 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT K 25 K 25 40 50 53 8 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 26 A 26 40 50 53 9 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 27 R 27 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 28 I 28 40 50 53 10 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 29 E 29 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Q 30 Q 30 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 31 L 31 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 32 A 32 40 50 53 9 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 33 R 33 40 50 53 7 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Q 34 Q 34 40 50 53 7 25 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 35 A 35 40 50 53 5 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 36 E 36 40 50 53 10 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Q 37 Q 37 40 50 53 8 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT D 38 D 38 40 50 53 10 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT I 39 I 39 40 50 53 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT V 40 V 40 40 50 53 10 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT T 41 T 41 40 50 53 7 19 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT P 42 P 42 27 50 53 7 18 35 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 43 E 43 14 50 53 8 18 22 36 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 44 L 44 14 50 53 8 18 21 36 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT V 45 V 45 14 50 53 8 18 25 37 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 46 E 46 14 50 53 8 18 21 36 41 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Q 47 Q 47 14 50 53 8 18 21 33 39 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT A 48 A 48 14 50 53 7 17 21 28 38 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT R 49 R 49 14 50 53 7 18 21 33 39 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT L 50 L 50 14 50 53 7 18 21 33 39 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT E 51 E 51 14 50 53 7 17 21 28 38 44 48 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT F 52 F 52 14 34 53 7 12 20 25 36 42 48 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT G 53 G 53 14 34 53 6 12 18 28 38 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 LCS_GDT Q 54 Q 54 3 18 53 1 4 4 4 6 6 12 15 53 53 53 53 53 53 53 53 53 53 53 53 LCS_AVERAGE LCS_A: 85.19 ( 63.51 92.06 100.00 ) GLOBAL_DISTANCE_TEST (summary information about detected largest sets of residues (represented by selected AToms) that can fit under specified thresholds) GDT DIST_CUTOFF 0.50 1.00 1.50 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 6.00 6.50 7.00 7.50 8.00 8.50 9.00 9.50 10.00 GDT NUMBER_AT 11 27 39 41 44 45 49 51 53 53 53 53 53 53 53 53 53 53 53 53 GDT PERCENT_AT 20.75 50.94 73.58 77.36 83.02 84.91 92.45 96.23 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 100.00 GDT RMS_LOCAL 0.40 0.69 0.95 1.02 1.29 1.39 1.87 1.99 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 GDT RMS_ALL_AT 2.62 2.57 2.67 2.68 2.51 2.45 2.18 2.18 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 2.16 # Checking swapping # Molecule1 Molecule2 DISTANCE Mis MC All Dist_max GDC_mc GDC_all LGA N 2 N 2 1.194 4 0.028 0.028 1.325 85.952 42.976 LGA L 3 L 3 0.905 4 0.015 0.015 1.037 88.214 44.107 LGA R 4 R 4 0.660 7 0.048 0.048 0.816 90.476 32.900 LGA W 5 W 5 0.680 10 0.029 0.029 0.923 90.476 25.850 LGA T 6 T 6 1.223 3 0.016 0.016 1.257 81.429 46.531 LGA S 7 S 7 1.547 2 0.076 0.076 1.547 79.286 52.857 LGA E 8 E 8 0.476 5 0.034 0.034 0.877 92.857 41.270 LGA A 9 A 9 1.171 1 0.005 0.005 1.448 83.690 66.952 LGA K 10 K 10 1.436 5 0.088 0.088 1.436 81.429 36.190 LGA T 11 T 11 0.725 3 0.034 0.034 1.307 85.952 49.116 LGA K 12 K 12 1.715 5 0.017 0.017 1.870 75.000 33.333 LGA L 13 L 13 1.480 4 0.036 0.036 1.526 79.286 39.643 LGA K 14 K 14 1.070 5 0.097 0.097 1.970 77.143 34.286 LGA N 15 N 15 2.236 4 0.068 0.068 2.673 62.976 31.488 LGA I 16 I 16 2.697 4 0.033 0.033 2.697 59.048 29.524 LGA P 17 P 17 3.429 3 0.026 0.026 3.429 53.571 30.612 LGA F 18 F 18 2.811 7 0.040 0.040 3.093 57.262 20.823 LGA F 19 F 19 2.965 7 0.110 0.110 2.965 62.976 22.900 LGA A 20 A 20 1.903 1 0.078 0.078 2.238 72.976 58.381 LGA R 21 R 21 1.048 7 0.017 0.017 1.368 85.952 31.255 LGA S 22 S 22 0.370 2 0.066 0.066 0.529 97.619 65.079 LGA Q 23 Q 23 0.769 5 0.026 0.026 0.846 90.476 40.212 LGA A 24 A 24 0.583 1 0.039 0.039 0.657 92.857 74.286 LGA K 25 K 25 0.709 5 0.014 0.014 0.796 90.476 40.212 LGA A 26 A 26 1.184 1 0.029 0.029 1.184 83.690 66.952 LGA R 27 R 27 1.283 7 0.018 0.018 1.283 81.429 29.610 LGA I 28 I 28 0.832 4 0.080 0.080 0.910 90.476 45.238 LGA E 29 E 29 1.044 5 0.103 0.103 1.044 88.214 39.206 LGA Q 30 Q 30 1.085 5 0.021 0.021 1.182 81.429 36.190 LGA L 31 L 31 1.478 4 0.049 0.049 1.607 79.286 39.643 LGA A 32 A 32 1.218 1 0.016 0.016 1.218 83.690 66.952 LGA R 33 R 33 0.674 7 0.064 0.064 0.770 90.476 32.900 LGA Q 34 Q 34 1.610 5 0.072 0.072 1.883 75.000 33.333 LGA A 35 A 35 2.336 1 0.060 0.060 2.772 64.881 51.905 LGA E 36 E 36 1.870 5 0.017 0.017 2.628 66.905 29.735 LGA Q 37 Q 37 2.118 5 0.139 0.139 2.118 70.833 31.481 LGA D 38 D 38 1.478 4 0.053 0.053 1.689 79.286 39.643 LGA I 39 I 39 0.769 4 0.083 0.083 1.237 85.952 42.976 LGA V 40 V 40 0.794 3 0.126 0.126 1.118 88.214 50.408 LGA T 41 T 41 1.008 3 0.078 0.078 1.008 88.214 50.408 LGA P 42 P 42 1.288 3 0.098 0.098 1.691 79.405 45.374 LGA E 43 E 43 2.090 5 0.024 0.024 2.400 66.786 29.683 LGA L 44 L 44 2.271 4 0.024 0.024 2.536 62.857 31.429 LGA V 45 V 45 1.898 3 0.020 0.020 2.556 66.905 38.231 LGA E 46 E 46 2.635 5 0.033 0.033 3.203 57.262 25.450 LGA Q 47 Q 47 3.403 5 0.047 0.047 3.888 46.667 20.741 LGA A 48 A 48 3.708 1 0.046 0.046 4.118 41.786 33.429 LGA R 49 R 49 3.396 7 0.061 0.061 4.005 45.119 16.407 LGA L 50 L 50 3.693 4 0.042 0.042 4.455 41.905 20.952 LGA E 51 E 51 4.421 5 0.015 0.015 4.969 34.286 15.238 LGA F 52 F 52 4.750 7 0.033 0.033 5.021 31.548 11.472 LGA G 53 G 53 3.925 0 0.527 0.527 4.392 40.238 40.238 LGA Q 54 Q 54 5.094 5 0.523 0.523 7.366 24.167 10.741 # RMSD_GDC results: CA MC common percent ALL common percent GDC_mc GDC_all NUMBER_OF_ATOMS_AA: 53 212 212 100.00 434 212 48.85 53 SUMMARY(RMSD_GDC): 2.161 2.190 2.190 72.722 38.052 #CA N1 N2 DIST N RMSD GDT_TS LGA_S3 LGA_Q SUMMARY(GDT) 53 53 4.0 51 1.99 81.132 87.911 2.438 LGA_LOCAL RMSD: 1.991 Number of atoms: 51 under DIST: 4.00 LGA_ASGN_ATOMS RMSD: 2.175 Number of assigned atoms: 53 Std_ASGN_ATOMS RMSD: 2.161 Standard rmsd on all 53 assigned CA atoms Unitary ROTATION matrix and the SHIFT vector superimpose molecules (1=>2) X_new = -0.484710 * X + 0.572645 * Y + -0.661161 * Z + 0.119089 Y_new = -0.016762 * X + -0.761836 * Y + -0.647553 * Z + 0.627248 Z_new = -0.874514 * X + -0.302793 * Y + 0.378868 * Z + -0.045439 Euler angles from the ROTATION matrix. Conventions XYZ and ZXZ: Phi Theta Psi [DEG: Phi Theta Psi ] XYZ: -3.107025 1.064433 -0.674255 [DEG: -178.0194 60.9875 -38.6320 ] ZXZ: -0.795796 1.182223 -1.904119 [DEG: -45.5958 67.7364 -109.0980 ] # END of job REMARK ---------------------------------------------------------- REMARK Citing LGA: REMARK Zemla A., LGA - a Method for Finding 3D Similarities in REMARK Protein Structures, Nucleic Acids Research, 2003, V. 31, REMARK No. 13, pp. 3370-3374. REMARK ---------------------------------------------------------- REMARK Superimposed MOLECULES (1=>2) Output: 1 molecule REMARK 1: T0538AL396_1-D1 REMARK 2: T0538-D1.pdb REMARK GDT and LCS analysis REMARK FIXED Atom-Atom correspondence REMARK LGA parameters: -3 -ie -o1 -sda -d:4 -swap T0538AL396_1-D1.lga REMARK #CA N1 N2 DIST N RMSD LGA_S3 RMSD_global REMARK SUMMARY: 53 53 4.0 51 1.99 87.911 2.16 REMARK ---------------------------------------------------------- MOLECULE T0538AL396_1-D1 REMARK This file has been preprocessed by preprocess_pdbv2.1.00.100503REMARK Aligment from pdb entry: 2kru_A ATOM 5 N ASN 2 -8.340 9.446 -3.988 1.00 0.00 N ATOM 6 CA ASN 2 -7.171 8.667 -3.627 1.00 0.00 C ATOM 7 C ASN 2 -6.695 9.076 -2.242 1.00 0.00 C ATOM 8 O ASN 2 -6.937 10.205 -1.807 1.00 0.00 O ATOM 9 N LEU 3 -6.036 8.164 -1.546 1.00 0.00 N ATOM 10 CA LEU 3 -5.459 8.477 -0.245 1.00 0.00 C ATOM 11 C LEU 3 -4.123 9.190 -0.407 1.00 0.00 C ATOM 12 O LEU 3 -3.632 9.375 -1.525 1.00 0.00 O ATOM 13 N ARG 4 -3.538 9.589 0.709 1.00 0.00 N ATOM 14 CA ARG 4 -2.240 10.235 0.695 1.00 0.00 C ATOM 15 C ARG 4 -1.142 9.182 0.741 1.00 0.00 C ATOM 16 O ARG 4 -1.091 8.367 1.660 1.00 0.00 O ATOM 17 N TRP 5 -0.281 9.181 -0.260 1.00 0.00 N ATOM 18 CA TRP 5 0.801 8.216 -0.332 1.00 0.00 C ATOM 19 C TRP 5 2.133 8.870 -0.014 1.00 0.00 C ATOM 20 O TRP 5 2.455 9.935 -0.543 1.00 0.00 O ATOM 21 N THR 6 2.896 8.229 0.855 1.00 0.00 N ATOM 22 CA THR 6 4.184 8.754 1.269 1.00 0.00 C ATOM 23 C THR 6 5.319 8.100 0.489 1.00 0.00 C ATOM 24 O THR 6 5.169 6.986 -0.024 1.00 0.00 O ATOM 25 N SER 7 6.457 8.783 0.427 1.00 0.00 N ATOM 26 CA SER 7 7.625 8.283 -0.288 1.00 0.00 C ATOM 27 C SER 7 8.114 6.965 0.301 1.00 0.00 C ATOM 28 O SER 7 8.745 6.167 -0.388 1.00 0.00 O ATOM 29 N GLU 8 7.814 6.745 1.572 1.00 0.00 N ATOM 30 CA GLU 8 8.202 5.521 2.261 1.00 0.00 C ATOM 31 C GLU 8 7.477 4.311 1.678 1.00 0.00 C ATOM 32 O GLU 8 8.092 3.285 1.391 1.00 0.00 O ATOM 33 N ALA 9 6.173 4.448 1.482 1.00 0.00 N ATOM 34 CA ALA 9 5.372 3.368 0.922 1.00 0.00 C ATOM 35 C ALA 9 5.663 3.193 -0.566 1.00 0.00 C ATOM 36 O ALA 9 5.808 2.071 -1.057 1.00 0.00 O ATOM 37 N LYS 10 5.775 4.309 -1.274 1.00 0.00 N ATOM 38 CA LYS 10 6.012 4.283 -2.710 1.00 0.00 C ATOM 39 C LYS 10 7.393 3.718 -3.041 1.00 0.00 C ATOM 40 O LYS 10 7.582 3.111 -4.093 1.00 0.00 O ATOM 41 N THR 11 8.356 3.920 -2.145 1.00 0.00 N ATOM 42 CA THR 11 9.699 3.366 -2.322 1.00 0.00 C ATOM 43 C THR 11 9.652 1.839 -2.397 1.00 0.00 C ATOM 44 O THR 11 10.417 1.213 -3.138 1.00 0.00 O ATOM 45 N LYS 12 8.742 1.244 -1.635 1.00 0.00 N ATOM 46 CA LYS 12 8.563 -0.201 -1.652 1.00 0.00 C ATOM 47 C LYS 12 7.730 -0.627 -2.856 1.00 0.00 C ATOM 48 O LYS 12 7.974 -1.677 -3.447 1.00 0.00 O ATOM 49 N LEU 13 6.762 0.200 -3.224 1.00 0.00 N ATOM 50 CA LEU 13 5.905 -0.080 -4.371 1.00 0.00 C ATOM 51 C LEU 13 6.692 0.031 -5.676 1.00 0.00 C ATOM 52 O LEU 13 6.381 -0.636 -6.662 1.00 0.00 O ATOM 53 N LYS 14 7.722 0.869 -5.664 1.00 0.00 N ATOM 54 CA LYS 14 8.571 1.040 -6.831 1.00 0.00 C ATOM 55 C LYS 14 9.407 -0.190 -7.128 1.00 0.00 C ATOM 56 O LYS 14 10.029 -0.290 -8.184 1.00 0.00 O ATOM 57 N ASN 15 9.423 -1.130 -6.191 1.00 0.00 N ATOM 58 CA ASN 15 10.134 -2.387 -6.374 1.00 0.00 C ATOM 59 C ASN 15 9.215 -3.422 -7.012 1.00 0.00 C ATOM 60 O ASN 15 9.603 -4.567 -7.254 1.00 0.00 O ATOM 61 N ILE 16 7.991 -3.002 -7.272 1.00 0.00 N ATOM 62 CA ILE 16 6.971 -3.862 -7.835 1.00 0.00 C ATOM 63 C ILE 16 6.716 -3.480 -9.291 1.00 0.00 C ATOM 64 O ILE 16 6.582 -2.300 -9.607 1.00 0.00 O ATOM 65 N PRO 17 6.688 -4.471 -10.201 1.00 0.00 N ATOM 66 CA PRO 17 6.417 -4.243 -11.628 1.00 0.00 C ATOM 67 C PRO 17 5.162 -3.404 -11.866 1.00 0.00 C ATOM 68 O PRO 17 4.157 -3.552 -11.167 1.00 0.00 O ATOM 69 N PHE 18 5.221 -2.540 -12.874 1.00 0.00 N ATOM 70 CA PHE 18 4.158 -1.569 -13.139 1.00 0.00 C ATOM 71 C PHE 18 2.788 -2.224 -13.346 1.00 0.00 C ATOM 72 O PHE 18 1.760 -1.620 -13.043 1.00 0.00 O ATOM 73 N PHE 19 2.764 -3.456 -13.846 1.00 0.00 N ATOM 74 CA PHE 19 1.497 -4.110 -14.165 1.00 0.00 C ATOM 75 C PHE 19 0.850 -4.742 -12.932 1.00 0.00 C ATOM 76 O PHE 19 -0.296 -5.186 -12.986 1.00 0.00 O ATOM 77 N ALA 20 1.577 -4.775 -11.821 1.00 0.00 N ATOM 78 CA ALA 20 1.020 -5.282 -10.572 1.00 0.00 C ATOM 79 C ALA 20 1.054 -4.221 -9.480 1.00 0.00 C ATOM 80 O ALA 20 0.589 -4.453 -8.365 1.00 0.00 O ATOM 81 N ARG 21 1.589 -3.047 -9.810 1.00 0.00 N ATOM 82 CA ARG 21 1.601 -1.932 -8.870 1.00 0.00 C ATOM 83 C ARG 21 0.187 -1.517 -8.515 1.00 0.00 C ATOM 84 O ARG 21 -0.110 -1.207 -7.367 1.00 0.00 O ATOM 85 N SER 22 -0.681 -1.522 -9.514 1.00 0.00 N ATOM 86 CA SER 22 -2.051 -1.080 -9.327 1.00 0.00 C ATOM 87 C SER 22 -2.817 -2.081 -8.467 1.00 0.00 C ATOM 88 O SER 22 -3.723 -1.713 -7.721 1.00 0.00 O ATOM 89 N GLN 23 -2.428 -3.349 -8.575 1.00 0.00 N ATOM 90 CA GLN 23 -3.013 -4.411 -7.767 1.00 0.00 C ATOM 91 C GLN 23 -2.759 -4.144 -6.288 1.00 0.00 C ATOM 92 O GLN 23 -3.657 -4.266 -5.457 1.00 0.00 O ATOM 93 N ALA 24 -1.528 -3.775 -5.971 1.00 0.00 N ATOM 94 CA ALA 24 -1.154 -3.474 -4.600 1.00 0.00 C ATOM 95 C ALA 24 -1.686 -2.103 -4.172 1.00 0.00 C ATOM 96 O ALA 24 -2.349 -1.984 -3.146 1.00 0.00 O ATOM 97 N LYS 25 -1.421 -1.085 -4.991 1.00 0.00 N ATOM 98 CA LYS 25 -1.721 0.305 -4.634 1.00 0.00 C ATOM 99 C LYS 25 -3.216 0.521 -4.403 1.00 0.00 C ATOM 100 O LYS 25 -3.613 1.186 -3.443 1.00 0.00 O ATOM 101 N ALA 26 -4.045 -0.046 -5.267 1.00 0.00 N ATOM 102 CA ALA 26 -5.491 0.087 -5.124 1.00 0.00 C ATOM 103 C ALA 26 -5.983 -0.707 -3.918 1.00 0.00 C ATOM 104 O ALA 26 -6.902 -0.285 -3.215 1.00 0.00 O ATOM 105 N ARG 27 -5.345 -1.845 -3.671 1.00 0.00 N ATOM 106 CA ARG 27 -5.722 -2.699 -2.553 1.00 0.00 C ATOM 107 C ARG 27 -5.392 -1.995 -1.240 1.00 0.00 C ATOM 108 O ARG 27 -6.208 -1.953 -0.325 1.00 0.00 O ATOM 109 N ILE 28 -4.197 -1.414 -1.167 1.00 0.00 N ATOM 110 CA ILE 28 -3.791 -0.652 0.006 1.00 0.00 C ATOM 111 C ILE 28 -4.666 0.575 0.201 1.00 0.00 C ATOM 112 O ILE 28 -4.955 0.964 1.331 1.00 0.00 O ATOM 113 N GLU 29 -5.081 1.188 -0.906 1.00 0.00 N ATOM 114 CA GLU 29 -5.964 2.342 -0.845 1.00 0.00 C ATOM 115 C GLU 29 -7.235 1.948 -0.111 1.00 0.00 C ATOM 116 O GLU 29 -7.659 2.618 0.819 1.00 0.00 O ATOM 117 N GLN 30 -7.804 0.815 -0.502 1.00 0.00 N ATOM 118 CA GLN 30 -9.008 0.309 0.141 1.00 0.00 C ATOM 119 C GLN 30 -8.704 -0.186 1.551 1.00 0.00 C ATOM 120 O GLN 30 -9.548 -0.089 2.442 1.00 0.00 O ATOM 121 N LEU 31 -7.490 -0.686 1.764 1.00 0.00 N ATOM 122 CA LEU 31 -7.120 -1.239 3.059 1.00 0.00 C ATOM 123 C LEU 31 -7.023 -0.141 4.110 1.00 0.00 C ATOM 124 O LEU 31 -7.586 -0.253 5.198 1.00 0.00 O ATOM 125 N ALA 32 -6.315 0.927 3.770 1.00 0.00 N ATOM 126 CA ALA 32 -6.116 2.031 4.693 1.00 0.00 C ATOM 127 C ALA 32 -7.447 2.689 5.046 1.00 0.00 C ATOM 128 O ALA 32 -7.684 3.044 6.194 1.00 0.00 O ATOM 129 N ARG 33 -8.330 2.819 4.066 1.00 0.00 N ATOM 130 CA ARG 33 -9.656 3.385 4.309 1.00 0.00 C ATOM 131 C ARG 33 -10.450 2.482 5.235 1.00 0.00 C ATOM 132 O ARG 33 -11.180 2.953 6.105 1.00 0.00 O ATOM 133 N GLN 34 -10.277 1.182 5.055 1.00 0.00 N ATOM 134 CA GLN 34 -10.976 0.204 5.867 1.00 0.00 C ATOM 135 C GLN 34 -10.560 0.314 7.334 1.00 0.00 C ATOM 136 O GLN 34 -11.397 0.231 8.235 1.00 0.00 O ATOM 137 N ALA 35 -9.265 0.514 7.567 1.00 0.00 N ATOM 138 CA ALA 35 -8.741 0.606 8.926 1.00 0.00 C ATOM 139 C ALA 35 -8.865 2.024 9.486 1.00 0.00 C ATOM 140 O ALA 35 -8.757 2.231 10.694 1.00 0.00 O ATOM 141 N GLU 36 -9.087 2.996 8.609 1.00 0.00 N ATOM 142 CA GLU 36 -9.285 4.367 9.049 1.00 0.00 C ATOM 143 C GLU 36 -8.014 5.195 8.987 1.00 0.00 C ATOM 144 O GLU 36 -7.763 6.027 9.857 1.00 0.00 O ATOM 145 N GLN 37 -7.218 4.969 7.955 1.00 0.00 N ATOM 146 CA GLN 37 -5.968 5.684 7.770 1.00 0.00 C ATOM 147 C GLN 37 -5.982 6.434 6.439 1.00 0.00 C ATOM 148 O GLN 37 -6.019 5.820 5.374 1.00 0.00 O ATOM 149 N ASP 38 -5.992 7.772 6.481 1.00 0.00 N ATOM 150 CA ASP 38 -5.994 8.606 5.275 1.00 0.00 C ATOM 151 C ASP 38 -4.638 8.630 4.571 1.00 0.00 C ATOM 152 O ASP 38 -4.557 8.913 3.373 1.00 0.00 O ATOM 153 N ILE 39 -3.579 8.329 5.309 1.00 0.00 N ATOM 154 CA ILE 39 -2.229 8.419 4.767 1.00 0.00 C ATOM 155 C ILE 39 -1.531 7.062 4.784 1.00 0.00 C ATOM 156 O ILE 39 -1.230 6.520 5.847 1.00 0.00 O ATOM 157 N VAL 40 -1.265 6.523 3.601 1.00 0.00 N ATOM 158 CA VAL 40 -0.569 5.250 3.481 1.00 0.00 C ATOM 159 C VAL 40 0.923 5.445 3.724 1.00 0.00 C ATOM 160 O VAL 40 1.636 6.021 2.895 1.00 0.00 O ATOM 161 N THR 41 1.380 4.995 4.879 1.00 0.00 N ATOM 162 CA THR 41 2.782 5.080 5.235 1.00 0.00 C ATOM 163 C THR 41 3.466 3.733 5.028 1.00 0.00 C ATOM 164 O THR 41 2.841 2.782 4.548 1.00 0.00 O ATOM 165 N PRO 42 4.739 3.650 5.393 1.00 0.00 N ATOM 166 CA PRO 42 5.477 2.400 5.296 1.00 0.00 C ATOM 167 C PRO 42 4.894 1.376 6.256 1.00 0.00 C ATOM 168 O PRO 42 4.819 0.189 5.943 1.00 0.00 O ATOM 169 N GLU 43 4.457 1.854 7.417 1.00 0.00 N ATOM 170 CA GLU 43 3.841 0.997 8.423 1.00 0.00 C ATOM 171 C GLU 43 2.507 0.450 7.922 1.00 0.00 C ATOM 172 O GLU 43 2.218 -0.739 8.069 1.00 0.00 O ATOM 173 N LEU 44 1.706 1.322 7.315 1.00 0.00 N ATOM 174 CA LEU 44 0.419 0.917 6.757 1.00 0.00 C ATOM 175 C LEU 44 0.613 -0.079 5.618 1.00 0.00 C ATOM 176 O LEU 44 -0.070 -1.100 5.551 1.00 0.00 O ATOM 177 N VAL 45 1.564 0.214 4.734 1.00 0.00 N ATOM 178 CA VAL 45 1.884 -0.680 3.625 1.00 0.00 C ATOM 179 C VAL 45 2.356 -2.027 4.163 1.00 0.00 C ATOM 180 O VAL 45 2.015 -3.078 3.626 1.00 0.00 O ATOM 181 N GLU 46 3.136 -1.973 5.235 1.00 0.00 N ATOM 182 CA GLU 46 3.642 -3.172 5.895 1.00 0.00 C ATOM 183 C GLU 46 2.485 -4.027 6.406 1.00 0.00 C ATOM 184 O GLU 46 2.408 -5.222 6.120 1.00 0.00 O ATOM 185 N GLN 47 1.577 -3.394 7.147 1.00 0.00 N ATOM 186 CA GLN 47 0.406 -4.077 7.694 1.00 0.00 C ATOM 187 C GLN 47 -0.485 -4.609 6.579 1.00 0.00 C ATOM 188 O GLN 47 -1.013 -5.719 6.671 1.00 0.00 O ATOM 189 N ALA 48 -0.641 -3.815 5.528 1.00 0.00 N ATOM 190 CA ALA 48 -1.432 -4.216 4.376 1.00 0.00 C ATOM 191 C ALA 48 -0.813 -5.426 3.697 1.00 0.00 C ATOM 192 O ALA 48 -1.509 -6.382 3.354 1.00 0.00 O ATOM 193 N ARG 49 0.503 -5.387 3.529 1.00 0.00 N ATOM 194 CA ARG 49 1.224 -6.474 2.890 1.00 0.00 C ATOM 195 C ARG 49 1.055 -7.763 3.687 1.00 0.00 C ATOM 196 O ARG 49 0.730 -8.803 3.122 1.00 0.00 O ATOM 197 N LEU 50 1.254 -7.682 4.998 1.00 0.00 N ATOM 198 CA LEU 50 1.061 -8.836 5.875 1.00 0.00 C ATOM 199 C LEU 50 -0.378 -9.336 5.822 1.00 0.00 C ATOM 200 O LEU 50 -0.628 -10.537 5.898 1.00 0.00 O ATOM 201 N GLU 51 -1.314 -8.410 5.683 1.00 0.00 N ATOM 202 CA GLU 51 -2.731 -8.747 5.634 1.00 0.00 C ATOM 203 C GLU 51 -3.071 -9.488 4.343 1.00 0.00 C ATOM 204 O GLU 51 -3.801 -10.475 4.361 1.00 0.00 O ATOM 205 N PHE 52 -2.537 -9.005 3.231 1.00 0.00 N ATOM 206 CA PHE 52 -2.831 -9.587 1.924 1.00 0.00 C ATOM 207 C PHE 52 -2.022 -10.860 1.701 1.00 0.00 C ATOM 208 O PHE 52 -2.520 -11.843 1.147 1.00 0.00 O ATOM 209 N GLY 53 -0.775 -10.833 2.139 1.00 0.00 N ATOM 210 CA GLY 53 0.106 -11.964 1.962 1.00 0.00 C ATOM 211 C GLY 53 1.538 -11.618 2.304 1.00 0.00 C ATOM 212 O GLY 53 2.364 -11.405 1.413 1.00 0.00 O ATOM 213 N GLN 54 1.828 -11.534 3.594 1.00 0.00 N ATOM 214 CA GLN 54 3.173 -11.222 4.038 1.00 0.00 C ATOM 215 C GLN 54 4.006 -12.471 4.192 1.00 0.00 C ATOM 216 O GLN 54 4.232 -12.950 5.305 1.00 0.00 O END ########################## # # # ACE results: # # # ########################## Number of atoms possible to evaluate: 212 MEASURES: ANGLES RMS : model <-> target (MC: PHI+PSI) DIHED RMS: ARMSMC PC NP PP TN ALL . . . . . . . . . . 20.14 96.2 104 100.0 104 ARMSMC SECONDARY STRUCTURE . . 21.42 97.3 74 100.0 74 ARMSMC SURFACE . . . . . . . . 22.71 94.6 74 100.0 74 ARMSMC BURIED . . . . . . . . 11.58 100.0 30 100.0 30 ARMSMC (SC: CHI1) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 45 ARMSSC1 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 43 ARMSSC1 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 30 ARMSSC1 SURFACE . . . . . . . . 0.00 0.0 0 0.0 34 ARMSSC1 BURIED . . . . . . . . 0.00 0.0 0 0.0 11 ARMSSC1 (SC: CHI2) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 38 ARMSSC2 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 31 ARMSSC2 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 26 ARMSSC2 SURFACE . . . . . . . . 0.00 0.0 0 0.0 29 ARMSSC2 BURIED . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC2 (SC: CHI3) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 21 ARMSSC3 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 15 ARMSSC3 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 17 ARMSSC3 SURFACE . . . . . . . . 0.00 0.0 0 0.0 20 ARMSSC3 BURIED . . . . . . . . 0.00 0.0 0 0.0 1 ARMSSC3 (SC: CHI4) DIHED RMS: ARMSSC PC NP PP TN ALL . . . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 RELIABLE SIDE CHAINS . 0.00 0.0 0 0.0 9 ARMSSC4 SECONDARY STRUCTURE . . 0.00 0.0 0 0.0 8 ARMSSC4 SURFACE . . . . . . . . 0.00 0.0 0 0.0 9 ARMSSC4 BURIED . . . . . . . . 0.00 0.0 0 0.0 0 ARMSSC4 COORDINATES RMS : model <-> target TEST (CA) RMS = 2.16 (Number of atoms: 53) (CA) RMS: CRMSCA NP PP TN ALL . . . . . . . . . . 2.16 53 100.0 53 CRMSCA CRN = ALL/NP . . . . . 0.0408 CRMSCA SECONDARY STRUCTURE . . 2.15 37 100.0 37 CRMSCA SURFACE . . . . . . . . 2.32 38 100.0 38 CRMSCA BURIED . . . . . . . . 1.69 15 100.0 15 CRMSCA (MC) RMS: CRMSMC NP PP TN ALL . . . . . . . . . . 2.19 212 80.3 264 CRMSMC SECONDARY STRUCTURE . . 2.17 148 80.4 184 CRMSMC SURFACE . . . . . . . . 2.36 152 80.4 189 CRMSMC BURIED . . . . . . . . 1.70 60 80.0 75 CRMSMC (SC) RMS: CRMSSC NP PP TN ALL . . . . . . . . . . 0.00 0 0.0 665 CRMSSC RELIABLE SIDE CHAINS . 0.00 0 0.0 635 CRMSSC SECONDARY STRUCTURE . . 0.00 0 0.0 467 CRMSSC SURFACE . . . . . . . . 0.00 0 0.0 486 CRMSSC BURIED . . . . . . . . 0.00 0 0.0 179 CRMSSC (ALL) RMS: CRMSALL NP PP TN ALL . . . . . . . . . . 2.19 212 24.2 877 CRMSALL SECONDARY STRUCTURE . . 2.17 148 24.1 615 CRMSALL SURFACE . . . . . . . . 2.36 152 23.8 638 CRMSALL BURIED . . . . . . . . 1.70 60 25.1 239 CRMSALL Accuracy of estimates of atomic coordinate errors: model <-> target (CA) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.877 1.000 0.500 53 100.0 53 ERRCA SECONDARY STRUCTURE . . 1.881 1.000 0.500 37 100.0 37 ERRCA SURFACE . . . . . . . . 2.020 1.000 0.500 38 100.0 38 ERRCA BURIED . . . . . . . . 1.516 1.000 0.500 15 100.0 15 ERRCA (MC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.884 1.000 0.500 212 80.3 264 ERRMC SECONDARY STRUCTURE . . 1.892 1.000 0.500 148 80.4 184 ERRMC SURFACE . . . . . . . . 2.029 1.000 0.500 152 80.4 189 ERRMC BURIED . . . . . . . . 1.516 1.000 0.500 60 80.0 75 ERRMC (SC) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 0.000 0.000 0.000 0 0.0 665 ERRSC RELIABLE SIDE CHAINS . 0.000 0.000 0.000 0 0.0 635 ERRSC SECONDARY STRUCTURE . . 0.000 0.000 0.000 0 0.0 467 ERRSC SURFACE . . . . . . . . 0.000 0.000 0.000 0 0.0 486 ERRSC BURIED . . . . . . . . 0.000 0.000 0.000 0 0.0 179 ERRSC (ALL) ERRORS: |D-E| |D-E|/|D+E| SR(D,E) NP PP TN ALL . . . . . . . . . . 1.884 1.000 0.500 212 24.2 877 ERRALL SECONDARY STRUCTURE . . 1.892 1.000 0.500 148 24.1 615 ERRALL SURFACE . . . . . . . . 2.029 1.000 0.500 152 23.8 638 ERRALL BURIED . . . . . . . . 1.516 1.000 0.500 60 25.1 239 ERRALL DISTANCES: Percent of total atoms where distance (target <-> model) in global superposition is less than: 1 , 2 , 3 , 5 , 10 Angstroms D < 1 D < 2 D < 3 D < 5 D < 10 NP TN CA (N) 14 34 42 53 53 53 53 DISTCA CA (P) 26.42 64.15 79.25 100.00 100.00 53 DISTCA CA (RMS) 0.82 1.25 1.53 2.16 2.16 DISTCA ALL (N) 53 138 173 210 212 212 877 DISTALL ALL (P) 6.04 15.74 19.73 23.95 24.17 877 DISTALL ALL (RMS) 0.82 1.26 1.58 2.11 2.19 DISTALL END of the results output